0s autopkgtest [18:42:31]: starting date and time: 2024-03-24 18:42:31+0000 0s autopkgtest [18:42:31]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [18:42:31]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.pk7m9fyv/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed --apt-upgrade r-cran-stars --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-rnetcdf/2.9-1-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-2.secgroup --name adt-noble-i386-r-cran-stars-20240324-184231-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 82s autopkgtest [18:43:53]: testbed dpkg architecture: amd64 82s autopkgtest [18:43:53]: testbed apt version: 2.7.12 82s autopkgtest [18:43:53]: test architecture: i386 82s autopkgtest [18:43:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup 82s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 83s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 83s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 83s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 83s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 83s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [488 kB] 83s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [727 kB] 83s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 83s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 83s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 83s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 83s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4419 kB] 83s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1300 kB] 83s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 83s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [96.4 kB] 83s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [27.4 kB] 83s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 86s Fetched 11.8 MB in 1s (7925 kB/s) 86s Reading package lists... 88s Reading package lists... 88s Building dependency tree... 88s Reading state information... 88s Calculating upgrade... 88s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 88s Reading package lists... 89s Building dependency tree... 89s Reading state information... 89s 0 upgraded, 0 newly installed, 0 to remove and 248 not upgraded. 89s sh: Attempting to set up Debian/Ubuntu apt sources automatically 89s sh: Distribution appears to be Ubuntu 90s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s eatmydata is already the newest version (131-1). 91s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 92s dbus is already the newest version (1.14.10-4ubuntu1). 92s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 92s rng-tools-debian is already the newest version (2.4). 92s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 93s The following packages will be REMOVED: 93s cloud-init* python3-configobj* python3-debconf* 93s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 93s After this operation, 3256 kB disk space will be freed. 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 93s Removing cloud-init (24.1.2-0ubuntu1) ... 94s Removing python3-configobj (5.0.8-3) ... 94s Removing python3-debconf (1.5.86) ... 94s Processing triggers for man-db (2.12.0-3) ... 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 94s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 95s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 95s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 95s invoke-rc.d: policy-rc.d denied execution of try-restart. 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 96s linux-generic is already the newest version (6.8.0-11.11+1). 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 96s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 96s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 98s Reading package lists... 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 99s Calculating upgrade... 99s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s autopkgtest [18:44:10]: rebooting testbed after setup commands that affected boot 278s autopkgtest [18:47:09]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 279s autopkgtest [18:47:10]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-stars 280s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-stars 0.6-4-1 (dsc) [2749 B] 280s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-stars 0.6-4-1 (tar) [3714 kB] 280s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-stars 0.6-4-1 (diff) [4316 B] 280s gpgv: Signature made Tue Oct 17 13:19:14 2023 UTC 280s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 280s gpgv: issuer "tille@debian.org" 280s gpgv: Can't check signature: No public key 280s dpkg-source: warning: cannot verify inline signature for ./r-cran-stars_0.6-4-1.dsc: no acceptable signature found 280s autopkgtest [18:47:11]: testing package r-cran-stars version 0.6-4-1 281s autopkgtest [18:47:12]: build not needed 282s autopkgtest [18:47:13]: test run-unit-test: preparing testbed 287s Note, using file '/tmp/autopkgtest.skOjQf/1-autopkgtest-satdep.dsc' to get the build dependencies 287s Reading package lists... 287s Building dependency tree... 287s Reading state information... 288s Starting pkgProblemResolver with broken count: 0 288s Starting 2 pkgProblemResolver with broken count: 0 288s Done 288s The following NEW packages will be installed: 288s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 288s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 288s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 288s g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 288s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins 288s javascript-common libaec0 libarmadillo12 libarpack2 libasan8 libatomic1 288s libblas3 libblosc1 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcfitsio10 288s libcrypt-dev libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 288s libfreexl1 libfyba0 libgcc-13-dev libgdal34 libgeos-c1v5 libgeos3.12.1 288s libgeotiff5 libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b 288s libhdf4-0-alt libhdf5-103-1 libhdf5-hl-100 libheif-plugin-dav1d 288s libheif-plugin-libde265 libheif1 libhwasan0 libice6 libisl23 libitm1 288s libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 288s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 288s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 288s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 288s libjs-sifter.js libjs-twitter-bootstrap-datepicker libkmlbase1 libkmldom1 288s libkmlengine1 liblapack3 liblcms2-2 liblerc4 liblsan0 libltdl7 liblua5.4-0 288s libminizip1 libmpc3 libmysqlclient21 libnetcdf19 libodbc2 libodbcinst2 288s libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 288s libpaper-utils libpaper1 libpixman-1-0 libpoppler134 libpq5 libproj25 288s libqhull-r8.0 libquadmath0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 288s libspatialite8 libstdc++-13-dev libsuperlu6 libsz2 libtcl8.6 libthai-data 288s libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 libudunits2-0 libudunits2-data 288s liburiparser1 libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2 libxft2 288s libxrender1 libxss1 libxt6 linux-libc-dev littler mysql-common 288s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 288s proj-data r-base-core r-cran-abind r-cran-areal r-cran-askpass 288s r-cran-base64enc r-cran-bdsmatrix r-cran-brio r-cran-bslib r-cran-cachem 288s r-cran-cairo r-cran-callr r-cran-class r-cran-classint r-cran-cli 288s r-cran-clue r-cran-cluster r-cran-codetools r-cran-collapse 288s r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon 288s r-cran-cubelyr r-cran-curl r-cran-dbi r-cran-deldir r-cran-desc 288s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-ellipsis 288s r-cran-evaluate r-cran-exactextractr r-cran-fansi r-cran-farver 288s r-cran-fastmap r-cran-fnn r-cran-fontawesome r-cran-formula r-cran-fs 288s r-cran-future r-cran-future.apply r-cran-generics r-cran-ggforce 288s r-cran-ggplot2 r-cran-ggthemes r-cran-globals r-cran-glue r-cran-goftest 288s r-cran-gridextra r-cran-gstat r-cran-gtable r-cran-highr r-cran-htmltools 288s r-cran-httpuv r-cran-httr r-cran-intervals r-cran-isoband r-cran-jquerylib 288s r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later 288s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 288s r-cran-littler r-cran-lmtest r-cran-lwgeom r-cran-magrittr r-cran-mapdata 288s r-cran-maps r-cran-mass r-cran-matrix r-cran-maxlik r-cran-memoise 288s r-cran-mgcv r-cran-mime r-cran-misctools r-cran-munsell r-cran-ncdfgeom 288s r-cran-ncmeta r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-pbapply 288s r-cran-pcict r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 288s r-cran-pkgload r-cran-plm r-cran-polyclip r-cran-praise r-cran-processx 288s r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 288s r-cran-randomforest r-cran-rappdirs r-cran-raster r-cran-rbibutils 288s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rdpack 288s r-cran-rematch2 r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf 288s r-cran-rpart r-cran-rprojroot r-cran-s2 r-cran-sandwich r-cran-sass 288s r-cran-scales r-cran-sf r-cran-sftime r-cran-shiny r-cran-sourcetools 288s r-cran-sp r-cran-spacetime r-cran-spatstat r-cran-spatstat.data 288s r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.linnet 288s r-cran-spatstat.model r-cran-spatstat.random r-cran-spatstat.sparse 288s r-cran-spatstat.utils r-cran-stars r-cran-stringi r-cran-stringr 288s r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor r-cran-terra 288s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 288s r-cran-tweenr r-cran-units r-cran-utf8 r-cran-vctrs r-cran-viridis 288s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk r-cran-xfun 288s r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo rpcsvc-proto unixodbc-common 288s unzip x11-common xdg-utils zip 288s 0 upgraded, 318 newly installed, 0 to remove and 0 not upgraded. 288s Need to get 345 MB of archives. 288s After this operation, 976 MB of additional disk space will be used. 288s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu6 [20.4 kB] 288s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 288s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 288s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 288s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu6 [2126 kB] 288s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 288s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 288s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 288s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 288s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 288s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 288s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 288s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 288s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 288s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 288s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 288s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 288s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 288s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 288s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 288s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 288s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 288s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 289s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 289s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 289s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 289s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 289s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 289s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 289s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 289s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 289s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 289s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 289s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 289s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 289s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 289s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 289s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 289s Get:39 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 289s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 289s Get:41 http://ftpmaster.internal/ubuntu noble/universe amd64 gdal-data all 3.8.4+dfsg-1 [261 kB] 289s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 gdal-plugins amd64 3.8.4+dfsg-1 [24.5 kB] 289s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 289s Get:44 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 289s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 289s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 289s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 289s Get:48 http://ftpmaster.internal/ubuntu noble/universe amd64 libarpack2 amd64 3.9.1-1 [105 kB] 289s Get:49 http://ftpmaster.internal/ubuntu noble/universe amd64 libsuperlu6 amd64 6.0.1+dfsg1-1 [184 kB] 289s Get:50 http://ftpmaster.internal/ubuntu noble/universe amd64 libarmadillo12 amd64 1:12.6.7+dfsg-1 [135 kB] 289s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libsnappy1v5 amd64 1.1.10-1 [28.4 kB] 289s Get:52 http://ftpmaster.internal/ubuntu noble/universe amd64 libblosc1 amd64 1.21.5+ds-1 [36.5 kB] 289s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 289s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 289s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 289s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 289s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 289s Get:58 http://ftpmaster.internal/ubuntu noble/universe amd64 libcfitsio10 amd64 4.3.1-1 [528 kB] 289s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 289s Get:60 http://ftpmaster.internal/ubuntu noble/universe amd64 libdav1d7 amd64 1.4.0-1 [605 kB] 289s Get:61 http://ftpmaster.internal/ubuntu noble/universe amd64 libde265-0 amd64 1.0.15-1 [192 kB] 289s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 289s Get:63 http://ftpmaster.internal/ubuntu noble/universe amd64 libfyba0 amd64 4.1.1-8 [119 kB] 289s Get:64 http://ftpmaster.internal/ubuntu noble/universe amd64 libminizip1 amd64 1:1.3.dfsg-3ubuntu1 [21.8 kB] 289s Get:65 http://ftpmaster.internal/ubuntu noble/universe amd64 libfreexl1 amd64 2.0.0-1 [41.8 kB] 289s Get:66 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeos3.12.1 amd64 3.12.1-1 [852 kB] 289s Get:67 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeos-c1v5 amd64 3.12.1-1 [96.1 kB] 289s Get:68 http://ftpmaster.internal/ubuntu noble/universe amd64 proj-data all 9.3.1-1 [7867 kB] 289s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 289s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 289s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 289s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 289s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 289s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 289s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 289s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libproj25 amd64 9.3.1-1 [1379 kB] 289s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeotiff5 amd64 1.7.1-5 [62.5 kB] 289s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libgif7 amd64 5.2.1-2.5 [34.0 kB] 289s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf4-0-alt amd64 4.2.16-3 [282 kB] 289s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 289s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 289s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif-plugin-dav1d amd64 1.17.6-1ubuntu1 [10.9 kB] 289s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif-plugin-libde265 amd64 1.17.6-1ubuntu1 [9024 B] 289s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif1 amd64 1.17.6-1ubuntu1 [325 kB] 289s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 liburiparser1 amd64 0.9.7+dfsg-2 [35.9 kB] 289s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmlbase1 amd64 1.3.0-10 [47.4 kB] 289s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmldom1 amd64 1.3.0-10 [151 kB] 289s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmlengine1 amd64 1.3.0-10 [69.3 kB] 289s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 mysql-common all 5.8+1.1.0 [6626 B] 289s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libmysqlclient21 amd64 8.0.36-1 [1283 kB] 289s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB] 289s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libnetcdf19 amd64 1:4.9.2-3ubuntu1 [472 kB] 289s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libltdl7 amd64 2.4.7-7 [40.5 kB] 289s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libodbc2 amd64 2.3.12-1 [159 kB] 289s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 unixodbc-common all 2.3.12-1 [8524 B] 289s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libodbcinst2 amd64 2.3.12-1 [30.9 kB] 289s Get:97 http://ftpmaster.internal/ubuntu noble/universe amd64 libogdi4.1 amd64 4.1.1+ds-1 [218 kB] 289s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libopenjp2-7 amd64 2.5.0-2 [174 kB] 289s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 liblcms2-2 amd64 2.14-2 [161 kB] 289s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libpoppler134 amd64 24.02.0-1ubuntu2 [1112 kB] 289s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpq5 amd64 16.2-1 [138 kB] 289s Get:102 http://ftpmaster.internal/ubuntu noble/universe amd64 libqhull-r8.0 amd64 2020.2-6 [194 kB] 289s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 librttopo1 amd64 1.1.0-3 [191 kB] 289s Get:104 http://ftpmaster.internal/ubuntu noble/universe amd64 libspatialite8 amd64 5.1.0-1 [2055 kB] 289s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 libxerces-c3.2 amd64 3.2.4+debian-1.1 [1110 kB] 289s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 libgdal34 amd64 3.8.4+dfsg-1 [8343 kB] 289s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 289s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 289s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 289s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 289s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 289s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 289s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 289s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 289s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 289s Get:116 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 289s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 289s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 289s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 289s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 289s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 289s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 289s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 289s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 289s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 289s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 289s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 289s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 289s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 289s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 289s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 289s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 289s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 289s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 289s Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 289s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 289s Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.14-1 [779 kB] 289s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 libudunits2-data all 2.2.28-7 [19.3 kB] 289s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 libudunits2-0 amd64 2.2.28-7 [54.2 kB] 289s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 289s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 289s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 289s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 289s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 289s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 289s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 289s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 289s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 289s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 289s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 289s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 290s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 290s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 290s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 290s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 290s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 290s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 290s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 290s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 290s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 290s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 290s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 290s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 290s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 290s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 290s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 290s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 290s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 290s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 290s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 290s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-class amd64 7.3-22-2 [88.3 kB] 290s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 290s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-e1071 amd64 1.7-14-1 [558 kB] 290s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-kernsmooth amd64 2.23-22-1 [91.7 kB] 290s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-classint amd64 0.4-10+dfsg-1 [106 kB] 290s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 290s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 290s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 290s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-wk amd64 0.9.1-1 [1784 kB] 290s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-s2 amd64 1.1.6-1 [1980 kB] 290s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-units amd64 0.8-5+dfsg-1 [275 kB] 290s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sf amd64 1.0-15+dfsg-1 [3028 kB] 290s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 290s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 290s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 290s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 290s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bdsmatrix amd64 1.3-6-1 [293 kB] 290s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 290s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 290s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 290s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 290s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 290s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 290s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 290s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 290s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 290s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 290s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 290s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 290s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 290s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 290s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 290s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 290s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 290s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 290s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cluster amd64 2.1.6-1 [554 kB] 290s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-clue amd64 0.3-65-1 [960 kB] 290s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 290s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-collapse amd64 2.0.10-1 [3112 kB] 290s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 290s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 290s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 290s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rex all 1.2.1-1 [129 kB] 290s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 290s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 290s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 290s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 290s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 290s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 290s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 290s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cubelyr all 1.0.2-1 [347 kB] 290s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-deldir amd64 2.0-4-1 [270 kB] 290s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 290s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 290s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 290s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 290s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sp amd64 1:2.1-2+dfsg-1 [1447 kB] 290s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-terra amd64 1.7-65-1 [3676 kB] 290s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-raster amd64 3.6-26-1 [3118 kB] 290s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-exactextractr amd64 0.10.0-1 [579 kB] 290s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 290s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fnn amd64 1.1.4-1 [122 kB] 290s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 290s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 290s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-globals all 0.16.2-1 [117 kB] 290s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 290s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-parallelly amd64 1.37.1-1 [365 kB] 290s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 290s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-future.apply all 1.11.1+dfsg-1 [171 kB] 290s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 290s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 290s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 290s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 290s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 290s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 290s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 290s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 290s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 290s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 290s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 290s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tweenr amd64 2.0.2-1 [397 kB] 290s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-polyclip amd64 1.10-6-1 [113 kB] 290s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-systemfonts amd64 1.0.5-1 [229 kB] 290s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppeigen amd64 0.3.3.9.4-1 [1189 kB] 290s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggforce amd64 0.4.1-1 [1846 kB] 290s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 290s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 290s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggthemes all 5.1.0-1 [434 kB] 290s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] 290s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 290s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB] 290s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sftime all 0.2-0-6 [168 kB] 290s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xts amd64 0.13.2-1 [772 kB] 290s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-intervals amd64 0.15.4-1 [756 kB] 290s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spacetime all 1.3-1-1 [2804 kB] 290s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stars all 0.6-4-1 [4030 kB] 291s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gstat amd64 2.1-1-2 [2343 kB] 291s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 291s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 291s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 291s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 291s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 291s Get:273 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 291s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 291s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB] 291s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lwgeom amd64 0.2-13-3 [420 kB] 291s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-maps amd64 3.4.2-1 [2359 kB] 291s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 291s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB] 291s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sandwich all 3.1-0-1 [1484 kB] 291s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-maxlik all 1.5-2-1 [1550 kB] 291s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rnetcdf amd64 2.9-1-1 [232 kB] 291s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 291s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ncmeta all 0.3.6-1 [360 kB] 291s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 291s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 291s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pcict amd64 0.5-4.4-1 [94.4 kB] 291s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 291s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 291s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 291s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rbibutils amd64 2.2.16-1 [754 kB] 291s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rdpack all 2.6-1 [742 kB] 291s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plm all 2.6-3-1 [2141 kB] 291s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 291s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-randomforest amd64 4.7-1.1-1 [215 kB] 291s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 291s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 291s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 291s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 291s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 291s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 291s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 291s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 291s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 291s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rpart amd64 4.1.23-1 [661 kB] 291s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.utils amd64 3.0-4-1 [361 kB] 291s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.data all 3.0-4-1 [4090 kB] 291s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.geom amd64 3.2-8-1 [3817 kB] 291s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.random amd64 3.2-2-1 [1140 kB] 291s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] 291s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.sparse amd64 3.0-3-1 [215 kB] 291s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.explore amd64 3.2-5-1 [3283 kB] 291s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.model amd64 3.2-8-1 [3290 kB] 291s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.linnet amd64 3.1-3-1 [1408 kB] 291s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat amd64 3.0-7-1 [3817 kB] 291s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 291s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 291s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 292s Preconfiguring packages ... 292s Fetched 345 MB in 3s (111 MB/s) 292s Selecting previously unselected package libc-dev-bin. 292s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 292s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu6_amd64.deb ... 292s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 292s Selecting previously unselected package linux-libc-dev:amd64. 292s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 292s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 292s Selecting previously unselected package libcrypt-dev:amd64. 292s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 292s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 292s Selecting previously unselected package rpcsvc-proto. 292s Preparing to unpack .../003-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 292s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 292s Selecting previously unselected package libc6-dev:amd64. 292s Preparing to unpack .../004-libc6-dev_2.39-0ubuntu6_amd64.deb ... 292s Unpacking libc6-dev:amd64 (2.39-0ubuntu6) ... 293s Selecting previously unselected package libisl23:amd64. 293s Preparing to unpack .../005-libisl23_0.26-3_amd64.deb ... 293s Unpacking libisl23:amd64 (0.26-3) ... 293s Selecting previously unselected package libmpc3:amd64. 293s Preparing to unpack .../006-libmpc3_1.3.1-1_amd64.deb ... 293s Unpacking libmpc3:amd64 (1.3.1-1) ... 293s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 293s Preparing to unpack .../007-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 293s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 293s Selecting previously unselected package cpp-13. 293s Preparing to unpack .../008-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 293s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 293s Selecting previously unselected package cpp-x86-64-linux-gnu. 293s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 293s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 293s Selecting previously unselected package cpp. 293s Preparing to unpack .../010-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 293s Unpacking cpp (4:13.2.0-7ubuntu1) ... 293s Selecting previously unselected package libcc1-0:amd64. 293s Preparing to unpack .../011-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 293s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 293s Selecting previously unselected package libgomp1:amd64. 293s Preparing to unpack .../012-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 293s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 293s Selecting previously unselected package libitm1:amd64. 293s Preparing to unpack .../013-libitm1_14-20240303-1ubuntu1_amd64.deb ... 293s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 293s Selecting previously unselected package libatomic1:amd64. 293s Preparing to unpack .../014-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 293s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 293s Selecting previously unselected package libasan8:amd64. 293s Preparing to unpack .../015-libasan8_14-20240303-1ubuntu1_amd64.deb ... 293s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 293s Selecting previously unselected package liblsan0:amd64. 293s Preparing to unpack .../016-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 293s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 293s Selecting previously unselected package libtsan2:amd64. 293s Preparing to unpack .../017-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 293s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 293s Selecting previously unselected package libubsan1:amd64. 293s Preparing to unpack .../018-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 293s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 293s Selecting previously unselected package libhwasan0:amd64. 293s Preparing to unpack .../019-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 293s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 293s Selecting previously unselected package libquadmath0:amd64. 293s Preparing to unpack .../020-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 293s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 293s Selecting previously unselected package libgcc-13-dev:amd64. 293s Preparing to unpack .../021-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 293s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 293s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 294s Preparing to unpack .../022-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 294s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 294s Selecting previously unselected package gcc-13. 294s Preparing to unpack .../023-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 294s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 294s Selecting previously unselected package gcc-x86-64-linux-gnu. 294s Preparing to unpack .../024-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 294s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 294s Selecting previously unselected package gcc. 294s Preparing to unpack .../025-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 294s Unpacking gcc (4:13.2.0-7ubuntu1) ... 294s Selecting previously unselected package libstdc++-13-dev:amd64. 294s Preparing to unpack .../026-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 294s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 294s Selecting previously unselected package g++-13-x86-64-linux-gnu. 294s Preparing to unpack .../027-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 294s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 294s Selecting previously unselected package g++-13. 294s Preparing to unpack .../028-g++-13_13.2.0-17ubuntu2_amd64.deb ... 294s Unpacking g++-13 (13.2.0-17ubuntu2) ... 294s Selecting previously unselected package g++-x86-64-linux-gnu. 294s Preparing to unpack .../029-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 294s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 294s Selecting previously unselected package g++. 294s Preparing to unpack .../030-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 294s Unpacking g++ (4:13.2.0-7ubuntu1) ... 294s Selecting previously unselected package build-essential. 294s Preparing to unpack .../031-build-essential_12.10ubuntu1_amd64.deb ... 294s Unpacking build-essential (12.10ubuntu1) ... 294s Selecting previously unselected package fonts-dejavu-mono. 294s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8_all.deb ... 294s Unpacking fonts-dejavu-mono (2.37-8) ... 295s Selecting previously unselected package fonts-dejavu-core. 295s Preparing to unpack .../033-fonts-dejavu-core_2.37-8_all.deb ... 295s Unpacking fonts-dejavu-core (2.37-8) ... 295s Selecting previously unselected package fontconfig-config. 295s Preparing to unpack .../034-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 295s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 295s Selecting previously unselected package libfontconfig1:amd64. 295s Preparing to unpack .../035-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 295s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 295s Selecting previously unselected package fontconfig. 295s Preparing to unpack .../036-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 295s Unpacking fontconfig (2.15.0-1ubuntu1) ... 295s Selecting previously unselected package fonts-font-awesome. 295s Preparing to unpack .../037-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 295s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 295s Selecting previously unselected package fonts-glyphicons-halflings. 295s Preparing to unpack .../038-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 295s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 295s Selecting previously unselected package fonts-mathjax. 295s Preparing to unpack .../039-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 295s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 295s Selecting previously unselected package gdal-data. 295s Preparing to unpack .../040-gdal-data_3.8.4+dfsg-1_all.deb ... 295s Unpacking gdal-data (3.8.4+dfsg-1) ... 295s Selecting previously unselected package gdal-plugins:amd64. 295s Preparing to unpack .../041-gdal-plugins_3.8.4+dfsg-1_amd64.deb ... 295s Unpacking gdal-plugins:amd64 (3.8.4+dfsg-1) ... 295s Selecting previously unselected package javascript-common. 295s Preparing to unpack .../042-javascript-common_11+nmu1_all.deb ... 295s Unpacking javascript-common (11+nmu1) ... 295s Selecting previously unselected package libaec0:amd64. 295s Preparing to unpack .../043-libaec0_1.1.2-1_amd64.deb ... 295s Unpacking libaec0:amd64 (1.1.2-1) ... 295s Selecting previously unselected package libblas3:amd64. 295s Preparing to unpack .../044-libblas3_3.12.0-3_amd64.deb ... 295s Unpacking libblas3:amd64 (3.12.0-3) ... 295s Selecting previously unselected package libgfortran5:amd64. 295s Preparing to unpack .../045-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 295s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 295s Selecting previously unselected package liblapack3:amd64. 295s Preparing to unpack .../046-liblapack3_3.12.0-3_amd64.deb ... 295s Unpacking liblapack3:amd64 (3.12.0-3) ... 295s Selecting previously unselected package libarpack2:amd64. 295s Preparing to unpack .../047-libarpack2_3.9.1-1_amd64.deb ... 295s Unpacking libarpack2:amd64 (3.9.1-1) ... 295s Selecting previously unselected package libsuperlu6:amd64. 295s Preparing to unpack .../048-libsuperlu6_6.0.1+dfsg1-1_amd64.deb ... 295s Unpacking libsuperlu6:amd64 (6.0.1+dfsg1-1) ... 295s Selecting previously unselected package libarmadillo12. 295s Preparing to unpack .../049-libarmadillo12_1%3a12.6.7+dfsg-1_amd64.deb ... 295s Unpacking libarmadillo12 (1:12.6.7+dfsg-1) ... 296s Selecting previously unselected package libsnappy1v5:amd64. 296s Preparing to unpack .../050-libsnappy1v5_1.1.10-1_amd64.deb ... 296s Unpacking libsnappy1v5:amd64 (1.1.10-1) ... 296s Selecting previously unselected package libblosc1:amd64. 296s Preparing to unpack .../051-libblosc1_1.21.5+ds-1_amd64.deb ... 296s Unpacking libblosc1:amd64 (1.21.5+ds-1) ... 296s Selecting previously unselected package libpixman-1-0:amd64. 296s Preparing to unpack .../052-libpixman-1-0_0.42.2-1_amd64.deb ... 296s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 296s Selecting previously unselected package libxcb-render0:amd64. 296s Preparing to unpack .../053-libxcb-render0_1.15-1_amd64.deb ... 296s Unpacking libxcb-render0:amd64 (1.15-1) ... 296s Selecting previously unselected package libxcb-shm0:amd64. 296s Preparing to unpack .../054-libxcb-shm0_1.15-1_amd64.deb ... 296s Unpacking libxcb-shm0:amd64 (1.15-1) ... 296s Selecting previously unselected package libxrender1:amd64. 296s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 296s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 296s Selecting previously unselected package libcairo2:amd64. 296s Preparing to unpack .../056-libcairo2_1.18.0-1_amd64.deb ... 296s Unpacking libcairo2:amd64 (1.18.0-1) ... 296s Selecting previously unselected package libcfitsio10:amd64. 296s Preparing to unpack .../057-libcfitsio10_4.3.1-1_amd64.deb ... 296s Unpacking libcfitsio10:amd64 (4.3.1-1) ... 296s Selecting previously unselected package libdatrie1:amd64. 296s Preparing to unpack .../058-libdatrie1_0.2.13-3_amd64.deb ... 296s Unpacking libdatrie1:amd64 (0.2.13-3) ... 296s Selecting previously unselected package libdav1d7:amd64. 296s Preparing to unpack .../059-libdav1d7_1.4.0-1_amd64.deb ... 296s Unpacking libdav1d7:amd64 (1.4.0-1) ... 296s Selecting previously unselected package libde265-0:amd64. 296s Preparing to unpack .../060-libde265-0_1.0.15-1_amd64.deb ... 296s Unpacking libde265-0:amd64 (1.0.15-1) ... 296s Selecting previously unselected package libdeflate0:amd64. 296s Preparing to unpack .../061-libdeflate0_1.19-1_amd64.deb ... 296s Unpacking libdeflate0:amd64 (1.19-1) ... 296s Selecting previously unselected package libfyba0:amd64. 296s Preparing to unpack .../062-libfyba0_4.1.1-8_amd64.deb ... 296s Unpacking libfyba0:amd64 (4.1.1-8) ... 296s Selecting previously unselected package libminizip1:amd64. 296s Preparing to unpack .../063-libminizip1_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 296s Unpacking libminizip1:amd64 (1:1.3.dfsg-3ubuntu1) ... 296s Selecting previously unselected package libfreexl1:amd64. 296s Preparing to unpack .../064-libfreexl1_2.0.0-1_amd64.deb ... 296s Unpacking libfreexl1:amd64 (2.0.0-1) ... 296s Selecting previously unselected package libgeos3.12.1:amd64. 296s Preparing to unpack .../065-libgeos3.12.1_3.12.1-1_amd64.deb ... 296s Unpacking libgeos3.12.1:amd64 (3.12.1-1) ... 296s Selecting previously unselected package libgeos-c1v5:amd64. 296s Preparing to unpack .../066-libgeos-c1v5_3.12.1-1_amd64.deb ... 296s Unpacking libgeos-c1v5:amd64 (3.12.1-1) ... 296s Selecting previously unselected package proj-data. 296s Preparing to unpack .../067-proj-data_9.3.1-1_all.deb ... 296s Unpacking proj-data (9.3.1-1) ... 296s Selecting previously unselected package libjbig0:amd64. 296s Preparing to unpack .../068-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 296s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 296s Selecting previously unselected package libjpeg-turbo8:amd64. 296s Preparing to unpack .../069-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 296s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 296s Selecting previously unselected package libjpeg8:amd64. 296s Preparing to unpack .../070-libjpeg8_8c-2ubuntu11_amd64.deb ... 296s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 296s Selecting previously unselected package liblerc4:amd64. 296s Preparing to unpack .../071-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 296s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 296s Selecting previously unselected package libsharpyuv0:amd64. 296s Preparing to unpack .../072-libsharpyuv0_1.3.2-0.4_amd64.deb ... 296s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 296s Selecting previously unselected package libwebp7:amd64. 296s Preparing to unpack .../073-libwebp7_1.3.2-0.4_amd64.deb ... 296s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 296s Selecting previously unselected package libtiff6:amd64. 296s Preparing to unpack .../074-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 296s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 296s Selecting previously unselected package libproj25:amd64. 296s Preparing to unpack .../075-libproj25_9.3.1-1_amd64.deb ... 296s Unpacking libproj25:amd64 (9.3.1-1) ... 296s Selecting previously unselected package libgeotiff5:amd64. 296s Preparing to unpack .../076-libgeotiff5_1.7.1-5_amd64.deb ... 296s Unpacking libgeotiff5:amd64 (1.7.1-5) ... 296s Selecting previously unselected package libgif7:amd64. 296s Preparing to unpack .../077-libgif7_5.2.1-2.5_amd64.deb ... 296s Unpacking libgif7:amd64 (5.2.1-2.5) ... 296s Selecting previously unselected package libhdf4-0-alt. 296s Preparing to unpack .../078-libhdf4-0-alt_4.2.16-3_amd64.deb ... 296s Unpacking libhdf4-0-alt (4.2.16-3) ... 297s Selecting previously unselected package libsz2:amd64. 297s Preparing to unpack .../079-libsz2_1.1.2-1_amd64.deb ... 297s Unpacking libsz2:amd64 (1.1.2-1) ... 297s Selecting previously unselected package libhdf5-103-1:amd64. 297s Preparing to unpack .../080-libhdf5-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 297s Unpacking libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 297s Selecting previously unselected package libheif-plugin-dav1d:amd64. 297s Preparing to unpack .../081-libheif-plugin-dav1d_1.17.6-1ubuntu1_amd64.deb ... 297s Unpacking libheif-plugin-dav1d:amd64 (1.17.6-1ubuntu1) ... 297s Selecting previously unselected package libheif-plugin-libde265:amd64. 297s Preparing to unpack .../082-libheif-plugin-libde265_1.17.6-1ubuntu1_amd64.deb ... 297s Unpacking libheif-plugin-libde265:amd64 (1.17.6-1ubuntu1) ... 297s Selecting previously unselected package libheif1:amd64. 297s Preparing to unpack .../083-libheif1_1.17.6-1ubuntu1_amd64.deb ... 297s Unpacking libheif1:amd64 (1.17.6-1ubuntu1) ... 297s Selecting previously unselected package liburiparser1:amd64. 297s Preparing to unpack .../084-liburiparser1_0.9.7+dfsg-2_amd64.deb ... 297s Unpacking liburiparser1:amd64 (0.9.7+dfsg-2) ... 297s Selecting previously unselected package libkmlbase1:amd64. 297s Preparing to unpack .../085-libkmlbase1_1.3.0-10_amd64.deb ... 297s Unpacking libkmlbase1:amd64 (1.3.0-10) ... 297s Selecting previously unselected package libkmldom1:amd64. 297s Preparing to unpack .../086-libkmldom1_1.3.0-10_amd64.deb ... 297s Unpacking libkmldom1:amd64 (1.3.0-10) ... 297s Selecting previously unselected package libkmlengine1:amd64. 297s Preparing to unpack .../087-libkmlengine1_1.3.0-10_amd64.deb ... 297s Unpacking libkmlengine1:amd64 (1.3.0-10) ... 297s Selecting previously unselected package mysql-common. 297s Preparing to unpack .../088-mysql-common_5.8+1.1.0_all.deb ... 297s Unpacking mysql-common (5.8+1.1.0) ... 297s Selecting previously unselected package libmysqlclient21:amd64. 297s Preparing to unpack .../089-libmysqlclient21_8.0.36-1_amd64.deb ... 297s Unpacking libmysqlclient21:amd64 (8.0.36-1) ... 297s Selecting previously unselected package libhdf5-hl-100:amd64. 297s Preparing to unpack .../090-libhdf5-hl-100_1.10.10+repack-3ubuntu1_amd64.deb ... 297s Unpacking libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 297s Selecting previously unselected package libnetcdf19:amd64. 297s Preparing to unpack .../091-libnetcdf19_1%3a4.9.2-3ubuntu1_amd64.deb ... 297s Unpacking libnetcdf19:amd64 (1:4.9.2-3ubuntu1) ... 297s Selecting previously unselected package libltdl7:amd64. 297s Preparing to unpack .../092-libltdl7_2.4.7-7_amd64.deb ... 297s Unpacking libltdl7:amd64 (2.4.7-7) ... 297s Selecting previously unselected package libodbc2:amd64. 297s Preparing to unpack .../093-libodbc2_2.3.12-1_amd64.deb ... 297s Unpacking libodbc2:amd64 (2.3.12-1) ... 297s Selecting previously unselected package unixodbc-common. 297s Preparing to unpack .../094-unixodbc-common_2.3.12-1_all.deb ... 297s Unpacking unixodbc-common (2.3.12-1) ... 297s Selecting previously unselected package libodbcinst2:amd64. 297s Preparing to unpack .../095-libodbcinst2_2.3.12-1_amd64.deb ... 297s Unpacking libodbcinst2:amd64 (2.3.12-1) ... 297s Selecting previously unselected package libogdi4.1. 297s Preparing to unpack .../096-libogdi4.1_4.1.1+ds-1_amd64.deb ... 297s Unpacking libogdi4.1 (4.1.1+ds-1) ... 297s Selecting previously unselected package libopenjp2-7:amd64. 297s Preparing to unpack .../097-libopenjp2-7_2.5.0-2_amd64.deb ... 297s Unpacking libopenjp2-7:amd64 (2.5.0-2) ... 297s Selecting previously unselected package liblcms2-2:amd64. 297s Preparing to unpack .../098-liblcms2-2_2.14-2_amd64.deb ... 297s Unpacking liblcms2-2:amd64 (2.14-2) ... 297s Selecting previously unselected package libpoppler134:amd64. 297s Preparing to unpack .../099-libpoppler134_24.02.0-1ubuntu2_amd64.deb ... 297s Unpacking libpoppler134:amd64 (24.02.0-1ubuntu2) ... 297s Selecting previously unselected package libpq5:amd64. 297s Preparing to unpack .../100-libpq5_16.2-1_amd64.deb ... 297s Unpacking libpq5:amd64 (16.2-1) ... 297s Selecting previously unselected package libqhull-r8.0:amd64. 297s Preparing to unpack .../101-libqhull-r8.0_2020.2-6_amd64.deb ... 297s Unpacking libqhull-r8.0:amd64 (2020.2-6) ... 297s Selecting previously unselected package librttopo1:amd64. 297s Preparing to unpack .../102-librttopo1_1.1.0-3_amd64.deb ... 297s Unpacking librttopo1:amd64 (1.1.0-3) ... 297s Selecting previously unselected package libspatialite8:amd64. 297s Preparing to unpack .../103-libspatialite8_5.1.0-1_amd64.deb ... 297s Unpacking libspatialite8:amd64 (5.1.0-1) ... 298s Selecting previously unselected package libxerces-c3.2:amd64. 298s Preparing to unpack .../104-libxerces-c3.2_3.2.4+debian-1.1_amd64.deb ... 298s Unpacking libxerces-c3.2:amd64 (3.2.4+debian-1.1) ... 298s Selecting previously unselected package libgdal34:amd64. 298s Preparing to unpack .../105-libgdal34_3.8.4+dfsg-1_amd64.deb ... 298s Unpacking libgdal34:amd64 (3.8.4+dfsg-1) ... 298s Selecting previously unselected package libgraphite2-3:amd64. 298s Preparing to unpack .../106-libgraphite2-3_1.3.14-2_amd64.deb ... 298s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 298s Selecting previously unselected package libharfbuzz0b:amd64. 298s Preparing to unpack .../107-libharfbuzz0b_8.3.0-2_amd64.deb ... 298s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 298s Selecting previously unselected package x11-common. 298s Preparing to unpack .../108-x11-common_1%3a7.7+23ubuntu2_all.deb ... 298s Unpacking x11-common (1:7.7+23ubuntu2) ... 298s Selecting previously unselected package libice6:amd64. 298s Preparing to unpack .../109-libice6_2%3a1.0.10-1build2_amd64.deb ... 298s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 298s Selecting previously unselected package libjs-bootstrap. 298s Preparing to unpack .../110-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 298s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 298s Selecting previously unselected package libjs-popper.js. 298s Preparing to unpack .../111-libjs-popper.js_1.16.1+ds-6_all.deb ... 298s Unpacking libjs-popper.js (1.16.1+ds-6) ... 298s Selecting previously unselected package libjs-bootstrap4. 298s Preparing to unpack .../112-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 298s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 298s Selecting previously unselected package libjs-d3. 298s Preparing to unpack .../113-libjs-d3_3.5.17-4_all.deb ... 298s Unpacking libjs-d3 (3.5.17-4) ... 298s Selecting previously unselected package libjs-es5-shim. 298s Preparing to unpack .../114-libjs-es5-shim_4.6.7-2_all.deb ... 298s Unpacking libjs-es5-shim (4.6.7-2) ... 298s Selecting previously unselected package libjs-highlight.js. 298s Preparing to unpack .../115-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 298s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 298s Selecting previously unselected package libjs-jquery. 298s Preparing to unpack .../116-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 298s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 298s Selecting previously unselected package libjs-jquery-datatables. 298s Preparing to unpack .../117-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 298s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 298s Selecting previously unselected package libjs-sifter.js. 298s Preparing to unpack .../118-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 298s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 298s Selecting previously unselected package libjs-microplugin.js. 298s Preparing to unpack .../119-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 298s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 298s Selecting previously unselected package libjs-jquery-selectize.js. 298s Preparing to unpack .../120-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 298s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 298s Selecting previously unselected package libjs-jquery-ui. 298s Preparing to unpack .../121-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 298s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 298s Selecting previously unselected package libjs-json. 298s Preparing to unpack .../122-libjs-json_0~20221030+~1.0.8-1_all.deb ... 298s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 298s Selecting previously unselected package libjs-prettify. 298s Preparing to unpack .../123-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 298s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 298s Selecting previously unselected package liblua5.4-0:amd64. 299s Preparing to unpack .../124-liblua5.4-0_5.4.6-3_amd64.deb ... 299s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 299s Selecting previously unselected package libthai-data. 299s Preparing to unpack .../125-libthai-data_0.1.29-2_all.deb ... 299s Unpacking libthai-data (0.1.29-2) ... 299s Selecting previously unselected package libthai0:amd64. 299s Preparing to unpack .../126-libthai0_0.1.29-2_amd64.deb ... 299s Unpacking libthai0:amd64 (0.1.29-2) ... 299s Selecting previously unselected package libpango-1.0-0:amd64. 299s Preparing to unpack .../127-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 299s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 299s Selecting previously unselected package libpangoft2-1.0-0:amd64. 299s Preparing to unpack .../128-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 299s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 299s Selecting previously unselected package libpangocairo-1.0-0:amd64. 299s Preparing to unpack .../129-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 299s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 299s Selecting previously unselected package libpaper1:amd64. 299s Preparing to unpack .../130-libpaper1_1.1.29_amd64.deb ... 299s Unpacking libpaper1:amd64 (1.1.29) ... 299s Selecting previously unselected package libpaper-utils. 299s Preparing to unpack .../131-libpaper-utils_1.1.29_amd64.deb ... 299s Unpacking libpaper-utils (1.1.29) ... 299s Selecting previously unselected package libsm6:amd64. 299s Preparing to unpack .../132-libsm6_2%3a1.2.3-1build2_amd64.deb ... 299s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 299s Selecting previously unselected package libtcl8.6:amd64. 299s Preparing to unpack .../133-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 299s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 299s Selecting previously unselected package libxft2:amd64. 299s Preparing to unpack .../134-libxft2_2.3.6-1_amd64.deb ... 299s Unpacking libxft2:amd64 (2.3.6-1) ... 299s Selecting previously unselected package libxss1:amd64. 299s Preparing to unpack .../135-libxss1_1%3a1.2.3-1build2_amd64.deb ... 299s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 299s Selecting previously unselected package libtk8.6:amd64. 299s Preparing to unpack .../136-libtk8.6_8.6.14-1_amd64.deb ... 299s Unpacking libtk8.6:amd64 (8.6.14-1) ... 299s Selecting previously unselected package libudunits2-data. 299s Preparing to unpack .../137-libudunits2-data_2.2.28-7_all.deb ... 299s Unpacking libudunits2-data (2.2.28-7) ... 299s Selecting previously unselected package libudunits2-0. 299s Preparing to unpack .../138-libudunits2-0_2.2.28-7_amd64.deb ... 299s Unpacking libudunits2-0 (2.2.28-7) ... 299s Selecting previously unselected package libxt6:amd64. 299s Preparing to unpack .../139-libxt6_1%3a1.2.1-1.1_amd64.deb ... 299s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 299s Selecting previously unselected package zip. 299s Preparing to unpack .../140-zip_3.0-13_amd64.deb ... 299s Unpacking zip (3.0-13) ... 299s Selecting previously unselected package unzip. 299s Preparing to unpack .../141-unzip_6.0-28ubuntu3_amd64.deb ... 299s Unpacking unzip (6.0-28ubuntu3) ... 299s Selecting previously unselected package xdg-utils. 299s Preparing to unpack .../142-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 299s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 299s Selecting previously unselected package r-base-core. 299s Preparing to unpack .../143-r-base-core_4.3.2-1build1_amd64.deb ... 299s Unpacking r-base-core (4.3.2-1build1) ... 300s Selecting previously unselected package r-cran-littler. 300s Preparing to unpack .../144-r-cran-littler_0.3.19-1_amd64.deb ... 300s Unpacking r-cran-littler (0.3.19-1) ... 300s Selecting previously unselected package littler. 300s Preparing to unpack .../145-littler_0.3.19-1_all.deb ... 300s Unpacking littler (0.3.19-1) ... 300s Selecting previously unselected package node-bootstrap-sass. 300s Preparing to unpack .../146-node-bootstrap-sass_3.4.3-2_all.deb ... 300s Unpacking node-bootstrap-sass (3.4.3-2) ... 300s Selecting previously unselected package node-html5shiv. 300s Preparing to unpack .../147-node-html5shiv_3.7.3+dfsg-5_all.deb ... 300s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 300s Selecting previously unselected package node-normalize.css. 300s Preparing to unpack .../148-node-normalize.css_8.0.1-5_all.deb ... 300s Unpacking node-normalize.css (8.0.1-5) ... 300s Selecting previously unselected package pandoc-data. 300s Preparing to unpack .../149-pandoc-data_3.1.3-1_all.deb ... 300s Unpacking pandoc-data (3.1.3-1) ... 300s Selecting previously unselected package pandoc. 300s Preparing to unpack .../150-pandoc_3.1.3+ds-2_amd64.deb ... 300s Unpacking pandoc (3.1.3+ds-2) ... 300s Selecting previously unselected package r-cran-abind. 300s Preparing to unpack .../151-r-cran-abind_1.4-5-2_all.deb ... 300s Unpacking r-cran-abind (1.4-5-2) ... 300s Selecting previously unselected package r-cran-cli. 300s Preparing to unpack .../152-r-cran-cli_3.6.2-1_amd64.deb ... 300s Unpacking r-cran-cli (3.6.2-1) ... 301s Selecting previously unselected package r-cran-generics. 301s Preparing to unpack .../153-r-cran-generics_0.1.3-1_all.deb ... 301s Unpacking r-cran-generics (0.1.3-1) ... 301s Selecting previously unselected package r-cran-glue. 301s Preparing to unpack .../154-r-cran-glue_1.7.0-1_amd64.deb ... 301s Unpacking r-cran-glue (1.7.0-1) ... 301s Selecting previously unselected package r-cran-rlang. 301s Preparing to unpack .../155-r-cran-rlang_1.1.3-1_amd64.deb ... 301s Unpacking r-cran-rlang (1.1.3-1) ... 301s Selecting previously unselected package r-cran-lifecycle. 301s Preparing to unpack .../156-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 301s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 301s Selecting previously unselected package r-cran-magrittr. 301s Preparing to unpack .../157-r-cran-magrittr_2.0.3-1_amd64.deb ... 301s Unpacking r-cran-magrittr (2.0.3-1) ... 301s Selecting previously unselected package r-cran-fansi. 301s Preparing to unpack .../158-r-cran-fansi_1.0.5-1_amd64.deb ... 301s Unpacking r-cran-fansi (1.0.5-1) ... 301s Selecting previously unselected package r-cran-utf8. 301s Preparing to unpack .../159-r-cran-utf8_1.2.4-1_amd64.deb ... 301s Unpacking r-cran-utf8 (1.2.4-1) ... 301s Selecting previously unselected package r-cran-vctrs. 301s Preparing to unpack .../160-r-cran-vctrs_0.6.5-1_amd64.deb ... 301s Unpacking r-cran-vctrs (0.6.5-1) ... 301s Selecting previously unselected package r-cran-pillar. 301s Preparing to unpack .../161-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 301s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 301s Selecting previously unselected package r-cran-r6. 301s Preparing to unpack .../162-r-cran-r6_2.5.1-1_all.deb ... 301s Unpacking r-cran-r6 (2.5.1-1) ... 301s Selecting previously unselected package r-cran-pkgconfig. 301s Preparing to unpack .../163-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 301s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 301s Selecting previously unselected package r-cran-tibble. 301s Preparing to unpack .../164-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 301s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 301s Selecting previously unselected package r-cran-withr. 301s Preparing to unpack .../165-r-cran-withr_2.5.0-1_all.deb ... 301s Unpacking r-cran-withr (2.5.0-1) ... 301s Selecting previously unselected package r-cran-tidyselect. 301s Preparing to unpack .../166-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 301s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 301s Selecting previously unselected package r-cran-dplyr. 301s Preparing to unpack .../167-r-cran-dplyr_1.1.4-1_amd64.deb ... 301s Unpacking r-cran-dplyr (1.1.4-1) ... 301s Selecting previously unselected package r-cran-purrr. 301s Preparing to unpack .../168-r-cran-purrr_1.0.2-1_amd64.deb ... 301s Unpacking r-cran-purrr (1.0.2-1) ... 301s Selecting previously unselected package r-cran-mass. 301s Preparing to unpack .../169-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 301s Unpacking r-cran-mass (7.3-60.0.1-1) ... 301s Selecting previously unselected package r-cran-class. 301s Preparing to unpack .../170-r-cran-class_7.3-22-2_amd64.deb ... 301s Unpacking r-cran-class (7.3-22-2) ... 301s Selecting previously unselected package r-cran-proxy. 301s Preparing to unpack .../171-r-cran-proxy_0.4-27-1_amd64.deb ... 301s Unpacking r-cran-proxy (0.4-27-1) ... 301s Selecting previously unselected package r-cran-e1071. 301s Preparing to unpack .../172-r-cran-e1071_1.7-14-1_amd64.deb ... 301s Unpacking r-cran-e1071 (1.7-14-1) ... 301s Selecting previously unselected package r-cran-kernsmooth. 301s Preparing to unpack .../173-r-cran-kernsmooth_2.23-22-1_amd64.deb ... 301s Unpacking r-cran-kernsmooth (2.23-22-1) ... 301s Selecting previously unselected package r-cran-classint. 301s Preparing to unpack .../174-r-cran-classint_0.4-10+dfsg-1_amd64.deb ... 301s Unpacking r-cran-classint (0.4-10+dfsg-1) ... 301s Selecting previously unselected package r-cran-dbi. 301s Preparing to unpack .../175-r-cran-dbi_1.2.2-1_all.deb ... 301s Unpacking r-cran-dbi (1.2.2-1) ... 301s Selecting previously unselected package r-cran-pkgkitten. 301s Preparing to unpack .../176-r-cran-pkgkitten_0.2.3-1_all.deb ... 301s Unpacking r-cran-pkgkitten (0.2.3-1) ... 301s Selecting previously unselected package r-cran-rcpp. 301s Preparing to unpack .../177-r-cran-rcpp_1.0.12-1_amd64.deb ... 301s Unpacking r-cran-rcpp (1.0.12-1) ... 302s Selecting previously unselected package r-cran-wk. 302s Preparing to unpack .../178-r-cran-wk_0.9.1-1_amd64.deb ... 302s Unpacking r-cran-wk (0.9.1-1) ... 302s Selecting previously unselected package r-cran-s2. 302s Preparing to unpack .../179-r-cran-s2_1.1.6-1_amd64.deb ... 302s Unpacking r-cran-s2 (1.1.6-1) ... 302s Selecting previously unselected package r-cran-units. 302s Preparing to unpack .../180-r-cran-units_0.8-5+dfsg-1_amd64.deb ... 302s Unpacking r-cran-units (0.8-5+dfsg-1) ... 302s Selecting previously unselected package r-cran-sf. 302s Preparing to unpack .../181-r-cran-sf_1.0-15+dfsg-1_amd64.deb ... 302s Unpacking r-cran-sf (1.0-15+dfsg-1) ... 302s Selecting previously unselected package r-cran-areal. 302s Preparing to unpack .../182-r-cran-areal_0.1.8+dfsg-2_all.deb ... 302s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 302s Selecting previously unselected package r-cran-sys. 302s Preparing to unpack .../183-r-cran-sys_3.4.2-1_amd64.deb ... 302s Unpacking r-cran-sys (3.4.2-1) ... 302s Selecting previously unselected package r-cran-askpass. 302s Preparing to unpack .../184-r-cran-askpass_1.2.0-1_amd64.deb ... 302s Unpacking r-cran-askpass (1.2.0-1) ... 302s Selecting previously unselected package r-cran-base64enc. 302s Preparing to unpack .../185-r-cran-base64enc_0.1-3-3_amd64.deb ... 302s Unpacking r-cran-base64enc (0.1-3-3) ... 302s Selecting previously unselected package r-cran-bdsmatrix. 302s Preparing to unpack .../186-r-cran-bdsmatrix_1.3-6-1_amd64.deb ... 302s Unpacking r-cran-bdsmatrix (1.3-6-1) ... 302s Selecting previously unselected package r-cran-brio. 302s Preparing to unpack .../187-r-cran-brio_1.1.4-1_amd64.deb ... 302s Unpacking r-cran-brio (1.1.4-1) ... 302s Selecting previously unselected package r-cran-fastmap. 302s Preparing to unpack .../188-r-cran-fastmap_1.1.1-1_amd64.deb ... 302s Unpacking r-cran-fastmap (1.1.1-1) ... 302s Selecting previously unselected package r-cran-cachem. 302s Preparing to unpack .../189-r-cran-cachem_1.0.8-1_amd64.deb ... 302s Unpacking r-cran-cachem (1.0.8-1) ... 302s Selecting previously unselected package r-cran-digest. 302s Preparing to unpack .../190-r-cran-digest_0.6.34-1_amd64.deb ... 302s Unpacking r-cran-digest (0.6.34-1) ... 302s Selecting previously unselected package r-cran-ellipsis. 302s Preparing to unpack .../191-r-cran-ellipsis_0.3.2-2_amd64.deb ... 302s Unpacking r-cran-ellipsis (0.3.2-2) ... 302s Selecting previously unselected package r-cran-htmltools. 302s Preparing to unpack .../192-r-cran-htmltools_0.5.7-1_amd64.deb ... 302s Unpacking r-cran-htmltools (0.5.7-1) ... 302s Selecting previously unselected package r-cran-jquerylib. 302s Preparing to unpack .../193-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 302s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 302s Selecting previously unselected package r-cran-jsonlite. 302s Preparing to unpack .../194-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 302s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 302s Selecting previously unselected package r-cran-memoise. 302s Preparing to unpack .../195-r-cran-memoise_2.0.1-1_all.deb ... 302s Unpacking r-cran-memoise (2.0.1-1) ... 302s Selecting previously unselected package r-cran-mime. 302s Preparing to unpack .../196-r-cran-mime_0.12-1_amd64.deb ... 302s Unpacking r-cran-mime (0.12-1) ... 302s Selecting previously unselected package r-cran-fs. 302s Preparing to unpack .../197-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 302s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 302s Selecting previously unselected package r-cran-rappdirs. 302s Preparing to unpack .../198-r-cran-rappdirs_0.3.3-1_amd64.deb ... 302s Unpacking r-cran-rappdirs (0.3.3-1) ... 303s Selecting previously unselected package r-cran-sass. 303s Preparing to unpack .../199-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 303s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 303s Selecting previously unselected package r-cran-bslib. 303s Preparing to unpack .../200-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 303s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 303s Selecting previously unselected package r-cran-cairo. 303s Preparing to unpack .../201-r-cran-cairo_1.6-2-1_amd64.deb ... 303s Unpacking r-cran-cairo (1.6-2-1) ... 303s Selecting previously unselected package r-cran-ps. 303s Preparing to unpack .../202-r-cran-ps_1.7.6-1_amd64.deb ... 303s Unpacking r-cran-ps (1.7.6-1) ... 303s Selecting previously unselected package r-cran-processx. 303s Preparing to unpack .../203-r-cran-processx_3.8.3-1_amd64.deb ... 303s Unpacking r-cran-processx (3.8.3-1) ... 303s Selecting previously unselected package r-cran-callr. 303s Preparing to unpack .../204-r-cran-callr_3.7.3-2_all.deb ... 303s Unpacking r-cran-callr (3.7.3-2) ... 303s Selecting previously unselected package r-cran-cluster. 303s Preparing to unpack .../205-r-cran-cluster_2.1.6-1_amd64.deb ... 303s Unpacking r-cran-cluster (2.1.6-1) ... 303s Selecting previously unselected package r-cran-clue. 303s Preparing to unpack .../206-r-cran-clue_0.3-65-1_amd64.deb ... 303s Unpacking r-cran-clue (0.3-65-1) ... 303s Selecting previously unselected package r-cran-codetools. 303s Preparing to unpack .../207-r-cran-codetools_0.2-19-1_all.deb ... 303s Unpacking r-cran-codetools (0.2-19-1) ... 303s Selecting previously unselected package r-cran-collapse. 303s Preparing to unpack .../208-r-cran-collapse_2.0.10-1_amd64.deb ... 303s Unpacking r-cran-collapse (2.0.10-1) ... 303s Selecting previously unselected package r-cran-colorspace. 303s Preparing to unpack .../209-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 303s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 303s Selecting previously unselected package r-cran-commonmark. 303s Preparing to unpack .../210-r-cran-commonmark_1.9.1-1_amd64.deb ... 303s Unpacking r-cran-commonmark (1.9.1-1) ... 303s Selecting previously unselected package r-cran-lazyeval. 303s Preparing to unpack .../211-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 303s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 303s Selecting previously unselected package r-cran-rex. 303s Preparing to unpack .../212-r-cran-rex_1.2.1-1_all.deb ... 303s Unpacking r-cran-rex (1.2.1-1) ... 303s Selecting previously unselected package r-cran-curl. 303s Preparing to unpack .../213-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 303s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 303s Selecting previously unselected package r-cran-openssl. 303s Preparing to unpack .../214-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 303s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 303s Selecting previously unselected package r-cran-httr. 303s Preparing to unpack .../215-r-cran-httr_1.4.7+dfsg-1_all.deb ... 303s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 303s Selecting previously unselected package r-cran-crayon. 303s Preparing to unpack .../216-r-cran-crayon_1.5.2-1_all.deb ... 303s Unpacking r-cran-crayon (1.5.2-1) ... 303s Selecting previously unselected package r-cran-yaml. 303s Preparing to unpack .../217-r-cran-yaml_2.3.8-1_amd64.deb ... 303s Unpacking r-cran-yaml (2.3.8-1) ... 303s Selecting previously unselected package r-cran-covr. 303s Preparing to unpack .../218-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 303s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 303s Selecting previously unselected package r-cran-cpp11. 303s Preparing to unpack .../219-r-cran-cpp11_0.4.7-1_all.deb ... 303s Unpacking r-cran-cpp11 (0.4.7-1) ... 304s Selecting previously unselected package r-cran-cubelyr. 304s Preparing to unpack .../220-r-cran-cubelyr_1.0.2-1_all.deb ... 304s Unpacking r-cran-cubelyr (1.0.2-1) ... 304s Selecting previously unselected package r-cran-deldir. 304s Preparing to unpack .../221-r-cran-deldir_2.0-4-1_amd64.deb ... 304s Unpacking r-cran-deldir (2.0-4-1) ... 304s Selecting previously unselected package r-cran-desc. 304s Preparing to unpack .../222-r-cran-desc_1.4.3-1_all.deb ... 304s Unpacking r-cran-desc (1.4.3-1) ... 304s Selecting previously unselected package r-cran-diffobj. 304s Preparing to unpack .../223-r-cran-diffobj_0.3.5-1_amd64.deb ... 304s Unpacking r-cran-diffobj (0.3.5-1) ... 304s Selecting previously unselected package r-cran-evaluate. 304s Preparing to unpack .../224-r-cran-evaluate_0.23-1_all.deb ... 304s Unpacking r-cran-evaluate (0.23-1) ... 304s Selecting previously unselected package r-cran-lattice. 304s Preparing to unpack .../225-r-cran-lattice_0.22-5-1_amd64.deb ... 304s Unpacking r-cran-lattice (0.22-5-1) ... 304s Selecting previously unselected package r-cran-sp. 304s Preparing to unpack .../226-r-cran-sp_1%3a2.1-2+dfsg-1_amd64.deb ... 304s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 304s Selecting previously unselected package r-cran-terra. 304s Preparing to unpack .../227-r-cran-terra_1.7-65-1_amd64.deb ... 304s Unpacking r-cran-terra (1.7-65-1) ... 304s Selecting previously unselected package r-cran-raster. 304s Preparing to unpack .../228-r-cran-raster_3.6-26-1_amd64.deb ... 304s Unpacking r-cran-raster (3.6-26-1) ... 304s Selecting previously unselected package r-cran-exactextractr. 304s Preparing to unpack .../229-r-cran-exactextractr_0.10.0-1_amd64.deb ... 304s Unpacking r-cran-exactextractr (0.10.0-1) ... 304s Selecting previously unselected package r-cran-farver. 304s Preparing to unpack .../230-r-cran-farver_2.1.1-1_amd64.deb ... 304s Unpacking r-cran-farver (2.1.1-1) ... 304s Selecting previously unselected package r-cran-fnn. 304s Preparing to unpack .../231-r-cran-fnn_1.1.4-1_amd64.deb ... 304s Unpacking r-cran-fnn (1.1.4-1) ... 304s Selecting previously unselected package r-cran-fontawesome. 304s Preparing to unpack .../232-r-cran-fontawesome_0.5.2-1_all.deb ... 304s Unpacking r-cran-fontawesome (0.5.2-1) ... 304s Selecting previously unselected package r-cran-formula. 304s Preparing to unpack .../233-r-cran-formula_1.2-5-1_all.deb ... 304s Unpacking r-cran-formula (1.2-5-1) ... 304s Selecting previously unselected package r-cran-globals. 304s Preparing to unpack .../234-r-cran-globals_0.16.2-1_all.deb ... 304s Unpacking r-cran-globals (0.16.2-1) ... 304s Selecting previously unselected package r-cran-listenv. 304s Preparing to unpack .../235-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 304s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 304s Selecting previously unselected package r-cran-parallelly. 304s Preparing to unpack .../236-r-cran-parallelly_1.37.1-1_amd64.deb ... 304s Unpacking r-cran-parallelly (1.37.1-1) ... 304s Selecting previously unselected package r-cran-future. 304s Preparing to unpack .../237-r-cran-future_1.33.1+dfsg-1_all.deb ... 304s Unpacking r-cran-future (1.33.1+dfsg-1) ... 304s Selecting previously unselected package r-cran-future.apply. 304s Preparing to unpack .../238-r-cran-future.apply_1.11.1+dfsg-1_all.deb ... 304s Unpacking r-cran-future.apply (1.11.1+dfsg-1) ... 304s Selecting previously unselected package r-cran-gtable. 304s Preparing to unpack .../239-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 304s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 304s Selecting previously unselected package r-cran-isoband. 304s Preparing to unpack .../240-r-cran-isoband_0.2.7-1_amd64.deb ... 304s Unpacking r-cran-isoband (0.2.7-1) ... 304s Selecting previously unselected package r-cran-nlme. 304s Preparing to unpack .../241-r-cran-nlme_3.1.164-1_amd64.deb ... 304s Unpacking r-cran-nlme (3.1.164-1) ... 304s Selecting previously unselected package r-cran-matrix. 304s Preparing to unpack .../242-r-cran-matrix_1.6-5-1_amd64.deb ... 304s Unpacking r-cran-matrix (1.6-5-1) ... 305s Selecting previously unselected package r-cran-mgcv. 305s Preparing to unpack .../243-r-cran-mgcv_1.9-1-1_amd64.deb ... 305s Unpacking r-cran-mgcv (1.9-1-1) ... 305s Selecting previously unselected package r-cran-labeling. 305s Preparing to unpack .../244-r-cran-labeling_0.4.3-1_all.deb ... 305s Unpacking r-cran-labeling (0.4.3-1) ... 305s Selecting previously unselected package r-cran-munsell. 305s Preparing to unpack .../245-r-cran-munsell_0.5.0-2build1_all.deb ... 305s Unpacking r-cran-munsell (0.5.0-2build1) ... 305s Selecting previously unselected package r-cran-rcolorbrewer. 305s Preparing to unpack .../246-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 305s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 305s Selecting previously unselected package r-cran-viridislite. 305s Preparing to unpack .../247-r-cran-viridislite_0.4.2-2_all.deb ... 305s Unpacking r-cran-viridislite (0.4.2-2) ... 305s Selecting previously unselected package r-cran-scales. 305s Preparing to unpack .../248-r-cran-scales_1.3.0-1_all.deb ... 305s Unpacking r-cran-scales (1.3.0-1) ... 305s Selecting previously unselected package r-cran-ggplot2. 305s Preparing to unpack .../249-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 305s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 305s Selecting previously unselected package r-cran-tweenr. 305s Preparing to unpack .../250-r-cran-tweenr_2.0.2-1_amd64.deb ... 305s Unpacking r-cran-tweenr (2.0.2-1) ... 305s Selecting previously unselected package r-cran-polyclip. 305s Preparing to unpack .../251-r-cran-polyclip_1.10-6-1_amd64.deb ... 305s Unpacking r-cran-polyclip (1.10-6-1) ... 305s Selecting previously unselected package r-cran-systemfonts. 305s Preparing to unpack .../252-r-cran-systemfonts_1.0.5-1_amd64.deb ... 305s Unpacking r-cran-systemfonts (1.0.5-1) ... 305s Selecting previously unselected package r-cran-rcppeigen. 305s Preparing to unpack .../253-r-cran-rcppeigen_0.3.3.9.4-1_amd64.deb ... 305s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 305s Selecting previously unselected package r-cran-ggforce. 305s Preparing to unpack .../254-r-cran-ggforce_0.4.1-1_amd64.deb ... 305s Unpacking r-cran-ggforce (0.4.1-1) ... 305s Selecting previously unselected package r-cran-stringi. 305s Preparing to unpack .../255-r-cran-stringi_1.8.3-1_amd64.deb ... 305s Unpacking r-cran-stringi (1.8.3-1) ... 305s Selecting previously unselected package r-cran-stringr. 305s Preparing to unpack .../256-r-cran-stringr_1.5.1-1_all.deb ... 305s Unpacking r-cran-stringr (1.5.1-1) ... 305s Selecting previously unselected package r-cran-ggthemes. 305s Preparing to unpack .../257-r-cran-ggthemes_5.1.0-1_all.deb ... 305s Unpacking r-cran-ggthemes (5.1.0-1) ... 305s Selecting previously unselected package r-cran-goftest. 305s Preparing to unpack .../258-r-cran-goftest_1.2-3-1_amd64.deb ... 305s Unpacking r-cran-goftest (1.2-3-1) ... 305s Selecting previously unselected package r-cran-gridextra. 305s Preparing to unpack .../259-r-cran-gridextra_2.3-3build1_all.deb ... 305s Unpacking r-cran-gridextra (2.3-3build1) ... 305s Selecting previously unselected package r-cran-zoo. 306s Preparing to unpack .../260-r-cran-zoo_1.8-12-2_amd64.deb ... 306s Unpacking r-cran-zoo (1.8-12-2) ... 306s Selecting previously unselected package r-cran-sftime. 306s Preparing to unpack .../261-r-cran-sftime_0.2-0-6_all.deb ... 306s Unpacking r-cran-sftime (0.2-0-6) ... 306s Selecting previously unselected package r-cran-xts. 306s Preparing to unpack .../262-r-cran-xts_0.13.2-1_amd64.deb ... 306s Unpacking r-cran-xts (0.13.2-1) ... 306s Selecting previously unselected package r-cran-intervals. 306s Preparing to unpack .../263-r-cran-intervals_0.15.4-1_amd64.deb ... 306s Unpacking r-cran-intervals (0.15.4-1) ... 306s Selecting previously unselected package r-cran-spacetime. 306s Preparing to unpack .../264-r-cran-spacetime_1.3-1-1_all.deb ... 306s Unpacking r-cran-spacetime (1.3-1-1) ... 306s Selecting previously unselected package r-cran-stars. 306s Preparing to unpack .../265-r-cran-stars_0.6-4-1_all.deb ... 306s Unpacking r-cran-stars (0.6-4-1) ... 306s Selecting previously unselected package r-cran-gstat. 306s Preparing to unpack .../266-r-cran-gstat_2.1-1-2_amd64.deb ... 306s Unpacking r-cran-gstat (2.1-1-2) ... 306s Selecting previously unselected package r-cran-xfun. 306s Preparing to unpack .../267-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 306s Unpacking r-cran-xfun (0.41+dfsg-1) ... 306s Selecting previously unselected package r-cran-highr. 306s Preparing to unpack .../268-r-cran-highr_0.10+dfsg-1_all.deb ... 306s Unpacking r-cran-highr (0.10+dfsg-1) ... 306s Selecting previously unselected package r-cran-later. 306s Preparing to unpack .../269-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 306s Unpacking r-cran-later (1.3.2+dfsg-1) ... 306s Selecting previously unselected package r-cran-promises. 306s Preparing to unpack .../270-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 306s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 306s Selecting previously unselected package r-cran-httpuv. 306s Preparing to unpack .../271-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 306s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 306s Selecting previously unselected package libjs-mathjax. 306s Preparing to unpack .../272-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 306s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 307s Selecting previously unselected package r-cran-knitr. 307s Preparing to unpack .../273-r-cran-knitr_1.45+dfsg-1_all.deb ... 307s Unpacking r-cran-knitr (1.45+dfsg-1) ... 307s Selecting previously unselected package r-cran-lmtest. 307s Preparing to unpack .../274-r-cran-lmtest_0.9.40-1_amd64.deb ... 307s Unpacking r-cran-lmtest (0.9.40-1) ... 307s Selecting previously unselected package r-cran-lwgeom. 307s Preparing to unpack .../275-r-cran-lwgeom_0.2-13-3_amd64.deb ... 307s Unpacking r-cran-lwgeom (0.2-13-3) ... 307s Selecting previously unselected package r-cran-maps. 307s Preparing to unpack .../276-r-cran-maps_3.4.2-1_amd64.deb ... 307s Unpacking r-cran-maps (3.4.2-1) ... 307s Selecting previously unselected package r-cran-mapdata. 307s Preparing to unpack .../277-r-cran-mapdata_2.3.1-1_amd64.deb ... 307s Unpacking r-cran-mapdata (2.3.1-1) ... 307s Selecting previously unselected package r-cran-misctools. 307s Preparing to unpack .../278-r-cran-misctools_0.6-28-1_all.deb ... 307s Unpacking r-cran-misctools (0.6-28-1) ... 307s Selecting previously unselected package r-cran-sandwich. 307s Preparing to unpack .../279-r-cran-sandwich_3.1-0-1_all.deb ... 307s Unpacking r-cran-sandwich (3.1-0-1) ... 307s Selecting previously unselected package r-cran-maxlik. 307s Preparing to unpack .../280-r-cran-maxlik_1.5-2-1_all.deb ... 307s Unpacking r-cran-maxlik (1.5-2-1) ... 307s Selecting previously unselected package r-cran-rnetcdf. 307s Preparing to unpack .../281-r-cran-rnetcdf_2.9-1-1_amd64.deb ... 307s Unpacking r-cran-rnetcdf (2.9-1-1) ... 307s Selecting previously unselected package r-cran-tidyr. 307s Preparing to unpack .../282-r-cran-tidyr_1.3.1-1_amd64.deb ... 307s Unpacking r-cran-tidyr (1.3.1-1) ... 307s Selecting previously unselected package r-cran-ncmeta. 307s Preparing to unpack .../283-r-cran-ncmeta_0.3.6-1_all.deb ... 307s Unpacking r-cran-ncmeta (0.3.6-1) ... 307s Selecting previously unselected package r-cran-ncdfgeom. 307s Preparing to unpack .../284-r-cran-ncdfgeom_1.1.6+dfsg-1_all.deb ... 307s Unpacking r-cran-ncdfgeom (1.1.6+dfsg-1) ... 307s Selecting previously unselected package r-cran-pbapply. 307s Preparing to unpack .../285-r-cran-pbapply_1.7-2-1_all.deb ... 307s Unpacking r-cran-pbapply (1.7-2-1) ... 307s Selecting previously unselected package r-cran-pcict. 307s Preparing to unpack .../286-r-cran-pcict_0.5-4.4-1_amd64.deb ... 307s Unpacking r-cran-pcict (0.5-4.4-1) ... 308s Selecting previously unselected package r-cran-pkgbuild. 308s Preparing to unpack .../287-r-cran-pkgbuild_1.4.3-1_all.deb ... 308s Unpacking r-cran-pkgbuild (1.4.3-1) ... 308s Selecting previously unselected package r-cran-rprojroot. 308s Preparing to unpack .../288-r-cran-rprojroot_2.0.4-1_all.deb ... 308s Unpacking r-cran-rprojroot (2.0.4-1) ... 308s Selecting previously unselected package r-cran-pkgload. 308s Preparing to unpack .../289-r-cran-pkgload_1.3.4-1_all.deb ... 308s Unpacking r-cran-pkgload (1.3.4-1) ... 308s Selecting previously unselected package r-cran-rbibutils. 308s Preparing to unpack .../290-r-cran-rbibutils_2.2.16-1_amd64.deb ... 308s Unpacking r-cran-rbibutils (2.2.16-1) ... 308s Selecting previously unselected package r-cran-rdpack. 308s Preparing to unpack .../291-r-cran-rdpack_2.6-1_all.deb ... 308s Unpacking r-cran-rdpack (2.6-1) ... 308s Selecting previously unselected package r-cran-plm. 308s Preparing to unpack .../292-r-cran-plm_2.6-3-1_all.deb ... 308s Unpacking r-cran-plm (2.6-3-1) ... 308s Selecting previously unselected package r-cran-praise. 308s Preparing to unpack .../293-r-cran-praise_1.0.0-4build1_all.deb ... 308s Unpacking r-cran-praise (1.0.0-4build1) ... 308s Selecting previously unselected package r-cran-randomforest. 308s Preparing to unpack .../294-r-cran-randomforest_4.7-1.1-1_amd64.deb ... 308s Unpacking r-cran-randomforest (4.7-1.1-1) ... 308s Selecting previously unselected package r-cran-rematch2. 308s Preparing to unpack .../295-r-cran-rematch2_2.1.2-2build1_all.deb ... 308s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 308s Selecting previously unselected package r-cran-tinytex. 308s Preparing to unpack .../296-r-cran-tinytex_0.49-1_all.deb ... 308s Unpacking r-cran-tinytex (0.49-1) ... 308s Selecting previously unselected package libjs-modernizr. 308s Preparing to unpack .../297-libjs-modernizr_2.6.2+ds1-5_all.deb ... 308s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 308s Selecting previously unselected package r-cran-xtable. 308s Preparing to unpack .../298-r-cran-xtable_1%3a1.8-4-2_all.deb ... 308s Unpacking r-cran-xtable (1:1.8-4-2) ... 308s Selecting previously unselected package r-cran-sourcetools. 308s Preparing to unpack .../299-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 308s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 308s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 308s Preparing to unpack .../300-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 308s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 308s Selecting previously unselected package r-cran-shiny. 308s Preparing to unpack .../301-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 308s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 308s Selecting previously unselected package r-cran-rmarkdown. 308s Preparing to unpack .../302-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 308s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 308s Selecting previously unselected package r-cran-survival. 308s Preparing to unpack .../303-r-cran-survival_3.5-8-1_amd64.deb ... 308s Unpacking r-cran-survival (3.5-8-1) ... 308s Selecting previously unselected package r-cran-rpart. 308s Preparing to unpack .../304-r-cran-rpart_4.1.23-1_amd64.deb ... 308s Unpacking r-cran-rpart (4.1.23-1) ... 308s Selecting previously unselected package r-cran-spatstat.utils. 308s Preparing to unpack .../305-r-cran-spatstat.utils_3.0-4-1_amd64.deb ... 308s Unpacking r-cran-spatstat.utils (3.0-4-1) ... 308s Selecting previously unselected package r-cran-spatstat.data. 308s Preparing to unpack .../306-r-cran-spatstat.data_3.0-4-1_all.deb ... 308s Unpacking r-cran-spatstat.data (3.0-4-1) ... 308s Selecting previously unselected package r-cran-spatstat.geom. 308s Preparing to unpack .../307-r-cran-spatstat.geom_3.2-8-1_amd64.deb ... 308s Unpacking r-cran-spatstat.geom (3.2-8-1) ... 309s Selecting previously unselected package r-cran-spatstat.random. 309s Preparing to unpack .../308-r-cran-spatstat.random_3.2-2-1_amd64.deb ... 309s Unpacking r-cran-spatstat.random (3.2-2-1) ... 309s Selecting previously unselected package r-cran-tensor. 309s Preparing to unpack .../309-r-cran-tensor_1.5-4_all.deb ... 309s Unpacking r-cran-tensor (1.5-4) ... 309s Selecting previously unselected package r-cran-spatstat.sparse. 309s Preparing to unpack .../310-r-cran-spatstat.sparse_3.0-3-1_amd64.deb ... 309s Unpacking r-cran-spatstat.sparse (3.0-3-1) ... 309s Selecting previously unselected package r-cran-spatstat.explore. 309s Preparing to unpack .../311-r-cran-spatstat.explore_3.2-5-1_amd64.deb ... 309s Unpacking r-cran-spatstat.explore (3.2-5-1) ... 309s Selecting previously unselected package r-cran-spatstat.model. 309s Preparing to unpack .../312-r-cran-spatstat.model_3.2-8-1_amd64.deb ... 309s Unpacking r-cran-spatstat.model (3.2-8-1) ... 309s Selecting previously unselected package r-cran-spatstat.linnet. 309s Preparing to unpack .../313-r-cran-spatstat.linnet_3.1-3-1_amd64.deb ... 309s Unpacking r-cran-spatstat.linnet (3.1-3-1) ... 309s Selecting previously unselected package r-cran-spatstat. 309s Preparing to unpack .../314-r-cran-spatstat_3.0-7-1_amd64.deb ... 309s Unpacking r-cran-spatstat (3.0-7-1) ... 309s Selecting previously unselected package r-cran-waldo. 309s Preparing to unpack .../315-r-cran-waldo_0.5.2-1build1_all.deb ... 309s Unpacking r-cran-waldo (0.5.2-1build1) ... 309s Selecting previously unselected package r-cran-testthat. 309s Preparing to unpack .../316-r-cran-testthat_3.2.1-1_amd64.deb ... 309s Unpacking r-cran-testthat (3.2.1-1) ... 309s Selecting previously unselected package r-cran-viridis. 309s Preparing to unpack .../317-r-cran-viridis_0.6.5-1_all.deb ... 309s Unpacking r-cran-viridis (0.6.5-1) ... 309s Setting up libjs-json (0~20221030+~1.0.8-1) ... 309s Setting up javascript-common (11+nmu1) ... 309s Setting up libgraphite2-3:amd64 (1.3.14-2) ... 309s Setting up liblcms2-2:amd64 (2.14-2) ... 309s Setting up libpixman-1-0:amd64 (0.42.2-1) ... 309s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ... 309s Setting up libpaper1:amd64 (1.1.29) ... 309s 309s Creating config file /etc/papersize with new version 309s Setting up mysql-common (5.8+1.1.0) ... 309s update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode 309s Setting up libmysqlclient21:amd64 (8.0.36-1) ... 309s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 309s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 309s Setting up libxerces-c3.2:amd64 (3.2.4+debian-1.1) ... 309s Setting up proj-data (9.3.1-1) ... 309s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 309s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 309s Setting up libdatrie1:amd64 (0.2.13-3) ... 309s Setting up libjs-popper.js (1.16.1+ds-6) ... 309s Setting up libogdi4.1 (4.1.1+ds-1) ... 309s Setting up libminizip1:amd64 (1:1.3.dfsg-3ubuntu1) ... 309s Setting up libxcb-render0:amd64 (1.15-1) ... 309s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 309s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 309s Setting up unzip (6.0-28ubuntu3) ... 309s Setting up x11-common (1:7.7+23ubuntu2) ... 310s Setting up node-html5shiv (3.7.3+dfsg-5) ... 310s Setting up libpq5:amd64 (16.2-1) ... 310s Setting up libdeflate0:amd64 (1.19-1) ... 310s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 310s Setting up libqhull-r8.0:amd64 (2020.2-6) ... 310s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 310s Setting up libxcb-shm0:amd64 (1.15-1) ... 310s Setting up libpaper-utils (1.1.29) ... 310s Setting up libcfitsio10:amd64 (4.3.1-1) ... 310s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ... 310s Setting up libjs-modernizr (2.6.2+ds1-5) ... 310s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ... 310s Setting up libaec0:amd64 (1.1.2-1) ... 310s Setting up gdal-data (3.8.4+dfsg-1) ... 310s Setting up libsnappy1v5:amd64 (1.1.10-1) ... 310s Setting up libjs-es5-shim (4.6.7-2) ... 310s Setting up libgeos3.12.1:amd64 (3.12.1-1) ... 310s Setting up zip (3.0-13) ... 310s Setting up libblas3:amd64 (3.12.0-3) ... 310s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 310s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 310s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ... 310s Setting up libjs-d3 (3.5.17-4) ... 310s Setting up fonts-dejavu-mono (2.37-8) ... 310s Setting up libmpc3:amd64 (1.3.1-1) ... 310s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ... 310s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... 310s Setting up libgeos-c1v5:amd64 (3.12.1-1) ... 310s Setting up fonts-dejavu-core (2.37-8) ... 310s Setting up unixodbc-common (2.3.12-1) ... 310s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 310s Setting up libltdl7:amd64 (2.4.7-7) ... 310s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 310s Setting up libwebp7:amd64 (1.3.2-0.4) ... 310s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ... 310s Setting up libgif7:amd64 (5.2.1-2.5) ... 310s Setting up libodbc2:amd64 (2.3.12-1) ... 310s Setting up liburiparser1:amd64 (0.9.7+dfsg-2) ... 310s Setting up librttopo1:amd64 (1.1.0-3) ... 310s Setting up libudunits2-data (2.2.28-7) ... 310s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 310s Setting up libdav1d7:amd64 (1.4.0-1) ... 310s Setting up libfreexl1:amd64 (2.0.0-1) ... 310s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 310s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 310s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 310s Setting up libfyba0:amd64 (4.1.1-8) ... 310s Setting up libkmlbase1:amd64 (1.3.0-10) ... 310s Setting up libblosc1:amd64 (1.21.5+ds-1) ... 310s Setting up liblua5.4-0:amd64 (5.4.6-3) ... 310s Setting up libopenjp2-7:amd64 (2.5.0-2) ... 310s Setting up libharfbuzz0b:amd64 (8.3.0-2) ... 310s Setting up libthai-data (0.1.29-2) ... 310s Setting up node-bootstrap-sass (3.4.3-2) ... 310s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 310s Setting up libxss1:amd64 (1:1.2.3-1build2) ... 310s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 310s Setting up pandoc-data (3.1.3-1) ... 310s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ... 310s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 310s Setting up libisl23:amd64 (0.26-3) ... 310s Setting up libde265-0:amd64 (1.0.15-1) ... 310s Setting up libc-dev-bin (2.39-0ubuntu6) ... 310s Setting up node-normalize.css (8.0.1-5) ... 310s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 310s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 310s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 310s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 310s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 310s Setting up libsz2:amd64 (1.1.2-1) ... 310s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 310s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 310s Setting up gdal-plugins:amd64 (3.8.4+dfsg-1) ... 310s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 310s Setting up libkmldom1:amd64 (1.3.0-10) ... 310s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 310s Setting up libice6:amd64 (2:1.0.10-1build2) ... 310s Setting up libodbcinst2:amd64 (2.3.12-1) ... 310s Setting up liblapack3:amd64 (3.12.0-3) ... 310s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 310s Setting up libudunits2-0 (2.2.28-7) ... 310s Setting up libkmlengine1:amd64 (1.3.0-10) ... 310s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 310s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 310s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 310s Setting up libarpack2:amd64 (3.9.1-1) ... 310s Setting up libsuperlu6:amd64 (6.0.1+dfsg1-1) ... 310s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 310s Setting up libthai0:amd64 (0.1.29-2) ... 310s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 310s Setting up pandoc (3.1.3+ds-2) ... 310s Setting up libhdf4-0-alt (4.2.16-3) ... 310s Setting up libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 310s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 310s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 310s Setting up libc6-dev:amd64 (2.39-0ubuntu6) ... 310s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 310s Setting up libsm6:amd64 (2:1.2.3-1build2) ... 310s Setting up libarmadillo12 (1:12.6.7+dfsg-1) ... 310s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 310s Setting up libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 310s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 310s Setting up fontconfig (2.15.0-1ubuntu1) ... 312s Regenerating fonts cache... done. 312s Setting up libxft2:amd64 (2.3.6-1) ... 312s Setting up cpp-13 (13.2.0-17ubuntu2) ... 312s Setting up libproj25:amd64 (9.3.1-1) ... 312s Setting up libpoppler134:amd64 (24.02.0-1ubuntu2) ... 312s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 312s Setting up libtk8.6:amd64 (8.6.14-1) ... 312s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... 312s Setting up libcairo2:amd64 (1.18.0-1) ... 312s Setting up libgeotiff5:amd64 (1.7.1-5) ... 312s Setting up libspatialite8:amd64 (5.1.0-1) ... 312s Setting up gcc-13 (13.2.0-17ubuntu2) ... 312s Setting up libxt6:amd64 (1:1.2.1-1.1) ... 312s Setting up libnetcdf19:amd64 (1:4.9.2-3ubuntu1) ... 312s Setting up cpp (4:13.2.0-7ubuntu1) ... 312s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 312s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 312s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 312s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 312s Setting up gcc (4:13.2.0-7ubuntu1) ... 312s Setting up r-base-core (4.3.2-1build1) ... 312s 312s Creating config file /etc/R/Renviron with new version 312s Setting up r-cran-crayon (1.5.2-1) ... 312s Setting up r-cran-labeling (0.4.3-1) ... 312s Setting up r-cran-sourcetools (0.1.7-1-1) ... 312s Setting up r-cran-lattice (0.22-5-1) ... 312s Setting up r-cran-ps (1.7.6-1) ... 312s Setting up r-cran-nlme (3.1.164-1) ... 312s Setting up r-cran-farver (2.1.1-1) ... 312s Setting up r-cran-pbapply (1.7-2-1) ... 312s Setting up r-cran-formula (1.2-5-1) ... 312s Setting up r-cran-intervals (0.15.4-1) ... 312s Setting up r-cran-spatstat.utils (3.0-4-1) ... 312s Setting up r-cran-viridislite (0.4.2-2) ... 312s Setting up r-cran-cluster (2.1.6-1) ... 312s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 312s Setting up r-cran-tensor (1.5-4) ... 312s Setting up r-cran-lazyeval (0.2.2-1build1) ... 312s Setting up r-cran-wk (0.9.1-1) ... 312s Setting up r-cran-commonmark (1.9.1-1) ... 312s Setting up r-cran-proxy (0.4-27-1) ... 312s Setting up r-cran-r6 (2.5.1-1) ... 312s Setting up r-cran-pkgkitten (0.2.3-1) ... 312s Setting up r-cran-magrittr (2.0.3-1) ... 312s Setting up r-cran-rappdirs (0.3.3-1) ... 312s Setting up r-cran-littler (0.3.19-1) ... 312s Setting up r-cran-fs (1.6.3+dfsg-1) ... 312s Setting up r-cran-rcpp (1.0.12-1) ... 312s Setting up r-cran-curl (5.2.0+dfsg-1) ... 312s Setting up r-cran-codetools (0.2-19-1) ... 312s Setting up g++-13 (13.2.0-17ubuntu2) ... 312s Setting up r-cran-brio (1.1.4-1) ... 312s Setting up r-cran-diffobj (0.3.5-1) ... 312s Setting up r-cran-maps (3.4.2-1) ... 312s Setting up r-cran-rlang (1.1.3-1) ... 312s Setting up r-cran-listenv (0.9.1+dfsg-1) ... 312s Setting up littler (0.3.19-1) ... 312s Setting up r-cran-xfun (0.41+dfsg-1) ... 312s Setting up r-cran-sys (3.4.2-1) ... 312s Setting up r-cran-withr (2.5.0-1) ... 312s Setting up r-cran-processx (3.8.3-1) ... 312s Setting up r-cran-mime (0.12-1) ... 312s Setting up r-cran-praise (1.0.0-4build1) ... 312s Setting up r-cran-generics (0.1.3-1) ... 312s Setting up r-cran-base64enc (0.1-3-3) ... 312s Setting up r-cran-abind (1.4-5-2) ... 312s Setting up r-cran-s2 (1.1.6-1) ... 312s Setting up r-cran-digest (0.6.34-1) ... 312s Setting up r-cran-yaml (2.3.8-1) ... 312s Setting up r-cran-evaluate (0.23-1) ... 312s Setting up r-cran-dbi (1.2.2-1) ... 312s Setting up r-cran-highr (0.10+dfsg-1) ... 312s Setting up r-cran-fansi (1.0.5-1) ... 312s Setting up r-cran-pcict (0.5-4.4-1) ... 312s Setting up r-cran-mass (7.3-60.0.1-1) ... 312s Setting up r-cran-cairo (1.6-2-1) ... 312s Setting up r-cran-mapdata (2.3.1-1) ... 312s Setting up r-cran-collapse (2.0.10-1) ... 312s Setting up r-cran-bdsmatrix (1.3-6-1) ... 312s Setting up r-cran-glue (1.7.0-1) ... 312s Setting up r-cran-xtable (1:1.8-4-2) ... 312s Setting up r-cran-polyclip (1.10-6-1) ... 312s Setting up r-cran-clue (0.3-65-1) ... 312s Setting up r-cran-cli (3.6.2-1) ... 312s Setting up r-cran-rbibutils (2.2.16-1) ... 312s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 312s Setting up r-cran-rprojroot (2.0.4-1) ... 312s Setting up r-cran-fnn (1.1.4-1) ... 312s Setting up r-cran-deldir (2.0-4-1) ... 312s Setting up r-cran-goftest (1.2-3-1) ... 312s Setting up r-cran-randomforest (4.7-1.1-1) ... 312s Setting up r-cran-askpass (1.2.0-1) ... 312s Setting up r-cran-fastmap (1.1.1-1) ... 312s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 312s Setting up r-cran-rnetcdf (2.9-1-1) ... 312s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 312s Setting up r-cran-sp (1:2.1-2+dfsg-1) ... 312s Setting up r-cran-utf8 (1.2.4-1) ... 312s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 312s Setting up r-cran-parallelly (1.37.1-1) ... 312s Setting up r-cran-stringi (1.8.3-1) ... 312s Setting up r-cran-rex (1.2.1-1) ... 312s Setting up r-cran-cpp11 (0.4.7-1) ... 312s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 312s Setting up r-cran-isoband (0.2.7-1) ... 312s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 312s Setting up r-cran-zoo (1.8-12-2) ... 312s Setting up r-cran-units (0.8-5+dfsg-1) ... 312s Setting up r-cran-later (1.3.2+dfsg-1) ... 312s Setting up r-cran-matrix (1.6-5-1) ... 312s Setting up r-cran-spatstat.sparse (3.0-3-1) ... 312s Setting up r-cran-tinytex (0.49-1) ... 312s Setting up r-cran-kernsmooth (2.23-22-1) ... 312s Setting up r-cran-knitr (1.45+dfsg-1) ... 312s Setting up r-cran-mgcv (1.9-1-1) ... 312s Setting up g++ (4:13.2.0-7ubuntu1) ... 312s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 312s Setting up r-cran-cachem (1.0.8-1) ... 312s Setting up r-cran-lmtest (0.9.40-1) ... 312s Setting up build-essential (12.10ubuntu1) ... 312s Setting up r-cran-globals (0.16.2-1) ... 312s Setting up r-cran-vctrs (0.6.5-1) ... 312s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 312s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 312s Setting up r-cran-ellipsis (0.3.2-2) ... 312s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 312s Setting up r-cran-misctools (0.6-28-1) ... 312s Setting up r-cran-stringr (1.5.1-1) ... 312s Setting up r-cran-class (7.3-22-2) ... 312s Setting up r-cran-callr (3.7.3-2) ... 312s Setting up r-cran-desc (1.4.3-1) ... 312s Setting up r-cran-munsell (0.5.0-2build1) ... 312s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 312s Setting up r-cran-sandwich (3.1-0-1) ... 312s Setting up r-cran-survival (3.5-8-1) ... 312s Setting up r-cran-xts (0.13.2-1) ... 312s Setting up r-cran-rdpack (2.6-1) ... 312s Setting up r-cran-tweenr (2.0.2-1) ... 312s Setting up r-cran-future (1.33.1+dfsg-1) ... 312s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 312s Setting up r-cran-future.apply (1.11.1+dfsg-1) ... 312s Setting up r-cran-systemfonts (1.0.5-1) ... 312s Setting up r-cran-httr (1.4.7+dfsg-1) ... 312s Setting up r-cran-gridextra (2.3-3build1) ... 312s Setting up r-cran-scales (1.3.0-1) ... 312s Setting up r-cran-memoise (2.0.1-1) ... 312s Setting up r-cran-covr (3.6.4+dfsg-1) ... 312s Setting up r-cran-promises (1.2.1+dfsg-1) ... 312s Setting up r-cran-purrr (1.0.2-1) ... 312s Setting up r-cran-e1071 (1.7-14-1) ... 312s Setting up r-cran-spatstat.data (3.0-4-1) ... 312s Setting up r-cran-maxlik (1.5-2-1) ... 312s Setting up r-cran-spacetime (1.3-1-1) ... 312s Setting up r-cran-htmltools (0.5.7-1) ... 312s Setting up r-cran-spatstat.geom (3.2-8-1) ... 312s Setting up r-cran-pkgbuild (1.4.3-1) ... 312s Setting up r-cran-sass (0.4.8+dfsg-1) ... 312s Setting up r-cran-dplyr (1.1.4-1) ... 312s Setting up r-cran-cubelyr (1.0.2-1) ... 312s Setting up r-cran-pkgload (1.3.4-1) ... 312s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 312s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 312s Setting up r-cran-rematch2 (2.1.2-2build1) ... 312s Setting up r-cran-rpart (4.1.23-1) ... 312s Setting up r-cran-fontawesome (0.5.2-1) ... 312s Setting up r-cran-spatstat.random (3.2-2-1) ... 312s Setting up r-cran-plm (2.6-3-1) ... 312s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 312s Setting up r-cran-viridis (0.6.5-1) ... 312s Setting up r-cran-classint (0.4-10+dfsg-1) ... 312s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 312s Setting up r-cran-spatstat.explore (3.2-5-1) ... 312s Setting up r-cran-ggthemes (5.1.0-1) ... 312s Setting up r-cran-waldo (0.5.2-1build1) ... 312s Setting up r-cran-tidyr (1.3.1-1) ... 312s Setting up r-cran-ggforce (0.4.1-1) ... 312s Setting up r-cran-spatstat.model (3.2-8-1) ... 312s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 312s Setting up r-cran-testthat (3.2.1-1) ... 312s Setting up r-cran-ncmeta (0.3.6-1) ... 312s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 312s Setting up r-cran-spatstat.linnet (3.1-3-1) ... 312s Setting up r-cran-spatstat (3.0-7-1) ... 312s Setting up libheif-plugin-dav1d:amd64 (1.17.6-1ubuntu1) ... 312s Setting up libheif-plugin-libde265:amd64 (1.17.6-1ubuntu1) ... 312s Setting up libheif1:amd64 (1.17.6-1ubuntu1) ... 312s Setting up libgdal34:amd64 (3.8.4+dfsg-1) ... 312s Setting up r-cran-terra (1.7-65-1) ... 312s Setting up r-cran-sf (1.0-15+dfsg-1) ... 312s Setting up r-cran-stars (0.6-4-1) ... 312s Setting up r-cran-sftime (0.2-0-6) ... 312s Setting up r-cran-areal (0.1.8+dfsg-2) ... 312s Setting up r-cran-gstat (2.1-1-2) ... 312s Setting up r-cran-raster (3.6-26-1) ... 312s Setting up r-cran-lwgeom (0.2-13-3) ... 312s Setting up r-cran-exactextractr (0.10.0-1) ... 312s Setting up r-cran-ncdfgeom (1.1.6+dfsg-1) ... 312s Processing triggers for libc-bin (2.39-0ubuntu6) ... 312s Processing triggers for man-db (2.12.0-3) ... 314s Processing triggers for install-info (7.1-3) ... 316s Reading package lists... 316s Building dependency tree... 316s Reading state information... 317s Starting pkgProblemResolver with broken count: 0 317s Starting 2 pkgProblemResolver with broken count: 0 317s Done 317s The following NEW packages will be installed: 317s autopkgtest-satdep 317s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 317s Need to get 0 B/696 B of archives. 317s After this operation, 0 B of additional disk space will be used. 317s Get:1 /tmp/autopkgtest.skOjQf/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 317s Selecting previously unselected package autopkgtest-satdep. 317s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 98587 files and directories currently installed.) 317s Preparing to unpack .../2-autopkgtest-satdep.deb ... 317s Unpacking autopkgtest-satdep (0) ... 318s Setting up autopkgtest-satdep (0) ... 319s (Reading database ... 98587 files and directories currently installed.) 319s Removing autopkgtest-satdep (0) ... 319s autopkgtest [18:47:50]: test run-unit-test: [----------------------- 319s BEGIN TEST aggregate.R 319s 319s R version 4.3.2 (2023-10-31) -- "Eye Holes" 319s Copyright (C) 2023 The R Foundation for Statistical Computing 319s Platform: x86_64-pc-linux-gnu (64-bit) 319s 319s R is free software and comes with ABSOLUTELY NO WARRANTY. 319s You are welcome to redistribute it under certain conditions. 319s Type 'license()' or 'licence()' for distribution details. 319s 319s R is a collaborative project with many contributors. 319s Type 'contributors()' for more information and 319s 'citation()' on how to cite R or R packages in publications. 319s 319s Type 'demo()' for some demos, 'help()' for on-line help, or 319s 'help.start()' for an HTML browser interface to help. 319s Type 'q()' to quit R. 319s 320s > library(stars) 320s Loading required package: abind 320s Loading required package: sf 320s Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.3.1; sf_use_s2() is TRUE 320s > 320s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 320s + data(air) # this loads several datasets in .GlobalEnv 320s + dim(air) 320s + d = st_dimensions(station = st_set_crs(st_as_sfc(stations), 4326), time = dates) 320s + 320s + blocks = st_make_grid(st_as_sfc("POLYGON ((5.871619 47.26986, 15.03811 47.26986, 15.03811 55.05653, 5.871619 55.05653, 5.871619 47.26986))", crs = 4326), 320s + n = c(3,3)) 320s + 320s + print(aq <- st_as_stars(list(PM10 = air), dimensions = d)) 320s + print(a <- aggregate(aq, blocks, mean, na.rm = TRUE)) 320s + } 321s stars object with 2 dimensions and 1 attribute 321s attribute(s): 321s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 321s PM10 0 9.921 14.792 17.69728 21.992 274.333 157659 321s dimension(s): 321s from to offset delta refsys point 321s station 1 70 NA NA WGS 84 TRUE 321s time 1 4383 1998-01-01 1 days Date FALSE 321s values 321s station POINT (9.585911 53.67057),...,POINT (9.446661 49.24068) 321s time NULL 321s stars object with 2 dimensions and 1 attribute 321s attribute(s): 321s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 321s PM10 1 11 15.57425 18.1715 22.17197 183.271 8429 321s dimension(s): 321s from to offset delta refsys point 321s geometry 1 9 NA NA WGS 84 FALSE 321s time 1 4383 1998-01-01 1 days Date FALSE 321s values 321s geometry POLYGON ((5.871619 47.269...,...,POLYGON ((11.98261 52.460... 321s time NULL 321s > 321s > # adapted from ?read_stars: 321s > m = array(1:720, dim = c(x = 10, y = 12, t = 6)) # named dim 321s > st = st_as_stars(m) 321s > attr(st, "dimensions")$y$delta = -1 321s > attr(st, "dimensions")$y$offset = 12 321s > tm = as.Date("2019-02-19") + 1:6 321s > st = st_set_crs(st_set_dimensions(st, 3, values = tm), 4326) 321s > 321s > tmp = tempfile(fileext = ".tif") 321s > write_stars(st, tmp) 321s > 321s > (red <- setNames(read_stars(tmp, RasterIO = list(nXOff = 1, nYOff = 1, nXsize = 10, nYSize = 12, 321s + nBufXSize = 2, nBufYSize = 2)), "foo")) 321s stars object with 3 dimensions and 1 attribute 321s attribute(s): 321s Min. 1st Qu. Median Mean 3rd Qu. Max. 321s foo 33 199.25 365.5 365.5 531.75 698 321s dimension(s): 321s from to offset delta refsys point x/y 321s x 1 2 0 5 WGS 84 FALSE [x] 321s y 1 2 12 -6 WGS 84 FALSE [y] 321s band 1 6 NA NA NA NA 321s > 321s > sfc = st_set_crs(st_as_sfc(red, as_points = FALSE), st_crs(st)) 321s > (a = aggregate(st, st_sf(a = 1, geom = sfc), mean)) 321s stars object with 2 dimensions and 1 attribute 321s attribute(s): 321s Min. 1st Qu. Median Mean 3rd Qu. Max. 321s A1 28 194.25 360.5 360.5 526.75 693 321s dimension(s): 321s from to offset delta refsys point 321s geom 1 4 NA NA WGS 84 FALSE 321s t 1 6 2019-02-20 1 days Date FALSE 321s values 321s geom POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 321s t NULL 321s > (a = aggregate(st, sfc, mean)) 321s stars object with 2 dimensions and 1 attribute 321s attribute(s): 321s Min. 1st Qu. Median Mean 3rd Qu. Max. 321s A1 28 194.25 360.5 360.5 526.75 693 321s dimension(s): 321s from to offset delta refsys point 321s geometry 1 4 NA NA WGS 84 FALSE 321s t 1 6 2019-02-20 1 days Date FALSE 321s values 321s geometry POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 321s t NULL 321s > 321s > tm0 = as.Date("2019-02-19") + -1:8 321s > (a = aggregate(st, tm0, mean, na.rm = TRUE)) 321s stars object with 3 dimensions and 1 attribute 321s attribute(s): 321s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 321s A1 1 180.75 360.5 360.5 540.25 720 480 321s dimension(s): 321s from to offset delta refsys point x/y 321s time 1 10 2019-02-18 1 days Date NA 321s x 1 10 0 1 WGS 84 FALSE [x] 321s y 1 12 12 -1 WGS 84 FALSE [y] 321s > (a = aggregate(st, "days", mean, na.rm = TRUE)) 321s stars object with 3 dimensions and 1 attribute 321s attribute(s): 321s Min. 1st Qu. Median Mean 3rd Qu. Max. 321s A1 1 180.75 360.5 360.5 540.25 720 321s dimension(s): 321s from to offset delta refsys point x/y 321s time 1 6 2019-02-20 1 days Date NA 321s x 1 10 0 1 WGS 84 FALSE [x] 321s y 1 12 12 -1 WGS 84 FALSE [y] 321s > yd = function(x) as.POSIXlt(x)$yday 321s > (a = aggregate(st, yd, mean, na.rm = TRUE)) 321s stars object with 3 dimensions and 1 attribute 321s attribute(s): 321s Min. 1st Qu. Median Mean 3rd Qu. Max. 321s A1 1 180.75 360.5 360.5 540.25 720 321s dimension(s): 321s from to offset delta refsys point values x/y 321s geometry 1 6 NA NA NA NA 50,...,55 321s x 1 10 0 1 WGS 84 FALSE NULL [x] 321s y 1 12 12 -1 WGS 84 FALSE NULL [y] 321s > 321s > # with "by" geometry not overlapping x 321s > pt = st_point(c(-10,-10)) 321s > (sfc = c(sfc, st_sfc(pt, crs = st_crs(sfc)))) 321s Geometry set for 5 features 321s Geometry type: GEOMETRY 321s Dimension: XY 321s Bounding box: xmin: -10 ymin: -10 xmax: 10 ymax: 12 321s Geodetic CRS: WGS 84 321s POLYGON ((0 12, 5 12, 5 6, 0 6, 0 12)) 321s POLYGON ((5 12, 10 12, 10 6, 5 6, 5 12)) 321s POLYGON ((0 6, 5 6, 5 0, 0 0, 0 6)) 321s POLYGON ((5 6, 10 6, 10 0, 5 0, 5 6)) 321s POINT (-10 -10) 321s > (a = aggregate(st, sfc, mean)) 322s stars object with 2 dimensions and 1 attribute 322s attribute(s): 322s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 322s A1 28 194.25 360.5 360.5 526.75 693 6 322s dimension(s): 322s from to offset delta refsys point 322s geometry 1 5 NA NA WGS 84 FALSE 322s t 1 6 2019-02-20 1 days Date FALSE 322s values 322s geometry POLYGON ((0 12, 5 12, 5 6...,...,POINT (-10 -10) 322s t NULL 322s > (a = aggregate(st, st, mean)) 322s stars object with 2 dimensions and 1 attribute 322s attribute(s): 322s Min. 1st Qu. Median Mean 3rd Qu. Max. 322s A1 1 180.75 360.5 360.5 540.25 720 322s dimension(s): 322s from to offset delta refsys point 322s geometry 1 120 NA NA WGS 84 FALSE 322s t 1 6 2019-02-20 1 days Date FALSE 322s values 322s geometry POLYGON ((0 12, 1 12, 1 1...,...,POLYGON ((9 1, 10 1, 10 0... 322s t NULL 322s > 322s BEGIN TEST align.R 322s 322s R version 4.3.2 (2023-10-31) -- "Eye Holes" 322s Copyright (C) 2023 The R Foundation for Statistical Computing 322s Platform: x86_64-pc-linux-gnu (64-bit) 322s 322s R is free software and comes with ABSOLUTELY NO WARRANTY. 322s You are welcome to redistribute it under certain conditions. 322s Type 'license()' or 'licence()' for distribution details. 322s 322s R is a collaborative project with many contributors. 322s Type 'contributors()' for more information and 322s 'citation()' on how to cite R or R packages in publications. 322s 322s Type 'demo()' for some demos, 'help()' for on-line help, or 322s 'help.start()' for an HTML browser interface to help. 322s Type 'q()' to quit R. 322s 322s > suppressPackageStartupMessages(library(stars)) 322s > set.seed(1331) 322s > st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1) 323s Geometry set for 1 feature 323s Geometry type: POINT 323s Dimension: XY 323s Bounding box: xmin: 291430.8 ymin: 9111430 xmax: 291430.8 ymax: 9111430 323s Projected CRS: SIRGAS 2000 / UTM zone 25S 323s > b = st_buffer(st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1), 335) 323s POINT (291430.8 9111430) 323s > bba = stars:::st_align(st_bbox(b), st_dimensions(L7_ETMs)) 323s > 323s > plot(L7_ETMs[,,,1], extent = st_buffer(b, 20), reset = FALSE, key.pos = NULL) 323s > plot(b, add = TRUE, col = NA, border = 'red') 323s > plot(st_as_sfc(st_bbox(b)), col = NA, border = 'red', add = TRUE) 323s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 323s > st_bbox(b) 323s xmin ymin xmax ymax 323s 297116.8 9119404.1 297786.8 9120074.1 323s > bba 323s xmin ymin xmax ymax 323s 297098.3 9119392.8 297810.8 9120076.8 323s > 323s > plot(L7_ETMs[,,,1], reset = FALSE, key.pos = NULL) 323s > plot(b, col = 'red', add = TRUE) 323s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 323s > 323s > b0 = st_buffer(b, -100) 323s > L7 = st_as_stars(L7_ETMs)[b0][,,,1] |> st_normalize() 323s > bbb = stars:::st_align(st_bbox(b), st_dimensions(L7)) 323s > plot(L7, extent = st_buffer(b, 120), reset = FALSE, key.pos = NULL) 323s > plot(st_as_sfc(st_bbox(L7)), col = NA, border = 'black', add = TRUE) 323s > plot(st_as_sfc(bbb), col = NA, border = 'blue', add = TRUE) 323s > plot(b, col = NA, border = 'red', add = TRUE) 323s > 323s > all.equal(bbb, bba) 323s [1] TRUE 323s > 323s BEGIN TEST area.R 323s 323s R version 4.3.2 (2023-10-31) -- "Eye Holes" 323s Copyright (C) 2023 The R Foundation for Statistical Computing 323s Platform: x86_64-pc-linux-gnu (64-bit) 323s 323s R is free software and comes with ABSOLUTELY NO WARRANTY. 323s You are welcome to redistribute it under certain conditions. 323s Type 'license()' or 'licence()' for distribution details. 323s 323s R is a collaborative project with many contributors. 323s Type 'contributors()' for more information and 323s 'citation()' on how to cite R or R packages in publications. 323s 323s Type 'demo()' for some demos, 'help()' for on-line help, or 323s 'help.start()' for an HTML browser interface to help. 323s Type 'q()' to quit R. 323s 323s > suppressPackageStartupMessages(library(stars)) 324s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 324s > x = read_stars(tif) 324s > (a = st_area(x[,1:5,1:5])) 324s stars object with 2 dimensions and 1 attribute 324s attribute(s): 324s Min. 1st Qu. Median Mean 3rd Qu. Max. 324s area [m^2] 812.25 812.25 812.25 812.25 812.25 812.25 324s dimension(s): 324s from to offset delta refsys point x/y 324s x 1 5 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 324s y 1 5 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 324s > 324s > m = matrix(1:20, nrow = 5, ncol = 4) 324s > x = c(0, 0.5, 1, 2, 4, 5) # 6 numbers: boundaries! 324s > y = c(0.3, 0.5, 1, 2, 2.2) # 5 numbers: boundaries! 324s > (r = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 324s stars object with 2 dimensions and 1 attribute 324s attribute(s): 324s Min. 1st Qu. Median Mean 3rd Qu. Max. 324s m 1 5.75 10.5 10.5 15.25 20 324s dimension(s): 324s from to point values x/y 324s x 1 5 FALSE [0,0.5),...,[4,5) [x] 324s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 324s > # image(r, axes = TRUE, col = grey((1:20)/20)) 324s > (a = st_area(r)) 324s Missing coordinate reference system: assuming Cartesian coordinates 324s stars object with 2 dimensions and 1 attribute 324s attribute(s): 324s Min. 1st Qu. Median Mean 3rd Qu. Max. 324s area 0.1 0.2 0.325 0.475 0.5 2 324s dimension(s): 324s from to point values x/y 324s x 1 5 FALSE [0,0.5),...,[4,5) [x] 324s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 324s > #plot(a, axes = TRUE) 324s > 324s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 324s > if (s5p != "") { 324s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 324s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 324s + if (inherits(nit.c[[1]], "units")) 324s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 324s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 324s + st_crs(nit.c) = 4326 324s + print((a <- st_area(nit.c[,1:5,1:5]))) 324s + # plot(a, axes = TRUE, border = NA) 324s + } 324s > 324s BEGIN TEST crop.R 324s 324s R version 4.3.2 (2023-10-31) -- "Eye Holes" 324s Copyright (C) 2023 The R Foundation for Statistical Computing 324s Platform: x86_64-pc-linux-gnu (64-bit) 324s 324s R is free software and comes with ABSOLUTELY NO WARRANTY. 324s You are welcome to redistribute it under certain conditions. 324s Type 'license()' or 'licence()' for distribution details. 324s 324s R is a collaborative project with many contributors. 324s Type 'contributors()' for more information and 324s 'citation()' on how to cite R or R packages in publications. 324s 324s Type 'demo()' for some demos, 'help()' for on-line help, or 324s 'help.start()' for an HTML browser interface to help. 324s Type 'q()' to quit R. 324s 324s > suppressPackageStartupMessages(library(stars)) 325s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 325s > x = read_stars(tif) 325s > xy = structure(list(x = c(293253.999046018, 296400.196497684), y = c(9113801.64775462, 325s + 9111328.49619133)), .Names = c("x", "y")) 325s > pts = st_as_sf(data.frame(do.call(cbind, xy)), coords = c("x", "y"), crs = st_crs(x)) 325s > image(x, axes = TRUE) 325s > plot(st_as_sfc(st_bbox(pts)), col = NA, add = TRUE) 325s > 325s > bb = st_bbox(pts) 325s > (xx = x[bb]) 325s stars object with 3 dimensions and 1 attribute 325s attribute(s): 325s Min. 1st Qu. Median Mean 3rd Qu. Max. 325s L7_ETMs.tif 3 56 73 70.87303 89 255 325s dimension(s): 325s from to offset delta refsys point x/y 325s x 158 268 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 325s y 245 331 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 325s band 1 6 NA NA NA NA 325s > image(xx) 325s > plot(st_as_sfc(bb), add = TRUE, col = NA) 325s > st_contains(st_as_sfc(st_bbox(xx)), st_as_sfc(st_bbox(pts))) 325s Sparse geometry binary predicate list of length 1, where the predicate 325s was `contains' 325s 1: 1 325s > 325s > image(x) 325s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 325s > buf = st_buffer(st_sfc(pt, crs = st_crs(x)), 1500) 325s > plot(buf, add = TRUE) 325s > 325s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 325s + crs = st_crs(x)) 325s > image(x[buf]) 325s > plot(buf, add = TRUE, col = NA) 325s > image(x[buf,crop=FALSE]) 326s > plot(buf, add = TRUE, col = NA) 326s > 326s > plot(x, rgb = 1:3) 326s > 326s > # #638: 326s > l = st_as_stars(L7_ETMs) 326s > st_bbox(l) |> st_as_sfc() -> bb 326s > (bb + 1e6) |> st_set_crs(st_crs(l)) -> b 326s > st_crop(l, b) 326s stars object with 3 dimensions and 1 attribute 326s attribute(s): 326s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 326s L7_ETMs NA NA NA NaN NA NA 737088 326s dimension(s): 326s Warning message: 326s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 326s from to offset delta refsys point x/y 326s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 326s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 326s band 1 6 NA NA NA NA 326s > st_intersects(b, st_as_sfc(st_bbox(l))) |> as.matrix() 326s [,1] 326s [1,] FALSE 326s > (bb - 1e6) |> st_set_crs(st_crs(l)) -> b 326s > st_crop(l, b) 327s stars object with 3 dimensions and 1 attribute 327s attribute(s): 327s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 327s L7_ETMs NA NA NA NaN NA NA 737088 327s dimension(s): 327s from to offset delta refsys point x/y 327s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 327s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 327s band 1 6 NA NA NA NA 327s > 327s Warning message: 327s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 327s BEGIN TEST curvilinear.R 327s 327s R version 4.3.2 (2023-10-31) -- "Eye Holes" 327s Copyright (C) 2023 The R Foundation for Statistical Computing 327s Platform: x86_64-pc-linux-gnu (64-bit) 327s 327s R is free software and comes with ABSOLUTELY NO WARRANTY. 327s You are welcome to redistribute it under certain conditions. 327s Type 'license()' or 'licence()' for distribution details. 327s 327s R is a collaborative project with many contributors. 327s Type 'contributors()' for more information and 327s 'citation()' on how to cite R or R packages in publications. 327s 327s Type 'demo()' for some demos, 'help()' for on-line help, or 327s 'help.start()' for an HTML browser interface to help. 327s Type 'q()' to quit R. 327s 327s > suppressPackageStartupMessages(library(stars)) 328s > 328s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 328s > if (s5p != "") { 328s + 328s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 328s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 328s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 328s + lat = read_stars(lat_ds) 328s + lon = read_stars(lon_ds) 328s + nit = read_stars(nit_ds) 328s + nit[[1]][nit[[1]] > 9e+36] = NA 328s + 328s + ll = setNames(c(lon, lat), c("x", "y")) 328s + nit.c0 = st_as_stars(nit, curvilinear = ll) 328s + 328s + # more direct method: 328s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 328s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 328s + if (inherits(nit.c[[1]], "units")) 328s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 328s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 328s + all.equal(nit.c0, nit.c) 328s + st_crs(nit.c) = 4326 328s + print(nit.c) 328s + 328s + if (FALSE && capabilities()["png"]) { 328s + png("nit1.png", 800, 800) 328s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 328s + maps::map('world', add = TRUE, col = 'red') 328s + dev.off() 328s + 328s + png("nit2.png", 800, 800) 328s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 328s + maps::map('world', add = TRUE, col = 'red') 328s + dev.off() 328s + 328s + nit.c = stars:::st_downsample(nit.c, 8) 328s + print(nit.c) 328s + 328s + png("nit3.png", 800, 800) 328s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 328s + maps::map('world', add = TRUE, col = 'red') 328s + dev.off() 328s + 328s + png("nit4.png", 800, 800) 328s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 328s + maps::map('world', add = TRUE, col = 'red') 328s + dev.off() 328s + } 328s + 328s + } 328s > 328s BEGIN TEST datasets.R 328s 328s R version 4.3.2 (2023-10-31) -- "Eye Holes" 328s Copyright (C) 2023 The R Foundation for Statistical Computing 328s Platform: x86_64-pc-linux-gnu (64-bit) 328s 328s R is free software and comes with ABSOLUTELY NO WARRANTY. 328s You are welcome to redistribute it under certain conditions. 328s Type 'license()' or 'licence()' for distribution details. 328s 328s R is a collaborative project with many contributors. 328s Type 'contributors()' for more information and 328s 'citation()' on how to cite R or R packages in publications. 328s 328s Type 'demo()' for some demos, 'help()' for on-line help, or 328s 'help.start()' for an HTML browser interface to help. 328s Type 'q()' to quit R. 328s 328s > suppressPackageStartupMessages(library(stars)) 329s > bcsd_obs 329s stars_proxy object with 2 attributes in 2 file(s): 329s $foo 329s [1] "[...]/bcsd_obs_1999.nc:pr" 329s 329s $bar 329s [1] "[...]/bcsd_obs_1999.nc:tas" 329s 329s dimension(s): 329s from to offset delta refsys values x/y 329s x 1 81 -85 0.125 NA NULL [x] 329s y 1 33 37.12 -0.125 NA NULL [y] 329s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 329s > L7_ETMs 329s stars_proxy object with 1 attribute in 1 file(s): 329s $L7_ETMs 329s [1] "[...]/L7_ETMs.tif" 329s 329s dimension(s): 329s from to offset delta refsys point x/y 329s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 329s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 329s band 1 6 NA NA NA NA 329s > if (require(starsdata, quietly = TRUE)) { 329s + print(stars_sentinel2) 329s + } 329s > 329s BEGIN TEST dimensions.R 329s 329s R version 4.3.2 (2023-10-31) -- "Eye Holes" 329s Copyright (C) 2023 The R Foundation for Statistical Computing 329s Platform: x86_64-pc-linux-gnu (64-bit) 329s 329s R is free software and comes with ABSOLUTELY NO WARRANTY. 329s You are welcome to redistribute it under certain conditions. 329s Type 'license()' or 'licence()' for distribution details. 329s 329s R is a collaborative project with many contributors. 329s Type 'contributors()' for more information and 329s 'citation()' on how to cite R or R packages in publications. 329s 329s Type 'demo()' for some demos, 'help()' for on-line help, or 329s 'help.start()' for an HTML browser interface to help. 329s Type 'q()' to quit R. 329s 329s > # https://github.com/r-spatial/stars/issues/295 329s > suppressPackageStartupMessages(library(stars)) 330s > raw <- read_stars(system.file("nc/bcsd_obs_1999.nc", package = "stars")) 330s pr, tas, 330s > foo <- function(x, idx) stats::lowess(idx, x)$y 330s > 330s > timeline <- st_get_dimension_values(raw, "time") 330s > smooth = st_apply(raw, 330s + MARGIN = c("x", "y"), 330s + FUN = foo, 330s + idx = st_get_dimension_values(raw, "time") 330s + ) 330s > 330s > st_set_dimensions(smooth, 330s + which = "foo", 330s + values = st_get_dimension_values(raw, "time"), 330s + names = "time" 330s + ) 330s stars object with 3 dimensions and 2 attributes 330s attribute(s): 330s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 330s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 330s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 330s dimension(s): 330s from to offset delta refsys values x/y 330s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 330s x 1 81 -85 0.125 NA NULL [x] 330s y 1 33 37.12 -0.125 NA NULL [y] 330s > 330s > raw %>% 330s + st_apply(MARGIN = c("x", "y"), FUN = foo, idx = timeline) %>% 330s + st_set_dimensions("foo", st_dimensions(raw)["time"]) 331s stars object with 3 dimensions and 2 attributes 331s attribute(s): 331s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 331s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 331s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 331s dimension(s): 331s from to offset delta refsys values x/y 331s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 331s x 1 81 -85 0.125 NA NULL [x] 331s y 1 33 37.12 -0.125 NA NULL [y] 331s > 331s BEGIN TEST downsample.R 331s 331s R version 4.3.2 (2023-10-31) -- "Eye Holes" 331s Copyright (C) 2023 The R Foundation for Statistical Computing 331s Platform: x86_64-pc-linux-gnu (64-bit) 331s 331s R is free software and comes with ABSOLUTELY NO WARRANTY. 331s You are welcome to redistribute it under certain conditions. 331s Type 'license()' or 'licence()' for distribution details. 331s 331s R is a collaborative project with many contributors. 331s Type 'contributors()' for more information and 331s 'citation()' on how to cite R or R packages in publications. 331s 331s Type 'demo()' for some demos, 'help()' for on-line help, or 331s 'help.start()' for an HTML browser interface to help. 331s Type 'q()' to quit R. 331s 331s > library(stars) 331s Loading required package: abind 331s Loading required package: sf 331s Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.3.1; sf_use_s2() is TRUE 331s > m = matrix(1:121, 11, 11) 331s > m 331s [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] 331s [1,] 1 12 23 34 45 56 67 78 89 100 111 331s [2,] 2 13 24 35 46 57 68 79 90 101 112 331s [3,] 3 14 25 36 47 58 69 80 91 102 113 331s [4,] 4 15 26 37 48 59 70 81 92 103 114 331s [5,] 5 16 27 38 49 60 71 82 93 104 115 331s [6,] 6 17 28 39 50 61 72 83 94 105 116 331s [7,] 7 18 29 40 51 62 73 84 95 106 117 331s [8,] 8 19 30 41 52 63 74 85 96 107 118 331s [9,] 9 20 31 42 53 64 75 86 97 108 119 331s [10,] 10 21 32 43 54 65 76 87 98 109 120 331s [11,] 11 22 33 44 55 66 77 88 99 110 121 331s > s = st_as_stars(m) 331s > st_downsample(s, 1) 331s stars object with 2 dimensions and 1 attribute 331s attribute(s): 331s Min. 1st Qu. Median Mean 3rd Qu. Max. 331s A1 1 28.5 61 61 93.5 121 331s dimension(s): 331s from to offset delta point x/y 331s X1 1 6 0 2 FALSE [x] 331s X2 1 6 0 2 FALSE [y] 331s > st_downsample(s, 1)[[1]] 331s [,1] [,2] [,3] [,4] [,5] [,6] 331s [1,] 1 23 45 67 89 111 331s [2,] 3 25 47 69 91 113 331s [3,] 5 27 49 71 93 115 331s [4,] 7 29 51 73 95 117 331s [5,] 9 31 53 75 97 119 331s [6,] 11 33 55 77 99 121 331s > st_downsample(s, 1, offset = 1) 331s stars object with 2 dimensions and 1 attribute 331s attribute(s): 331s Min. 1st Qu. Median Mean 3rd Qu. Max. 331s A1 13 37 61 61 85 109 331s dimension(s): 331s from to offset delta point x/y 331s X1 1 5 1 2 FALSE [x] 331s X2 1 5 1 2 FALSE [y] 331s > st_downsample(s, 1, offset = 1)[[1]] 331s [,1] [,2] [,3] [,4] [,5] 331s [1,] 13 35 57 79 101 331s [2,] 15 37 59 81 103 331s [3,] 17 39 61 83 105 331s [4,] 19 41 63 85 107 331s [5,] 21 43 65 87 109 331s > st_downsample(s, 1, FUN = mean) 331s stars object with 2 dimensions and 1 attribute 331s attribute(s): 331s Min. 1st Qu. Median Mean 3rd Qu. Max. 331s A1 7 31 55 55 79 103 331s dimension(s): 331s from to offset delta point x/y 331s X1 1 5 0 2 FALSE [x] 331s X2 1 5 0 2 FALSE [y] 331s > st_downsample(s, 1, FUN = mean)[[1]] 331s [,1] [,2] [,3] [,4] [,5] 331s [1,] 7 29 51 73 95 331s [2,] 9 31 53 75 97 331s [3,] 11 33 55 77 99 331s [4,] 13 35 57 79 101 331s [5,] 15 37 59 81 103 331s > st_downsample(s, 1, offset = 1, FUN = mean) 331s stars object with 2 dimensions and 1 attribute 331s attribute(s): 332s Min. 1st Qu. Median Mean 3rd Qu. Max. 332s A1 19 43 67 67 91 115 332s dimension(s): 332s from to offset delta point x/y 332s X1 1 5 1 2 FALSE [x] 332s X2 1 5 1 2 FALSE [y] 332s > st_downsample(s, 1, offset = c(0,1), FUN = mean)[[1]] 332s [,1] [,2] [,3] [,4] [,5] 332s [1,] 18 40 62 84 106 332s [2,] 20 42 64 86 108 332s [3,] 22 44 66 88 110 332s [4,] 24 46 68 90 112 332s [5,] 26 48 70 92 114 332s > st_downsample(s, 1, offset = c(0,1)) 332s stars object with 2 dimensions and 1 attribute 332s attribute(s): 332s Min. 1st Qu. Median Mean 3rd Qu. Max. 332s A1 12 36.5 61 61 85.5 110 332s dimension(s): 332s from to offset delta point x/y 332s X1 1 6 0 2 FALSE [x] 332s X2 1 5 1 2 FALSE [y] 332s > st_downsample(s, 1, offset = c(0,1))[[1]] 332s [,1] [,2] [,3] [,4] [,5] 332s [1,] 12 34 56 78 100 332s [2,] 14 36 58 80 102 332s [3,] 16 38 60 82 104 332s [4,] 18 40 62 84 106 332s [5,] 20 42 64 86 108 332s [6,] 22 44 66 88 110 332s > 332s BEGIN TEST ee.R 332s 332s R version 4.3.2 (2023-10-31) -- "Eye Holes" 332s Copyright (C) 2023 The R Foundation for Statistical Computing 332s Platform: x86_64-pc-linux-gnu (64-bit) 332s 332s R is free software and comes with ABSOLUTELY NO WARRANTY. 332s You are welcome to redistribute it under certain conditions. 332s Type 'license()' or 'licence()' for distribution details. 332s 332s R is a collaborative project with many contributors. 332s Type 'contributors()' for more information and 332s 'citation()' on how to cite R or R packages in publications. 332s 332s Type 'demo()' for some demos, 'help()' for on-line help, or 332s 'help.start()' for an HTML browser interface to help. 332s Type 'q()' to quit R. 332s 332s > # show that extract with exact=TRUE equals st_interpolate_aw(), only much faster 332s > options(digits=15) 332s > suppressPackageStartupMessages(library(stars)) 332s > L = st_as_stars(L7_ETMs)[,,,1] 332s > set.seed(123432) 332s > st_bbox(L) |> 332s + st_as_sfc() |> 332s + st_centroid() |> 332s + st_buffer(50) |> 332s + st_sample(10) |> 332s + st_combine() |> 332s + st_convex_hull() -> ch 333s > if (interactive()) { 333s + plot(L, reset = FALSE) 333s + plot(ch, add = TRUE, border = 'red', col = NA) 333s + } 333s > if (FALSE) { 333s + e = st_extract(L, ch)[[1]] 333s + a = aggregate(L, ch, mean)[[1]] 333s + identical(e, a) # same code path 333s + ee = aggregate(L, ch, mean, exact = TRUE)[[1]] 333s + all.equal(e, ee) 333s + aw = suppressWarnings(st_interpolate_aw(L, ch, extensive = FALSE)$V1) 333s + all.equal(as.vector(ee), aw) 333s + ee0 = st_extract(L, ch, exact = TRUE)[[1]] 333s + all.equal(ee0, ee) # ?? 333s + } 333s > 333s BEGIN TEST extract.R 333s 333s R version 4.3.2 (2023-10-31) -- "Eye Holes" 333s Copyright (C) 2023 The R Foundation for Statistical Computing 333s Platform: x86_64-pc-linux-gnu (64-bit) 333s 333s R is free software and comes with ABSOLUTELY NO WARRANTY. 333s You are welcome to redistribute it under certain conditions. 333s Type 'license()' or 'licence()' for distribution details. 333s 333s R is a collaborative project with many contributors. 333s Type 'contributors()' for more information and 333s 'citation()' on how to cite R or R packages in publications. 333s 333s Type 'demo()' for some demos, 'help()' for on-line help, or 333s 'help.start()' for an HTML browser interface to help. 333s Type 'q()' to quit R. 333s 333s > # Create 'stars' object 333s > set.seed(1331) 333s > suppressPackageStartupMessages(library(stars)) 333s > volcano = rbind(volcano, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA) # add NA rows 333s > d = st_dimensions(x = 1:ncol(volcano), y = 1:nrow(volcano)) 333s > (r = st_as_stars(t(volcano))) 333s stars object with 2 dimensions and 1 attribute 333s attribute(s): 333s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 333s A1 94 108 124 130.1879 150 195 732 333s dimension(s): 333s from to offset delta point x/y 333s X1 1 61 0 1 FALSE [x] 333s X2 1 99 0 1 FALSE [y] 333s > r = st_set_dimensions(r, 1, offset = 0, delta = 1) 333s > r = st_set_dimensions(r, 2, offset = nrow(volcano), delta = -1) 333s > 333s > # Create points 333s > pnt = st_sample(st_as_sfc(st_bbox(r)), 100) 334s > pnt = st_as_sf(pnt) 334s > 334s > # Extract - 'st_join' 334s > x = st_join(pnt, st_as_sf(r)) 334s > 334s > # Extract - 'st_extract' 334s > y = st_extract(r, pnt) 334s > 334s > # check there are NA's: 334s > any(is.na(x)) 334s [1] TRUE 334s > # Compare 334s > all.equal(x$A1, y[[1]]) 334s [1] TRUE 334s > 334s > ################################################ 334s > if (FALSE) { 334s + 334s + ## tic: segfaults 334s + # check equal results with stars_proxy: 334s + #x = st_extract(stars:::st_as_stars_proxy(r), pnt) 334s + #all.equal(x$A1, y[[1]]) 334s + #all.equal(x, y) 334s + 334s + r = c(r, 2*r, 10*r) 334s + x = st_join(pnt, st_as_sf(r)) 334s + y = st_as_sf(st_extract(r, pnt)) 334s + all.equal(x, y) 334s + 334s + ## tic: segfaults 334s + #x = st_extract(stars:::st_as_stars_proxy(merge(r)), pnt) 334s + #all.equal(st_as_sf(x), y) 334s + 334s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 334s + xp = read_stars(tif, proxy = TRUE) 334s + xm = read_stars(tif, proxy = FALSE) 334s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 334s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 334s + em = st_extract(xm, pts) 334s + if (utils::packageVersion("sf") >= "0.9-7") { 334s + ep = st_extract(xp, pts) 334s + print(all.equal(ep, em, check.attributes = TRUE)) 334s + } 334s + 334s + # two-attribute objects: 334s + library(stars) 334s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 334s + xp = read_stars(c(tif, tif), proxy = TRUE) 334s + xm = read_stars(c(tif, tif), proxy = FALSE) 334s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 334s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 334s + em = st_extract(xm, pts) 334s + if (utils::packageVersion("sf") >= "0.9-7") { 334s + ep = st_extract(xp, pts) 334s + print(all.equal(ep, em, check.attributes = TRUE)) 334s + } 334s + 334s + # single-attribute, single raster objects: 334s + tif1 = paste0(tempfile(), ".tif") 334s + write_stars(xm[1,,,1], "x.tif") 334s + xp = read_stars("x.tif", proxy = TRUE) 334s + xm = read_stars("x.tif", proxy = FALSE) 334s + em = st_extract(xm, pts) 334s + if (utils::packageVersion("sf") >= "0.9-7") { 334s + ep = st_extract(xp, pts) 334s + print(all.equal(ep, em, check.attributes = TRUE)) 334s + } 334s + 334s + # multiple-file attributes: 334s + x = c( 334s + "avhrr-only-v2.19810901.nc", 334s + "avhrr-only-v2.19810902.nc", 334s + "avhrr-only-v2.19810903.nc", 334s + "avhrr-only-v2.19810904.nc", 334s + "avhrr-only-v2.19810905.nc", 334s + "avhrr-only-v2.19810906.nc", 334s + "avhrr-only-v2.19810907.nc", 334s + "avhrr-only-v2.19810908.nc", 334s + "avhrr-only-v2.19810909.nc" 334s + ) 334s + file_list = system.file(paste0("netcdf/", x), package = "starsdata") 334s + if (!identical(file_list, "")) { 334s + y = read_stars(file_list, quiet = TRUE) 334s + print(y) 334s + st_crs(y) = "OGC:CRS84" 334s + pts = st_sample(st_as_sfc(st_bbox(y)), 10) 334s + em = st_extract(y, pts) 334s + 334s + (y = read_stars(file_list, quiet = TRUE, proxy = TRUE)) 334s + print(y) 334s + st_crs(y) = "OGC:CRS84" 334s + if (utils::packageVersion("sf") >= "0.9-7") { 334s + ep = st_extract(y, pts) 334s + print(all.equal(em, ep)) 334s + } 334s + } 334s + 334s + # nearest & bilinear comparison: 334s + if (utils::packageVersion("sf") >= "0.9-7") { 334s + set.seed(12331) 334s + s = st_as_stars(matrix(rnorm(16), 4)) 334s + pts = st_sample(st_as_sfc(st_bbox(s)), 10000, type = "regular") 334s + s1 = st_extract(s, pts, bilinear = FALSE) 334s + s2 = st_extract(s, pts, bilinear = TRUE) 334s + s1$s2 = s2[[1]] 334s + names(s1)[c(1,3)] = c("nearest", "bilinear") 334s + print(s1[sample(10000, 5),]) 334s + } 334s + } 334s > 334s BEGIN TEST gridtypes.R 334s 334s R version 4.3.2 (2023-10-31) -- "Eye Holes" 334s Copyright (C) 2023 The R Foundation for Statistical Computing 334s Platform: x86_64-pc-linux-gnu (64-bit) 334s 334s R is free software and comes with ABSOLUTELY NO WARRANTY. 334s You are welcome to redistribute it under certain conditions. 334s Type 'license()' or 'licence()' for distribution details. 334s 334s R is a collaborative project with many contributors. 334s Type 'contributors()' for more information and 334s 'citation()' on how to cite R or R packages in publications. 334s 334s Type 'demo()' for some demos, 'help()' for on-line help, or 334s 'help.start()' for an HTML browser interface to help. 334s Type 'q()' to quit R. 334s 334s > suppressPackageStartupMessages(library(stars)) 335s > 335s > # regular, but not spatial: 335s > d = st_dimensions(a = 1:3, b = 1:3, band = c("foo", "bar")) 335s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 335s stars object with 3 dimensions and 1 attribute 335s attribute(s): 335s Min. 1st Qu. Median Mean 3rd Qu. Max. 335s X 1 5.25 9.5 9.5 13.75 18 335s dimension(s): 335s from to offset delta point values 335s a 1 3 1 1 FALSE NULL 335s b 1 3 1 1 FALSE NULL 335s band 1 2 NA NA FALSE foo, bar 335s > as.data.frame(st, add_max=FALSE)[1:4,] 335s a b band X 335s 1 1 1 foo 1 335s 2 2 1 foo 2 335s 3 3 1 foo 3 335s 4 1 2 foo 4 335s > try(x <- st_bbox(st)) # error 335s > 335s Error in st_bbox.dimensions(st_dimensions(obj), ...) : 335s dimensions table does not have x & y, nor an sfc dimension 335s > # regular, geotransform: 335s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 335s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 335s stars object with 3 dimensions and 1 attribute 335s attribute(s): 335s Min. 1st Qu. Median Mean 3rd Qu. Max. 335s X 1 5.25 9.5 9.5 13.75 18 335s dimension(s): 335s from to offset delta point values x/y 335s x 1 3 1 1 FALSE NULL [x] 335s y 1 3 1 1 FALSE NULL [y] 335s band 1 2 NA NA FALSE foo, bar 335s > as.data.frame(st, add_max=FALSE)[1:4,] 335s x y band X 335s 1 1.5 1.5 foo 1 335s 2 2.5 1.5 foo 2 335s 3 3.5 1.5 foo 3 335s 4 1.5 2.5 foo 4 335s > as.data.frame(st, add_max=TRUE)[1:4,] 335s x y band x_max y_max X 335s 1 1 1 foo 2 2 1 335s 2 2 1 foo 3 2 2 335s 3 3 1 foo 4 2 3 335s 4 1 2 foo 2 3 4 335s > st_bbox(st) 335s xmin ymin xmax ymax 335s 1 1 4 4 335s > 335s > # rectilinear with offset given: 335s > xd = c(1, 2, 4) 335s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 335s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 335s stars object with 3 dimensions and 1 attribute 335s attribute(s): 335s Min. 1st Qu. Median Mean 3rd Qu. Max. 335s X 1 5.25 9.5 9.5 13.75 18 335s dimension(s): 335s from to offset delta point values x/y 335s x 1 3 NA NA FALSE [1,2), [2,4), [4,6) [x] 335s y 1 3 1 1 FALSE NULL [y] 335s band 1 2 NA NA FALSE foo, bar 335s > as.data.frame(st, add_max=FALSE)[1:4,] 335s x y band X 335s 1 1.5 1.5 foo 1 335s 2 3.0 1.5 foo 2 335s 3 5.0 1.5 foo 3 335s 4 1.5 2.5 foo 4 335s > as.data.frame(st, add_max=TRUE)[1:4,] 335s x y band x_max y_max X 335s 1 1 1 foo 2 2 1 335s 2 2 1 foo 4 2 2 335s 3 4 1 foo 6 2 3 335s 4 1 2 foo 2 3 4 335s > st_bbox(st) 335s xmin ymin xmax ymax 335s 1 1 6 4 335s > 335s > # rectilinear with midpoints given: 335s > xd = c(1, 2, 4) 335s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE) 335s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 335s stars object with 3 dimensions and 1 attribute 335s attribute(s): 335s Min. 1st Qu. Median Mean 3rd Qu. Max. 335s X 1 5.25 9.5 9.5 13.75 18 335s dimension(s): 335s from to offset delta point values x/y 335s x 1 3 NA NA FALSE [0.5,1.5), [1.5,3.0), [3.0,5.0) [x] 335s y 1 3 0.5 1 FALSE NULL [y] 335s band 1 2 NA NA FALSE foo, bar 335s > as.data.frame(st, add_max=FALSE)[1:4,] 335s x y band X 335s 1 1.00 1 foo 1 335s 2 2.25 1 foo 2 335s 3 4.00 1 foo 3 335s 4 1.00 2 foo 4 335s > as.data.frame(st, add_max=TRUE)[1:4,] 335s x y band x_max y_max X 335s 1 0.5 0.5 foo 1.5 1.5 1 335s 2 1.5 0.5 foo 3.0 1.5 2 335s 3 3.0 0.5 foo 5.0 1.5 3 335s 4 0.5 1.5 foo 1.5 2.5 4 335s > st_bbox(st) 335s xmin ymin xmax ymax 335s 0.5 0.5 5.0 3.5 335s > 335s > # rectilinear with midpoints given, point support 335s > xd = c(1, 2, 4) 335s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE, point = TRUE) 335s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 335s stars object with 3 dimensions and 1 attribute 335s attribute(s): 335s Min. 1st Qu. Median Mean 3rd Qu. Max. 335s X 1 5.25 9.5 9.5 13.75 18 335s dimension(s): 335s from to offset delta point values x/y 335s x 1 3 NA NA TRUE 1, 2, 4 [x] 335s y 1 3 0.5 1 TRUE NULL [y] 335s band 1 2 NA NA TRUE foo, bar 335s > as.data.frame(st, add_max=FALSE)[1:4,] 335s x y band X 335s 1 1 1 foo 1 335s 2 2 1 foo 2 335s 3 4 1 foo 3 335s 4 1 2 foo 4 335s > as.data.frame(st, add_max=TRUE)[1:4,] 335s x y band x_max y_max X 335s 1 1 0.5 foo 1 1.5 1 335s 2 2 0.5 foo 2 1.5 2 335s 3 4 0.5 foo 4 1.5 3 335s 4 1 1.5 foo 1 2.5 4 335s > st_bbox(st) 335s xmin ymin xmax ymax 335s 1.0 0.5 4.0 3.5 335s > 335s > # rectilinear with start/end given: 335s > #xd = stars:::make_intervals(start = c(1,2,4), end = c(2, 4, 8)) 335s > xd = c(1, 2, 4, 8) # one more than dim of the data array 335s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 335s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 335s stars object with 3 dimensions and 1 attribute 335s attribute(s): 335s Min. 1st Qu. Median Mean 3rd Qu. Max. 335s X 1 5.25 9.5 9.5 13.75 18 335s dimension(s): 335s from to offset delta point values x/y 335s x 1 3 NA NA FALSE [1,2), [2,4), [4,8) [x] 335s y 1 3 1 1 FALSE NULL [y] 335s band 1 2 NA NA FALSE foo, bar 335s > as.data.frame(st, add_max=FALSE)[1:4,] 335s x y band X 335s 1 1.5 1.5 foo 1 335s 2 3.0 1.5 foo 2 335s 3 6.0 1.5 foo 3 335s 4 1.5 2.5 foo 4 335s > as.data.frame(st, add_max=TRUE)[1:4,] 335s x y band x_max y_max X 335s 1 1 1 foo 2 2 1 335s 2 2 1 foo 4 2 2 335s 3 4 1 foo 8 2 3 335s 4 1 2 foo 2 3 4 335s > st_bbox(st) 335s xmin ymin xmax ymax 335s 1 1 8 4 335s > 335s > # with sfc: 335s > sfc = st_sfc(st_point(0:1), st_point(2:1), st_point(4:3)) 335s > d = st_dimensions(x = sfc, y = 1:3, band = c("foo", "bar")) 335s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 335s stars object with 3 dimensions and 1 attribute 335s attribute(s): 335s Min. 1st Qu. Median Mean 3rd Qu. Max. 335s X 1 5.25 9.5 9.5 13.75 18 335s dimension(s): 335s from to offset delta point values 335s x 1 3 NA NA TRUE POINT (0 1),...,POINT (4 3) 335s y 1 3 1 1 FALSE NULL 335s band 1 2 NA NA FALSE foo, bar 335s > as.data.frame(st, add_max=FALSE)[1:4,] 335s x y band X 335s 1 POINT (0 1) 1 foo 1 335s 2 POINT (2 1) 1 foo 2 335s 3 POINT (4 3) 1 foo 3 335s 4 POINT (0 1) 2 foo 4 335s > st_as_sf(st, long = TRUE)[1:4,] 335s Simple feature collection with 4 features and 3 fields 335s Geometry type: POINT 335s Dimension: XY 335s Bounding box: xmin: 0 ymin: 1 xmax: 4 ymax: 3 335s CRS: NA 335s y band X x 335s 1 1 foo 1 POINT (0 1) 335s 2 1 foo 2 POINT (2 1) 335s 3 1 foo 3 POINT (4 3) 335s 4 2 foo 4 POINT (0 1) 335s > st_bbox(st) 335s xmin ymin xmax ymax 335s 0 1 4 3 335s > 335s > # rotated/sheared: 335s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), affine = c(0.2, -0.2)) 335s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 335s stars object with 3 dimensions and 1 attribute 335s attribute(s): 335s Min. 1st Qu. Median Mean 3rd Qu. Max. 335s X 1 5.25 9.5 9.5 13.75 18 335s dimension(s): 335s from to offset delta point values x/y 335s x 1 3 1 1 FALSE NULL [x] 335s y 1 3 1 1 FALSE NULL [y] 335s band 1 2 NA NA FALSE foo, bar 335s sheared raster with parameters: 0.2 -0.2 335s > as.data.frame(st, add_max=FALSE)[1:4,] 335s x y X 335s 1 1.6 1.4 1 335s 2 2.6 1.2 2 335s 3 3.6 1.0 3 335s 4 1.8 2.4 4 335s > try(as.data.frame(st, add_max=TRUE)[1:4,]) # errors 335s > Error in st_coordinates.stars(x, add_max = add_max, center = center, ...) : 335s add_max will not work for rotated/shared rasters 335s st_bbox(st) 335s xmin ymin xmax ymax 335s 1.0 0.4 4.6 4.0 335s > 335s > # curvilinear: 335s > set.seed(13531) 335s > lon = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 335s > lat = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 335s > ll = setNames(c(lon, lat), c("lon", "lat")) 335s > d = st_dimensions(lon = 1:3, lat = 1:3) 335s > a = st_as_stars(list(X = array(1:9, c(3,3))), dimensions = d) 335s > (st = st_as_stars(a, curvilinear = ll)) 335s stars object with 2 dimensions and 1 attribute 335s attribute(s): 335s Min. 1st Qu. Median Mean 3rd Qu. Max. 335s X 1 3 5 5 7 9 335s dimension(s): 335s from to refsys point values x/y 335s lon 1 3 WGS 84 (CRS84) FALSE [3x3] 0.03,...,0.89 [x] 335s lat 1 3 WGS 84 (CRS84) FALSE [3x3] 0.021,...,0.89 [y] 335s curvilinear grid 335s > as.data.frame(st) 335s lon lat X 335s 1 0.89 0.250 1 335s 2 0.64 0.510 2 335s 3 0.30 0.670 3 335s 4 0.69 0.890 4 335s 5 0.47 0.890 5 335s 6 0.26 0.190 6 335s 7 0.57 0.021 7 335s 8 0.27 0.220 8 335s 9 0.03 0.340 9 335s > st_bbox(st) 335s xmin ymin xmax ymax 335s 0.030 0.021 0.890 0.890 335s > 335s > # time regular: 335s > t = as.Date("2019-01-20") + 0:3 335s > d = st_dimensions(t, sfc) 335s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 335s stars object with 2 dimensions and 1 attribute 335s attribute(s): 335s Min. 1st Qu. Median Mean 3rd Qu. Max. 335s a 1 3.75 6.5 6.5 9.25 12 335s dimension(s): 335s from to offset delta refsys point values 335s X1 1 4 2019-01-20 1 days Date FALSE NULL 335s X2 1 3 NA NA NA TRUE POINT (0 1),...,POINT (4 3) 335s > as.data.frame(st) 335s X1 X2 a 335s 1 2019-01-20 POINT (0 1) 1 335s 2 2019-01-21 POINT (0 1) 2 335s 3 2019-01-22 POINT (0 1) 3 335s 4 2019-01-23 POINT (0 1) 4 335s 5 2019-01-20 POINT (2 1) 5 335s 6 2019-01-21 POINT (2 1) 6 335s 7 2019-01-22 POINT (2 1) 7 335s 8 2019-01-23 POINT (2 1) 8 335s 9 2019-01-20 POINT (4 3) 9 335s 10 2019-01-21 POINT (4 3) 10 335s 11 2019-01-22 POINT (4 3) 11 335s 12 2019-01-23 POINT (4 3) 12 335s > 335s > # time, rectilinear 335s > t = as.Date("2019-01-20") + c(0, 2, 3, 10) 335s > d = st_dimensions(t, sfc) 335s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 335s stars object with 2 dimensions and 1 attribute 335s attribute(s): 335s Min. 1st Qu. Median Mean 3rd Qu. Max. 335s a 1 3.75 6.5 6.5 9.25 12 335s dimension(s): 335s from to refsys point values 335s X1 1 4 Date FALSE 2019-01-20,...,2019-01-30 335s X2 1 3 NA TRUE POINT (0 1),...,POINT (4 3) 335s > as.data.frame(st) 335s X1 X2 a 335s 1 2019-01-20 POINT (0 1) 1 335s 2 2019-01-22 POINT (0 1) 2 335s 3 2019-01-23 POINT (0 1) 3 335s 4 2019-01-30 POINT (0 1) 4 335s 5 2019-01-20 POINT (2 1) 5 335s 6 2019-01-22 POINT (2 1) 6 335s 7 2019-01-23 POINT (2 1) 7 335s 8 2019-01-30 POINT (2 1) 8 335s 9 2019-01-20 POINT (4 3) 9 335s 10 2019-01-22 POINT (4 3) 10 335s 11 2019-01-23 POINT (4 3) 11 335s 12 2019-01-30 POINT (4 3) 12 335s > 335s BEGIN TEST mdim.R 335s 335s R version 4.3.2 (2023-10-31) -- "Eye Holes" 335s Copyright (C) 2023 The R Foundation for Statistical Computing 335s Platform: x86_64-pc-linux-gnu (64-bit) 335s 335s R is free software and comes with ABSOLUTELY NO WARRANTY. 335s You are welcome to redistribute it under certain conditions. 335s Type 'license()' or 'licence()' for distribution details. 335s 335s R is a collaborative project with many contributors. 335s Type 'contributors()' for more information and 335s 'citation()' on how to cite R or R packages in publications. 335s 335s Type 'demo()' for some demos, 'help()' for on-line help, or 335s 'help.start()' for an HTML browser interface to help. 335s Type 'q()' to quit R. 335s 335s > Sys.setenv(TZ="") 335s > suppressPackageStartupMessages(library(stars)) 336s > matrix(1:4,2) 336s [,1] [,2] 336s [1,] 1 3 336s [2,] 2 4 336s > m = matrix(1:4,2) 336s > s = st_as_stars(m) 336s > 336s > s = st_set_dimensions(s, st_dimensions(s), xy = NULL) 336s > sfc = st_sfc(st_point(0:1), st_point(3:2)) 336s > s = st_set_dimensions(s, 1, sfc) |> st_set_crs(4326) 336s > tm = as.POSIXct("2023-03-04 12:35") + c(0, 3600) 336s > (s = st_set_dimensions(s, 2, tm)) 336s stars object with 2 dimensions and 1 attribute 336s attribute(s): 336s Min. 1st Qu. Median Mean 3rd Qu. Max. 336s A1 1 1.75 2.5 2.5 3.25 4 336s dimension(s): 336s from to offset delta refsys point 336s X1 1 2 NA NA WGS 84 TRUE 336s X2 1 2 2023-03-04 12:35:00 Universal 1 hours POSIXct FALSE 336s values 336s X1 POINT (0 1), POINT (3 2) 336s X2 NULL 336s > f = tempfile(fileext = ".nc") 336s > if (compareVersion(sf_extSoftVersion()["GDAL"], "3.4.0") > -1) { 336s + write_mdim(s, f, as_float = FALSE) 336s + s2 = read_mdim(f) 336s + print(s2) 336s + print(all.equal(s, s2, check.attributes = FALSE)) 336s + print(all.equal(s, s2)) 336s + 336s + st_crs(sfc) = st_crs(s2) 336s + st_crs(s) = st_crs(s2) 336s + tm = as.Date("2023-02-25") + 0:1 336s + sd = st_set_dimensions(s, 2, tm) 336s + print(sd) 336s + sd = st_set_dimensions(sd, 1, sfc) 336s + print(sd) 336s + f = tempfile(fileext = ".nc") 336s + write_mdim(sd, f) 336s + sd2 = read_mdim(f) 336s + print(sd2) 336s + print(all.equal(sd, sd2, check.attributes = FALSE)) 336s + print(all.equal(sd, sd2)) 336s + } 336s stars object with 2 dimensions and 1 attribute 336s attribute(s): 336s Min. 1st Qu. Median Mean 3rd Qu. Max. 336s A1 1 1.75 2.5 2.5 3.25 4 336s dimension(s): 336s from to offset delta refsys point 336s X1 1 2 NA NA WGS 84 TRUE 336s X2 1 2 2023-03-04 12:35:00 UTC 1 hours POSIXct NA 336s values 336s X1 POINT (0 1), POINT (3 2) 336s X2 NULL 336s [1] TRUE 336s [1] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"input\": 1 string mismatch >" 336s [2] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"wkt\": 1 string mismatch >" 336s [3] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"input\": 1 string mismatch > >" 336s [4] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"wkt\": 1 string mismatch > >" 336s [5] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"offset\": 'tzone' attributes are inconsistent ('' and 'UTC') >" 336s [6] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 336s stars object with 2 dimensions and 1 attribute 336s attribute(s): 336s Min. 1st Qu. Median Mean 3rd Qu. Max. 336s A1 1 1.75 2.5 2.5 3.25 4 336s dimension(s): 336s from to offset delta refsys point values 336s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 336s X2 1 2 2023-02-25 1 days Date FALSE NULL 336s stars object with 2 dimensions and 1 attribute 336s attribute(s): 336s Min. 1st Qu. Median Mean 3rd Qu. Max. 336s A1 1 1.75 2.5 2.5 3.25 4 336s dimension(s): 336s from to offset delta refsys point values 336s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 336s X2 1 2 2023-02-25 1 days Date FALSE NULL 336s stars object with 2 dimensions and 1 attribute 336s attribute(s): 336s Min. 1st Qu. Median Mean 3rd Qu. Max. 336s A1 1 1.75 2.5 2.5 3.25 4 336s dimension(s): 336s from to offset delta refsys point values 336s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 336s X2 1 2 2023-02-25 1 days Date NA NULL 336s [1] TRUE 336s [1] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 336s Warning messages: 336s 1: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 336s GDAL Error 6: SetIndexingVariable() not implemented 336s 2: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 336s GDAL Error 6: SetIndexingVariable() not implemented 336s 3: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 336s GDAL Error 6: SetIndexingVariable() not implemented 336s 4: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 336s GDAL Error 6: SetIndexingVariable() not implemented 336s > 336s BEGIN TEST nc.R 336s 336s R version 4.3.2 (2023-10-31) -- "Eye Holes" 336s Copyright (C) 2023 The R Foundation for Statistical Computing 336s Platform: x86_64-pc-linux-gnu (64-bit) 336s 336s R is free software and comes with ABSOLUTELY NO WARRANTY. 336s You are welcome to redistribute it under certain conditions. 336s Type 'license()' or 'licence()' for distribution details. 336s 336s R is a collaborative project with many contributors. 336s Type 'contributors()' for more information and 336s 'citation()' on how to cite R or R packages in publications. 336s 336s Type 'demo()' for some demos, 'help()' for on-line help, or 336s 'help.start()' for an HTML browser interface to help. 336s Type 'q()' to quit R. 336s 336s > # examples with the sf::nc polygon dataset NOT ABOUT NETCDF's, see e.g. stars.R netcdf.R 336s > suppressPackageStartupMessages(library(sf)) 337s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 337s > m = st_set_geometry(nc, NULL) 337s > n = as.matrix(m[c("BIR74", "SID74", "NWBIR74", "BIR79", "SID79", "NWBIR79")]) 337s > dim(n) = c(county = 100, var = 3, year = 2) 337s > dimnames(n) = list(county = nc$NAME, var = c("BIR", "SID", "NWBIR"), year = c(1974, 1979)) 337s > suppressPackageStartupMessages(library(stars)) 337s > (st = st_as_stars(pop = n)) 337s stars object with 3 dimensions and 1 attribute 337s attribute(s): 337s Min. 1st Qu. Median Mean 3rd Qu. Max. 337s pop 0 8 538 1657.032 1784 30757 337s dimension(s): 337s from to values 337s county 1 100 Ashe,...,Brunswick 337s var 1 3 BIR , SID , NWBIR 337s year 1 2 1974, 1979 337s > foo <- st %>% st_set_dimensions(1, st_geometry(nc)) # %>% st_set_dimensions(3, c(1974, 1979)) 337s > st %>% st_set_dimensions(1, st_geometry(nc)) %>% st_set_dimensions(names = c("geometries", "var", "year")) 337s stars object with 3 dimensions and 1 attribute 337s attribute(s): 337s Min. 1st Qu. Median Mean 3rd Qu. Max. 337s pop 0 8 538 1657.032 1784 30757 337s dimension(s): 337s from to refsys point 337s geometries 1 100 NAD27 FALSE 337s var 1 3 NA NA 337s year 1 2 NA NA 337s values 337s geometries MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 337s var BIR , SID , NWBIR 337s year 1974, 1979 337s > foo 337s stars object with 3 dimensions and 1 attribute 337s attribute(s): 337s Min. 1st Qu. Median Mean 3rd Qu. Max. 337s pop 0 8 538 1657.032 1784 30757 337s dimension(s): 337s from to refsys point 337s county 1 100 NAD27 FALSE 337s var 1 3 NA NA 337s year 1 2 NA NA 337s values 337s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 337s var BIR , SID , NWBIR 337s year 1974, 1979 337s > st_bbox(foo) 337s xmin ymin xmax ymax 337s -84.32385 33.88199 -75.45698 36.58965 337s > (x = st_as_sf(foo)) 337s Simple feature collection with 100 features and 6 fields 337s Geometry type: MULTIPOLYGON 337s Dimension: XY 337s Bounding box: xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965 337s Geodetic CRS: NAD27 337s First 10 features: 337s BIR.1974 SID.1974 NWBIR.1974 BIR.1979 SID.1979 NWBIR.1979 337s 1 1091 1 10 1364 0 19 337s 2 487 0 10 542 3 12 337s 3 3188 5 208 3616 6 260 337s 4 508 1 123 830 2 145 337s 5 1421 9 1066 1606 3 1197 337s 6 1452 7 954 1838 5 1237 337s 7 286 0 115 350 2 139 337s 8 420 0 254 594 2 371 337s 9 968 4 748 1190 2 844 337s 10 1612 1 160 2038 5 176 337s county 337s 1 MULTIPOLYGON (((-81.47276 3... 337s 2 MULTIPOLYGON (((-81.23989 3... 337s 3 MULTIPOLYGON (((-80.45634 3... 337s 4 MULTIPOLYGON (((-76.00897 3... 337s 5 MULTIPOLYGON (((-77.21767 3... 337s 6 MULTIPOLYGON (((-76.74506 3... 337s 7 MULTIPOLYGON (((-76.00897 3... 337s 8 MULTIPOLYGON (((-76.56251 3... 337s 9 MULTIPOLYGON (((-78.30876 3... 337s 10 MULTIPOLYGON (((-80.02567 3... 337s > frac = function(x) x[2] / x[1] 337s > frac2 = function(x) c(sidsr = x[2] / x[1], nwbr = x[3] / x[1]) 337s > frac2an = function(x) c(x[2] / x[1], x[3] / x[1]) 337s > st_apply(foo, c(1,3), frac) 337s stars object with 2 dimensions and 1 attribute 337s attribute(s): 337s Min. 1st Qu. Median Mean 3rd Qu. Max. 337s frac 0 0.001197874 0.001930504 0.002042241 0.002599348 0.00955414 337s dimension(s): 337s from to refsys point 337s county 1 100 NAD27 FALSE 337s year 1 2 NA NA 337s values 337s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 337s year 1974, 1979 337s > st_apply(foo, c(1,3), frac2) 337s stars object with 3 dimensions and 1 attribute 337s attribute(s): 337s Min. 1st Qu. Median Mean 3rd Qu. Max. 337s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 337s dimension(s): 337s from to refsys point 337s frac2 1 2 NA NA 337s county 1 100 NAD27 FALSE 337s year 1 2 NA NA 337s values 337s frac2 sidsr, nwbr 337s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 337s year 1974, 1979 337s > st_apply(foo, c(1,3), frac2an) 337s stars object with 3 dimensions and 1 attribute 337s attribute(s): 337s Min. 1st Qu. Median Mean 3rd Qu. Max. 337s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 337s dimension(s): 337s from to refsys point 337s frac2an 1 2 NA NA 337s county 1 100 NAD27 FALSE 337s year 1 2 NA NA 337s values 337s frac2an NULL 337s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 337s year 1974, 1979 337s > library(abind) 337s > (x = aperm(st_apply(foo, c(1,3), frac2), c(2,3,1))) 337s stars object with 3 dimensions and 1 attribute 337s attribute(s): 337s Min. 1st Qu. Median Mean 3rd Qu. Max. 337s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 337s dimension(s): 337s from to refsys point 337s county 1 100 NAD27 FALSE 337s year 1 2 NA NA 337s frac2 1 2 NA NA 337s values 337s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 337s year 1974, 1979 337s frac2 sidsr, nwbr 337s > y = aperm(st_apply(foo, c(1,3), frac2), c("county","year","frac2")) 337s > all.equal(st_dimensions(x), st_dimensions(y)) 337s [1] TRUE 337s > 337s > split(foo, 2) 337s stars object with 2 dimensions and 3 attributes 337s attribute(s): 337s Min. 1st Qu. Median Mean 3rd Qu. Max. 337s BIR 248 1176.75 2265 3761.770 4450.75 30757 337s SID 0 2.00 5 7.515 9.00 57 337s NWBIR 1 206.00 742 1201.810 1315.75 11631 337s dimension(s): 337s from to refsys point 337s county 1 100 NAD27 FALSE 337s year 1 2 NA NA 337s values 337s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 337s year 1974, 1979 337s > split(foo, 3) 337s stars object with 2 dimensions and 2 attributes 337s attribute(s): 337s Min. 1st Qu. Median Mean 3rd Qu. Max. 337s 1974 0 8 501.5 1452.367 1580.50 21588 337s 1979 0 9 614.0 1861.697 2040.25 30757 337s dimension(s): 337s from to refsys point 337s county 1 100 NAD27 FALSE 337s var 1 3 NA NA 337s values 337s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 337s var BIR , SID , NWBIR 337s > 337s > st_crs(foo) 337s Coordinate Reference System: 337s User input: NAD27 337s wkt: 337s GEOGCRS["NAD27", 337s DATUM["North American Datum 1927", 337s ELLIPSOID["Clarke 1866",6378206.4,294.978698213898, 337s LENGTHUNIT["metre",1]]], 337s PRIMEM["Greenwich",0, 337s ANGLEUNIT["degree",0.0174532925199433]], 337s CS[ellipsoidal,2], 337s AXIS["geodetic latitude (Lat)",north, 337s ORDER[1], 337s ANGLEUNIT["degree",0.0174532925199433]], 337s AXIS["geodetic longitude (Lon)",east, 337s ORDER[2], 337s ANGLEUNIT["degree",0.0174532925199433]], 337s USAGE[ 337s SCOPE["Geodesy."], 337s AREA["North and central America: Antigua and Barbuda - onshore. Bahamas - onshore plus offshore over internal continental shelf only. Belize - onshore. British Virgin Islands - onshore. Canada onshore - Alberta, British Columbia, Manitoba, New Brunswick, Newfoundland and Labrador, Northwest Territories, Nova Scotia, Nunavut, Ontario, Prince Edward Island, Quebec, Saskatchewan and Yukon - plus offshore east coast. Cuba - onshore and offshore. El Salvador - onshore. Guatemala - onshore. Honduras - onshore. Panama - onshore. Puerto Rico - onshore. Mexico - onshore plus offshore east coast. Nicaragua - onshore. United States (USA) onshore and offshore - Alabama, Alaska, Arizona, Arkansas, California, Colorado, Connecticut, Delaware, Florida, Georgia, Idaho, Illinois, Indiana, Iowa, Kansas, Kentucky, Louisiana, Maine, Maryland, Massachusetts, Michigan, Minnesota, Mississippi, Missouri, Montana, Nebraska, Nevada, New Hampshire, New Jersey, New Mexico, New York, North Carolina, North Dakota, Ohio, Oklahoma, Oregon, Pennsylvania, Rhode Island, South Carolina, South Dakota, Tennessee, Texas, Utah, Vermont, Virginia, Washington, West Virginia, Wisconsin and Wyoming - plus offshore . US Virgin Islands - onshore."], 337s BBOX[7.15,167.65,83.17,-47.74]], 337s ID["EPSG",4267]] 337s > plot(foo) 337s > 337s > # subset vector cube: 337s > foo[nc[1]] 337s stars object with 3 dimensions and 1 attribute 337s attribute(s): 337s Min. 1st Qu. Median Mean 3rd Qu. Max. 337s pop 0 8 538 1657.032 1784 30757 337s dimension(s): 337s from to refsys point 337s county 1 100 NAD27 FALSE 337s var 1 3 NA NA 337s year 1 2 NA NA 337s values 337s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 337s var BIR , SID , NWBIR 337s year 1974, 1979 337s > 337s BEGIN TEST plot.R 337s 337s R version 4.3.2 (2023-10-31) -- "Eye Holes" 337s Copyright (C) 2023 The R Foundation for Statistical Computing 337s Platform: x86_64-pc-linux-gnu (64-bit) 337s 337s R is free software and comes with ABSOLUTELY NO WARRANTY. 337s You are welcome to redistribute it under certain conditions. 337s Type 'license()' or 'licence()' for distribution details. 337s 337s R is a collaborative project with many contributors. 337s Type 'contributors()' for more information and 337s 'citation()' on how to cite R or R packages in publications. 337s 337s Type 'demo()' for some demos, 'help()' for on-line help, or 337s 'help.start()' for an HTML browser interface to help. 337s Type 'q()' to quit R. 337s 337s > suppressPackageStartupMessages(library(stars)) 338s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 338s + data(air) # this loads several datasets in .GlobalEnv 338s + dim(air) 338s + d = st_dimensions(station = st_as_sfc(stations), time = dates) 338s + aq = st_as_stars(list(PM10 = air), dimensions = d) 338s + image(aperm(log(aq), 2:1), main = "NA pattern (white) in PM10 station time series") 338s + st_geometry(aq) 338s + } 339s Geometry set for 70 features 339s Geometry type: POINT 339s Dimension: XY 339s Bounding box: xmin: 6.28107 ymin: 47.80847 xmax: 14.78617 ymax: 54.92497 339s Geodetic CRS: +proj=longlat +datum=WGS84 +no_defs 339s First 5 geometries: 339s POINT (9.585911 53.67057) 339s POINT (9.68503 53.52418) 339s POINT (9.791584 54.07312) 339s POINT (13.64701 52.44775) 339s POINT (13.29635 52.65315) 339s > 339s > csv = system.file("tif/ESACCI-LC-Legend.csv", package = "starsdata") 339s > if (csv != "") { 339s + rgb = read.csv(csv, header = TRUE, sep = ";") 339s + luc = read_stars(system.file("tif/LUC3.tif", package = "starsdata")) 339s + plot(luc, rgb = rgb, axes = TRUE, key.pos = NULL) 339s + } 339s > 339s > # https://github.com/r-spatial/stars/issues/233 : 339s > nc = read_sf(system.file("shape/nc.shp", package = "sf")) 339s > output = st_as_stars(st_bbox(nc), nx = 1, ny = 1, values = 1) 339s > plot(output) 339s Warning message: 339s In plot.stars(output) : 339s breaks="quantile" leads to a single class; maybe try breaks="equal" instead? 339s > 339s BEGIN TEST predict.R 339s 339s R version 4.3.2 (2023-10-31) -- "Eye Holes" 339s Copyright (C) 2023 The R Foundation for Statistical Computing 339s Platform: x86_64-pc-linux-gnu (64-bit) 339s 339s R is free software and comes with ABSOLUTELY NO WARRANTY. 339s You are welcome to redistribute it under certain conditions. 339s Type 'license()' or 'licence()' for distribution details. 339s 339s R is a collaborative project with many contributors. 339s Type 'contributors()' for more information and 339s 'citation()' on how to cite R or R packages in publications. 339s 339s Type 'demo()' for some demos, 'help()' for on-line help, or 339s 'help.start()' for an HTML browser interface to help. 339s Type 'q()' to quit R. 339s 339s > suppressPackageStartupMessages(library(stars)) 340s > # predict: 340s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 340s > (x = read_stars(tif)) 340s stars object with 3 dimensions and 1 attribute 340s attribute(s): 340s Min. 1st Qu. Median Mean 3rd Qu. Max. 340s L7_ETMs.tif 1 54 69 68.91242 86 255 340s dimension(s): 340s from to offset delta refsys point x/y 340s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 340s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 340s band 1 6 NA NA NA NA 340s > st_crs(x) = st_crs(x) # cleans trailing space 340s > model = lm(x~L7_ETMs.tif, head(as.data.frame(x), 50)) 340s > x = predict(x, model) 341s > 341s > (y = read_stars(tif, proxy = TRUE)) 341s stars_proxy object with 1 attribute in 1 file(s): 341s $L7_ETMs.tif 341s [1] "[...]/L7_ETMs.tif" 341s 341s dimension(s): 341s from to offset delta refsys point x/y 341s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 341s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 341s band 1 6 NA NA NA NA 341s > (yp = predict(y, model)) 341s stars_proxy object with 1 attribute in 1 file(s): 341s $L7_ETMs.tif 341s [1] "[...]/L7_ETMs.tif" 341s 341s dimension(s): 341s from to offset delta refsys point x/y 341s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 341s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 341s band 1 6 NA NA NA NA 341s call_list: 341s [[1]] 341s predict(object = object, model = model) 341s attr(,".Environment") 341s 341s 341s This object has pending lazy operations: dimensions as printed may not reflect this. 341s > all.equal(x, st_as_stars(yp)) 342s [1] TRUE 342s > 342s > yy = st_set_dimensions(y, 3, values = paste0("band", 1:6)) 342s > (y_spl = split(yy, 3)) 342s stars_proxy object with 1 attribute in 1 file(s): 342s $L7_ETMs.tif 342s [1] "[...]/L7_ETMs.tif" 342s 342s dimension(s): 342s from to offset delta refsys point values 342s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 342s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 342s band 1 6 NA NA NA NA band1,...,band6 342s x/y 342s x [x] 342s y [y] 342s band 342s call_list: 342s [[1]] 342s split(x = x, 3) 342s attr(,".Environment") 342s 342s 342s This object has pending lazy operations: dimensions as printed may not reflect this. 342s > as.data.frame(st_as_stars(split(yy, 3)))[1:3,] 342s x y band1 band2 band3 band4 band5 band6 342s 1 288790.5 9120747 69 56 46 79 86 46 342s 2 288819.0 9120747 69 57 49 75 88 49 342s 3 288847.5 9120747 63 52 45 66 75 41 342s > 342s BEGIN TEST proxy.R 342s 342s R version 4.3.2 (2023-10-31) -- "Eye Holes" 342s Copyright (C) 2023 The R Foundation for Statistical Computing 342s Platform: x86_64-pc-linux-gnu (64-bit) 342s 342s R is free software and comes with ABSOLUTELY NO WARRANTY. 342s You are welcome to redistribute it under certain conditions. 342s Type 'license()' or 'licence()' for distribution details. 342s 342s R is a collaborative project with many contributors. 342s Type 'contributors()' for more information and 342s 'citation()' on how to cite R or R packages in publications. 342s 342s Type 'demo()' for some demos, 'help()' for on-line help, or 342s 'help.start()' for an HTML browser interface to help. 342s Type 'q()' to quit R. 342s 342s > Sys.setenv(TZ="UTC") 342s > suppressPackageStartupMessages(library(sf)) 343s > suppressPackageStartupMessages(library(stars)) 343s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 343s > (r = read_stars(tif, proxy = TRUE)) 343s stars_proxy object with 1 attribute in 1 file(s): 343s $L7_ETMs.tif 343s [1] "[...]/L7_ETMs.tif" 343s 343s dimension(s): 343s from to offset delta refsys point x/y 343s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 343s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 343s band 1 6 NA NA NA NA 343s > if (interactive()) { 343s + plot(r) 343s + } 343s > dim(r) 343s x y band 343s 349 352 6 343s > r[,,,2:3] 343s stars_proxy object with 1 attribute in 1 file(s): 343s $L7_ETMs.tif 343s [1] "[...]/L7_ETMs.tif" 343s 343s dimension(s): 343s from to offset delta refsys point x/y 343s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 343s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 343s band 2 3 NA NA NA NA 343s > r+r 343s stars_proxy object with 1 attribute in 1 file(s): 343s $L7_ETMs.tif 343s [1] "[...]/L7_ETMs.tif" 343s 343s dimension(s): 343s from to offset delta refsys point x/y 343s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 343s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 343s band 1 6 NA NA NA NA 343s call_list: 343s [[1]] 343s e1 + e2 343s attr(,".Environment") 343s 343s 343s This object has pending lazy operations: dimensions as printed may not reflect this. 343s > st_as_stars(sin(r), downsample = 2) 343s stars object with 3 dimensions and 1 attribute 343s attribute(s): 343s Min. 1st Qu. Median Mean 3rd Qu. Max. 343s L7_ETMs.tif -0.9999902 -0.676772 0.0353983 0.01655317 0.7210377 0.9999119 343s dimension(s): 343s from to offset delta refsys point x/y 343s x 1 117 288776 85.01 SIRGAS 2000 / UTM zone 25S FALSE [x] 343s y 1 118 9120761 -85.02 SIRGAS 2000 / UTM zone 25S FALSE [y] 343s band 1 6 NA NA NA NA 343s > aperm(r, c(3,2,1)) 343s stars_proxy object with 1 attribute in 1 file(s): 343s $L7_ETMs.tif 343s [1] "[...]/L7_ETMs.tif" 343s 343s dimension(s): 343s from to offset delta refsys point x/y 343s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 343s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 343s band 1 6 NA NA NA NA 343s call_list: 343s [[1]] 343s aperm(a = a, perm = perm) 343s attr(,".Environment") 343s 343s 343s This object has pending lazy operations: dimensions as printed may not reflect this. 343s > if (interactive()) { 343s + plot(r) 343s + } 343s > (xx = c(r,r)) 343s stars_proxy object with 2 attributes in 2 file(s): 343s $L7_ETMs.tif 343s [1] "[...]/L7_ETMs.tif" 343s 343s $L7_ETMs.tif 343s [1] "[...]/L7_ETMs.tif" 343s 343s dimension(s): 343s from to offset delta refsys point x/y 343s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 343s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 343s band 1 6 NA NA NA NA 343s > st_redimension(xx) 343s stars_proxy object with 1 attribute in 2 file(s): 343s $L7_ETMs.tif.L7_ETMs.tif 343s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 343s 343s dimension(s): 343s from to offset delta refsys point 343s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 343s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 343s band 1 6 NA NA NA NA 343s new_dim 1 2 NA NA NA NA 343s values x/y 343s x NULL [x] 343s y NULL [y] 343s band NULL 343s new_dim L7_ETMs.tif, L7_ETMs.tif 343s > st_as_stars(r) 343s stars object with 3 dimensions and 1 attribute 343s attribute(s): 343s Min. 1st Qu. Median Mean 3rd Qu. Max. 343s L7_ETMs.tif 1 54 69 68.91242 86 255 343s dimension(s): 343s from to offset delta refsys point x/y 343s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 343s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 343s band 1 6 NA NA NA NA 343s > (y = st_apply(r, 1:2, max)) 343s stars_proxy object with 1 attribute in 1 file(s): 343s $L7_ETMs.tif 343s [1] "[...]/L7_ETMs.tif" 343s 343s dimension(s): 343s from to offset delta refsys point x/y 343s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 343s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 343s band 1 6 NA NA NA NA 343s call_list: 343s [[1]] 343s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 343s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 343s attr(,".Environment") 343s 343s 343s This object has pending lazy operations: dimensions as printed may not reflect this. 343s > (yy = st_as_stars(y, downsample = 1)) 344s stars object with 2 dimensions and 1 attribute 344s attribute(s): 344s Min. 1st Qu. Median Mean 3rd Qu. Max. 344s max 55 85 96 99.38568 113 255 344s dimension(s): 344s from to offset delta refsys point x/y 344s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 344s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 344s > (y = adrop(st_apply(r, c("x", "y"), max))) 344s stars_proxy object with 1 attribute in 1 file(s): 344s $L7_ETMs.tif 344s [1] "[...]/L7_ETMs.tif" 344s 344s dimension(s): 344s from to offset delta refsys point x/y 344s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 344s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 344s band 1 6 NA NA NA NA 344s call_list: 344s [[1]] 344s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 344s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 344s attr(,".Environment") 344s 344s 344s [[2]] 344s adrop(x = x, drop = drop) 344s attr(,".Environment") 344s 344s 344s This object has pending lazy operations: dimensions as printed may not reflect this. 344s > (yy = st_as_stars(y, downsample = 1)) 344s stars object with 2 dimensions and 1 attribute 344s attribute(s): 344s Min. 1st Qu. Median Mean 3rd Qu. Max. 344s max 55 85 96 99.38568 113 255 344s dimension(s): 344s from to offset delta refsys point x/y 344s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 344s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 344s > plot(yy) 344s > (y = adrop(st_apply(r, c("x", "band"), max))) 344s stars_proxy object with 1 attribute in 1 file(s): 344s $L7_ETMs.tif 344s [1] "[...]/L7_ETMs.tif" 344s 344s dimension(s): 344s from to offset delta refsys point x/y 344s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 344s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 344s band 1 6 NA NA NA NA 344s call_list: 344s [[1]] 344s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 344s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 344s attr(,".Environment") 344s 344s 344s [[2]] 344s adrop(x = x, drop = drop) 344s attr(,".Environment") 344s 344s 344s This object has pending lazy operations: dimensions as printed may not reflect this. 344s > (yy = st_as_stars(y, downsample = 1)) 344s stars object with 2 dimensions and 1 attribute 344s attribute(s): 344s Min. 1st Qu. Median Mean 3rd Qu. Max. 344s max 77 111 133 137.8505 157 255 344s dimension(s): 344s from to offset delta refsys point 344s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE 344s band 1 6 NA NA NA NA 344s Warning message: 344s In FUN(X[[i]], ...) : 344s st_apply on x/y dimensions applied to downsampled image(s) 344s > rm(yy) 344s > 344s > (xx = c(r,r)) 344s stars_proxy object with 2 attributes in 2 file(s): 344s $L7_ETMs.tif 344s [1] "[...]/L7_ETMs.tif" 344s 344s $L7_ETMs.tif 344s [1] "[...]/L7_ETMs.tif" 344s 344s dimension(s): 344s from to offset delta refsys point x/y 344s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 344s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 344s band 1 6 NA NA NA NA 344s > names(xx) = c("a", "b") 344s > xx["a"] 344s stars_proxy object with 1 attribute in 1 file(s): 344s $a 344s [1] "[...]/L7_ETMs.tif" 344s 344s dimension(s): 344s from to offset delta refsys point x/y 344s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 344s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 344s band 1 6 NA NA NA NA 344s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 344s > buf = st_buffer(st_sfc(pt, crs = st_crs(r)), 1500) 344s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 344s + crs = st_crs(r)) 344s > r = r[buf] # crops 344s > r = r[buf, epsilon = 1e-5] # crops with shrinked bounding box 344s > 344s > # c: 344s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 344s > if (FALSE && f != "") { 344s + files = c("avhrr-only-v2.19810901.nc", 344s + "avhrr-only-v2.19810902.nc", 344s + "avhrr-only-v2.19810903.nc", 344s + "avhrr-only-v2.19810904.nc", 344s + "avhrr-only-v2.19810905.nc", 344s + "avhrr-only-v2.19810906.nc", 344s + "avhrr-only-v2.19810907.nc", 344s + "avhrr-only-v2.19810908.nc", 344s + "avhrr-only-v2.19810909.nc") 344s + l = list() 344s + for (f in files) { 344s + from = system.file(paste0("netcdf/", f), package = "starsdata") 344s + l[[f]] = read_stars(from, sub = c("sst", "anom"), proxy = TRUE) 344s + } 344s + ret = do.call(c, l) 344s + print(ret) 344s + all = system.file(paste0("netcdf/", files), package = "starsdata") 344s + ret = read_stars(all, sub = c("sst", "anom")) 344s + print(ret) 344s + print(st_redimension(ret)) # collapse the two attributes into new dimension 344s + 344s + try(ret <- c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 344s + #print(ret) 344s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 344s + #print(ret) 344s + ret <- st_redimension(l[[1]], along = list(times = as.Date("1981-09-01") + 0:1)) 344s + print(ret) 344s + } 344s > 344s > # demonstrate that environments work: 344s > x = read_stars(tif, proxy = TRUE) 344s > f = function(x) { 344s + g = function(xx) { 344s + ndvi = function(z1, z2, z3, z4, z5, z6) (z2-z1)/(z2+z1) 344s + st_apply(xx, 1:2, ndvi) 344s + } 344s + g(x) 344s + } 344s > (x = f(x)) 344s stars_proxy object with 1 attribute in 1 file(s): 344s $L7_ETMs.tif 344s [1] "[...]/L7_ETMs.tif" 344s 344s dimension(s): 344s from to offset delta refsys point x/y 344s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 344s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 344s band 1 6 NA NA NA NA 344s call_list: 344s [[1]] 344s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 344s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 344s attr(,".Environment") 344s 344s 344s This object has pending lazy operations: dimensions as printed may not reflect this. 344s > st_as_stars(x) 344s stars object with 2 dimensions and 1 attribute 344s attribute(s): 344s Min. 1st Qu. Median Mean 3rd Qu. Max. 344s ndvi -0.2828283 -0.1081081 -0.08287293 -0.08464615 -0.05882353 0.09259259 344s dimension(s): 344s from to offset delta refsys point x/y 344s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 344s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 344s > 344s BEGIN TEST raster.R 344s 344s R version 4.3.2 (2023-10-31) -- "Eye Holes" 344s Copyright (C) 2023 The R Foundation for Statistical Computing 344s Platform: x86_64-pc-linux-gnu (64-bit) 344s 344s R is free software and comes with ABSOLUTELY NO WARRANTY. 344s You are welcome to redistribute it under certain conditions. 344s Type 'license()' or 'licence()' for distribution details. 344s 344s R is a collaborative project with many contributors. 344s Type 'contributors()' for more information and 344s 'citation()' on how to cite R or R packages in publications. 344s 344s Type 'demo()' for some demos, 'help()' for on-line help, or 344s 'help.start()' for an HTML browser interface to help. 344s Type 'q()' to quit R. 344s 344s > options(rgdal_show_exportToProj4_warnings = "none") 344s > suppressPackageStartupMessages(library(stars)) 345s > 345s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require("raster", quietly = TRUE) && 345s + suppressPackageStartupMessages(require("terra", quietly = TRUE))) { 345s + 345s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 345s + (x = read_stars(tif)) 345s + (r = as(x, "Raster")) 345s + (y = st_as_stars(r)) 345s + 345s + # single band: 345s + x = adrop(x[,,,1]) 345s + r = as(x, "Raster") 345s + (y = st_as_stars(r)) 345s + 345s + # proxy: 345s + (x = read_stars(tif, proxy = TRUE)) 345s + (r = as(x, "Raster")) 345s + (y = st_as_stars(r)) 345s + (y2 = st_as_stars(r, proxy = TRUE)) 345s + } 349s stars_proxy object with 1 attribute in 1 file(s): 349s $L7_ETMs.tif 349s [1] "[...]/L7_ETMs.tif" 349s 349s dimension(s): 350s from to offset delta refsys point x/y 350s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 350s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 350s band 1 6 NA NA NA NA 350s > 350s > if (require(terra, quietly = TRUE)) { 350s + ## terra ------------- 350s + stopifnot(require(terra)) 350s + (x = read_stars(tif)) 350s + (r = as(x, "SpatRaster")) 350s + (y = st_as_stars(r)) 350s + 350s + # single band: 350s + x = adrop(x[,,,1]) 350s + r = as(x, "SpatRaster") 350s + (y = st_as_stars(r)) 350s + 350s + # proxy: 350s + (x = read_stars(tif, proxy = TRUE)) 350s + (r = as(x, "SpatRaster")) 350s + (y = st_as_stars(r)) 350s + (y2 = st_as_stars(r, proxy = TRUE)) 350s + 350s + f = system.file("tif/lc.tif", package = "stars") 350s + lc = read_stars(system.file("tif/lc.tif", package = "stars")) 350s + levels(lc[[1]]) 350s + r = rast(lc) 350s + e = attr(lc[[1]], "exclude") 350s + 350s + if (packageVersion("terra") >= "1.5.48") { 350s + 350s + print(all.equal(terra::levels(r)[[1]][,2], terra::levels(rast(f))[[1]][!e,2])) 350s + print(all.equal(terra::coltab(r)[[1]][!e,], terra::coltab(rast(f))[[1]][!e,], check.attributes = FALSE)) 350s + 350s + r<- rast(nrow=10, ncol=10) 350s + set.seed(5) 350s + values(r)<- sample(1:3, size = ncell(r), replace = TRUE) 350s + levels(r) <- data.frame(ID=1:3, category = c("c1", "c2", "c3")) 350s + 350s + r2<- rast(nrow=10, ncol=10) 350s + set.seed(6) 350s + values(r2)<- sample(c(0,2,3), size = ncell(r2), replace = TRUE) 350s + levels(r2) <- data.frame(ID=c(0,2,3), category = c("x1", "x2", "x3")) 350s + 350s + r3<- c(r,r2) 350s + names(r3)<- c("lyr.1", "lyr.2") 350s + 350s + r3_stars<- st_as_stars(r3) 350s + 350s + st_redimension(r3_stars) |> print() 350s + rast(r3_stars) |> levels() |> print() 350s + 350s + m = matrix(1:121, 11, 11) 350s + bb = st_bbox(c(xmin=0, xmax=11, ymin=0, ymax=11)) 350s + s = st_as_stars(bb, values = m) 350s + r = rast(s) 350s + aggregate(r, 2) |> st_as_stars() -> r.s 350s + stopifnot(isTRUE(all.equal(r.s[,1:5,1:5], st_downsample(s, 1, FUN = mean)))) 350s + } 350s + } 350s [1] TRUE 350s [1] TRUE 350s stars object with 3 dimensions and 1 attribute 350s attribute(s): 350s lyr.1.lyr.2 350s c1:34 350s c2:32 350s c3:34 350s x1:28 350s x2:37 350s x3:35 350s dimension(s): 350s from to offset delta refsys values x/y 350s x 1 10 -180 36 WGS 84 (CRS84) NULL [x] 350s y 1 10 90 -18 WGS 84 (CRS84) NULL [y] 350s new_dim 1 2 NA NA NA lyr.1, lyr.2 350s [[1]] 350s IDs categories 350s 1 1 c1 350s 2 2 c2 350s 3 3 c3 350s 350s [[2]] 350s IDs categories 350s 1 0 x1 350s 2 2 x2 350s 3 3 x3 350s 350s > 350s > 350s BEGIN TEST rasterize.R 350s 350s R version 4.3.2 (2023-10-31) -- "Eye Holes" 350s Copyright (C) 2023 The R Foundation for Statistical Computing 350s Platform: x86_64-pc-linux-gnu (64-bit) 350s 350s R is free software and comes with ABSOLUTELY NO WARRANTY. 350s You are welcome to redistribute it under certain conditions. 350s Type 'license()' or 'licence()' for distribution details. 350s 350s R is a collaborative project with many contributors. 350s Type 'contributors()' for more information and 350s 'citation()' on how to cite R or R packages in publications. 350s 350s Type 'demo()' for some demos, 'help()' for on-line help, or 350s 'help.start()' for an HTML browser interface to help. 350s Type 'q()' to quit R. 350s 350s > suppressPackageStartupMessages(library(stars)) 351s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 351s > (x = st_rasterize(nc)) # default grid: 351s stars object with 2 dimensions and 12 attributes 351s attribute(s): 352s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 352s AREA 0.042 0.108 0.142 1.451932e-01 0.181 0.241 30904 352s PERIMETER 0.999 1.461 1.716 1.786110e+00 2.004 3.640 30904 352s CNTY_ 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 352s CNTY_ID 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 352s FIPSNO 37001.000 37049.000 37101.000 3.710042e+04 37153.000 37199.000 30904 352s CRESS_ID 1.000 25.000 51.000 5.071206e+01 77.000 100.000 30904 352s BIR74 248.000 1323.000 2648.000 3.791637e+03 4139.000 21588.000 30904 352s SID74 0.000 3.000 5.000 7.891985e+00 10.000 44.000 30904 352s NWBIR74 1.000 297.000 844.000 1.246210e+03 1396.000 8027.000 30904 352s BIR79 319.000 1606.000 3108.000 4.852046e+03 5400.000 30757.000 30904 352s SID79 0.000 3.000 6.000 9.584098e+00 13.000 57.000 30904 352s NWBIR79 3.000 360.000 1058.000 1.604642e+03 1524.000 11631.000 30904 352s dimension(s): 352s from to offset delta refsys point x/y 352s x 1 461 -84.32 0.01925 NAD27 FALSE [x] 352s y 1 141 36.59 -0.01925 NAD27 FALSE [y] 352s > plot(x, axes = TRUE) 352s > # a bit more customized grid: 352s > (x = st_rasterize(nc, st_as_stars(st_bbox(nc), nx = 100, ny = 50, values = NA_real_))) 352s stars object with 2 dimensions and 12 attributes 352s attribute(s): 352s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 352s AREA 0.042 0.108 0.142 0.145536 0.181 0.241 2373 352s PERIMETER 0.999 1.470 1.716 1.789032 2.004 3.640 2373 352s CNTY_ 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 352s CNTY_ID 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 352s FIPSNO 37001.000 37049.000 37101.000 37100.327750 37151.000 37199.000 2373 352s CRESS_ID 1.000 25.000 51.000 50.663875 76.000 100.000 2373 352s BIR74 248.000 1323.500 2648.000 3790.530263 4139.000 21588.000 2373 352s SID74 0.000 3.000 5.000 7.905976 10.000 44.000 2373 352s NWBIR74 1.000 289.000 844.000 1246.116483 1396.000 8027.000 2373 352s BIR79 319.000 1606.000 3108.000 4848.231062 5386.000 30757.000 2373 352s SID79 0.000 3.000 6.000 9.574419 13.000 57.000 2373 352s NWBIR79 3.000 360.000 1058.000 1602.740769 1524.000 11631.000 2373 352s dimension(s): 352s from to offset delta refsys point x/y 352s x 1 100 -84.32 0.08867 NAD27 FALSE [x] 352s y 1 50 36.59 -0.05415 NAD27 FALSE [y] 352s > plot(x, axes = TRUE) 352s > (ls = st_sf(a = 1:2, st_sfc(st_linestring(rbind(c(0.1, 0), c(1.1, 1))), st_linestring(rbind(c(0, 0.05), c(1, 0.05)))))) 352s Simple feature collection with 2 features and 1 field 352s Geometry type: LINESTRING 352s Dimension: XY 352s Bounding box: xmin: 0 ymin: 0 xmax: 1.1 ymax: 1 352s CRS: NA 352s a 352s 1 1 352s 2 2 352s c..st_sfc.st_linestring.rbind.c.0.1..0...c.1.1..1.....st_linestring.rbind.c.0..........0.05...c.1..0.05...... 352s 1 LINESTRING (0.1 0, 1.1 1) 352s 2 LINESTRING (0 0.05, 1 0.05) 352s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = NA_real_)) 352s stars object with 2 dimensions and 1 attribute 352s attribute(s): 352s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 352s values NA NA NA NaN NA NA 100 352s dimension(s): 352s from to offset delta x/y 352s x 1 10 0 0.1 [x] 352s y 1 10 1 -0.1 [y] 352s > # the following two plots confirm that (only) the 352s > # upper-left corner is part of the grid cell (when dy is negative), leading 352s > # to a seemingly half-gridcell-shift problem: 352s > ## sf_extSoftVersion()["GDAL"] 352s > plot(st_rasterize(ls, grd), axes = TRUE, reset = FALSE) # ALL_TOUCHED=FALSE; 352s > plot(ls, add = TRUE, col = "red") 352s > plot(st_rasterize(ls, grd, options = "ALL_TOUCHED=TRUE"), axes = TRUE, reset = FALSE) 352s > plot(ls, add = TRUE, col = "red") 352s > # add lines to existing 0 values, summing values in case of multiple lines: 352s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = 0)) 352s stars object with 2 dimensions and 1 attribute 352s attribute(s): 352s Min. 1st Qu. Median Mean 3rd Qu. Max. 352s values 0 0 0 0 0 0 352s dimension(s): 352s from to offset delta x/y 352s x 1 10 0 0.1 [x] 352s y 1 10 1 -0.1 [y] 352s > r = st_rasterize(ls, grd, options = c("MERGE_ALG=ADD", "ALL_TOUCHED=TRUE")) 352s > plot(r, axes = TRUE, reset = FALSE) 352s > plot(ls, add = TRUE, col = "red") 352s > 352s BEGIN TEST rectilinear.R 352s 352s R version 4.3.2 (2023-10-31) -- "Eye Holes" 352s Copyright (C) 2023 The R Foundation for Statistical Computing 352s Platform: x86_64-pc-linux-gnu (64-bit) 352s 352s R is free software and comes with ABSOLUTELY NO WARRANTY. 352s You are welcome to redistribute it under certain conditions. 352s Type 'license()' or 'licence()' for distribution details. 352s 352s R is a collaborative project with many contributors. 352s Type 'contributors()' for more information and 352s 'citation()' on how to cite R or R packages in publications. 352s 352s Type 'demo()' for some demos, 'help()' for on-line help, or 352s 'help.start()' for an HTML browser interface to help. 352s Type 'q()' to quit R. 352s 352s > suppressPackageStartupMessages(library(stars)) 353s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 353s > x = read_stars(tif) 353s > (xx = x[,c(1:347,349),c(1:350,352),]) # rectilinear: one-but-last row & col missing 353s stars object with 3 dimensions and 1 attribute 353s attribute(s): 353s Min. 1st Qu. Median Mean 3rd Qu. Max. 353s L7_ETMs.tif 1 54 69 68.9915 86 255 353s dimension(s): 353s from to refsys point 353s x 1 348 SIRGAS 2000 / UTM zone 25S FALSE 353s y 1 351 SIRGAS 2000 / UTM zone 25S FALSE 353s band 1 6 NA NA 353s values x/y 353s x [288790.5,288819),...,[298708.5,298737) [x] 353s y [9120747,9120718),...,[9110743,9110715) [y] 353s band NULL 353s > image(xx) # chooses useRaster itself 353s > # see also tidy.R for a ggplot example, leaving out the row. 353s > 353s > m = matrix(1:16, 4, 4) 353s > x = 1:4 353s > y = 2:5 353s > (st = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 353s stars object with 2 dimensions and 1 attribute 353s attribute(s): 353s Min. 1st Qu. Median Mean 3rd Qu. Max. 353s m 1 4.75 8.5 8.5 12.25 16 353s dimension(s): 353s from to offset delta point x/y 353s x 1 4 1 1 FALSE [x] 353s y 1 4 2 1 FALSE [y] 353s > st = st_set_dimensions(st, 1, values = c(1,2,3,4,6)) 353s > st = st_set_dimensions(st, 2, values = c(2,3,4,5,8)) 353s > try(st_set_dimensions(st, 2, values = c(2,3,4,5,8,20))) # one too many 353s Error in st_set_dimensions(st, 2, values = c(2, 3, 4, 5, 8, 20)) : 353s length of values ( 6 ) does not match length of dimension > 353s > # $<-.stars: 353s > st$foo = st$m * 2 353s 2 ( 4 ) 353s > st 353s stars object with 2 dimensions and 2 attributes 353s attribute(s): 353s Min. 1st Qu. Median Mean 3rd Qu. Max. 353s m 1 4.75 8.5 8.5 12.25 16 353s foo 2 9.50 17.0 17.0 24.50 32 353s dimension(s): 353s from to point values x/y 353s x 1 4 FALSE [1,2),...,[4,6) [x] 353s y 1 4 FALSE [2,3),...,[5,8) [y] 353s > 353s > # st_as_sf: 353s > 353s > if (utils::packageVersion("sf") > "0.7.2") { 353s + plot(st_as_sf(st, as_points = FALSE), axes = TRUE) 353s + } 353s > 353s > image(st, text_values = TRUE, axes = TRUE) 353s > 353s BEGIN TEST redimension.R 353s 353s R version 4.3.2 (2023-10-31) -- "Eye Holes" 353s Copyright (C) 2023 The R Foundation for Statistical Computing 353s Platform: x86_64-pc-linux-gnu (64-bit) 353s 353s R is free software and comes with ABSOLUTELY NO WARRANTY. 353s You are welcome to redistribute it under certain conditions. 353s Type 'license()' or 'licence()' for distribution details. 353s 353s R is a collaborative project with many contributors. 353s Type 'contributors()' for more information and 353s 'citation()' on how to cite R or R packages in publications. 353s 353s Type 'demo()' for some demos, 'help()' for on-line help, or 353s 'help.start()' for an HTML browser interface to help. 353s Type 'q()' to quit R. 353s 353s > suppressPackageStartupMessages(library(stars)) 354s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 354s > r = read_stars(list(a = c(tif,tif), b = c(tif, tif)), proxy = TRUE) 354s > (xx = st_redimension(r, along = list(foo = 1:4))) 354s stars_proxy object with 1 attribute in 4 file(s): 354s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 354s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 354s [4] "[...]/L7_ETMs.tif" 354s 354s dimension(s): 354s from to offset delta refsys point x/y 354s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 354s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 354s band 1 6 NA NA NA NA 354s foo 1 4 1 1 NA NA 354s > (rr = c(xx, xx)) 354s stars_proxy object with 2 attributes in 8 file(s): 354s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 354s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 354s [4] "[...]/L7_ETMs.tif" 354s 354s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 354s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 354s [4] "[...]/L7_ETMs.tif" 354s 354s dimension(s): 354s from to offset delta refsys point x/y 354s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 354s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 354s band 1 6 NA NA NA NA 354s foo 1 4 1 1 NA NA 354s > # st_as_stars(rr) 354s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 354s stars_proxy object with 1 attribute in 8 file(s): 354s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif.a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 354s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 354s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 354s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 354s 354s dimension(s): 354s from to offset delta refsys point x/y 354s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 354s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 354s band 1 6 NA NA NA NA 354s foo 1 4 1 1 NA NA 354s bar 1 2 2001-01-01 365 days Date NA 354s > (rr = c(a = xx, b = xx)) 354s stars_proxy object with 2 attributes in 8 file(s): 354s $a 354s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 354s [4] "[...]/L7_ETMs.tif" 354s 354s $b 354s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 354s [4] "[...]/L7_ETMs.tif" 354s 354s dimension(s): 354s from to offset delta refsys point x/y 354s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 354s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 354s band 1 6 NA NA NA NA 354s foo 1 4 1 1 NA NA 354s > # st_as_stars(rr) 354s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 354s stars_proxy object with 1 attribute in 8 file(s): 354s $a.b 354s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 354s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 354s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 354s 354s dimension(s): 354s from to offset delta refsys point x/y 354s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 354s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 354s band 1 6 NA NA NA NA 354s foo 1 4 1 1 NA NA 354s bar 1 2 2001-01-01 365 days Date NA 354s > 354s BEGIN TEST sf.R 354s 354s R version 4.3.2 (2023-10-31) -- "Eye Holes" 354s Copyright (C) 2023 The R Foundation for Statistical Computing 354s Platform: x86_64-pc-linux-gnu (64-bit) 354s 354s R is free software and comes with ABSOLUTELY NO WARRANTY. 354s You are welcome to redistribute it under certain conditions. 354s Type 'license()' or 'licence()' for distribution details. 354s 354s R is a collaborative project with many contributors. 354s Type 'contributors()' for more information and 354s 'citation()' on how to cite R or R packages in publications. 354s 354s Type 'demo()' for some demos, 'help()' for on-line help, or 354s 'help.start()' for an HTML browser interface to help. 354s Type 'q()' to quit R. 354s 354s > suppressPackageStartupMessages(library(stars)) 355s > library(sf) 355s > #jp2 = system.file("jp2/B01.jp2", package = "stars") 355s > #(x = read_stars(jp2, options = c("OVERVIEW_LEVEL=3"))) 355s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 355s > #(x = read_stars(tif, options = c("OVERVIEW_LEVEL=3"))) # FIXME: breaks on windows 355s > (x = read_stars(tif)[,1:20,1:20]) 355s stars object with 3 dimensions and 1 attribute 355s attribute(s): 355s Min. 1st Qu. Median Mean 3rd Qu. Max. 355s L7_ETMs.tif 17 44 58 58.19667 70 130 355s dimension(s): 355s from to offset delta refsys point x/y 355s x 1 20 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 355s y 1 20 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 355s band 1 6 NA NA NA NA 355s > # names(x) = "L7_ETM" 355s > 355s > # library(abind) 355s > # x = adrop(x) 355s > image(x) 355s > (sfc = st_as_sfc(x, as_points = FALSE)) 355s Geometry set for 400 features 355s Geometry type: POLYGON 355s Dimension: XY 355s Bounding box: xmin: 288776.3 ymin: 9120191 xmax: 289346.3 ymax: 9120761 355s Projected CRS: SIRGAS 2000 / UTM zone 25S 355s First 5 geometries: 355s POLYGON ((288776.3 9120761, 288804.8 9120761, 2... 355s POLYGON ((288804.8 9120761, 288833.3 9120761, 2... 355s POLYGON ((288833.3 9120761, 288861.8 9120761, 2... 355s POLYGON ((288861.8 9120761, 288890.3 9120761, 2... 355s POLYGON ((288890.3 9120761, 288918.8 9120761, 2... 355s > plot(sfc, add =TRUE) 355s > (sfc = st_as_sfc(x, as_points = TRUE)) 355s Geometry set for 400 features 355s Geometry type: POINT 355s Dimension: XY 355s Bounding box: xmin: 288790.5 ymin: 9120205 xmax: 289332 ymax: 9120747 355s Projected CRS: SIRGAS 2000 / UTM zone 25S 355s First 5 geometries: 355s POINT (288790.5 9120747) 355s POINT (288819 9120747) 355s POINT (288847.5 9120747) 355s POINT (288876 9120747) 355s > plot(sfc, add = TRUE) 355s POINT (288904.5 9120747) 355s > 355s > sf = st_as_sf(x, as_points = FALSE) 355s > plot(sf, border = NA) 356s > sf = st_as_sf(x[,,,1], as_points = FALSE, merge = TRUE) 356s > plot(sf, border = NA) 356s > 356s > sfc1 <- st_as_sfc(x, as_points = TRUE, use_cpp = TRUE, na.rm = FALSE) 356s > sfc2 <- st_as_sfc(x, as_points = TRUE, use_cpp = FALSE) 356s > identical(sfc1, sfc2) 356s [1] TRUE 356s > 356s > sfc1 <- st_as_sfc(x, as_points = FALSE, use_cpp = TRUE, na.rm = FALSE) 356s > sfc2 <- st_as_sfc(x, as_points = FALSE, use_cpp = FALSE) 356s > identical(sfc1, sfc2) 356s [1] TRUE 356s > 356s > # sf -> stars -> sf 356s > x = st_sfc(st_point(0:1), st_point(1:2), st_point(2:3)) 356s > m = matrix(1:9,3) 356s > colnames(m) = c("a", "b", "c") 356s > foo = st_sf(m, geom = x) 356s > x = st_as_stars(foo) 356s > c(x) 356s stars object with 1 dimensions and 3 attributes 356s attribute(s): 356s Min. 1st Qu. Median Mean 3rd Qu. Max. 356s a 1 1.5 2 2 2.5 3 356s b 4 4.5 5 5 5.5 6 356s c 7 7.5 8 8 8.5 9 356s dimension(s): 356s from to point values 356s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 356s > st_redimension(x) 356s stars object with 2 dimensions and 1 attribute 356s attribute(s): 356s Min. 1st Qu. Median Mean 3rd Qu. Max. 356s a.b.c 1 3 5 5 7 9 356s dimension(s): 356s from to point values 356s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 356s new_dim 1 3 NA a, b, c 356s > c(x, x) 356s stars object with 1 dimensions and 6 attributes 356s attribute(s): 356s Min. 1st Qu. Median Mean 3rd Qu. Max. 356s a 1 1.5 2 2 2.5 3 356s b 4 4.5 5 5 5.5 6 356s c 7 7.5 8 8 8.5 9 356s a.1 1 1.5 2 2 2.5 3 356s b.1 4 4.5 5 5 5.5 6 356s c.1 7 7.5 8 8 8.5 9 356s dimension(s): 356s from to point values 356s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 356s > (y = st_redimension(x, along = list(time = as.Date("2017-11-27") + 0:2))) 356s stars object with 2 dimensions and 1 attribute 356s attribute(s): 356s Min. 1st Qu. Median Mean 3rd Qu. Max. 356s a.b.c 1 3 5 5 7 9 356s dimension(s): 356s from to offset delta refsys point values 356s geom 1 3 NA NA NA TRUE POINT (0 1),...,POINT (2 3) 356s time 1 3 2017-11-27 1 days Date NA NULL 356s > st_as_sf(y) 356s Simple feature collection with 3 features and 3 fields 356s Geometry type: POINT 356s Dimension: XY 356s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 356s CRS: NA 356s 2017-11-27 2017-11-28 2017-11-29 geom 356s 1 1 4 7 POINT (0 1) 356s 2 2 5 8 POINT (1 2) 356s 3 3 6 9 POINT (2 3) 356s > st_as_sf(st_as_stars(foo)) 356s Simple feature collection with 3 features and 3 fields 356s Geometry type: POINT 356s Dimension: XY 356s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 356s CRS: NA 356s a b c geom 356s 1 1 4 7 POINT (0 1) 356s 2 2 5 8 POINT (1 2) 356s 3 3 6 9 POINT (2 3) 356s > 356s > c(x,x,along=1) # NEEDS FIXING! 356s stars object with 1 dimensions and 3 attributes 356s attribute(s): 356s Min. 1st Qu. Median Mean 3rd Qu. Max. 356s a 1 1.25 2 2 2.75 3 356s b 4 4.25 5 5 5.75 6 356s c 7 7.25 8 8 8.75 9 356s dimension(s): 356s from to point values 356s geom 1 6 TRUE POINT (0 1),...,POINT (2 3) 356s > # st_as_stars.sfc 356s > st_as_stars(st_geometry(st_as_sf(y)), nx = 10, ny = 10, as_points = FALSE) 356s stars object with 2 dimensions and 1 attribute 356s attribute(s): 356s Min. 1st Qu. Median Mean 3rd Qu. Max. 356s values 0 0 0 0.06 0 1 356s dimension(s): 356s from to offset delta x/y 356s x 1 10 0 0.2 [x] 356s y 1 10 3 -0.2 [y] 356s > 356s BEGIN TEST sp.R 356s 356s R version 4.3.2 (2023-10-31) -- "Eye Holes" 356s Copyright (C) 2023 The R Foundation for Statistical Computing 356s Platform: x86_64-pc-linux-gnu (64-bit) 356s 356s R is free software and comes with ABSOLUTELY NO WARRANTY. 356s You are welcome to redistribute it under certain conditions. 356s Type 'license()' or 'licence()' for distribution details. 356s 356s R is a collaborative project with many contributors. 356s Type 'contributors()' for more information and 356s 'citation()' on how to cite R or R packages in publications. 356s 356s Type 'demo()' for some demos, 'help()' for on-line help, or 356s 'help.start()' for an HTML browser interface to help. 356s Type 'q()' to quit R. 356s 356s > options(rgdal_show_exportToProj4_warnings = "none") 356s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 356s + demo(meuse) 356s + # remove +init=xxx 356s + meuse@proj4string = CRS( 356s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 356s + ) 356s + meuse.grid@proj4string = CRS( 356s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 356s + ) 356s + 356s + suppressPackageStartupMessages(library(stars)) 356s + (m = st_as_stars(meuse)) 356s + (gr = st_as_stars(meuse.grid)) 356s + 356s + m2 = as(m, "Spatial") 356s + summary(m2) 356s + gr2 = as(gr, "Spatial") 356s + summary(gr2) 356s + 356s + all.equal(meuse, m2, check.attributes = FALSE) 356s + fullgrid(meuse.grid) = TRUE 356s + all.equal(meuse.grid, gr2, check.attributes = FALSE) 356s + 356s + #all.equal(meuse, m2) 356s + #all.equal(meuse.grid, gr2) 356s + } 356s 356s 356s demo(meuse) 356s ---- ~~~~~ 356s 356s > require(sp) 356s 356s > crs = CRS("EPSG:28992") 357s 357s > data("meuse") 357s 357s > coordinates(meuse) <- ~x+y 357s 357s > proj4string(meuse) <- crs 357s 357s > data("meuse.grid") 357s 357s > coordinates(meuse.grid) <- ~x+y 357s 357s > gridded(meuse.grid) <- TRUE 357s 357s > proj4string(meuse.grid) <- crs 357s 357s > data("meuse.riv") 357s 357s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 357s 357s > proj4string(meuse.riv) <- crs 357s 357s > data("meuse.area") 357s 357s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 357s 357s > proj4string(meuse.area) <- crs 357s [1] TRUE 357s > 357s BEGIN TEST spacetime.R 357s 357s R version 4.3.2 (2023-10-31) -- "Eye Holes" 357s Copyright (C) 2023 The R Foundation for Statistical Computing 357s Platform: x86_64-pc-linux-gnu (64-bit) 357s 357s R is free software and comes with ABSOLUTELY NO WARRANTY. 357s You are welcome to redistribute it under certain conditions. 357s Type 'license()' or 'licence()' for distribution details. 357s 357s R is a collaborative project with many contributors. 357s Type 'contributors()' for more information and 357s 'citation()' on how to cite R or R packages in publications. 357s 357s Type 'demo()' for some demos, 'help()' for on-line help, or 357s 'help.start()' for an HTML browser interface to help. 357s Type 'q()' to quit R. 357s 357s > suppressPackageStartupMessages(library(stars)) 358s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 358s + set.seed(1331) 358s + Sys.setenv(TZ="UTC") 358s + example(STFDF) 358s + 358s + x = st_as_stars(stfdf) 358s + xx = as(x, "STFDF") 358s + 358s + # as.xts.stars: 358s + library(xts) 358s + xts = as.xts(x) 358s + st_as_stars(xts) 358s + st_as_stars(xts, dimensions = st_dimensions(x)) 358s + 358s + library(sp) 358s + pts = SpatialPoints(rbind(c(0,0), c(0,1), c(1,0), c(1,1))) 358s + gridded(pts) = TRUE 358s + 358s + tm = xts(1:10, as.Date("2010-01-01")+0:9) 358s + stfdf = STFDF(pts, tm, data.frame(foo = seq_len(length(pts) * length(tm)))) 358s + x = st_as_stars(stfdf) 358s + xx = as(x, "STFDF") 358s + 358s + x = st_as_stars(as(stfdf, "STSDF")) 358s + } 358s 358s STFDF> sp = cbind(x = c(0,0,1), y = c(0,1,1)) 358s 358s STFDF> row.names(sp) = paste("point", 1:nrow(sp), sep="") 358s 358s STFDF> library(sp) 358s 358s STFDF> sp = SpatialPoints(sp) 358s 358s STFDF> time = as.POSIXct("2010-08-05")+3600*(10:13) 358s 358s STFDF> m = c(10,20,30) # means for each of the 3 point locations 358s 358s STFDF> mydata = rnorm(length(sp)*length(time),mean=rep(m, 4)) 358s 358s STFDF> IDs = paste("ID",1:length(mydata)) 358s 358s STFDF> mydata = data.frame(values = signif(mydata,3), ID=IDs) 358s 358s STFDF> stfdf = STFDF(sp, time, mydata) 358s 358s STFDF> stfdf 358s An object of class "STFDF" 358s Slot "data": 358s values ID 358s 1 9.38 ID 1 358s 2 21.10 ID 2 358s 3 29.80 ID 3 358s 4 11.50 ID 4 358s 5 19.80 ID 5 358s 6 31.20 ID 6 358s 7 10.40 ID 7 358s 8 20.50 ID 8 358s 9 29.80 ID 9 358s 10 10.30 ID 10 358s 11 21.40 ID 11 358s 12 29.40 ID 12 358s 358s Slot "sp": 358s SpatialPoints: 358s x y 358s point1 0 0 358s point2 0 1 358s point3 1 1 358s Coordinate Reference System (CRS) arguments: NA 358s 358s Slot "time": 358s timeIndex 358s 2010-08-05 10:00:00 1 358s 2010-08-05 11:00:00 2 358s 2010-08-05 12:00:00 3 358s 2010-08-05 13:00:00 4 358s 358s Slot "endTime": 358s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 358s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 358s 358s 358s STFDF> stfdf[1:2,] 358s An object of class "STFDF" 358s Slot "data": 358s values ID 358s 1 9.38 ID 1 358s 2 21.10 ID 2 358s 3 11.50 ID 4 358s 4 19.80 ID 5 358s 5 10.40 ID 7 358s 6 20.50 ID 8 358s 7 10.30 ID 10 358s 8 21.40 ID 11 358s 358s Slot "sp": 358s SpatialPoints: 358s x y 358s point1 0 0 358s point2 0 1 358s Coordinate Reference System (CRS) arguments: NA 358s 358s Slot "time": 358s timeIndex 358s 2010-08-05 10:00:00 1 358s 2010-08-05 11:00:00 2 358s 2010-08-05 12:00:00 3 358s 2010-08-05 13:00:00 4 358s 358s Slot "endTime": 358s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 358s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 358s 358s 358s STFDF> stfdf[,1:2] 358s An object of class "STFDF" 358s Slot "data": 358s values ID 358s 1 9.38 ID 1 358s 2 21.10 ID 2 358s 3 29.80 ID 3 358s 4 11.50 ID 4 358s 5 19.80 ID 5 358s 6 31.20 ID 6 358s 358s Slot "sp": 358s SpatialPoints: 358s x y 358s point1 0 0 358s point2 0 1 358s point3 1 1 358s Coordinate Reference System (CRS) arguments: NA 358s 358s Slot "time": 358s timeIndex 358s 2010-08-05 10:00:00 1 358s 2010-08-05 11:00:00 2 358s 358s Slot "endTime": 358s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 358s 358s 358s STFDF> stfdf[,,2] 358s An object of class "STFDF" 358s Slot "data": 358s ID 358s 1 ID 1 358s 2 ID 2 358s 3 ID 3 358s 4 ID 4 358s 5 ID 5 358s 6 ID 6 358s 7 ID 7 358s 8 ID 8 358s 9 ID 9 358s 10 ID 10 358s 11 ID 11 358s 12 ID 12 358s 358s Slot "sp": 358s SpatialPoints: 358s x y 358s point1 0 0 358s point2 0 1 358s point3 1 1 358s Coordinate Reference System (CRS) arguments: NA 358s 358s Slot "time": 358s timeIndex 358s 2010-08-05 10:00:00 1 358s 2010-08-05 11:00:00 2 358s 2010-08-05 12:00:00 3 358s 2010-08-05 13:00:00 4 358s 358s Slot "endTime": 358s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 358s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 358s 358s 358s STFDF> stfdf[,,"values"] 358s An object of class "STFDF" 358s Slot "data": 358s values 358s 1 9.38 358s 2 21.10 358s 3 29.80 358s 4 11.50 358s 5 19.80 358s 6 31.20 358s 7 10.40 358s 8 20.50 358s 9 29.80 358s 10 10.30 358s 11 21.40 358s 12 29.40 358s 358s Slot "sp": 358s SpatialPoints: 358s x y 358s point1 0 0 358s point2 0 1 358s point3 1 1 358s Coordinate Reference System (CRS) arguments: NA 358s 358s Slot "time": 358s timeIndex 358s 2010-08-05 10:00:00 1 358s 2010-08-05 11:00:00 2 358s 2010-08-05 12:00:00 3 358s 2010-08-05 13:00:00 4 358s 358s Slot "endTime": 358s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 358s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 358s 358s 358s STFDF> stfdf[1,] 358s values ID timeIndex 358s 2010-08-05 10:00:00 9.38 ID 1 1 358s 2010-08-05 11:00:00 11.50 ID 4 2 358s 2010-08-05 12:00:00 10.40 ID 7 3 358s 2010-08-05 13:00:00 10.30 ID 10 4 358s 358s STFDF> stfdf[,2] 358s coordinates values ID 358s 1 (0, 0) 11.5 ID 4 358s 2 (0, 1) 19.8 ID 5 358s 3 (1, 1) 31.2 ID 6 358s 358s STFDF> as(stfdf[,,1], "xts") 359s point1 point2 point3 359s 2010-08-05 10:00:00 9.38 21.1 29.8 359s 2010-08-05 11:00:00 11.50 19.8 31.2 359s 2010-08-05 12:00:00 10.40 20.5 29.8 359s 2010-08-05 13:00:00 10.30 21.4 29.4 359s 359s STFDF> as(stfdf[,,2], "xts") 359s point1 point2 point3 359s 2010-08-05 10:00:00 ID 1 ID 2 ID 3 359s 2010-08-05 11:00:00 ID 4 ID 5 ID 6 359s 2010-08-05 12:00:00 ID 7 ID 8 ID 9 359s 2010-08-05 13:00:00 ID 10 ID 11 ID 12 359s 359s STFDF> # examples for [[, [[<-, $ and $<- 359s STFDF> stfdf[[1]] 359s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 359s 359s STFDF> stfdf[["values"]] 359s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 359s 359s STFDF> stfdf[["newVal"]] <- rnorm(12) 359s 359s STFDF> stfdf$ID 359s [1] "ID 1" "ID 2" "ID 3" "ID 4" "ID 5" "ID 6" "ID 7" "ID 8" "ID 9" 359s [10] "ID 10" "ID 11" "ID 12" 359s 359s STFDF> stfdf$ID = paste("OldIDs", 1:12, sep="") 359s 359s STFDF> stfdf$NewID = paste("NewIDs", 12:1, sep="") 359s 359s STFDF> stfdf 359s An object of class "STFDF" 359s Slot "data": 359s values ID newVal NewID 359s 1 9.38 OldIDs1 -0.3125824 NewIDs12 359s 2 21.10 OldIDs2 -1.0536246 NewIDs11 359s 3 29.80 OldIDs3 -0.7188880 NewIDs10 359s 4 11.50 OldIDs4 -1.0525404 NewIDs9 359s 5 19.80 OldIDs5 -0.8441413 NewIDs8 359s 6 31.20 OldIDs6 1.1420848 NewIDs7 359s 7 10.40 OldIDs7 1.9479070 NewIDs6 359s 8 20.50 OldIDs8 -0.4512836 NewIDs5 359s 9 29.80 OldIDs9 0.6695716 NewIDs4 359s 10 10.30 OldIDs10 0.1269003 NewIDs3 359s 11 21.40 OldIDs11 -0.7273297 NewIDs2 359s 12 29.40 OldIDs12 -0.8151803 NewIDs1 359s 359s Slot "sp": 359s SpatialPoints: 359s x y 359s point1 0 0 359s point2 0 1 359s point3 1 1 359s Coordinate Reference System (CRS) arguments: NA 359s 359s Slot "time": 359s timeIndex 359s 2010-08-05 10:00:00 1 359s 2010-08-05 11:00:00 2 359s 2010-08-05 12:00:00 3 359s 2010-08-05 13:00:00 4 359s 359s Slot "endTime": 359s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 359s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 359s 359s 359s STFDF> x = stfdf[stfdf[1:2,],] 359s 359s STFDF> all.equal(x, stfdf[1:2,]) 359s [1] TRUE 359s 359s STFDF> all.equal(stfdf, stfdf[stfdf,]) # converts character to factor... 359s [1] TRUE 359s Loading required package: zoo 359s 359s Attaching package: 'zoo' 359s 359s The following objects are masked from 'package:base': 359s 359s as.Date, as.Date.numeric 359s 359s only the first attribute will used; maybe use merge() first? 359s > 359s BEGIN TEST spatstat.R 359s 359s R version 4.3.2 (2023-10-31) -- "Eye Holes" 359s Copyright (C) 2023 The R Foundation for Statistical Computing 359s Platform: x86_64-pc-linux-gnu (64-bit) 359s 359s R is free software and comes with ABSOLUTELY NO WARRANTY. 359s You are welcome to redistribute it under certain conditions. 359s Type 'license()' or 'licence()' for distribution details. 359s 359s R is a collaborative project with many contributors. 359s Type 'contributors()' for more information and 359s 'citation()' on how to cite R or R packages in publications. 359s 359s Type 'demo()' for some demos, 'help()' for on-line help, or 359s 'help.start()' for an HTML browser interface to help. 359s Type 'q()' to quit R. 359s 359s > suppressPackageStartupMessages(library(sf)) 360s > 360s > library(stars) 360s Loading required package: abind 360s > if (suppressPackageStartupMessages(require(spatstat.geom, quietly = TRUE))) { 360s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 360s + s = adrop(read_stars(tif)[,,,1]) > 70 360s + plot(s) 360s + m = as.owin(s) 360s + plot(m) 360s + print(table(m$m)) 360s + } 361s 361s FALSE TRUE 361s 39494 83354 361s > 361s BEGIN TEST stars.R 361s 361s R version 4.3.2 (2023-10-31) -- "Eye Holes" 361s Copyright (C) 2023 The R Foundation for Statistical Computing 361s Platform: x86_64-pc-linux-gnu (64-bit) 361s 361s R is free software and comes with ABSOLUTELY NO WARRANTY. 361s You are welcome to redistribute it under certain conditions. 361s Type 'license()' or 'licence()' for distribution details. 361s 361s R is a collaborative project with many contributors. 361s Type 'contributors()' for more information and 361s 'citation()' on how to cite R or R packages in publications. 361s 361s Type 'demo()' for some demos, 'help()' for on-line help, or 361s 'help.start()' for an HTML browser interface to help. 361s Type 'q()' to quit R. 361s 361s > Sys.setenv(TZ="UTC") 361s > suppressPackageStartupMessages(library(stars)) 362s > set.seed(13521) # runif 362s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 362s > (x_ = read_stars(c(tif,tif))) # FIXME: not what you'd expect 362s stars object with 3 dimensions and 2 attributes 362s attribute(s): 362s Min. 1st Qu. Median Mean 3rd Qu. Max. 362s L7_ETMs.tif 1 54 69 68.91242 86 255 362s L7_ETMs.tif.1 1 54 69 68.91242 86 255 362s dimension(s): 362s from to offset delta refsys point x/y 362s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 362s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 362s band 1 6 NA NA NA NA 362s > (x = read_stars(tif)) 362s stars object with 3 dimensions and 1 attribute 362s attribute(s): 362s Min. 1st Qu. Median Mean 3rd Qu. Max. 362s L7_ETMs.tif 1 54 69 68.91242 86 255 362s dimension(s): 362s from to offset delta refsys point x/y 362s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 362s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 362s band 1 6 NA NA NA NA 362s > # image(x) 362s > gdal_crs(tif) 362s Coordinate Reference System: 362s User input: PROJCS["SIRGAS 2000 / UTM zone 25S",GEOGCS["SIRGAS 2000",DATUM["Sistema_de_Referencia_Geocentrico_para_las_AmericaS_2000",SPHEROID["GRS 1980",6378137,298.257222101,AUTHORITY["EPSG","7019"]],AUTHORITY["EPSG","6674"]],PRIMEM["Greenwich",0,AUTHORITY["EPSG","8901"]],UNIT["degree",0.0174532925199433,AUTHORITY["EPSG","9122"]],AUTHORITY["EPSG","4674"]],PROJECTION["Transverse_Mercator"],PARAMETER["latitude_of_origin",0],PARAMETER["central_meridian",-33],PARAMETER["scale_factor",0.9996],PARAMETER["false_easting",500000],PARAMETER["false_northing",10000000],UNIT["metre",1,AUTHORITY["EPSG","9001"]],AXIS["Easting",EAST],AXIS["Northing",NORTH],AUTHORITY["EPSG","31985"]] 362s wkt: 362s PROJCRS["SIRGAS 2000 / UTM zone 25S", 362s BASEGEOGCRS["SIRGAS 2000", 362s DATUM["Sistema de Referencia Geocentrico para las AmericaS 2000", 362s ELLIPSOID["GRS 1980",6378137,298.257222101, 362s LENGTHUNIT["metre",1]]], 362s PRIMEM["Greenwich",0, 362s ANGLEUNIT["degree",0.0174532925199433]], 362s ID["EPSG",4674]], 362s CONVERSION["UTM zone 25S", 362s METHOD["Transverse Mercator", 362s ID["EPSG",9807]], 362s PARAMETER["Latitude of natural origin",0, 362s ANGLEUNIT["degree",0.0174532925199433], 362s ID["EPSG",8801]], 362s PARAMETER["Longitude of natural origin",-33, 362s ANGLEUNIT["degree",0.0174532925199433], 362s ID["EPSG",8802]], 362s PARAMETER["Scale factor at natural origin",0.9996, 362s SCALEUNIT["unity",1], 362s ID["EPSG",8805]], 362s PARAMETER["False easting",500000, 362s LENGTHUNIT["metre",1], 362s ID["EPSG",8806]], 362s PARAMETER["False northing",10000000, 362s LENGTHUNIT["metre",1], 362s ID["EPSG",8807]]], 362s CS[Cartesian,2], 362s AXIS["easting",east, 362s ORDER[1], 362s LENGTHUNIT["metre",1]], 362s AXIS["northing",north, 362s ORDER[2], 362s LENGTHUNIT["metre",1]], 362s ID["EPSG",31985]] 362s > plot(x) 363s > plot(x, join_zlim = FALSE) 363s > x %>% st_set_dimensions(names = c('a', 'b', 'c')) 363s stars object with 3 dimensions and 1 attribute 363s attribute(s): 363s Min. 1st Qu. Median Mean 3rd Qu. Max. 363s L7_ETMs.tif 1 54 69 68.91242 86 255 363s dimension(s): 363s from to offset delta refsys point x/y 363s a 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 363s b 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 363s c 1 6 NA NA NA NA 363s > st_get_dimension_values(x, 3) 363s [1] 1 2 3 4 5 6 363s > 363s > (x1 = st_set_dimensions(x, "band", values = c(1,2,3,4,5,7), names = "band_number", point = TRUE)) 363s stars object with 3 dimensions and 1 attribute 363s attribute(s): 363s Min. 1st Qu. Median Mean 3rd Qu. Max. 363s L7_ETMs.tif 1 54 69 68.91242 86 255 363s dimension(s): 363s from to offset delta refsys point values x/y 363s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 363s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 363s band_number 1 6 NA NA NA TRUE 1,...,7 363s > rbind(c(0.45,0.515), c(0.525,0.605), c(0.63,0.69), c(0.775,0.90), c(1.55,1.75), c(2.08,2.35)) %>% 363s + units::set_units(um) -> bw # units::set_units(µm) -> bw 363s > # set bandwidth midpoint: 363s > (x2 = st_set_dimensions(x, "band", values = 0.5 * (bw[,1]+bw[,2]), 363s + names = "bandwidth_midpoint", point = TRUE)) 363s stars object with 3 dimensions and 1 attribute 363s attribute(s): 363s Min. 1st Qu. Median Mean 3rd Qu. Max. 363s L7_ETMs.tif 1 54 69 68.91242 86 255 363s dimension(s): 363s from to offset delta refsys point 363s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 363s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 363s bandwidth_midpoint 1 6 NA NA udunits TRUE 363s values x/y 363s x NULL [x] 363s y NULL [y] 363s bandwidth_midpoint 0.4825 [um],...,2.215 [um] 363s > # set bandwidth intervals: 363s > (x3 = st_set_dimensions(x, "band", values = make_intervals(bw), names = "bandwidth")) 363s stars object with 3 dimensions and 1 attribute 363s attribute(s): 363s Min. 1st Qu. Median Mean 3rd Qu. Max. 363s L7_ETMs.tif 1 54 69 68.91242 86 255 363s dimension(s): 363s from to offset delta refsys point 363s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 363s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 363s bandwidth 1 6 NA NA udunits NA 363s values x/y 363s x NULL [x] 363s y NULL [y] 363s bandwidth [0.45,0.515) [um],...,[2.08,2.35) [um] 363s > 363s > x + x 363s stars object with 3 dimensions and 1 attribute 363s attribute(s): 363s Min. 1st Qu. Median Mean 3rd Qu. Max. 363s L7_ETMs.tif 2 108 138 137.8248 172 510 363s dimension(s): 363s from to offset delta refsys point x/y 363s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 363s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 363s band 1 6 NA NA NA NA 363s > x * x 363s stars object with 3 dimensions and 1 attribute 363s attribute(s): 363s Min. 1st Qu. Median Mean 3rd Qu. Max. 363s L7_ETMs.tif 1 2916 4761 5512.41 7396 65025 363s dimension(s): 363s from to offset delta refsys point x/y 363s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 363s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 363s band 1 6 NA NA NA NA 363s > x[,,,1:3] 363s stars object with 3 dimensions and 1 attribute 363s attribute(s): 363s Min. 1st Qu. Median Mean 3rd Qu. Max. 363s L7_ETMs.tif 21 58 70 70.36041 83 255 363s dimension(s): 364s from to offset delta refsys point x/y 364s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 364s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 364s band 1 3 NA NA NA NA 364s > x[,1:100,100:200,] 364s stars object with 3 dimensions and 1 attribute 364s attribute(s): 364s Min. 1st Qu. Median Mean 3rd Qu. Max. 364s L7_ETMs.tif 13 54 65 67.21531 77 252 364s dimension(s): 364s from to offset delta refsys point x/y 364s x 1 100 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 364s y 100 200 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 364s band 1 6 NA NA NA NA 364s > sqrt(x) 364s stars object with 3 dimensions and 1 attribute 364s attribute(s): 364s Min. 1st Qu. Median Mean 3rd Qu. Max. 364s L7_ETMs.tif 1 7.348469 8.306624 8.094006 9.273618 15.96872 364s dimension(s): 364s from to offset delta refsys point x/y 364s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 364s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 364s band 1 6 NA NA NA NA 364s > st_apply(x, 3, min) 364s stars object with 1 dimensions and 1 attribute 364s attribute(s): 364s Min. 1st Qu. Median Mean 3rd Qu. Max. 364s min 1 3 15 18.5 29.25 47 364s dimension(s): 364s from to 364s band 1 6 364s > st_apply(x, 1:2, max) 364s stars object with 2 dimensions and 1 attribute 364s attribute(s): 364s Min. 1st Qu. Median Mean 3rd Qu. Max. 364s max 55 85 96 99.36018 113 255 364s dimension(s): 364s from to offset delta refsys point x/y 364s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 364s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 364s > st_apply(x, 1:2, range) 364s stars object with 3 dimensions and 1 attribute 364s attribute(s): 364s Min. 1st Qu. Median Mean 3rd Qu. Max. 364s L7_ETMs.tif 1 50 71 72.43565 96 255 364s dimension(s): 364s from to offset delta refsys point x/y 364s range 1 2 NA NA NA NA 364s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 364s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 364s > 364s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 364s > x = read_stars(geomatrix) 364s > y = st_transform(x, st_crs(4326)) 364s > st_coordinates(x)[1:10,] 364s x y 364s 1 1841000 1144000 364s 2 1841002 1143995 364s 3 1841003 1143990 364s 4 1841004 1143985 364s 5 1841006 1143980 364s 6 1841008 1143975 364s 7 1841009 1143970 364s 8 1841010 1143965 364s 9 1841012 1143960 364s 10 1841014 1143955 364s > 364s > nc = system.file("nc/tos_O1_2001-2002.nc", package = "stars") 364s > if (nc != "" && require(PCICt, quietly = TRUE)) { 364s + print(x <- read_stars(nc)) 364s + print(st_bbox(x)) 364s + s = st_as_stars(st_bbox(x)) # inside = NA 364s + print(st_bbox(s)) 364s + s = st_as_stars(st_bbox(x), inside = TRUE) 364s + print(st_bbox(s)) 364s + s = st_as_stars(st_bbox(x), inside = FALSE) 364s + print(st_bbox(s)) 364s + (s = st_as_stars(st_bbox(x), dy = 1)) 364s + print(st_bbox(s)) 364s + print(identical(st_as_stars(st_bbox(x), dx = 1), st_as_stars(st_bbox(x), dy = 1))) 364s + s = st_as_stars(st_bbox(x), dx = 10) 364s + print(st_bbox(s)) 364s + s = st_as_stars(st_bbox(x), dx = 20) 364s + print(st_bbox(s)) 364s + x1 = x 364s + st_crs(x1) = "OGC:CRS84" 364s + print(identical(st_as_stars(st_bbox(x1), dx = 1), st_as_stars(st_bbox(x1), dx = units::set_units(1, degree)))) 364s + 364s + df = as.data.frame(x) 364s + if (require(units, quietly = TRUE)) 364s + print(units::drop_units(x)) 364s + 364s + print(dimnames(x)) 364s + dimnames(x) <- letters[1:3] 364s + print(dimnames(x)) 364s + } # PCICt 364s > 364s > st_as_stars() 364s stars object with 2 dimensions and 1 attribute 364s attribute(s): 364s Min. 1st Qu. Median Mean 3rd Qu. Max. 364s values 0 0 0 0 0 0 364s dimension(s): 364s from to offset delta refsys x/y 364s x 1 360 -180 1 WGS 84 (CRS84) [x] 364s y 1 180 90 -1 WGS 84 (CRS84) [y] 364s > 364s > # multiple sub-datasets: 364s > nc_red = system.file("nc/reduced.nc", package = "stars") 364s > red = read_stars(nc_red) 364s sst, anom, err, ice, 364s > red 364s stars object with 4 dimensions and 4 attributes 364s attribute(s): 364s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 364s sst [degree_Celsius] -1.80 -0.03 13.655 12.9940841 24.8125 32.97 4448 364s anom [degree_Celsius] -10.16 -0.58 -0.080 -0.1855812 0.2100 2.99 4448 364s err [degree_Celsius] 0.11 0.16 0.270 0.2626872 0.3200 0.84 4448 364s ice [percent] 0.01 0.47 0.920 0.7178118 0.9600 1.00 13266 364s dimension(s): 364s from to offset delta refsys x/y 364s x 1 180 -1 2 NA [x] 364s y 1 90 90 -2 NA [y] 364s zlev 1 1 0 [m] NA NA 364s time 1 1 1981-12-31 UTC NA POSIXct 364s > plot(red) 365s > 365s > x = st_xy2sfc(read_stars(tif)[,1:10,1:10,], as_points = FALSE) 365s > st_bbox(x) 365s xmin ymin xmax ymax 365s 288776.3 9120475.8 289061.3 9120760.8 365s > x = read_stars(tif) 365s > merge(split(x, "band")) 365s stars object with 3 dimensions and 1 attribute 365s attribute(s): 365s Min. 1st Qu. Median Mean 3rd Qu. Max. 365s X1.X2.X3.X4.X5.X6 1 54 69 68.91242 86 255 365s dimension(s): 365s from to offset delta refsys point values 365s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 365s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 365s attributes 1 6 NA NA NA NA X1,...,X6 365s x/y 365s x [x] 365s y [y] 365s attributes 365s > 365s > read_stars(c(tif,tif)) # merges as attributes 365s stars object with 3 dimensions and 2 attributes 365s attribute(s): 365s Min. 1st Qu. Median Mean 3rd Qu. Max. 365s L7_ETMs.tif 1 54 69 68.91242 86 255 365s L7_ETMs.tif.1 1 54 69 68.91242 86 255 365s dimension(s): 365s from to offset delta refsys point x/y 365s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 365s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 365s band 1 6 NA NA NA NA 365s > read_stars(c(tif,tif), along = "sensor") 366s stars object with 4 dimensions and 1 attribute 366s attribute(s), summary of first 1e+05 cells: 366s Min. 1st Qu. Median Mean 3rd Qu. Max. 366s L7_ETMs.tif 47 65 76 77.3419 87 255 366s dimension(s): 366s from to offset delta refsys point x/y 366s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 366s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 366s band 1 6 NA NA NA NA 366s sensor 1 2 NA NA NA NA 366s > read_stars(c(tif,tif), along = 4) 366s stars object with 4 dimensions and 1 attribute 366s attribute(s), summary of first 1e+05 cells: 366s Min. 1st Qu. Median Mean 3rd Qu. Max. 366s L7_ETMs.tif 47 65 76 77.3419 87 255 366s dimension(s): 366s from to offset delta refsys point x/y 366s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 366s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 366s band 1 6 NA NA NA NA 366s new_dim 1 2 NA NA NA NA 366s > read_stars(c(tif,tif), along = "band") 366s stars object with 3 dimensions and 1 attribute 366s attribute(s), summary of first 1e+05 cells: 366s Min. 1st Qu. Median Mean 3rd Qu. Max. 366s L7_ETMs.tif 47 65 76 77.3419 87 255 366s dimension(s): 366s from to offset delta refsys point x/y 366s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 366s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 366s band 1 12 NA NA NA NA 366s > read_stars(c(tif,tif), along = 3) 366s stars object with 3 dimensions and 1 attribute 366s attribute(s), summary of first 1e+05 cells: 366s Min. 1st Qu. Median Mean 3rd Qu. Max. 366s L7_ETMs.tif 47 65 76 77.3419 87 255 366s dimension(s): 366s from to offset delta refsys point x/y 366s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 366s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 366s band 1 12 NA NA NA NA 366s > 366s > # cut: 366s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 366s > x = read_stars(tif) 366s > cut(x, c(0, 50, 100, 255)) 366s stars object with 3 dimensions and 1 attribute 366s attribute(s): 366s L7_ETMs.tif 366s (0,50] :156060 366s (50,100] :503764 366s (100,255]: 77264 366s dimension(s): 366s from to offset delta refsys point x/y 366s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 366s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 366s band 1 6 NA NA NA NA 366s > cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255)) 366s stars object with 2 dimensions and 1 attribute 366s attribute(s): 366s L7_ETMs.tif 366s (0,50] : 1 366s (50,100] :117134 366s (100,255]: 5713 366s dimension(s): 366s from to offset delta refsys point x/y 366s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 366s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 366s > plot(cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255))) 366s > 366s > st_bbox(st_dimensions(x)) 366s xmin ymin xmax ymax 366s 288776.3 9110728.8 298722.8 9120760.8 366s > x[x < 0] = NA 366s > x[is.na(x)] = 0 366s > 366s > # c: 366s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 366s > if (FALSE && f != "") { 366s + files = c("avhrr-only-v2.19810901.nc", 366s + "avhrr-only-v2.19810902.nc", 366s + "avhrr-only-v2.19810903.nc", 366s + "avhrr-only-v2.19810904.nc", 366s + "avhrr-only-v2.19810905.nc", 366s + "avhrr-only-v2.19810906.nc", 366s + "avhrr-only-v2.19810907.nc", 366s + "avhrr-only-v2.19810908.nc", 366s + "avhrr-only-v2.19810909.nc") 366s + l = list() 366s + for (f in files) { 366s + from = system.file(paste0("netcdf/", f), package = "starsdata") 366s + l[[f]] = read_stars(from, sub = c("sst", "anom")) 366s + } 366s + ret = do.call(c, l) 366s + print(ret) 366s + ret = adrop(c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 366s + print(ret) 366s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 366s + #print(ret) 366s + } 366s > 366s > st_dimensions(list(matrix(1, 4, 4))) # st_dimensions.default 366s from to point values 366s X1 1 1 FALSE 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 366s > 366s > if (FALSE && require("starsdata", quietly = TRUE)) { 366s + # curvilinear: 366s + s5p = system.file( 366s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 366s + package = "starsdata") 366s + print(s5p) 366s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 366s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 366s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 366s + lat = read_stars(lat_ds) 366s + lon = read_stars(lon_ds) 366s + nit = read_stars(nit_ds) 366s + nit[[1]][nit[[1]] > 9e+36] = NA 366s + 366s + ll = setNames(c(lon, lat), c("x", "y")) 366s + nit.c = st_as_stars(nit, curvilinear = ll) 366s + print(nit.c) 366s + 366s + s5p = system.file( 366s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 366s + package = "starsdata") 366s + nit.c2 = read_stars(s5p, 366s + sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 366s + curvilinear = c("//PRODUCT/latitude", "//PRODUCT/longitude")) 366s + print(all.equal(nit.c, nit.c2)) 366s + } 366s > 366s BEGIN TEST subset.R 366s 366s R version 4.3.2 (2023-10-31) -- "Eye Holes" 366s Copyright (C) 2023 The R Foundation for Statistical Computing 366s Platform: x86_64-pc-linux-gnu (64-bit) 366s 366s R is free software and comes with ABSOLUTELY NO WARRANTY. 366s You are welcome to redistribute it under certain conditions. 366s Type 'license()' or 'licence()' for distribution details. 366s 366s R is a collaborative project with many contributors. 366s Type 'contributors()' for more information and 366s 'citation()' on how to cite R or R packages in publications. 366s 366s Type 'demo()' for some demos, 'help()' for on-line help, or 366s 'help.start()' for an HTML browser interface to help. 366s Type 'q()' to quit R. 366s 366s > suppressPackageStartupMessages(library(stars)) 367s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 367s > x = read_stars(tif) 367s > y = st_set_dimensions(x, "band", point = TRUE) 367s > y[,1:10, 1:10, c(1,4,3,2)] 367s stars object with 3 dimensions and 1 attribute 367s attribute(s): 367s Min. 1st Qu. Median Mean 3rd Qu. Max. 367s L7_ETMs.tif 25 45 57 56.535 64 97 367s dimension(s): 367s from to offset delta refsys point values x/y 367s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 367s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 367s band 1 4 NA NA NA TRUE 1,...,2 367s > y = st_set_dimensions(x, "band", point = NA) 367s > y[,1:10, 1:10, c(1,4,3,2)] 367s stars object with 3 dimensions and 1 attribute 367s attribute(s): 367s Min. 1st Qu. Median Mean 3rd Qu. Max. 367s L7_ETMs.tif 25 45 57 56.535 64 97 367s dimension(s): 367s from to offset delta refsys point values x/y 367s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 367s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 367s band 1 4 NA NA NA NA [1,2),...,[2,3) 367s > y = st_set_dimensions(x, "band", point = FALSE) 367s > y[,1:10, 1:10, c(1,4,3,2)] 367s stars object with 3 dimensions and 1 attribute 367s attribute(s): 367s Min. 1st Qu. Median Mean 3rd Qu. Max. 367s L7_ETMs.tif 25 45 57 56.535 64 97 367s dimension(s): 367s from to offset delta refsys point values x/y 367s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 367s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 367s band 1 4 NA NA NA FALSE [1,2),...,[2,3) 367s > y = st_set_dimensions(x, "band", values = letters[1:6]) 367s > y[,1:10, 1:10, c(1,4,3,2)] 367s stars object with 3 dimensions and 1 attribute 367s attribute(s): 367s Min. 1st Qu. Median Mean 3rd Qu. Max. 367s L7_ETMs.tif 25 45 57 56.535 64 97 367s dimension(s): 367s from to offset delta refsys point values x/y 367s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 367s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 367s band 1 4 NA NA NA NA a,...,b 367s > y = st_set_dimensions(x, "band", values = letters[1:6], point = NA) 367s > y[,1:10, 1:10, c(1,4,3,2)] 367s stars object with 3 dimensions and 1 attribute 367s attribute(s): 367s Min. 1st Qu. Median Mean 3rd Qu. Max. 367s L7_ETMs.tif 25 45 57 56.535 64 97 367s dimension(s): 367s from to offset delta refsys point values x/y 367s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 367s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 367s band 1 4 NA NA NA NA a,...,b 367s > y = st_set_dimensions(x, "band", values = letters[1:6], point = TRUE) 367s > y[,1:10, 1:10, c(1,4,3,2)] 367s stars object with 3 dimensions and 1 attribute 367s attribute(s): 367s Min. 1st Qu. Median Mean 3rd Qu. Max. 367s L7_ETMs.tif 25 45 57 56.535 64 97 367s dimension(s): 367s from to offset delta refsys point values x/y 367s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 367s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 367s band 1 4 NA NA NA TRUE a,...,b 367s > 367s BEGIN TEST testthat.R 367s 367s R version 4.3.2 (2023-10-31) -- "Eye Holes" 367s Copyright (C) 2023 The R Foundation for Statistical Computing 367s Platform: x86_64-pc-linux-gnu (64-bit) 367s 367s R is free software and comes with ABSOLUTELY NO WARRANTY. 367s You are welcome to redistribute it under certain conditions. 367s Type 'license()' or 'licence()' for distribution details. 367s 367s R is a collaborative project with many contributors. 367s Type 'contributors()' for more information and 367s 'citation()' on how to cite R or R packages in publications. 367s 367s Type 'demo()' for some demos, 'help()' for on-line help, or 367s 'help.start()' for an HTML browser interface to help. 367s Type 'q()' to quit R. 367s 368s > ## load dependencies 368s > library(testthat) 368s > suppressPackageStartupMessages(library(stars)) 368s > 368s > ## test package 368s > test_check("stars") 374s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 374s 374s == Skipped tests (5) =========================================================== 374s * On CRAN (4): 'test_ncdf.R:1:1', 'test_ncproxy.R:1:1', 'test_osm.R:4:3', 374s 'test_rectilinear.R:89:3' 374s * cubble cannot be loaded (1): 'test_cubble.R:2:3' 374s 374s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 374s > 374s BEGIN TEST tidy.R 374s 374s R version 4.3.2 (2023-10-31) -- "Eye Holes" 374s Copyright (C) 2023 The R Foundation for Statistical Computing 374s Platform: x86_64-pc-linux-gnu (64-bit) 374s 374s R is free software and comes with ABSOLUTELY NO WARRANTY. 374s You are welcome to redistribute it under certain conditions. 374s Type 'license()' or 'licence()' for distribution details. 374s 374s R is a collaborative project with many contributors. 374s Type 'contributors()' for more information and 374s 'citation()' on how to cite R or R packages in publications. 374s 374s Type 'demo()' for some demos, 'help()' for on-line help, or 374s 'help.start()' for an HTML browser interface to help. 374s Type 'q()' to quit R. 374s 374s > suppressPackageStartupMessages(library(stars)) 375s > 375s > if (require(dplyr, quietly = TRUE)) { 375s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 375s + x <- read_stars(tif) 375s + (y <- x %>% select(L7_ETMs.tif)) 375s + (y <- x %>% filter(band > 2)) 375s + (z <- x %>% mutate(foo = 2* L7_ETMs.tif)) 375s + x %>% pull(L7_ETMs.tif) %>% class() 375s + x %>% filter(x > 289900) 375s + x %>% slice("x", 50:100) 375s + 375s + suppressPackageStartupMessages(library(ggplot2)) 375s + ggplot() + geom_stars(data = x) + coord_equal() + facet_wrap(~band) 375s + ggplot() + geom_stars(data = x[,c(1:50,52:100),c(1:45, 50:60)]) + 375s + coord_equal() 375s + ggplot() + geom_stars(data = x[,1:10,1:10,1:2], sf = TRUE) + facet_wrap(~band) 375s + 375s + 375s + # see https://github.com/r-spatial/stars/issues/539 : 375s + x <- read_stars(system.file("tif/L7_ETMs.tif", package = "stars")) 375s + y <- transmute(x, L7_ETMs.tif = units::set_units(L7_ETMs.tif, degree_C)) # same as x but with units 375s + 375s + x - slice(x, 'band', 1) # runs as expected, recycling the second object 375s + try(y - slice(x, 'band', 1)) # fails as expected because x is unitless 375s + try(x - slice(y, 'band', 1)) # fails as expected 375s + y - slice(y, 'band', 1) # runs as expected 375s + } 375s 375s Attaching package: 'dplyr' 375s 375s The following objects are masked from 'package:stats': 375s 375s filter, lag 375s 375s The following objects are masked from 'package:base': 375s 375s intersect, setdiff, setequal, union 375s 375s Error in Ops.units(X[[i]], ...) : 375s both operands of the expression should be "units" objects 375s Error in Ops.units(X[[i]], ...) : 375s both operands of the expression should be "units" objects 375s stars object with 3 dimensions and 1 attribute 375s attribute(s): 375s Min. 1st Qu. Median Mean 3rd Qu. Max. 375s L7_ETMs.tif [degree_Celsius] -184 -19 -8 -10.2353 0 131 375s dimension(s): 375s from to offset delta refsys point x/y 375s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 375s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 375s band 1 6 NA NA NA NA 375s > 375s BEGIN TEST transform.R 375s 375s R version 4.3.2 (2023-10-31) -- "Eye Holes" 375s Copyright (C) 2023 The R Foundation for Statistical Computing 375s Platform: x86_64-pc-linux-gnu (64-bit) 375s 375s R is free software and comes with ABSOLUTELY NO WARRANTY. 375s You are welcome to redistribute it under certain conditions. 375s Type 'license()' or 'licence()' for distribution details. 375s 375s R is a collaborative project with many contributors. 375s Type 'contributors()' for more information and 375s 'citation()' on how to cite R or R packages in publications. 375s 375s Type 'demo()' for some demos, 'help()' for on-line help, or 375s 'help.start()' for an HTML browser interface to help. 375s Type 'q()' to quit R. 375s 375s > suppressPackageStartupMessages(library(stars)) 376s > suppressPackageStartupMessages(library(lwgeom)) 376s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 376s > (x = read_stars(geomatrix)) 376s stars object with 2 dimensions and 1 attribute 376s attribute(s): 376s Min. 1st Qu. Median Mean 3rd Qu. Max. 376s geomatrix.tif 74 107 123 126.765 132 255 376s dimension(s): 376s from to offset delta refsys point x/y 376s x 1 20 1841002 1.5 WGS 84 / UTM zone 11N TRUE [x] 376s y 1 20 1144003 -1.5 WGS 84 / UTM zone 11N TRUE [y] 376s sheared raster with parameters: -5 -5 376s > new = st_crs(4326) 376s > y = st_transform(x, new) 376s > plot(st_transform(st_as_sfc(st_bbox(x)), new), col = NA, border = 'red') 376s > plot(st_as_sfc(y, as_points=FALSE), col = NA, border = 'green', axes = TRUE, add = TRUE) 376s > image(y, add = TRUE) 376s > plot(st_as_sfc(y, as_points=TRUE), pch=3, cex=.5, col = 'blue', add = TRUE) 376s > plot(st_transform(st_as_sfc(x, as_points=FALSE), new), add = TRUE) 376s > 376s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 376s > x = read_stars(tif)[,1:10,1:10,1:3] 376s > x_ = st_transform(x, st_crs(4326)) 376s > x__ = st_transform_proj(x, st_crs(4326)$proj4string) 376s > st_crs(x_) = st_crs(x__) 376s > all.equal(x_,x__) 376s [1] TRUE 376s > 376s > # x__ = st_transform(x, x_) #now in st_warp 376s > # all.equal(x_, x__) 376s > 376s > x = st_xy2sfc(x, as_points = FALSE) 376s > (x_ = st_transform(x, st_crs(4326))) 377s stars object with 2 dimensions and 1 attribute 377s attribute(s): 377s Min. 1st Qu. Median Mean 3rd Qu. Max. 377s L7_ETMs.tif 25 43 51 50.72 60 74 377s dimension(s): 377s from to refsys point 377s geometry 1 100 WGS 84 FALSE 377s band 1 3 NA NA 377s values 377s geometry POLYGON ((-34.91617 -7.94...,...,POLYGON ((-34.91385 -7.95... 377s band NULL 377s > (x__ = st_transform_proj(x, st_crs(4326))) 377s stars object with 2 dimensions and 1 attribute 377s attribute(s): 377s Min. 1st Qu. Median Mean 3rd Qu. Max. 377s L7_ETMs.tif 25 43 51 50.72 60 74 377s dimension(s): 377s from to refsys point 377s geometry 1 100 WGS 84 FALSE 377s band 1 3 NA NA 377s values 377s geometry POLYGON ((-34.91617 -7.94...,...,POLYGON ((-34.91385 -7.95... 377s band NULL 377s > all.equal(x_,x__,check.attributes = FALSE) 377s [1] TRUE 377s > 377s > # nothing to transform: now errs: 377s > try(st_transform(st_as_stars(list(matrix(1,10,10))), st_crs(4326))) 377s > try(st_transform_proj(st_as_stars(list(matrix(1,10,10))), st_crs(4326))) 377s Error in st_transform.stars(st_as_stars(list(matrix(1, 10, 10))), st_crs(4326)) : 377s !is.na(st_crs(x)) is not TRUE 377s Error in st_transform_proj.stars(st_as_stars(list(matrix(1, 10, 10))), : 377s !is.na(st_crs(x)) is not TRUE 377s > 377s BEGIN TEST warp.R 377s 377s R version 4.3.2 (2023-10-31) -- "Eye Holes" 377s Copyright (C) 2023 The R Foundation for Statistical Computing 377s Platform: x86_64-pc-linux-gnu (64-bit) 377s 377s R is free software and comes with ABSOLUTELY NO WARRANTY. 377s You are welcome to redistribute it under certain conditions. 377s Type 'license()' or 'licence()' for distribution details. 377s 377s R is a collaborative project with many contributors. 377s Type 'contributors()' for more information and 377s 'citation()' on how to cite R or R packages in publications. 377s 377s Type 'demo()' for some demos, 'help()' for on-line help, or 377s 'help.start()' for an HTML browser interface to help. 377s Type 'q()' to quit R. 377s 377s > suppressPackageStartupMessages(library(stars)) 377s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 377s > x = read_stars(geomatrix) 377s > # can stars reproduce what gdal does, by default? 377s > x2 = st_warp(x, use_gdal = TRUE, no_data_value = -9999) 377s > y = st_warp(x, x2) 377s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE) } 377s > if (interactive()) { plot(y, breaks = "equal", axes=TRUE) } 377s > names(x2) = names(y) 377s > all.equal(x2, y) # yes? 377s [1] TRUE 377s > 377s > # does gdal reproduce with stars template object? 377s > (x2 = setNames(st_warp(x, y, use_gdal = TRUE, no_data_value=-1), "file.tif")) 377s stars object with 2 dimensions and 1 attribute 377s attribute(s): 377s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 377s file.tif 74 115 123 126.4289 132 255 224 377s dimension(s): 377s from to offset delta refsys point x/y 377s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 377s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 377s > 377s > # does gdal reproduce what stars does, default cell size? 377s > (x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE)) 378s stars object with 2 dimensions and 1 attribute 378s attribute(s): 378s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 378s geomatrix.tif 74 115 123 126.4289 132 255 224 378s dimension(s): 378s from to offset delta refsys x/y 378s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N [x] 378s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N [y] 378s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 378s stars object with 2 dimensions and 1 attribute 378s attribute(s): 378s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 378s file.tif 74 115 123 126.4289 132 255 224 378s dimension(s): 378s from to offset delta refsys point x/y 378s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 378s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 378s > 378s > # try with multiple bands: 378s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 378s > (x1 = read_stars(tif)) 378s stars object with 3 dimensions and 1 attribute 378s attribute(s): 378s Min. 1st Qu. Median Mean 3rd Qu. Max. 378s L7_ETMs.tif 1 54 69 68.91242 86 255 378s dimension(s): 378s from to offset delta refsys point x/y 378s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 378s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 378s band 1 6 NA NA NA NA 378s > tifcp = tempfile(fileext = ".tif") 378s > file.copy(tif, tifcp) 378s [1] TRUE 378s > x1p = read_stars(tifcp, proxy = TRUE) 378s > st_dimensions(x1p) 378s from to offset delta refsys point x/y 378s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 378s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 378s band 1 6 NA NA NA NA 378s > (x1a = st_warp(x1, crs = st_crs(4326))) 378s stars object with 3 dimensions and 1 attribute 378s attribute(s): 378s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 378s L7_ETMs.tif 1 54 69 68.93072 86 255 8778 378s dimension(s): 378s from to offset delta refsys x/y 378s x 1 350 -34.92 0.0002592 WGS 84 [x] 378s y 1 352 -7.95 -0.0002592 WGS 84 [y] 378s band 1 6 NA NA NA 378s > (x1b = setNames(st_warp(x1, x1p, use_gdal = TRUE, no_data_value=-1), "file.tif")) 378s stars object with 3 dimensions and 1 attribute 378s attribute(s): 378s Min. 1st Qu. Median Mean 3rd Qu. Max. 378s file.tif 1 54 69 68.91242 86 255 378s dimension(s): 378s from to offset delta refsys point x/y 378s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 378s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 378s band 1 6 NA NA NA NA 378s > 378s > # does gdal reproduce what stars does? Smaller grid: 378s > (x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE, cellsize = 3)) 378s stars object with 2 dimensions and 1 attribute 378s attribute(s): 378s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 378s geomatrix.tif 74 107 123 126.6857 132 255 727 378s dimension(s): 378s from to offset delta refsys x/y 378s x 1 44 1840902 3 WGS 84 / UTM zone 11N [x] 378s y 1 44 1144003 -3 WGS 84 / UTM zone 11N [y] 378s > # x2 = x2[,2:43,2:43] 378s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE, reset = FALSE) } 378s > if (interactive()) { plot(st_as_sfc(st_bbox(x2)), add = TRUE, col = NA, border = 'red') } 378s > ### doesn't work: FIXME: check with more recent GDAL: 378s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 378s stars object with 2 dimensions and 1 attribute 378s attribute(s): 378s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 378s file.tif 74 107 123 126.6584 132 255 727 378s dimension(s): 378s from to offset delta refsys point x/y 378s x 1 44 1840902 3 WGS 84 / UTM zone 11N FALSE [x] 378s y 1 44 1144003 -3 WGS 84 / UTM zone 11N FALSE [y] 378s > if (interactive()) { plot(y, breaks = "equal") } 378s > names(x2) = names(y) 378s > # isTRUE(all.equal(x2, y, check.attributes=FALSE)) 378s > mean(as.vector(x2[[1]]==y[[1]]), na.rm = TRUE) 378s [1] 0.9958644 378s > unique(as.vector(x2[[1]]-y[[1]])) 378s [1] NA 0 -33 -25 25 49 17 378s > 378s > g = st_as_stars() 378s > attr(g, "dimensions")$x$offset = 0 378s > g$values = as.vector(t(matrix(seq_len(prod(dim(g))), 180, 360))) 378s > if (interactive()) { plot(g, axes=TRUE) } 378s > a = st_warp(g, st_as_stars(), use_gdal=FALSE) 378s > b = st_warp(g, st_as_stars(), use_gdal=TRUE, no_data_value = -1) 378s > all.equal(a, b, check.attributes = FALSE) 378s [1] TRUE 378s > 378s BEGIN TEST write.R 378s 378s R version 4.3.2 (2023-10-31) -- "Eye Holes" 378s Copyright (C) 2023 The R Foundation for Statistical Computing 378s Platform: x86_64-pc-linux-gnu (64-bit) 378s 378s R is free software and comes with ABSOLUTELY NO WARRANTY. 378s You are welcome to redistribute it under certain conditions. 378s Type 'license()' or 'licence()' for distribution details. 378s 378s R is a collaborative project with many contributors. 378s Type 'contributors()' for more information and 378s 'citation()' on how to cite R or R packages in publications. 378s 378s Type 'demo()' for some demos, 'help()' for on-line help, or 378s 'help.start()' for an HTML browser interface to help. 378s Type 'q()' to quit R. 378s 378s > suppressPackageStartupMessages(library(stars)) 379s > 379s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 379s > (x = read_stars(tif)) 379s stars object with 3 dimensions and 1 attribute 379s attribute(s): 379s Min. 1st Qu. Median Mean 3rd Qu. Max. 379s L7_ETMs.tif 1 54 69 68.91242 86 255 379s dimension(s): 379s from to offset delta refsys point x/y 379s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 379s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 379s band 1 6 NA NA NA NA 379s > 379s > # write stars object: 379s > write_stars(x, tempfile(), driver = "GTiff") 379s > 379s > # write stars_proxy object: 379s > (x = read_stars(tif, proxy = TRUE)) 379s stars_proxy object with 1 attribute in 1 file(s): 379s $L7_ETMs.tif 379s [1] "[...]/L7_ETMs.tif" 379s 379s dimension(s): 379s from to offset delta refsys point x/y 379s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 379s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 379s band 1 6 NA NA NA NA 379s > write_stars(x, tempfile(), driver = "GTiff") 379s 379s > 380s autopkgtest [18:48:51]: test run-unit-test: -----------------------] 380s autopkgtest [18:48:51]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 380s run-unit-test PASS 380s autopkgtest [18:48:51]: test pkg-r-autopkgtest: preparing testbed 465s autopkgtest [18:50:16]: testbed dpkg architecture: amd64 465s autopkgtest [18:50:16]: testbed apt version: 2.7.12 465s autopkgtest [18:50:16]: test architecture: i386 465s autopkgtest [18:50:16]: @@@@@@@@@@@@@@@@@@@@ test bed setup 466s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 466s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 466s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 466s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 466s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 466s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [727 kB] 466s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [488 kB] 466s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 466s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 466s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 466s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 466s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1300 kB] 466s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4419 kB] 466s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 466s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [96.4 kB] 466s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [27.4 kB] 466s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 469s Fetched 11.8 MB in 2s (7730 kB/s) 469s Reading package lists... 471s Reading package lists... 471s Building dependency tree... 471s Reading state information... 472s Calculating upgrade... 472s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 472s Reading package lists... 472s Building dependency tree... 472s Reading state information... 473s 0 upgraded, 0 newly installed, 0 to remove and 248 not upgraded. 473s sh: Attempting to set up Debian/Ubuntu apt sources automatically 473s sh: Distribution appears to be Ubuntu 474s Reading package lists... 475s Building dependency tree... 475s Reading state information... 475s eatmydata is already the newest version (131-1). 475s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 475s Reading package lists... 475s Building dependency tree... 475s Reading state information... 475s dbus is already the newest version (1.14.10-4ubuntu1). 475s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 475s Reading package lists... 476s Building dependency tree... 476s Reading state information... 476s rng-tools-debian is already the newest version (2.4). 476s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 476s Reading package lists... 476s Building dependency tree... 476s Reading state information... 477s The following packages will be REMOVED: 477s cloud-init* python3-configobj* python3-debconf* 477s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 477s After this operation, 3256 kB disk space will be freed. 477s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 477s Removing cloud-init (24.1.2-0ubuntu1) ... 478s Removing python3-configobj (5.0.8-3) ... 478s Removing python3-debconf (1.5.86) ... 478s Processing triggers for man-db (2.12.0-3) ... 478s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 478s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 479s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 479s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 479s invoke-rc.d: policy-rc.d denied execution of try-restart. 479s Reading package lists... 479s Building dependency tree... 479s Reading state information... 480s linux-generic is already the newest version (6.8.0-11.11+1). 480s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 480s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 480s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 480s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 482s Reading package lists... 482s Reading package lists... 482s Building dependency tree... 482s Reading state information... 484s Calculating upgrade... 484s autopkgtest [18:50:34]: rebooting testbed after setup commands that affected boot 484s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 484s Reading package lists... 484s Building dependency tree... 484s Reading state information... 484s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 534s Note, using file '/tmp/autopkgtest.skOjQf/3-autopkgtest-satdep.dsc' to get the build dependencies 534s Reading package lists... 534s Building dependency tree... 534s Reading state information... 534s Starting pkgProblemResolver with broken count: 0 534s Starting 2 pkgProblemResolver with broken count: 0 534s Done 535s The following NEW packages will be installed: 535s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 535s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 535s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 535s g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 535s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins gfortran 535s gfortran-13 gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu 535s icu-devtools javascript-common libaec0 libarmadillo12 libarpack2 libasan8 535s libatomic1 libblas-dev libblas3 libblosc1 libbz2-dev libc-dev-bin libc6-dev 535s libcairo2 libcc1-0 libcfitsio10 libcrypt-dev libdatrie1 libdav1d7 libde265-0 535s libdeflate0 libfontconfig1 libfreexl1 libfyba0 libgcc-13-dev libgdal34 535s libgeos-c1v5 libgeos3.12.1 libgeotiff5 libgfortran-13-dev libgfortran5 535s libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1 535s libhdf5-hl-100 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 535s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 535s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 535s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 535s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 535s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 535s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 535s libkmlbase1 libkmldom1 libkmlengine1 liblapack-dev liblapack3 liblcms2-2 535s liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev libminizip1 libmpc3 535s libmysqlclient21 libncurses-dev libnetcdf19 libodbc2 libodbcinst2 libogdi4.1 535s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 535s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 535s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpoppler134 libpq5 535s libproj25 libqhull-r8.0 libquadmath0 libreadline-dev librttopo1 libsharpyuv0 535s libsm6 libsnappy1v5 libspatialite8 libstdc++-13-dev libsuperlu6 libsz2 535s libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 535s libudunits2-0 libudunits2-data liburiparser1 libwebp7 libxcb-render0 535s libxcb-shm0 libxerces-c3.2 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev 535s littler mysql-common node-bootstrap-sass node-html5shiv node-normalize.css 535s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 535s proj-data r-base-core r-base-dev r-cran-abind r-cran-areal r-cran-askpass 535s r-cran-base64enc r-cran-bdsmatrix r-cran-brio r-cran-bslib r-cran-cachem 535s r-cran-cairo r-cran-callr r-cran-class r-cran-classint r-cran-cli 535s r-cran-clue r-cran-cluster r-cran-codetools r-cran-collapse 535s r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon 535s r-cran-curl r-cran-dbi r-cran-deldir r-cran-desc r-cran-diffobj 535s r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-ellipsis r-cran-evaluate 535s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fnn r-cran-fontawesome 535s r-cran-formula r-cran-fs r-cran-future r-cran-future.apply r-cran-generics 535s r-cran-ggforce r-cran-ggplot2 r-cran-ggthemes r-cran-globals r-cran-glue 535s r-cran-goftest r-cran-gridextra r-cran-gtable r-cran-highr r-cran-htmltools 535s r-cran-httpuv r-cran-httr r-cran-intervals r-cran-isoband r-cran-jquerylib 535s r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later 535s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 535s r-cran-littler r-cran-lmtest r-cran-lwgeom r-cran-magrittr r-cran-mapdata 535s r-cran-maps r-cran-mass r-cran-matrix r-cran-maxlik r-cran-memoise 535s r-cran-mgcv r-cran-mime r-cran-misctools r-cran-munsell r-cran-ncdfgeom 535s r-cran-ncmeta r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-pbapply 535s r-cran-pcict r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 535s r-cran-pkgload r-cran-plm r-cran-polyclip r-cran-praise r-cran-processx 535s r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 535s r-cran-randomforest r-cran-rappdirs r-cran-raster r-cran-rbibutils 535s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rdpack 535s r-cran-rematch2 r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf 535s r-cran-rpart r-cran-rprojroot r-cran-s2 r-cran-sandwich r-cran-sass 535s r-cran-scales r-cran-sf r-cran-shiny r-cran-sourcetools r-cran-sp 535s r-cran-spacetime r-cran-spatstat r-cran-spatstat.data 535s r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.linnet 535s r-cran-spatstat.model r-cran-spatstat.random r-cran-spatstat.sparse 535s r-cran-spatstat.utils r-cran-stars r-cran-stringi r-cran-stringr 535s r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor r-cran-terra 535s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 535s r-cran-tweenr r-cran-units r-cran-utf8 r-cran-vctrs r-cran-viridis 535s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk r-cran-xfun 535s r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo rpcsvc-proto unixodbc-common 535s unzip x11-common xdg-utils zip zlib1g-dev 535s 0 upgraded, 343 newly installed, 0 to remove and 0 not upgraded. 535s Need to get 375 MB of archives. 535s After this operation, 1102 MB of additional disk space will be used. 535s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu6 [20.4 kB] 535s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 535s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 535s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 535s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu6 [2126 kB] 535s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 535s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 535s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 535s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 535s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 535s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 535s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 535s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 535s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 535s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 535s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 535s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 535s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 535s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 535s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 535s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 535s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 535s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 535s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 535s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 535s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 535s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 535s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 535s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 535s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 535s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 535s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 535s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 535s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 535s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 535s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 535s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 535s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 535s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 535s Get:40 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 535s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 535s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 gdal-data all 3.8.4+dfsg-1 [261 kB] 535s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 gdal-plugins amd64 3.8.4+dfsg-1 [24.5 kB] 535s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 536s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 536s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 536s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 536s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 536s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 536s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 536s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 536s Get:52 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 536s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 536s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 536s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libarpack2 amd64 3.9.1-1 [105 kB] 536s Get:56 http://ftpmaster.internal/ubuntu noble/universe amd64 libsuperlu6 amd64 6.0.1+dfsg1-1 [184 kB] 536s Get:57 http://ftpmaster.internal/ubuntu noble/universe amd64 libarmadillo12 amd64 1:12.6.7+dfsg-1 [135 kB] 536s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 536s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libsnappy1v5 amd64 1.1.10-1 [28.4 kB] 536s Get:60 http://ftpmaster.internal/ubuntu noble/universe amd64 libblosc1 amd64 1.21.5+ds-1 [36.5 kB] 536s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 536s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 536s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 536s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 536s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 536s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 536s Get:67 http://ftpmaster.internal/ubuntu noble/universe amd64 libcfitsio10 amd64 4.3.1-1 [528 kB] 536s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 536s Get:69 http://ftpmaster.internal/ubuntu noble/universe amd64 libdav1d7 amd64 1.4.0-1 [605 kB] 536s Get:70 http://ftpmaster.internal/ubuntu noble/universe amd64 libde265-0 amd64 1.0.15-1 [192 kB] 536s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 536s Get:72 http://ftpmaster.internal/ubuntu noble/universe amd64 libfyba0 amd64 4.1.1-8 [119 kB] 536s Get:73 http://ftpmaster.internal/ubuntu noble/universe amd64 libminizip1 amd64 1:1.3.dfsg-3ubuntu1 [21.8 kB] 536s Get:74 http://ftpmaster.internal/ubuntu noble/universe amd64 libfreexl1 amd64 2.0.0-1 [41.8 kB] 536s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeos3.12.1 amd64 3.12.1-1 [852 kB] 536s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeos-c1v5 amd64 3.12.1-1 [96.1 kB] 536s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 proj-data all 9.3.1-1 [7867 kB] 536s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 536s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 536s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 536s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 536s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 536s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 536s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 536s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libproj25 amd64 9.3.1-1 [1379 kB] 536s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeotiff5 amd64 1.7.1-5 [62.5 kB] 536s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libgif7 amd64 5.2.1-2.5 [34.0 kB] 536s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf4-0-alt amd64 4.2.16-3 [282 kB] 536s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 536s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 536s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif-plugin-dav1d amd64 1.17.6-1ubuntu1 [10.9 kB] 536s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif-plugin-libde265 amd64 1.17.6-1ubuntu1 [9024 B] 536s Get:93 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif1 amd64 1.17.6-1ubuntu1 [325 kB] 536s Get:94 http://ftpmaster.internal/ubuntu noble/universe amd64 liburiparser1 amd64 0.9.7+dfsg-2 [35.9 kB] 536s Get:95 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmlbase1 amd64 1.3.0-10 [47.4 kB] 536s Get:96 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmldom1 amd64 1.3.0-10 [151 kB] 536s Get:97 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmlengine1 amd64 1.3.0-10 [69.3 kB] 536s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 mysql-common all 5.8+1.1.0 [6626 B] 536s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libmysqlclient21 amd64 8.0.36-1 [1283 kB] 536s Get:100 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB] 536s Get:101 http://ftpmaster.internal/ubuntu noble/universe amd64 libnetcdf19 amd64 1:4.9.2-3ubuntu1 [472 kB] 536s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libltdl7 amd64 2.4.7-7 [40.5 kB] 536s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libodbc2 amd64 2.3.12-1 [159 kB] 536s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 unixodbc-common all 2.3.12-1 [8524 B] 536s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libodbcinst2 amd64 2.3.12-1 [30.9 kB] 536s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 libogdi4.1 amd64 4.1.1+ds-1 [218 kB] 536s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libopenjp2-7 amd64 2.5.0-2 [174 kB] 536s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 liblcms2-2 amd64 2.14-2 [161 kB] 536s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpoppler134 amd64 24.02.0-1ubuntu2 [1112 kB] 536s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpq5 amd64 16.2-1 [138 kB] 536s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 libqhull-r8.0 amd64 2020.2-6 [194 kB] 536s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 librttopo1 amd64 1.1.0-3 [191 kB] 536s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 libspatialite8 amd64 5.1.0-1 [2055 kB] 536s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 libxerces-c3.2 amd64 3.2.4+debian-1.1 [1110 kB] 536s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 libgdal34 amd64 3.8.4+dfsg-1 [8343 kB] 536s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 536s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 536s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 536s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 536s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 536s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 536s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 536s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 536s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 536s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 536s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 536s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 536s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 536s Get:129 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 536s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 536s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 536s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 536s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 536s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 536s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 536s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 536s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 536s Get:138 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 536s Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 536s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 536s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 536s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 536s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 536s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 536s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 536s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 536s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 536s Get:148 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 536s Get:149 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 536s Get:150 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 536s Get:151 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 536s Get:152 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 536s Get:153 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 536s Get:154 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 536s Get:155 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 536s Get:156 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 536s Get:157 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 536s Get:158 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 536s Get:159 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 536s Get:160 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.14-1 [779 kB] 536s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 libudunits2-data all 2.2.28-7 [19.3 kB] 536s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 libudunits2-0 amd64 2.2.28-7 [54.2 kB] 536s Get:163 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 536s Get:164 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 536s Get:165 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 536s Get:166 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 536s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 536s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 536s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 536s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 536s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 536s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 536s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 536s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 536s Get:175 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 536s Get:176 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 536s Get:177 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 536s Get:178 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 536s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 536s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 536s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 536s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 536s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 536s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 536s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 536s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 536s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 536s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 536s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 536s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 536s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 536s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 536s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 536s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 536s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 536s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 536s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 536s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 537s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 537s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-class amd64 7.3-22-2 [88.3 kB] 537s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 537s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-e1071 amd64 1.7-14-1 [558 kB] 537s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-kernsmooth amd64 2.23-22-1 [91.7 kB] 537s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-classint amd64 0.4-10+dfsg-1 [106 kB] 537s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 537s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 537s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 537s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-wk amd64 0.9.1-1 [1784 kB] 537s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-s2 amd64 1.1.6-1 [1980 kB] 537s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-units amd64 0.8-5+dfsg-1 [275 kB] 537s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sf amd64 1.0-15+dfsg-1 [3028 kB] 537s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 537s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 537s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 537s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 537s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bdsmatrix amd64 1.3-6-1 [293 kB] 537s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 537s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 537s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 537s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 537s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 537s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 537s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 537s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 537s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 537s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 537s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 537s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 537s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 537s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 537s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 537s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 537s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 537s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 537s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cluster amd64 2.1.6-1 [554 kB] 537s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-clue amd64 0.3-65-1 [960 kB] 537s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 537s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-collapse amd64 2.0.10-1 [3112 kB] 537s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 537s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 537s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 537s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rex all 1.2.1-1 [129 kB] 537s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 537s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 537s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 537s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 537s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 537s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 537s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 537s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-deldir amd64 2.0-4-1 [270 kB] 537s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 537s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 537s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 537s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 537s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fnn amd64 1.1.4-1 [122 kB] 537s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 537s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 537s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-globals all 0.16.2-1 [117 kB] 537s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 537s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-parallelly amd64 1.37.1-1 [365 kB] 537s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 537s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-future.apply all 1.11.1+dfsg-1 [171 kB] 537s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 537s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 537s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 537s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 537s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 537s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 537s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 537s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 537s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 537s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 537s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 537s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 537s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tweenr amd64 2.0.2-1 [397 kB] 537s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-polyclip amd64 1.10-6-1 [113 kB] 537s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-systemfonts amd64 1.0.5-1 [229 kB] 537s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppeigen amd64 0.3.3.9.4-1 [1189 kB] 537s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggforce amd64 0.4.1-1 [1846 kB] 537s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 537s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 537s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggthemes all 5.1.0-1 [434 kB] 537s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] 537s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 537s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 537s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 537s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 537s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 537s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 537s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-intervals amd64 0.15.4-1 [756 kB] 537s Get:291 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 537s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 537s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB] 537s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB] 537s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lwgeom amd64 0.2-13-3 [420 kB] 537s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-maps amd64 3.4.2-1 [2359 kB] 537s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 537s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB] 537s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sandwich all 3.1-0-1 [1484 kB] 537s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-maxlik all 1.5-2-1 [1550 kB] 538s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rnetcdf amd64 2.9-1-1 [232 kB] 538s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 538s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ncmeta all 0.3.6-1 [360 kB] 538s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stars all 0.6-4-1 [4030 kB] 538s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 538s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 538s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pcict amd64 0.5-4.4-1 [94.4 kB] 538s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 538s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 538s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 538s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rbibutils amd64 2.2.16-1 [754 kB] 538s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rdpack all 2.6-1 [742 kB] 538s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plm all 2.6-3-1 [2141 kB] 538s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 538s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-randomforest amd64 4.7-1.1-1 [215 kB] 538s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sp amd64 1:2.1-2+dfsg-1 [1447 kB] 538s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-terra amd64 1.7-65-1 [3676 kB] 538s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-raster amd64 3.6-26-1 [3118 kB] 538s Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 538s Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 538s Get:321 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 538s Get:322 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 538s Get:323 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 538s Get:324 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 538s Get:325 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 538s Get:326 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 538s Get:327 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 538s Get:328 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rpart amd64 4.1.23-1 [661 kB] 538s Get:329 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xts amd64 0.13.2-1 [772 kB] 538s Get:330 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spacetime all 1.3-1-1 [2804 kB] 538s Get:331 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.utils amd64 3.0-4-1 [361 kB] 538s Get:332 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.data all 3.0-4-1 [4090 kB] 538s Get:333 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.geom amd64 3.2-8-1 [3817 kB] 538s Get:334 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.random amd64 3.2-2-1 [1140 kB] 538s Get:335 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] 538s Get:336 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.sparse amd64 3.0-3-1 [215 kB] 538s Get:337 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.explore amd64 3.2-5-1 [3283 kB] 538s Get:338 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.model amd64 3.2-8-1 [3290 kB] 538s Get:339 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.linnet amd64 3.1-3-1 [1408 kB] 538s Get:340 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat amd64 3.0-7-1 [3817 kB] 538s Get:341 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 538s Get:342 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 538s Get:343 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 539s Preconfiguring packages ... 539s Fetched 375 MB in 3s (131 MB/s) 539s Selecting previously unselected package libc-dev-bin. 539s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 539s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu6_amd64.deb ... 539s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 539s Selecting previously unselected package linux-libc-dev:amd64. 539s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 539s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 539s Selecting previously unselected package libcrypt-dev:amd64. 539s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 539s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 539s Selecting previously unselected package rpcsvc-proto. 539s Preparing to unpack .../003-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 539s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 539s Selecting previously unselected package libc6-dev:amd64. 539s Preparing to unpack .../004-libc6-dev_2.39-0ubuntu6_amd64.deb ... 539s Unpacking libc6-dev:amd64 (2.39-0ubuntu6) ... 539s Selecting previously unselected package libisl23:amd64. 539s Preparing to unpack .../005-libisl23_0.26-3_amd64.deb ... 539s Unpacking libisl23:amd64 (0.26-3) ... 539s Selecting previously unselected package libmpc3:amd64. 539s Preparing to unpack .../006-libmpc3_1.3.1-1_amd64.deb ... 539s Unpacking libmpc3:amd64 (1.3.1-1) ... 539s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 539s Preparing to unpack .../007-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 539s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 540s Selecting previously unselected package cpp-13. 540s Preparing to unpack .../008-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 540s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 540s Selecting previously unselected package cpp-x86-64-linux-gnu. 540s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 540s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 540s Selecting previously unselected package cpp. 540s Preparing to unpack .../010-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 540s Unpacking cpp (4:13.2.0-7ubuntu1) ... 540s Selecting previously unselected package libcc1-0:amd64. 540s Preparing to unpack .../011-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 540s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 540s Selecting previously unselected package libgomp1:amd64. 540s Preparing to unpack .../012-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 540s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 540s Selecting previously unselected package libitm1:amd64. 540s Preparing to unpack .../013-libitm1_14-20240303-1ubuntu1_amd64.deb ... 540s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 540s Selecting previously unselected package libatomic1:amd64. 540s Preparing to unpack .../014-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 540s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 540s Selecting previously unselected package libasan8:amd64. 540s Preparing to unpack .../015-libasan8_14-20240303-1ubuntu1_amd64.deb ... 540s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 540s Selecting previously unselected package liblsan0:amd64. 540s Preparing to unpack .../016-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 540s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 540s Selecting previously unselected package libtsan2:amd64. 540s Preparing to unpack .../017-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 540s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 540s Selecting previously unselected package libubsan1:amd64. 540s Preparing to unpack .../018-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 540s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 540s Selecting previously unselected package libhwasan0:amd64. 540s Preparing to unpack .../019-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 540s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 540s Selecting previously unselected package libquadmath0:amd64. 540s Preparing to unpack .../020-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 540s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 540s Selecting previously unselected package libgcc-13-dev:amd64. 540s Preparing to unpack .../021-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 540s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 540s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 540s Preparing to unpack .../022-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 540s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 542s Selecting previously unselected package gcc-13. 542s Preparing to unpack .../023-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 542s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 542s Selecting previously unselected package gcc-x86-64-linux-gnu. 542s Preparing to unpack .../024-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 542s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 542s Selecting previously unselected package gcc. 542s Preparing to unpack .../025-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 542s Unpacking gcc (4:13.2.0-7ubuntu1) ... 542s Selecting previously unselected package libstdc++-13-dev:amd64. 542s Preparing to unpack .../026-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 542s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 542s Selecting previously unselected package g++-13-x86-64-linux-gnu. 542s Preparing to unpack .../027-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 542s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 542s Selecting previously unselected package g++-13. 542s Preparing to unpack .../028-g++-13_13.2.0-17ubuntu2_amd64.deb ... 542s Unpacking g++-13 (13.2.0-17ubuntu2) ... 542s Selecting previously unselected package g++-x86-64-linux-gnu. 542s Preparing to unpack .../029-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 542s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 542s Selecting previously unselected package g++. 542s Preparing to unpack .../030-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 542s Unpacking g++ (4:13.2.0-7ubuntu1) ... 542s Selecting previously unselected package build-essential. 542s Preparing to unpack .../031-build-essential_12.10ubuntu1_amd64.deb ... 542s Unpacking build-essential (12.10ubuntu1) ... 542s Selecting previously unselected package dctrl-tools. 542s Preparing to unpack .../032-dctrl-tools_2.24-3build2_amd64.deb ... 542s Unpacking dctrl-tools (2.24-3build2) ... 542s Selecting previously unselected package fonts-dejavu-mono. 542s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8_all.deb ... 542s Unpacking fonts-dejavu-mono (2.37-8) ... 542s Selecting previously unselected package fonts-dejavu-core. 542s Preparing to unpack .../034-fonts-dejavu-core_2.37-8_all.deb ... 542s Unpacking fonts-dejavu-core (2.37-8) ... 542s Selecting previously unselected package fontconfig-config. 542s Preparing to unpack .../035-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 542s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 542s Selecting previously unselected package libfontconfig1:amd64. 542s Preparing to unpack .../036-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 542s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 542s Selecting previously unselected package fontconfig. 542s Preparing to unpack .../037-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 542s Unpacking fontconfig (2.15.0-1ubuntu1) ... 542s Selecting previously unselected package fonts-font-awesome. 542s Preparing to unpack .../038-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 542s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 542s Selecting previously unselected package fonts-glyphicons-halflings. 542s Preparing to unpack .../039-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 542s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 542s Selecting previously unselected package fonts-mathjax. 542s Preparing to unpack .../040-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 542s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 542s Selecting previously unselected package gdal-data. 542s Preparing to unpack .../041-gdal-data_3.8.4+dfsg-1_all.deb ... 542s Unpacking gdal-data (3.8.4+dfsg-1) ... 542s Selecting previously unselected package gdal-plugins:amd64. 542s Preparing to unpack .../042-gdal-plugins_3.8.4+dfsg-1_amd64.deb ... 542s Unpacking gdal-plugins:amd64 (3.8.4+dfsg-1) ... 542s Selecting previously unselected package libgfortran5:amd64. 542s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 542s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 542s Selecting previously unselected package libgfortran-13-dev:amd64. 542s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 542s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 542s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 542s Preparing to unpack .../045-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 542s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 542s Selecting previously unselected package gfortran-13. 542s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 542s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 542s Selecting previously unselected package gfortran-x86-64-linux-gnu. 542s Preparing to unpack .../047-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 542s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 542s Selecting previously unselected package gfortran. 543s Preparing to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 543s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 543s Selecting previously unselected package icu-devtools. 543s Preparing to unpack .../049-icu-devtools_74.2-1ubuntu1_amd64.deb ... 543s Unpacking icu-devtools (74.2-1ubuntu1) ... 543s Selecting previously unselected package javascript-common. 543s Preparing to unpack .../050-javascript-common_11+nmu1_all.deb ... 543s Unpacking javascript-common (11+nmu1) ... 543s Selecting previously unselected package libaec0:amd64. 543s Preparing to unpack .../051-libaec0_1.1.2-1_amd64.deb ... 543s Unpacking libaec0:amd64 (1.1.2-1) ... 543s Selecting previously unselected package libblas3:amd64. 543s Preparing to unpack .../052-libblas3_3.12.0-3_amd64.deb ... 543s Unpacking libblas3:amd64 (3.12.0-3) ... 543s Selecting previously unselected package liblapack3:amd64. 543s Preparing to unpack .../053-liblapack3_3.12.0-3_amd64.deb ... 543s Unpacking liblapack3:amd64 (3.12.0-3) ... 543s Selecting previously unselected package libarpack2:amd64. 543s Preparing to unpack .../054-libarpack2_3.9.1-1_amd64.deb ... 543s Unpacking libarpack2:amd64 (3.9.1-1) ... 543s Selecting previously unselected package libsuperlu6:amd64. 543s Preparing to unpack .../055-libsuperlu6_6.0.1+dfsg1-1_amd64.deb ... 543s Unpacking libsuperlu6:amd64 (6.0.1+dfsg1-1) ... 543s Selecting previously unselected package libarmadillo12. 543s Preparing to unpack .../056-libarmadillo12_1%3a12.6.7+dfsg-1_amd64.deb ... 543s Unpacking libarmadillo12 (1:12.6.7+dfsg-1) ... 543s Selecting previously unselected package libblas-dev:amd64. 543s Preparing to unpack .../057-libblas-dev_3.12.0-3_amd64.deb ... 543s Unpacking libblas-dev:amd64 (3.12.0-3) ... 543s Selecting previously unselected package libsnappy1v5:amd64. 543s Preparing to unpack .../058-libsnappy1v5_1.1.10-1_amd64.deb ... 543s Unpacking libsnappy1v5:amd64 (1.1.10-1) ... 543s Selecting previously unselected package libblosc1:amd64. 543s Preparing to unpack .../059-libblosc1_1.21.5+ds-1_amd64.deb ... 543s Unpacking libblosc1:amd64 (1.21.5+ds-1) ... 543s Selecting previously unselected package libbz2-dev:amd64. 543s Preparing to unpack .../060-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 543s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 543s Selecting previously unselected package libpixman-1-0:amd64. 543s Preparing to unpack .../061-libpixman-1-0_0.42.2-1_amd64.deb ... 543s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 543s Selecting previously unselected package libxcb-render0:amd64. 543s Preparing to unpack .../062-libxcb-render0_1.15-1_amd64.deb ... 543s Unpacking libxcb-render0:amd64 (1.15-1) ... 543s Selecting previously unselected package libxcb-shm0:amd64. 543s Preparing to unpack .../063-libxcb-shm0_1.15-1_amd64.deb ... 543s Unpacking libxcb-shm0:amd64 (1.15-1) ... 543s Selecting previously unselected package libxrender1:amd64. 543s Preparing to unpack .../064-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 543s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 543s Selecting previously unselected package libcairo2:amd64. 543s Preparing to unpack .../065-libcairo2_1.18.0-1_amd64.deb ... 543s Unpacking libcairo2:amd64 (1.18.0-1) ... 543s Selecting previously unselected package libcfitsio10:amd64. 543s Preparing to unpack .../066-libcfitsio10_4.3.1-1_amd64.deb ... 543s Unpacking libcfitsio10:amd64 (4.3.1-1) ... 543s Selecting previously unselected package libdatrie1:amd64. 543s Preparing to unpack .../067-libdatrie1_0.2.13-3_amd64.deb ... 543s Unpacking libdatrie1:amd64 (0.2.13-3) ... 543s Selecting previously unselected package libdav1d7:amd64. 543s Preparing to unpack .../068-libdav1d7_1.4.0-1_amd64.deb ... 543s Unpacking libdav1d7:amd64 (1.4.0-1) ... 543s Selecting previously unselected package libde265-0:amd64. 543s Preparing to unpack .../069-libde265-0_1.0.15-1_amd64.deb ... 543s Unpacking libde265-0:amd64 (1.0.15-1) ... 543s Selecting previously unselected package libdeflate0:amd64. 543s Preparing to unpack .../070-libdeflate0_1.19-1_amd64.deb ... 543s Unpacking libdeflate0:amd64 (1.19-1) ... 543s Selecting previously unselected package libfyba0:amd64. 543s Preparing to unpack .../071-libfyba0_4.1.1-8_amd64.deb ... 543s Unpacking libfyba0:amd64 (4.1.1-8) ... 543s Selecting previously unselected package libminizip1:amd64. 543s Preparing to unpack .../072-libminizip1_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 543s Unpacking libminizip1:amd64 (1:1.3.dfsg-3ubuntu1) ... 543s Selecting previously unselected package libfreexl1:amd64. 543s Preparing to unpack .../073-libfreexl1_2.0.0-1_amd64.deb ... 543s Unpacking libfreexl1:amd64 (2.0.0-1) ... 543s Selecting previously unselected package libgeos3.12.1:amd64. 543s Preparing to unpack .../074-libgeos3.12.1_3.12.1-1_amd64.deb ... 543s Unpacking libgeos3.12.1:amd64 (3.12.1-1) ... 543s Selecting previously unselected package libgeos-c1v5:amd64. 543s Preparing to unpack .../075-libgeos-c1v5_3.12.1-1_amd64.deb ... 543s Unpacking libgeos-c1v5:amd64 (3.12.1-1) ... 543s Selecting previously unselected package proj-data. 543s Preparing to unpack .../076-proj-data_9.3.1-1_all.deb ... 543s Unpacking proj-data (9.3.1-1) ... 543s Selecting previously unselected package libjbig0:amd64. 544s Preparing to unpack .../077-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 544s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 544s Selecting previously unselected package libjpeg-turbo8:amd64. 544s Preparing to unpack .../078-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 544s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 544s Selecting previously unselected package libjpeg8:amd64. 544s Preparing to unpack .../079-libjpeg8_8c-2ubuntu11_amd64.deb ... 544s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 544s Selecting previously unselected package liblerc4:amd64. 544s Preparing to unpack .../080-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 544s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 544s Selecting previously unselected package libsharpyuv0:amd64. 544s Preparing to unpack .../081-libsharpyuv0_1.3.2-0.4_amd64.deb ... 544s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 544s Selecting previously unselected package libwebp7:amd64. 544s Preparing to unpack .../082-libwebp7_1.3.2-0.4_amd64.deb ... 544s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 544s Selecting previously unselected package libtiff6:amd64. 544s Preparing to unpack .../083-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 544s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 544s Selecting previously unselected package libproj25:amd64. 544s Preparing to unpack .../084-libproj25_9.3.1-1_amd64.deb ... 544s Unpacking libproj25:amd64 (9.3.1-1) ... 544s Selecting previously unselected package libgeotiff5:amd64. 544s Preparing to unpack .../085-libgeotiff5_1.7.1-5_amd64.deb ... 544s Unpacking libgeotiff5:amd64 (1.7.1-5) ... 544s Selecting previously unselected package libgif7:amd64. 544s Preparing to unpack .../086-libgif7_5.2.1-2.5_amd64.deb ... 544s Unpacking libgif7:amd64 (5.2.1-2.5) ... 544s Selecting previously unselected package libhdf4-0-alt. 544s Preparing to unpack .../087-libhdf4-0-alt_4.2.16-3_amd64.deb ... 544s Unpacking libhdf4-0-alt (4.2.16-3) ... 544s Selecting previously unselected package libsz2:amd64. 544s Preparing to unpack .../088-libsz2_1.1.2-1_amd64.deb ... 544s Unpacking libsz2:amd64 (1.1.2-1) ... 544s Selecting previously unselected package libhdf5-103-1:amd64. 544s Preparing to unpack .../089-libhdf5-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 544s Unpacking libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 544s Selecting previously unselected package libheif-plugin-dav1d:amd64. 544s Preparing to unpack .../090-libheif-plugin-dav1d_1.17.6-1ubuntu1_amd64.deb ... 544s Unpacking libheif-plugin-dav1d:amd64 (1.17.6-1ubuntu1) ... 544s Selecting previously unselected package libheif-plugin-libde265:amd64. 544s Preparing to unpack .../091-libheif-plugin-libde265_1.17.6-1ubuntu1_amd64.deb ... 544s Unpacking libheif-plugin-libde265:amd64 (1.17.6-1ubuntu1) ... 544s Selecting previously unselected package libheif1:amd64. 544s Preparing to unpack .../092-libheif1_1.17.6-1ubuntu1_amd64.deb ... 544s Unpacking libheif1:amd64 (1.17.6-1ubuntu1) ... 544s Selecting previously unselected package liburiparser1:amd64. 544s Preparing to unpack .../093-liburiparser1_0.9.7+dfsg-2_amd64.deb ... 544s Unpacking liburiparser1:amd64 (0.9.7+dfsg-2) ... 544s Selecting previously unselected package libkmlbase1:amd64. 544s Preparing to unpack .../094-libkmlbase1_1.3.0-10_amd64.deb ... 544s Unpacking libkmlbase1:amd64 (1.3.0-10) ... 544s Selecting previously unselected package libkmldom1:amd64. 544s Preparing to unpack .../095-libkmldom1_1.3.0-10_amd64.deb ... 544s Unpacking libkmldom1:amd64 (1.3.0-10) ... 544s Selecting previously unselected package libkmlengine1:amd64. 544s Preparing to unpack .../096-libkmlengine1_1.3.0-10_amd64.deb ... 544s Unpacking libkmlengine1:amd64 (1.3.0-10) ... 544s Selecting previously unselected package mysql-common. 544s Preparing to unpack .../097-mysql-common_5.8+1.1.0_all.deb ... 544s Unpacking mysql-common (5.8+1.1.0) ... 544s Selecting previously unselected package libmysqlclient21:amd64. 544s Preparing to unpack .../098-libmysqlclient21_8.0.36-1_amd64.deb ... 544s Unpacking libmysqlclient21:amd64 (8.0.36-1) ... 544s Selecting previously unselected package libhdf5-hl-100:amd64. 544s Preparing to unpack .../099-libhdf5-hl-100_1.10.10+repack-3ubuntu1_amd64.deb ... 544s Unpacking libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 544s Selecting previously unselected package libnetcdf19:amd64. 544s Preparing to unpack .../100-libnetcdf19_1%3a4.9.2-3ubuntu1_amd64.deb ... 544s Unpacking libnetcdf19:amd64 (1:4.9.2-3ubuntu1) ... 544s Selecting previously unselected package libltdl7:amd64. 544s Preparing to unpack .../101-libltdl7_2.4.7-7_amd64.deb ... 544s Unpacking libltdl7:amd64 (2.4.7-7) ... 544s Selecting previously unselected package libodbc2:amd64. 544s Preparing to unpack .../102-libodbc2_2.3.12-1_amd64.deb ... 544s Unpacking libodbc2:amd64 (2.3.12-1) ... 544s Selecting previously unselected package unixodbc-common. 544s Preparing to unpack .../103-unixodbc-common_2.3.12-1_all.deb ... 544s Unpacking unixodbc-common (2.3.12-1) ... 544s Selecting previously unselected package libodbcinst2:amd64. 544s Preparing to unpack .../104-libodbcinst2_2.3.12-1_amd64.deb ... 544s Unpacking libodbcinst2:amd64 (2.3.12-1) ... 544s Selecting previously unselected package libogdi4.1. 544s Preparing to unpack .../105-libogdi4.1_4.1.1+ds-1_amd64.deb ... 544s Unpacking libogdi4.1 (4.1.1+ds-1) ... 544s Selecting previously unselected package libopenjp2-7:amd64. 544s Preparing to unpack .../106-libopenjp2-7_2.5.0-2_amd64.deb ... 544s Unpacking libopenjp2-7:amd64 (2.5.0-2) ... 544s Selecting previously unselected package liblcms2-2:amd64. 544s Preparing to unpack .../107-liblcms2-2_2.14-2_amd64.deb ... 544s Unpacking liblcms2-2:amd64 (2.14-2) ... 544s Selecting previously unselected package libpoppler134:amd64. 544s Preparing to unpack .../108-libpoppler134_24.02.0-1ubuntu2_amd64.deb ... 544s Unpacking libpoppler134:amd64 (24.02.0-1ubuntu2) ... 544s Selecting previously unselected package libpq5:amd64. 544s Preparing to unpack .../109-libpq5_16.2-1_amd64.deb ... 544s Unpacking libpq5:amd64 (16.2-1) ... 545s Selecting previously unselected package libqhull-r8.0:amd64. 545s Preparing to unpack .../110-libqhull-r8.0_2020.2-6_amd64.deb ... 545s Unpacking libqhull-r8.0:amd64 (2020.2-6) ... 545s Selecting previously unselected package librttopo1:amd64. 545s Preparing to unpack .../111-librttopo1_1.1.0-3_amd64.deb ... 545s Unpacking librttopo1:amd64 (1.1.0-3) ... 545s Selecting previously unselected package libspatialite8:amd64. 545s Preparing to unpack .../112-libspatialite8_5.1.0-1_amd64.deb ... 545s Unpacking libspatialite8:amd64 (5.1.0-1) ... 545s Selecting previously unselected package libxerces-c3.2:amd64. 545s Preparing to unpack .../113-libxerces-c3.2_3.2.4+debian-1.1_amd64.deb ... 545s Unpacking libxerces-c3.2:amd64 (3.2.4+debian-1.1) ... 545s Selecting previously unselected package libgdal34:amd64. 545s Preparing to unpack .../114-libgdal34_3.8.4+dfsg-1_amd64.deb ... 545s Unpacking libgdal34:amd64 (3.8.4+dfsg-1) ... 545s Selecting previously unselected package libgraphite2-3:amd64. 545s Preparing to unpack .../115-libgraphite2-3_1.3.14-2_amd64.deb ... 545s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 545s Selecting previously unselected package libharfbuzz0b:amd64. 545s Preparing to unpack .../116-libharfbuzz0b_8.3.0-2_amd64.deb ... 545s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 545s Selecting previously unselected package x11-common. 545s Preparing to unpack .../117-x11-common_1%3a7.7+23ubuntu2_all.deb ... 545s Unpacking x11-common (1:7.7+23ubuntu2) ... 545s Selecting previously unselected package libice6:amd64. 545s Preparing to unpack .../118-libice6_2%3a1.0.10-1build2_amd64.deb ... 545s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 545s Selecting previously unselected package libicu-dev:amd64. 545s Preparing to unpack .../119-libicu-dev_74.2-1ubuntu1_amd64.deb ... 545s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 545s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 545s Preparing to unpack .../120-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 545s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 545s Selecting previously unselected package libjpeg8-dev:amd64. 545s Preparing to unpack .../121-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 545s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 545s Selecting previously unselected package libjpeg-dev:amd64. 545s Preparing to unpack .../122-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 545s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 545s Selecting previously unselected package libjs-bootstrap. 545s Preparing to unpack .../123-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 545s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 545s Selecting previously unselected package libjs-popper.js. 545s Preparing to unpack .../124-libjs-popper.js_1.16.1+ds-6_all.deb ... 545s Unpacking libjs-popper.js (1.16.1+ds-6) ... 545s Selecting previously unselected package libjs-bootstrap4. 545s Preparing to unpack .../125-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 545s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 546s Selecting previously unselected package libjs-d3. 546s Preparing to unpack .../126-libjs-d3_3.5.17-4_all.deb ... 546s Unpacking libjs-d3 (3.5.17-4) ... 546s Selecting previously unselected package libjs-es5-shim. 546s Preparing to unpack .../127-libjs-es5-shim_4.6.7-2_all.deb ... 546s Unpacking libjs-es5-shim (4.6.7-2) ... 546s Selecting previously unselected package libjs-highlight.js. 546s Preparing to unpack .../128-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 546s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 546s Selecting previously unselected package libjs-jquery. 546s Preparing to unpack .../129-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 546s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 546s Selecting previously unselected package libjs-jquery-datatables. 546s Preparing to unpack .../130-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 546s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 546s Selecting previously unselected package libjs-sifter.js. 546s Preparing to unpack .../131-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 546s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 546s Selecting previously unselected package libjs-microplugin.js. 546s Preparing to unpack .../132-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 546s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 546s Selecting previously unselected package libjs-jquery-selectize.js. 546s Preparing to unpack .../133-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 546s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 546s Selecting previously unselected package libjs-jquery-ui. 546s Preparing to unpack .../134-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 546s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 546s Selecting previously unselected package libjs-json. 546s Preparing to unpack .../135-libjs-json_0~20221030+~1.0.8-1_all.deb ... 546s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 546s Selecting previously unselected package libjs-prettify. 546s Preparing to unpack .../136-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 546s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 546s Selecting previously unselected package liblapack-dev:amd64. 546s Preparing to unpack .../137-liblapack-dev_3.12.0-3_amd64.deb ... 546s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 546s Selecting previously unselected package liblua5.4-0:amd64. 546s Preparing to unpack .../138-liblua5.4-0_5.4.6-3_amd64.deb ... 546s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 546s Selecting previously unselected package libncurses-dev:amd64. 546s Preparing to unpack .../139-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 546s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 546s Selecting previously unselected package libthai-data. 546s Preparing to unpack .../140-libthai-data_0.1.29-2_all.deb ... 546s Unpacking libthai-data (0.1.29-2) ... 546s Selecting previously unselected package libthai0:amd64. 546s Preparing to unpack .../141-libthai0_0.1.29-2_amd64.deb ... 546s Unpacking libthai0:amd64 (0.1.29-2) ... 546s Selecting previously unselected package libpango-1.0-0:amd64. 546s Preparing to unpack .../142-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 546s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 546s Selecting previously unselected package libpangoft2-1.0-0:amd64. 546s Preparing to unpack .../143-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 546s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 546s Selecting previously unselected package libpangocairo-1.0-0:amd64. 546s Preparing to unpack .../144-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 546s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 546s Selecting previously unselected package libpaper1:amd64. 546s Preparing to unpack .../145-libpaper1_1.1.29_amd64.deb ... 546s Unpacking libpaper1:amd64 (1.1.29) ... 546s Selecting previously unselected package libpaper-utils. 546s Preparing to unpack .../146-libpaper-utils_1.1.29_amd64.deb ... 546s Unpacking libpaper-utils (1.1.29) ... 546s Selecting previously unselected package libpcre2-16-0:amd64. 546s Preparing to unpack .../147-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 546s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 546s Selecting previously unselected package libpcre2-32-0:amd64. 546s Preparing to unpack .../148-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 546s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 546s Selecting previously unselected package libpcre2-posix3:amd64. 546s Preparing to unpack .../149-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 546s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 546s Selecting previously unselected package libpcre2-dev:amd64. 546s Preparing to unpack .../150-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 546s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 547s Selecting previously unselected package libpkgconf3:amd64. 547s Preparing to unpack .../151-libpkgconf3_1.8.1-2_amd64.deb ... 547s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 547s Selecting previously unselected package zlib1g-dev:amd64. 547s Preparing to unpack .../152-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 547s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 547s Selecting previously unselected package libpng-dev:amd64. 547s Preparing to unpack .../153-libpng-dev_1.6.43-1_amd64.deb ... 547s Unpacking libpng-dev:amd64 (1.6.43-1) ... 547s Selecting previously unselected package libreadline-dev:amd64. 547s Preparing to unpack .../154-libreadline-dev_8.2-3_amd64.deb ... 547s Unpacking libreadline-dev:amd64 (8.2-3) ... 547s Selecting previously unselected package libsm6:amd64. 547s Preparing to unpack .../155-libsm6_2%3a1.2.3-1build2_amd64.deb ... 547s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 547s Selecting previously unselected package libtcl8.6:amd64. 547s Preparing to unpack .../156-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 547s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 547s Selecting previously unselected package libxft2:amd64. 547s Preparing to unpack .../157-libxft2_2.3.6-1_amd64.deb ... 547s Unpacking libxft2:amd64 (2.3.6-1) ... 547s Selecting previously unselected package libxss1:amd64. 547s Preparing to unpack .../158-libxss1_1%3a1.2.3-1build2_amd64.deb ... 547s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 547s Selecting previously unselected package libtk8.6:amd64. 547s Preparing to unpack .../159-libtk8.6_8.6.14-1_amd64.deb ... 547s Unpacking libtk8.6:amd64 (8.6.14-1) ... 547s Selecting previously unselected package libudunits2-data. 547s Preparing to unpack .../160-libudunits2-data_2.2.28-7_all.deb ... 547s Unpacking libudunits2-data (2.2.28-7) ... 547s Selecting previously unselected package libudunits2-0. 547s Preparing to unpack .../161-libudunits2-0_2.2.28-7_amd64.deb ... 547s Unpacking libudunits2-0 (2.2.28-7) ... 547s Selecting previously unselected package libxt6:amd64. 547s Preparing to unpack .../162-libxt6_1%3a1.2.1-1.1_amd64.deb ... 547s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 547s Selecting previously unselected package zip. 547s Preparing to unpack .../163-zip_3.0-13_amd64.deb ... 547s Unpacking zip (3.0-13) ... 547s Selecting previously unselected package unzip. 547s Preparing to unpack .../164-unzip_6.0-28ubuntu3_amd64.deb ... 547s Unpacking unzip (6.0-28ubuntu3) ... 547s Selecting previously unselected package xdg-utils. 547s Preparing to unpack .../165-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 547s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 547s Selecting previously unselected package r-base-core. 547s Preparing to unpack .../166-r-base-core_4.3.2-1build1_amd64.deb ... 547s Unpacking r-base-core (4.3.2-1build1) ... 547s Selecting previously unselected package r-cran-littler. 547s Preparing to unpack .../167-r-cran-littler_0.3.19-1_amd64.deb ... 547s Unpacking r-cran-littler (0.3.19-1) ... 547s Selecting previously unselected package littler. 547s Preparing to unpack .../168-littler_0.3.19-1_all.deb ... 547s Unpacking littler (0.3.19-1) ... 547s Selecting previously unselected package node-bootstrap-sass. 547s Preparing to unpack .../169-node-bootstrap-sass_3.4.3-2_all.deb ... 547s Unpacking node-bootstrap-sass (3.4.3-2) ... 547s Selecting previously unselected package node-html5shiv. 547s Preparing to unpack .../170-node-html5shiv_3.7.3+dfsg-5_all.deb ... 547s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 547s Selecting previously unselected package node-normalize.css. 547s Preparing to unpack .../171-node-normalize.css_8.0.1-5_all.deb ... 547s Unpacking node-normalize.css (8.0.1-5) ... 548s Selecting previously unselected package pandoc-data. 548s Preparing to unpack .../172-pandoc-data_3.1.3-1_all.deb ... 548s Unpacking pandoc-data (3.1.3-1) ... 548s Selecting previously unselected package pandoc. 548s Preparing to unpack .../173-pandoc_3.1.3+ds-2_amd64.deb ... 548s Unpacking pandoc (3.1.3+ds-2) ... 548s Selecting previously unselected package pkgconf-bin. 548s Preparing to unpack .../174-pkgconf-bin_1.8.1-2_amd64.deb ... 548s Unpacking pkgconf-bin (1.8.1-2) ... 548s Selecting previously unselected package pkgconf:amd64. 548s Preparing to unpack .../175-pkgconf_1.8.1-2_amd64.deb ... 548s Unpacking pkgconf:amd64 (1.8.1-2) ... 548s Selecting previously unselected package pkg-config:amd64. 548s Preparing to unpack .../176-pkg-config_1.8.1-2_amd64.deb ... 548s Unpacking pkg-config:amd64 (1.8.1-2) ... 548s Selecting previously unselected package liblzma-dev:amd64. 548s Preparing to unpack .../177-liblzma-dev_5.4.5-0.3_amd64.deb ... 548s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 548s Selecting previously unselected package r-base-dev. 548s Preparing to unpack .../178-r-base-dev_4.3.2-1build1_all.deb ... 548s Unpacking r-base-dev (4.3.2-1build1) ... 548s Selecting previously unselected package pkg-r-autopkgtest. 548s Preparing to unpack .../179-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 548s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 548s Selecting previously unselected package r-cran-abind. 548s Preparing to unpack .../180-r-cran-abind_1.4-5-2_all.deb ... 548s Unpacking r-cran-abind (1.4-5-2) ... 549s Selecting previously unselected package r-cran-cli. 549s Preparing to unpack .../181-r-cran-cli_3.6.2-1_amd64.deb ... 549s Unpacking r-cran-cli (3.6.2-1) ... 549s Selecting previously unselected package r-cran-generics. 549s Preparing to unpack .../182-r-cran-generics_0.1.3-1_all.deb ... 549s Unpacking r-cran-generics (0.1.3-1) ... 549s Selecting previously unselected package r-cran-glue. 549s Preparing to unpack .../183-r-cran-glue_1.7.0-1_amd64.deb ... 549s Unpacking r-cran-glue (1.7.0-1) ... 549s Selecting previously unselected package r-cran-rlang. 549s Preparing to unpack .../184-r-cran-rlang_1.1.3-1_amd64.deb ... 549s Unpacking r-cran-rlang (1.1.3-1) ... 549s Selecting previously unselected package r-cran-lifecycle. 549s Preparing to unpack .../185-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 549s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 549s Selecting previously unselected package r-cran-magrittr. 549s Preparing to unpack .../186-r-cran-magrittr_2.0.3-1_amd64.deb ... 549s Unpacking r-cran-magrittr (2.0.3-1) ... 549s Selecting previously unselected package r-cran-fansi. 549s Preparing to unpack .../187-r-cran-fansi_1.0.5-1_amd64.deb ... 549s Unpacking r-cran-fansi (1.0.5-1) ... 549s Selecting previously unselected package r-cran-utf8. 549s Preparing to unpack .../188-r-cran-utf8_1.2.4-1_amd64.deb ... 549s Unpacking r-cran-utf8 (1.2.4-1) ... 549s Selecting previously unselected package r-cran-vctrs. 549s Preparing to unpack .../189-r-cran-vctrs_0.6.5-1_amd64.deb ... 549s Unpacking r-cran-vctrs (0.6.5-1) ... 549s Selecting previously unselected package r-cran-pillar. 549s Preparing to unpack .../190-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 549s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 549s Selecting previously unselected package r-cran-r6. 549s Preparing to unpack .../191-r-cran-r6_2.5.1-1_all.deb ... 549s Unpacking r-cran-r6 (2.5.1-1) ... 549s Selecting previously unselected package r-cran-pkgconfig. 549s Preparing to unpack .../192-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 549s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 549s Selecting previously unselected package r-cran-tibble. 549s Preparing to unpack .../193-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 549s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 549s Selecting previously unselected package r-cran-withr. 549s Preparing to unpack .../194-r-cran-withr_2.5.0-1_all.deb ... 549s Unpacking r-cran-withr (2.5.0-1) ... 549s Selecting previously unselected package r-cran-tidyselect. 549s Preparing to unpack .../195-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 549s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 549s Selecting previously unselected package r-cran-dplyr. 549s Preparing to unpack .../196-r-cran-dplyr_1.1.4-1_amd64.deb ... 549s Unpacking r-cran-dplyr (1.1.4-1) ... 549s Selecting previously unselected package r-cran-purrr. 549s Preparing to unpack .../197-r-cran-purrr_1.0.2-1_amd64.deb ... 549s Unpacking r-cran-purrr (1.0.2-1) ... 549s Selecting previously unselected package r-cran-mass. 549s Preparing to unpack .../198-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 549s Unpacking r-cran-mass (7.3-60.0.1-1) ... 549s Selecting previously unselected package r-cran-class. 549s Preparing to unpack .../199-r-cran-class_7.3-22-2_amd64.deb ... 549s Unpacking r-cran-class (7.3-22-2) ... 549s Selecting previously unselected package r-cran-proxy. 549s Preparing to unpack .../200-r-cran-proxy_0.4-27-1_amd64.deb ... 549s Unpacking r-cran-proxy (0.4-27-1) ... 549s Selecting previously unselected package r-cran-e1071. 549s Preparing to unpack .../201-r-cran-e1071_1.7-14-1_amd64.deb ... 549s Unpacking r-cran-e1071 (1.7-14-1) ... 549s Selecting previously unselected package r-cran-kernsmooth. 549s Preparing to unpack .../202-r-cran-kernsmooth_2.23-22-1_amd64.deb ... 549s Unpacking r-cran-kernsmooth (2.23-22-1) ... 549s Selecting previously unselected package r-cran-classint. 549s Preparing to unpack .../203-r-cran-classint_0.4-10+dfsg-1_amd64.deb ... 549s Unpacking r-cran-classint (0.4-10+dfsg-1) ... 549s Selecting previously unselected package r-cran-dbi. 549s Preparing to unpack .../204-r-cran-dbi_1.2.2-1_all.deb ... 549s Unpacking r-cran-dbi (1.2.2-1) ... 550s Selecting previously unselected package r-cran-pkgkitten. 550s Preparing to unpack .../205-r-cran-pkgkitten_0.2.3-1_all.deb ... 550s Unpacking r-cran-pkgkitten (0.2.3-1) ... 550s Selecting previously unselected package r-cran-rcpp. 550s Preparing to unpack .../206-r-cran-rcpp_1.0.12-1_amd64.deb ... 550s Unpacking r-cran-rcpp (1.0.12-1) ... 550s Selecting previously unselected package r-cran-wk. 550s Preparing to unpack .../207-r-cran-wk_0.9.1-1_amd64.deb ... 550s Unpacking r-cran-wk (0.9.1-1) ... 550s Selecting previously unselected package r-cran-s2. 550s Preparing to unpack .../208-r-cran-s2_1.1.6-1_amd64.deb ... 550s Unpacking r-cran-s2 (1.1.6-1) ... 550s Selecting previously unselected package r-cran-units. 550s Preparing to unpack .../209-r-cran-units_0.8-5+dfsg-1_amd64.deb ... 550s Unpacking r-cran-units (0.8-5+dfsg-1) ... 550s Selecting previously unselected package r-cran-sf. 550s Preparing to unpack .../210-r-cran-sf_1.0-15+dfsg-1_amd64.deb ... 550s Unpacking r-cran-sf (1.0-15+dfsg-1) ... 550s Selecting previously unselected package r-cran-areal. 550s Preparing to unpack .../211-r-cran-areal_0.1.8+dfsg-2_all.deb ... 550s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 550s Selecting previously unselected package r-cran-sys. 550s Preparing to unpack .../212-r-cran-sys_3.4.2-1_amd64.deb ... 550s Unpacking r-cran-sys (3.4.2-1) ... 550s Selecting previously unselected package r-cran-askpass. 550s Preparing to unpack .../213-r-cran-askpass_1.2.0-1_amd64.deb ... 550s Unpacking r-cran-askpass (1.2.0-1) ... 550s Selecting previously unselected package r-cran-base64enc. 550s Preparing to unpack .../214-r-cran-base64enc_0.1-3-3_amd64.deb ... 550s Unpacking r-cran-base64enc (0.1-3-3) ... 550s Selecting previously unselected package r-cran-bdsmatrix. 550s Preparing to unpack .../215-r-cran-bdsmatrix_1.3-6-1_amd64.deb ... 550s Unpacking r-cran-bdsmatrix (1.3-6-1) ... 550s Selecting previously unselected package r-cran-brio. 550s Preparing to unpack .../216-r-cran-brio_1.1.4-1_amd64.deb ... 550s Unpacking r-cran-brio (1.1.4-1) ... 550s Selecting previously unselected package r-cran-fastmap. 550s Preparing to unpack .../217-r-cran-fastmap_1.1.1-1_amd64.deb ... 550s Unpacking r-cran-fastmap (1.1.1-1) ... 550s Selecting previously unselected package r-cran-cachem. 550s Preparing to unpack .../218-r-cran-cachem_1.0.8-1_amd64.deb ... 550s Unpacking r-cran-cachem (1.0.8-1) ... 550s Selecting previously unselected package r-cran-digest. 550s Preparing to unpack .../219-r-cran-digest_0.6.34-1_amd64.deb ... 550s Unpacking r-cran-digest (0.6.34-1) ... 550s Selecting previously unselected package r-cran-ellipsis. 550s Preparing to unpack .../220-r-cran-ellipsis_0.3.2-2_amd64.deb ... 550s Unpacking r-cran-ellipsis (0.3.2-2) ... 550s Selecting previously unselected package r-cran-htmltools. 550s Preparing to unpack .../221-r-cran-htmltools_0.5.7-1_amd64.deb ... 550s Unpacking r-cran-htmltools (0.5.7-1) ... 550s Selecting previously unselected package r-cran-jquerylib. 550s Preparing to unpack .../222-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 550s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 550s Selecting previously unselected package r-cran-jsonlite. 550s Preparing to unpack .../223-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 550s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 551s Selecting previously unselected package r-cran-memoise. 551s Preparing to unpack .../224-r-cran-memoise_2.0.1-1_all.deb ... 551s Unpacking r-cran-memoise (2.0.1-1) ... 551s Selecting previously unselected package r-cran-mime. 551s Preparing to unpack .../225-r-cran-mime_0.12-1_amd64.deb ... 551s Unpacking r-cran-mime (0.12-1) ... 551s Selecting previously unselected package r-cran-fs. 551s Preparing to unpack .../226-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 551s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 551s Selecting previously unselected package r-cran-rappdirs. 551s Preparing to unpack .../227-r-cran-rappdirs_0.3.3-1_amd64.deb ... 551s Unpacking r-cran-rappdirs (0.3.3-1) ... 551s Selecting previously unselected package r-cran-sass. 551s Preparing to unpack .../228-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 551s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 551s Selecting previously unselected package r-cran-bslib. 551s Preparing to unpack .../229-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 551s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 551s Selecting previously unselected package r-cran-cairo. 551s Preparing to unpack .../230-r-cran-cairo_1.6-2-1_amd64.deb ... 551s Unpacking r-cran-cairo (1.6-2-1) ... 551s Selecting previously unselected package r-cran-ps. 551s Preparing to unpack .../231-r-cran-ps_1.7.6-1_amd64.deb ... 551s Unpacking r-cran-ps (1.7.6-1) ... 551s Selecting previously unselected package r-cran-processx. 551s Preparing to unpack .../232-r-cran-processx_3.8.3-1_amd64.deb ... 551s Unpacking r-cran-processx (3.8.3-1) ... 551s Selecting previously unselected package r-cran-callr. 551s Preparing to unpack .../233-r-cran-callr_3.7.3-2_all.deb ... 551s Unpacking r-cran-callr (3.7.3-2) ... 551s Selecting previously unselected package r-cran-cluster. 551s Preparing to unpack .../234-r-cran-cluster_2.1.6-1_amd64.deb ... 551s Unpacking r-cran-cluster (2.1.6-1) ... 551s Selecting previously unselected package r-cran-clue. 551s Preparing to unpack .../235-r-cran-clue_0.3-65-1_amd64.deb ... 551s Unpacking r-cran-clue (0.3-65-1) ... 551s Selecting previously unselected package r-cran-codetools. 551s Preparing to unpack .../236-r-cran-codetools_0.2-19-1_all.deb ... 551s Unpacking r-cran-codetools (0.2-19-1) ... 551s Selecting previously unselected package r-cran-collapse. 551s Preparing to unpack .../237-r-cran-collapse_2.0.10-1_amd64.deb ... 551s Unpacking r-cran-collapse (2.0.10-1) ... 551s Selecting previously unselected package r-cran-colorspace. 551s Preparing to unpack .../238-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 551s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 551s Selecting previously unselected package r-cran-commonmark. 551s Preparing to unpack .../239-r-cran-commonmark_1.9.1-1_amd64.deb ... 551s Unpacking r-cran-commonmark (1.9.1-1) ... 551s Selecting previously unselected package r-cran-lazyeval. 551s Preparing to unpack .../240-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 551s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 551s Selecting previously unselected package r-cran-rex. 551s Preparing to unpack .../241-r-cran-rex_1.2.1-1_all.deb ... 551s Unpacking r-cran-rex (1.2.1-1) ... 551s Selecting previously unselected package r-cran-curl. 551s Preparing to unpack .../242-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 551s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 551s Selecting previously unselected package r-cran-openssl. 551s Preparing to unpack .../243-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 551s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 551s Selecting previously unselected package r-cran-httr. 551s Preparing to unpack .../244-r-cran-httr_1.4.7+dfsg-1_all.deb ... 551s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 551s Selecting previously unselected package r-cran-crayon. 551s Preparing to unpack .../245-r-cran-crayon_1.5.2-1_all.deb ... 551s Unpacking r-cran-crayon (1.5.2-1) ... 552s Selecting previously unselected package r-cran-yaml. 552s Preparing to unpack .../246-r-cran-yaml_2.3.8-1_amd64.deb ... 552s Unpacking r-cran-yaml (2.3.8-1) ... 552s Selecting previously unselected package r-cran-covr. 552s Preparing to unpack .../247-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 552s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 552s Selecting previously unselected package r-cran-cpp11. 552s Preparing to unpack .../248-r-cran-cpp11_0.4.7-1_all.deb ... 552s Unpacking r-cran-cpp11 (0.4.7-1) ... 552s Selecting previously unselected package r-cran-deldir. 552s Preparing to unpack .../249-r-cran-deldir_2.0-4-1_amd64.deb ... 552s Unpacking r-cran-deldir (2.0-4-1) ... 552s Selecting previously unselected package r-cran-desc. 552s Preparing to unpack .../250-r-cran-desc_1.4.3-1_all.deb ... 552s Unpacking r-cran-desc (1.4.3-1) ... 552s Selecting previously unselected package r-cran-diffobj. 552s Preparing to unpack .../251-r-cran-diffobj_0.3.5-1_amd64.deb ... 552s Unpacking r-cran-diffobj (0.3.5-1) ... 552s Selecting previously unselected package r-cran-evaluate. 552s Preparing to unpack .../252-r-cran-evaluate_0.23-1_all.deb ... 552s Unpacking r-cran-evaluate (0.23-1) ... 552s Selecting previously unselected package r-cran-farver. 552s Preparing to unpack .../253-r-cran-farver_2.1.1-1_amd64.deb ... 552s Unpacking r-cran-farver (2.1.1-1) ... 552s Selecting previously unselected package r-cran-fnn. 552s Preparing to unpack .../254-r-cran-fnn_1.1.4-1_amd64.deb ... 552s Unpacking r-cran-fnn (1.1.4-1) ... 552s Selecting previously unselected package r-cran-fontawesome. 552s Preparing to unpack .../255-r-cran-fontawesome_0.5.2-1_all.deb ... 552s Unpacking r-cran-fontawesome (0.5.2-1) ... 552s Selecting previously unselected package r-cran-formula. 552s Preparing to unpack .../256-r-cran-formula_1.2-5-1_all.deb ... 552s Unpacking r-cran-formula (1.2-5-1) ... 552s Selecting previously unselected package r-cran-globals. 552s Preparing to unpack .../257-r-cran-globals_0.16.2-1_all.deb ... 552s Unpacking r-cran-globals (0.16.2-1) ... 552s Selecting previously unselected package r-cran-listenv. 552s Preparing to unpack .../258-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 552s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 552s Selecting previously unselected package r-cran-parallelly. 552s Preparing to unpack .../259-r-cran-parallelly_1.37.1-1_amd64.deb ... 552s Unpacking r-cran-parallelly (1.37.1-1) ... 552s Selecting previously unselected package r-cran-future. 552s Preparing to unpack .../260-r-cran-future_1.33.1+dfsg-1_all.deb ... 552s Unpacking r-cran-future (1.33.1+dfsg-1) ... 552s Selecting previously unselected package r-cran-future.apply. 552s Preparing to unpack .../261-r-cran-future.apply_1.11.1+dfsg-1_all.deb ... 552s Unpacking r-cran-future.apply (1.11.1+dfsg-1) ... 552s Selecting previously unselected package r-cran-gtable. 552s Preparing to unpack .../262-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 552s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 552s Selecting previously unselected package r-cran-isoband. 552s Preparing to unpack .../263-r-cran-isoband_0.2.7-1_amd64.deb ... 552s Unpacking r-cran-isoband (0.2.7-1) ... 552s Selecting previously unselected package r-cran-lattice. 552s Preparing to unpack .../264-r-cran-lattice_0.22-5-1_amd64.deb ... 552s Unpacking r-cran-lattice (0.22-5-1) ... 552s Selecting previously unselected package r-cran-nlme. 552s Preparing to unpack .../265-r-cran-nlme_3.1.164-1_amd64.deb ... 552s Unpacking r-cran-nlme (3.1.164-1) ... 552s Selecting previously unselected package r-cran-matrix. 552s Preparing to unpack .../266-r-cran-matrix_1.6-5-1_amd64.deb ... 552s Unpacking r-cran-matrix (1.6-5-1) ... 552s Selecting previously unselected package r-cran-mgcv. 553s Preparing to unpack .../267-r-cran-mgcv_1.9-1-1_amd64.deb ... 553s Unpacking r-cran-mgcv (1.9-1-1) ... 553s Selecting previously unselected package r-cran-labeling. 553s Preparing to unpack .../268-r-cran-labeling_0.4.3-1_all.deb ... 553s Unpacking r-cran-labeling (0.4.3-1) ... 553s Selecting previously unselected package r-cran-munsell. 553s Preparing to unpack .../269-r-cran-munsell_0.5.0-2build1_all.deb ... 553s Unpacking r-cran-munsell (0.5.0-2build1) ... 553s Selecting previously unselected package r-cran-rcolorbrewer. 553s Preparing to unpack .../270-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 553s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 553s Selecting previously unselected package r-cran-viridislite. 553s Preparing to unpack .../271-r-cran-viridislite_0.4.2-2_all.deb ... 553s Unpacking r-cran-viridislite (0.4.2-2) ... 553s Selecting previously unselected package r-cran-scales. 553s Preparing to unpack .../272-r-cran-scales_1.3.0-1_all.deb ... 553s Unpacking r-cran-scales (1.3.0-1) ... 553s Selecting previously unselected package r-cran-ggplot2. 553s Preparing to unpack .../273-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 553s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 553s Selecting previously unselected package r-cran-tweenr. 553s Preparing to unpack .../274-r-cran-tweenr_2.0.2-1_amd64.deb ... 553s Unpacking r-cran-tweenr (2.0.2-1) ... 553s Selecting previously unselected package r-cran-polyclip. 553s Preparing to unpack .../275-r-cran-polyclip_1.10-6-1_amd64.deb ... 553s Unpacking r-cran-polyclip (1.10-6-1) ... 553s Selecting previously unselected package r-cran-systemfonts. 553s Preparing to unpack .../276-r-cran-systemfonts_1.0.5-1_amd64.deb ... 553s Unpacking r-cran-systemfonts (1.0.5-1) ... 553s Selecting previously unselected package r-cran-rcppeigen. 553s Preparing to unpack .../277-r-cran-rcppeigen_0.3.3.9.4-1_amd64.deb ... 553s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 553s Selecting previously unselected package r-cran-ggforce. 553s Preparing to unpack .../278-r-cran-ggforce_0.4.1-1_amd64.deb ... 553s Unpacking r-cran-ggforce (0.4.1-1) ... 553s Selecting previously unselected package r-cran-stringi. 553s Preparing to unpack .../279-r-cran-stringi_1.8.3-1_amd64.deb ... 553s Unpacking r-cran-stringi (1.8.3-1) ... 553s Selecting previously unselected package r-cran-stringr. 553s Preparing to unpack .../280-r-cran-stringr_1.5.1-1_all.deb ... 553s Unpacking r-cran-stringr (1.5.1-1) ... 553s Selecting previously unselected package r-cran-ggthemes. 553s Preparing to unpack .../281-r-cran-ggthemes_5.1.0-1_all.deb ... 553s Unpacking r-cran-ggthemes (5.1.0-1) ... 553s Selecting previously unselected package r-cran-goftest. 553s Preparing to unpack .../282-r-cran-goftest_1.2-3-1_amd64.deb ... 553s Unpacking r-cran-goftest (1.2-3-1) ... 553s Selecting previously unselected package r-cran-gridextra. 553s Preparing to unpack .../283-r-cran-gridextra_2.3-3build1_all.deb ... 553s Unpacking r-cran-gridextra (2.3-3build1) ... 553s Selecting previously unselected package r-cran-xfun. 553s Preparing to unpack .../284-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 553s Unpacking r-cran-xfun (0.41+dfsg-1) ... 553s Selecting previously unselected package r-cran-highr. 553s Preparing to unpack .../285-r-cran-highr_0.10+dfsg-1_all.deb ... 553s Unpacking r-cran-highr (0.10+dfsg-1) ... 553s Selecting previously unselected package r-cran-later. 553s Preparing to unpack .../286-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 553s Unpacking r-cran-later (1.3.2+dfsg-1) ... 553s Selecting previously unselected package r-cran-promises. 553s Preparing to unpack .../287-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 553s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 554s Selecting previously unselected package r-cran-httpuv. 554s Preparing to unpack .../288-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 554s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 554s Selecting previously unselected package r-cran-intervals. 554s Preparing to unpack .../289-r-cran-intervals_0.15.4-1_amd64.deb ... 554s Unpacking r-cran-intervals (0.15.4-1) ... 554s Selecting previously unselected package libjs-mathjax. 554s Preparing to unpack .../290-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 554s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 554s Selecting previously unselected package r-cran-knitr. 554s Preparing to unpack .../291-r-cran-knitr_1.45+dfsg-1_all.deb ... 554s Unpacking r-cran-knitr (1.45+dfsg-1) ... 554s Selecting previously unselected package r-cran-zoo. 554s Preparing to unpack .../292-r-cran-zoo_1.8-12-2_amd64.deb ... 554s Unpacking r-cran-zoo (1.8-12-2) ... 554s Selecting previously unselected package r-cran-lmtest. 554s Preparing to unpack .../293-r-cran-lmtest_0.9.40-1_amd64.deb ... 554s Unpacking r-cran-lmtest (0.9.40-1) ... 554s Selecting previously unselected package r-cran-lwgeom. 555s Preparing to unpack .../294-r-cran-lwgeom_0.2-13-3_amd64.deb ... 555s Unpacking r-cran-lwgeom (0.2-13-3) ... 555s Selecting previously unselected package r-cran-maps. 555s Preparing to unpack .../295-r-cran-maps_3.4.2-1_amd64.deb ... 555s Unpacking r-cran-maps (3.4.2-1) ... 555s Selecting previously unselected package r-cran-mapdata. 555s Preparing to unpack .../296-r-cran-mapdata_2.3.1-1_amd64.deb ... 555s Unpacking r-cran-mapdata (2.3.1-1) ... 555s Selecting previously unselected package r-cran-misctools. 555s Preparing to unpack .../297-r-cran-misctools_0.6-28-1_all.deb ... 555s Unpacking r-cran-misctools (0.6-28-1) ... 555s Selecting previously unselected package r-cran-sandwich. 555s Preparing to unpack .../298-r-cran-sandwich_3.1-0-1_all.deb ... 555s Unpacking r-cran-sandwich (3.1-0-1) ... 555s Selecting previously unselected package r-cran-maxlik. 555s Preparing to unpack .../299-r-cran-maxlik_1.5-2-1_all.deb ... 555s Unpacking r-cran-maxlik (1.5-2-1) ... 555s Selecting previously unselected package r-cran-rnetcdf. 555s Preparing to unpack .../300-r-cran-rnetcdf_2.9-1-1_amd64.deb ... 555s Unpacking r-cran-rnetcdf (2.9-1-1) ... 555s Selecting previously unselected package r-cran-tidyr. 555s Preparing to unpack .../301-r-cran-tidyr_1.3.1-1_amd64.deb ... 555s Unpacking r-cran-tidyr (1.3.1-1) ... 555s Selecting previously unselected package r-cran-ncmeta. 555s Preparing to unpack .../302-r-cran-ncmeta_0.3.6-1_all.deb ... 555s Unpacking r-cran-ncmeta (0.3.6-1) ... 555s Selecting previously unselected package r-cran-stars. 555s Preparing to unpack .../303-r-cran-stars_0.6-4-1_all.deb ... 555s Unpacking r-cran-stars (0.6-4-1) ... 555s Selecting previously unselected package r-cran-ncdfgeom. 555s Preparing to unpack .../304-r-cran-ncdfgeom_1.1.6+dfsg-1_all.deb ... 555s Unpacking r-cran-ncdfgeom (1.1.6+dfsg-1) ... 555s Selecting previously unselected package r-cran-pbapply. 555s Preparing to unpack .../305-r-cran-pbapply_1.7-2-1_all.deb ... 555s Unpacking r-cran-pbapply (1.7-2-1) ... 555s Selecting previously unselected package r-cran-pcict. 555s Preparing to unpack .../306-r-cran-pcict_0.5-4.4-1_amd64.deb ... 555s Unpacking r-cran-pcict (0.5-4.4-1) ... 555s Selecting previously unselected package r-cran-pkgbuild. 555s Preparing to unpack .../307-r-cran-pkgbuild_1.4.3-1_all.deb ... 555s Unpacking r-cran-pkgbuild (1.4.3-1) ... 555s Selecting previously unselected package r-cran-rprojroot. 555s Preparing to unpack .../308-r-cran-rprojroot_2.0.4-1_all.deb ... 555s Unpacking r-cran-rprojroot (2.0.4-1) ... 555s Selecting previously unselected package r-cran-pkgload. 555s Preparing to unpack .../309-r-cran-pkgload_1.3.4-1_all.deb ... 555s Unpacking r-cran-pkgload (1.3.4-1) ... 555s Selecting previously unselected package r-cran-rbibutils. 555s Preparing to unpack .../310-r-cran-rbibutils_2.2.16-1_amd64.deb ... 555s Unpacking r-cran-rbibutils (2.2.16-1) ... 556s Selecting previously unselected package r-cran-rdpack. 556s Preparing to unpack .../311-r-cran-rdpack_2.6-1_all.deb ... 556s Unpacking r-cran-rdpack (2.6-1) ... 556s Selecting previously unselected package r-cran-plm. 556s Preparing to unpack .../312-r-cran-plm_2.6-3-1_all.deb ... 556s Unpacking r-cran-plm (2.6-3-1) ... 556s Selecting previously unselected package r-cran-praise. 556s Preparing to unpack .../313-r-cran-praise_1.0.0-4build1_all.deb ... 556s Unpacking r-cran-praise (1.0.0-4build1) ... 556s Selecting previously unselected package r-cran-randomforest. 556s Preparing to unpack .../314-r-cran-randomforest_4.7-1.1-1_amd64.deb ... 556s Unpacking r-cran-randomforest (4.7-1.1-1) ... 556s Selecting previously unselected package r-cran-sp. 556s Preparing to unpack .../315-r-cran-sp_1%3a2.1-2+dfsg-1_amd64.deb ... 556s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 556s Selecting previously unselected package r-cran-terra. 556s Preparing to unpack .../316-r-cran-terra_1.7-65-1_amd64.deb ... 556s Unpacking r-cran-terra (1.7-65-1) ... 556s Selecting previously unselected package r-cran-raster. 556s Preparing to unpack .../317-r-cran-raster_3.6-26-1_amd64.deb ... 556s Unpacking r-cran-raster (3.6-26-1) ... 556s Selecting previously unselected package r-cran-rematch2. 556s Preparing to unpack .../318-r-cran-rematch2_2.1.2-2build1_all.deb ... 556s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 556s Selecting previously unselected package r-cran-tinytex. 556s Preparing to unpack .../319-r-cran-tinytex_0.49-1_all.deb ... 556s Unpacking r-cran-tinytex (0.49-1) ... 556s Selecting previously unselected package libjs-modernizr. 556s Preparing to unpack .../320-libjs-modernizr_2.6.2+ds1-5_all.deb ... 556s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 556s Selecting previously unselected package r-cran-xtable. 556s Preparing to unpack .../321-r-cran-xtable_1%3a1.8-4-2_all.deb ... 556s Unpacking r-cran-xtable (1:1.8-4-2) ... 556s Selecting previously unselected package r-cran-sourcetools. 556s Preparing to unpack .../322-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 556s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 556s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 556s Preparing to unpack .../323-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 556s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 556s Selecting previously unselected package r-cran-shiny. 556s Preparing to unpack .../324-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 556s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 556s Selecting previously unselected package r-cran-rmarkdown. 556s Preparing to unpack .../325-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 556s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 556s Selecting previously unselected package r-cran-survival. 556s Preparing to unpack .../326-r-cran-survival_3.5-8-1_amd64.deb ... 556s Unpacking r-cran-survival (3.5-8-1) ... 556s Selecting previously unselected package r-cran-rpart. 556s Preparing to unpack .../327-r-cran-rpart_4.1.23-1_amd64.deb ... 556s Unpacking r-cran-rpart (4.1.23-1) ... 556s Selecting previously unselected package r-cran-xts. 556s Preparing to unpack .../328-r-cran-xts_0.13.2-1_amd64.deb ... 556s Unpacking r-cran-xts (0.13.2-1) ... 557s Selecting previously unselected package r-cran-spacetime. 557s Preparing to unpack .../329-r-cran-spacetime_1.3-1-1_all.deb ... 557s Unpacking r-cran-spacetime (1.3-1-1) ... 557s Selecting previously unselected package r-cran-spatstat.utils. 557s Preparing to unpack .../330-r-cran-spatstat.utils_3.0-4-1_amd64.deb ... 557s Unpacking r-cran-spatstat.utils (3.0-4-1) ... 557s Selecting previously unselected package r-cran-spatstat.data. 557s Preparing to unpack .../331-r-cran-spatstat.data_3.0-4-1_all.deb ... 557s Unpacking r-cran-spatstat.data (3.0-4-1) ... 557s Selecting previously unselected package r-cran-spatstat.geom. 557s Preparing to unpack .../332-r-cran-spatstat.geom_3.2-8-1_amd64.deb ... 557s Unpacking r-cran-spatstat.geom (3.2-8-1) ... 557s Selecting previously unselected package r-cran-spatstat.random. 557s Preparing to unpack .../333-r-cran-spatstat.random_3.2-2-1_amd64.deb ... 557s Unpacking r-cran-spatstat.random (3.2-2-1) ... 557s Selecting previously unselected package r-cran-tensor. 557s Preparing to unpack .../334-r-cran-tensor_1.5-4_all.deb ... 557s Unpacking r-cran-tensor (1.5-4) ... 557s Selecting previously unselected package r-cran-spatstat.sparse. 557s Preparing to unpack .../335-r-cran-spatstat.sparse_3.0-3-1_amd64.deb ... 557s Unpacking r-cran-spatstat.sparse (3.0-3-1) ... 557s Selecting previously unselected package r-cran-spatstat.explore. 557s Preparing to unpack .../336-r-cran-spatstat.explore_3.2-5-1_amd64.deb ... 557s Unpacking r-cran-spatstat.explore (3.2-5-1) ... 557s Selecting previously unselected package r-cran-spatstat.model. 557s Preparing to unpack .../337-r-cran-spatstat.model_3.2-8-1_amd64.deb ... 557s Unpacking r-cran-spatstat.model (3.2-8-1) ... 557s Selecting previously unselected package r-cran-spatstat.linnet. 557s Preparing to unpack .../338-r-cran-spatstat.linnet_3.1-3-1_amd64.deb ... 557s Unpacking r-cran-spatstat.linnet (3.1-3-1) ... 557s Selecting previously unselected package r-cran-spatstat. 557s Preparing to unpack .../339-r-cran-spatstat_3.0-7-1_amd64.deb ... 557s Unpacking r-cran-spatstat (3.0-7-1) ... 557s Selecting previously unselected package r-cran-waldo. 557s Preparing to unpack .../340-r-cran-waldo_0.5.2-1build1_all.deb ... 557s Unpacking r-cran-waldo (0.5.2-1build1) ... 557s Selecting previously unselected package r-cran-testthat. 557s Preparing to unpack .../341-r-cran-testthat_3.2.1-1_amd64.deb ... 557s Unpacking r-cran-testthat (3.2.1-1) ... 557s Selecting previously unselected package r-cran-viridis. 557s Preparing to unpack .../342-r-cran-viridis_0.6.5-1_all.deb ... 557s Unpacking r-cran-viridis (0.6.5-1) ... 557s Setting up libjs-json (0~20221030+~1.0.8-1) ... 557s Setting up javascript-common (11+nmu1) ... 557s Setting up libgraphite2-3:amd64 (1.3.14-2) ... 557s Setting up liblcms2-2:amd64 (2.14-2) ... 557s Setting up libpixman-1-0:amd64 (0.42.2-1) ... 557s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ... 557s Setting up libpaper1:amd64 (1.1.29) ... 557s 557s Creating config file /etc/papersize with new version 557s Setting up mysql-common (5.8+1.1.0) ... 557s update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode 557s Setting up libmysqlclient21:amd64 (8.0.36-1) ... 557s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 557s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 557s Setting up libxerces-c3.2:amd64 (3.2.4+debian-1.1) ... 557s Setting up proj-data (9.3.1-1) ... 557s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 557s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 557s Setting up libdatrie1:amd64 (0.2.13-3) ... 557s Setting up libjs-popper.js (1.16.1+ds-6) ... 557s Setting up libogdi4.1 (4.1.1+ds-1) ... 557s Setting up libminizip1:amd64 (1:1.3.dfsg-3ubuntu1) ... 557s Setting up libxcb-render0:amd64 (1.15-1) ... 557s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 557s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 557s Setting up unzip (6.0-28ubuntu3) ... 557s Setting up x11-common (1:7.7+23ubuntu2) ... 558s Setting up node-html5shiv (3.7.3+dfsg-5) ... 558s Setting up libpq5:amd64 (16.2-1) ... 558s Setting up libdeflate0:amd64 (1.19-1) ... 558s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 558s Setting up libqhull-r8.0:amd64 (2020.2-6) ... 558s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 558s Setting up libxcb-shm0:amd64 (1.15-1) ... 558s Setting up libpaper-utils (1.1.29) ... 558s Setting up libcfitsio10:amd64 (4.3.1-1) ... 558s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ... 558s Setting up libjs-modernizr (2.6.2+ds1-5) ... 558s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ... 558s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 558s Setting up libaec0:amd64 (1.1.2-1) ... 558s Setting up gdal-data (3.8.4+dfsg-1) ... 558s Setting up libsnappy1v5:amd64 (1.1.10-1) ... 558s Setting up libjs-es5-shim (4.6.7-2) ... 558s Setting up libgeos3.12.1:amd64 (3.12.1-1) ... 558s Setting up zip (3.0-13) ... 558s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 558s Setting up libblas3:amd64 (3.12.0-3) ... 558s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 558s Setting up libpkgconf3:amd64 (1.8.1-2) ... 558s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 558s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ... 558s Setting up libjs-d3 (3.5.17-4) ... 558s Setting up fonts-dejavu-mono (2.37-8) ... 558s Setting up libmpc3:amd64 (1.3.1-1) ... 558s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ... 558s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... 558s Setting up icu-devtools (74.2-1ubuntu1) ... 558s Setting up libgeos-c1v5:amd64 (3.12.1-1) ... 558s Setting up fonts-dejavu-core (2.37-8) ... 558s Setting up unixodbc-common (2.3.12-1) ... 558s Setting up pkgconf-bin (1.8.1-2) ... 558s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 558s Setting up libltdl7:amd64 (2.4.7-7) ... 558s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 558s Setting up libwebp7:amd64 (1.3.2-0.4) ... 558s Setting up liblzma-dev:amd64 (5.4.5-0.3) ... 558s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ... 558s Setting up libgif7:amd64 (5.2.1-2.5) ... 558s Setting up libodbc2:amd64 (2.3.12-1) ... 558s Setting up liburiparser1:amd64 (0.9.7+dfsg-2) ... 558s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 558s Setting up librttopo1:amd64 (1.1.0-3) ... 558s Setting up libudunits2-data (2.2.28-7) ... 558s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 558s Setting up libdav1d7:amd64 (1.4.0-1) ... 558s Setting up libfreexl1:amd64 (2.0.0-1) ... 558s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 558s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 558s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 558s Setting up libfyba0:amd64 (4.1.1-8) ... 558s Setting up libkmlbase1:amd64 (1.3.0-10) ... 558s Setting up libblosc1:amd64 (1.21.5+ds-1) ... 558s Setting up liblua5.4-0:amd64 (5.4.6-3) ... 558s Setting up libopenjp2-7:amd64 (2.5.0-2) ... 558s Setting up libharfbuzz0b:amd64 (8.3.0-2) ... 558s Setting up libthai-data (0.1.29-2) ... 558s Setting up node-bootstrap-sass (3.4.3-2) ... 558s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 558s Setting up libxss1:amd64 (1:1.2.3-1build2) ... 558s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 558s Setting up pandoc-data (3.1.3-1) ... 558s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ... 558s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 558s Setting up libisl23:amd64 (0.26-3) ... 558s Setting up libde265-0:amd64 (1.0.15-1) ... 558s Setting up libc-dev-bin (2.39-0ubuntu6) ... 558s Setting up node-normalize.css (8.0.1-5) ... 558s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 558s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 558s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 558s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 558s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 558s Setting up libblas-dev:amd64 (3.12.0-3) ... 558s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 558s Setting up libsz2:amd64 (1.1.2-1) ... 558s Setting up dctrl-tools (2.24-3build2) ... 558s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 558s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 558s Setting up gdal-plugins:amd64 (3.8.4+dfsg-1) ... 558s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 558s Setting up libkmldom1:amd64 (1.3.0-10) ... 558s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 558s Setting up libice6:amd64 (2:1.0.10-1build2) ... 558s Setting up libodbcinst2:amd64 (2.3.12-1) ... 558s Setting up liblapack3:amd64 (3.12.0-3) ... 558s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 558s Setting up libudunits2-0 (2.2.28-7) ... 558s Setting up libkmlengine1:amd64 (1.3.0-10) ... 558s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 558s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 558s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 558s Setting up libarpack2:amd64 (3.9.1-1) ... 558s Setting up libsuperlu6:amd64 (6.0.1+dfsg1-1) ... 558s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 558s Setting up pkgconf:amd64 (1.8.1-2) ... 558s Setting up libthai0:amd64 (0.1.29-2) ... 558s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 558s Setting up pandoc (3.1.3+ds-2) ... 558s Setting up liblapack-dev:amd64 (3.12.0-3) ... 558s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 558s Setting up pkg-config:amd64 (1.8.1-2) ... 558s Setting up libhdf4-0-alt (4.2.16-3) ... 558s Setting up libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 558s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 558s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 558s Setting up libc6-dev:amd64 (2.39-0ubuntu6) ... 558s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 558s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 558s Setting up libsm6:amd64 (2:1.2.3-1build2) ... 558s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ... 558s Setting up libarmadillo12 (1:12.6.7+dfsg-1) ... 558s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 558s Setting up libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 558s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 558s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 558s Setting up fontconfig (2.15.0-1ubuntu1) ... 560s Regenerating fonts cache... done. 560s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 560s Setting up libxft2:amd64 (2.3.6-1) ... 560s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 560s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ... 560s Setting up cpp-13 (13.2.0-17ubuntu2) ... 560s Setting up libproj25:amd64 (9.3.1-1) ... 560s Setting up libpoppler134:amd64 (24.02.0-1ubuntu2) ... 560s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 560s Setting up libtk8.6:amd64 (8.6.14-1) ... 560s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... 560s Setting up libreadline-dev:amd64 (8.2-3) ... 560s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 560s Setting up libcairo2:amd64 (1.18.0-1) ... 560s Setting up libgeotiff5:amd64 (1.7.1-5) ... 560s Setting up libspatialite8:amd64 (5.1.0-1) ... 560s Setting up gcc-13 (13.2.0-17ubuntu2) ... 560s Setting up libxt6:amd64 (1:1.2.1-1.1) ... 560s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 560s Setting up libnetcdf19:amd64 (1:4.9.2-3ubuntu1) ... 560s Setting up cpp (4:13.2.0-7ubuntu1) ... 560s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 560s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 560s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 560s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 560s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 560s Setting up libpng-dev:amd64 (1.6.43-1) ... 560s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 560s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 560s Setting up gcc (4:13.2.0-7ubuntu1) ... 560s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 560s Setting up r-base-core (4.3.2-1build1) ... 560s 560s Creating config file /etc/R/Renviron with new version 561s Setting up r-cran-crayon (1.5.2-1) ... 561s Setting up r-cran-labeling (0.4.3-1) ... 561s Setting up r-cran-sourcetools (0.1.7-1-1) ... 561s Setting up r-cran-lattice (0.22-5-1) ... 561s Setting up r-cran-ps (1.7.6-1) ... 561s Setting up r-cran-nlme (3.1.164-1) ... 561s Setting up r-cran-farver (2.1.1-1) ... 561s Setting up r-cran-pbapply (1.7-2-1) ... 561s Setting up r-cran-formula (1.2-5-1) ... 561s Setting up r-cran-intervals (0.15.4-1) ... 561s Setting up r-cran-spatstat.utils (3.0-4-1) ... 561s Setting up r-cran-viridislite (0.4.2-2) ... 561s Setting up r-cran-cluster (2.1.6-1) ... 561s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 561s Setting up r-cran-tensor (1.5-4) ... 561s Setting up r-cran-lazyeval (0.2.2-1build1) ... 561s Setting up r-cran-wk (0.9.1-1) ... 561s Setting up r-cran-commonmark (1.9.1-1) ... 561s Setting up r-cran-proxy (0.4-27-1) ... 561s Setting up r-cran-r6 (2.5.1-1) ... 561s Setting up r-cran-pkgkitten (0.2.3-1) ... 561s Setting up r-cran-magrittr (2.0.3-1) ... 561s Setting up r-cran-rappdirs (0.3.3-1) ... 561s Setting up r-cran-littler (0.3.19-1) ... 561s Setting up r-cran-fs (1.6.3+dfsg-1) ... 561s Setting up r-cran-rcpp (1.0.12-1) ... 561s Setting up r-cran-curl (5.2.0+dfsg-1) ... 561s Setting up r-cran-codetools (0.2-19-1) ... 561s Setting up g++-13 (13.2.0-17ubuntu2) ... 561s Setting up r-cran-brio (1.1.4-1) ... 561s Setting up r-cran-diffobj (0.3.5-1) ... 561s Setting up r-cran-maps (3.4.2-1) ... 561s Setting up r-cran-rlang (1.1.3-1) ... 561s Setting up r-cran-listenv (0.9.1+dfsg-1) ... 561s Setting up littler (0.3.19-1) ... 561s Setting up r-cran-xfun (0.41+dfsg-1) ... 561s Setting up r-cran-sys (3.4.2-1) ... 561s Setting up r-cran-withr (2.5.0-1) ... 561s Setting up r-cran-processx (3.8.3-1) ... 561s Setting up r-cran-mime (0.12-1) ... 561s Setting up r-cran-praise (1.0.0-4build1) ... 561s Setting up r-cran-generics (0.1.3-1) ... 561s Setting up r-cran-base64enc (0.1-3-3) ... 561s Setting up r-cran-abind (1.4-5-2) ... 561s Setting up r-cran-s2 (1.1.6-1) ... 561s Setting up r-cran-digest (0.6.34-1) ... 561s Setting up r-cran-yaml (2.3.8-1) ... 561s Setting up r-cran-evaluate (0.23-1) ... 561s Setting up r-cran-dbi (1.2.2-1) ... 561s Setting up r-cran-highr (0.10+dfsg-1) ... 561s Setting up r-cran-fansi (1.0.5-1) ... 561s Setting up r-cran-pcict (0.5-4.4-1) ... 561s Setting up r-cran-mass (7.3-60.0.1-1) ... 561s Setting up r-cran-cairo (1.6-2-1) ... 561s Setting up r-cran-mapdata (2.3.1-1) ... 561s Setting up r-cran-collapse (2.0.10-1) ... 561s Setting up r-cran-bdsmatrix (1.3-6-1) ... 561s Setting up r-cran-glue (1.7.0-1) ... 561s Setting up r-cran-xtable (1:1.8-4-2) ... 561s Setting up r-cran-polyclip (1.10-6-1) ... 561s Setting up r-cran-clue (0.3-65-1) ... 561s Setting up r-cran-cli (3.6.2-1) ... 561s Setting up gfortran (4:13.2.0-7ubuntu1) ... 561s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 561s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 561s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 561s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 561s Setting up r-cran-rbibutils (2.2.16-1) ... 561s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 561s Setting up r-cran-rprojroot (2.0.4-1) ... 561s Setting up r-cran-fnn (1.1.4-1) ... 561s Setting up r-cran-deldir (2.0-4-1) ... 561s Setting up r-cran-goftest (1.2-3-1) ... 561s Setting up r-cran-randomforest (4.7-1.1-1) ... 561s Setting up r-cran-askpass (1.2.0-1) ... 561s Setting up r-cran-fastmap (1.1.1-1) ... 561s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 561s Setting up r-cran-rnetcdf (2.9-1-1) ... 561s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 561s Setting up r-cran-sp (1:2.1-2+dfsg-1) ... 561s Setting up r-cran-utf8 (1.2.4-1) ... 561s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 561s Setting up r-cran-parallelly (1.37.1-1) ... 561s Setting up r-cran-stringi (1.8.3-1) ... 561s Setting up r-cran-rex (1.2.1-1) ... 561s Setting up r-cran-cpp11 (0.4.7-1) ... 561s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 561s Setting up r-cran-isoband (0.2.7-1) ... 561s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 561s Setting up r-cran-zoo (1.8-12-2) ... 561s Setting up r-cran-units (0.8-5+dfsg-1) ... 561s Setting up r-cran-later (1.3.2+dfsg-1) ... 561s Setting up r-cran-matrix (1.6-5-1) ... 561s Setting up r-cran-spatstat.sparse (3.0-3-1) ... 561s Setting up r-cran-tinytex (0.49-1) ... 561s Setting up r-cran-kernsmooth (2.23-22-1) ... 561s Setting up r-cran-knitr (1.45+dfsg-1) ... 561s Setting up r-cran-mgcv (1.9-1-1) ... 561s Setting up g++ (4:13.2.0-7ubuntu1) ... 561s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 561s Setting up r-cran-cachem (1.0.8-1) ... 561s Setting up r-cran-lmtest (0.9.40-1) ... 561s Setting up build-essential (12.10ubuntu1) ... 561s Setting up r-cran-globals (0.16.2-1) ... 561s Setting up r-cran-vctrs (0.6.5-1) ... 561s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 561s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 561s Setting up r-cran-ellipsis (0.3.2-2) ... 561s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 561s Setting up r-base-dev (4.3.2-1build1) ... 561s Setting up r-cran-misctools (0.6-28-1) ... 561s Setting up r-cran-stringr (1.5.1-1) ... 561s Setting up r-cran-class (7.3-22-2) ... 561s Setting up r-cran-callr (3.7.3-2) ... 561s Setting up r-cran-desc (1.4.3-1) ... 561s Setting up r-cran-munsell (0.5.0-2build1) ... 561s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 561s Setting up r-cran-sandwich (3.1-0-1) ... 561s Setting up r-cran-survival (3.5-8-1) ... 561s Setting up r-cran-xts (0.13.2-1) ... 561s Setting up r-cran-rdpack (2.6-1) ... 561s Setting up r-cran-tweenr (2.0.2-1) ... 561s Setting up r-cran-future (1.33.1+dfsg-1) ... 561s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 561s Setting up r-cran-future.apply (1.11.1+dfsg-1) ... 561s Setting up r-cran-systemfonts (1.0.5-1) ... 561s Setting up r-cran-httr (1.4.7+dfsg-1) ... 561s Setting up r-cran-gridextra (2.3-3build1) ... 561s Setting up r-cran-scales (1.3.0-1) ... 561s Setting up r-cran-memoise (2.0.1-1) ... 561s Setting up r-cran-covr (3.6.4+dfsg-1) ... 561s Setting up r-cran-promises (1.2.1+dfsg-1) ... 561s Setting up r-cran-purrr (1.0.2-1) ... 561s Setting up r-cran-e1071 (1.7-14-1) ... 561s Setting up r-cran-spatstat.data (3.0-4-1) ... 561s Setting up r-cran-maxlik (1.5-2-1) ... 561s Setting up r-cran-spacetime (1.3-1-1) ... 561s Setting up r-cran-htmltools (0.5.7-1) ... 561s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 561s Setting up r-cran-spatstat.geom (3.2-8-1) ... 561s Setting up r-cran-pkgbuild (1.4.3-1) ... 561s Setting up r-cran-sass (0.4.8+dfsg-1) ... 561s Setting up r-cran-dplyr (1.1.4-1) ... 561s Setting up r-cran-pkgload (1.3.4-1) ... 561s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 561s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 561s Setting up r-cran-rematch2 (2.1.2-2build1) ... 561s Setting up r-cran-rpart (4.1.23-1) ... 561s Setting up r-cran-fontawesome (0.5.2-1) ... 561s Setting up r-cran-spatstat.random (3.2-2-1) ... 561s Setting up r-cran-plm (2.6-3-1) ... 561s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 561s Setting up r-cran-viridis (0.6.5-1) ... 561s Setting up r-cran-classint (0.4-10+dfsg-1) ... 561s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 561s Setting up r-cran-spatstat.explore (3.2-5-1) ... 561s Setting up r-cran-ggthemes (5.1.0-1) ... 561s Setting up r-cran-waldo (0.5.2-1build1) ... 561s Setting up r-cran-tidyr (1.3.1-1) ... 561s Setting up r-cran-ggforce (0.4.1-1) ... 561s Setting up r-cran-spatstat.model (3.2-8-1) ... 561s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 561s Setting up r-cran-testthat (3.2.1-1) ... 561s Setting up r-cran-ncmeta (0.3.6-1) ... 561s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 561s Setting up r-cran-spatstat.linnet (3.1-3-1) ... 561s Setting up r-cran-spatstat (3.0-7-1) ... 561s Setting up libheif-plugin-dav1d:amd64 (1.17.6-1ubuntu1) ... 561s Setting up libheif-plugin-libde265:amd64 (1.17.6-1ubuntu1) ... 561s Setting up libheif1:amd64 (1.17.6-1ubuntu1) ... 561s Setting up libgdal34:amd64 (3.8.4+dfsg-1) ... 561s Setting up r-cran-terra (1.7-65-1) ... 561s Setting up r-cran-sf (1.0-15+dfsg-1) ... 561s Setting up r-cran-stars (0.6-4-1) ... 561s Setting up r-cran-areal (0.1.8+dfsg-2) ... 561s Setting up r-cran-raster (3.6-26-1) ... 561s Setting up r-cran-lwgeom (0.2-13-3) ... 561s Setting up r-cran-ncdfgeom (1.1.6+dfsg-1) ... 561s Processing triggers for libc-bin (2.39-0ubuntu6) ... 561s Processing triggers for man-db (2.12.0-3) ... 562s Processing triggers for install-info (7.1-3) ... 566s Reading package lists... 566s Building dependency tree... 566s Reading state information... 566s Starting pkgProblemResolver with broken count: 0 566s Starting 2 pkgProblemResolver with broken count: 0 566s Done 567s The following NEW packages will be installed: 567s autopkgtest-satdep 567s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 567s Need to get 0 B/696 B of archives. 567s After this operation, 0 B of additional disk space will be used. 567s Get:1 /tmp/autopkgtest.skOjQf/4-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 567s Selecting previously unselected package autopkgtest-satdep. 567s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 99037 files and directories currently installed.) 567s Preparing to unpack .../4-autopkgtest-satdep.deb ... 567s Unpacking autopkgtest-satdep (0) ... 567s Setting up autopkgtest-satdep (0) ... 569s (Reading database ... 99037 files and directories currently installed.) 569s Removing autopkgtest-satdep (0) ... 569s autopkgtest [18:52:00]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 569s autopkgtest [18:52:00]: test pkg-r-autopkgtest: [----------------------- 569s Test: Try to load the R library stars 569s 569s R version 4.3.2 (2023-10-31) -- "Eye Holes" 569s Copyright (C) 2023 The R Foundation for Statistical Computing 569s Platform: x86_64-pc-linux-gnu (64-bit) 569s 569s R is free software and comes with ABSOLUTELY NO WARRANTY. 569s You are welcome to redistribute it under certain conditions. 569s Type 'license()' or 'licence()' for distribution details. 569s 569s R is a collaborative project with many contributors. 569s Type 'contributors()' for more information and 569s 'citation()' on how to cite R or R packages in publications. 569s 569s Type 'demo()' for some demos, 'help()' for on-line help, or 569s 'help.start()' for an HTML browser interface to help. 569s Type 'q()' to quit R. 569s 569s > library('stars') 569s Loading required package: abind 569s Loading required package: sf 570s Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.3.1; sf_use_s2() is TRUE 570s > 570s > 570s Other tests are currently unsupported! 570s They will be progressively added. 571s autopkgtest [18:52:02]: test pkg-r-autopkgtest: -----------------------] 571s autopkgtest [18:52:02]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 571s pkg-r-autopkgtest PASS 571s autopkgtest [18:52:02]: @@@@@@@@@@@@@@@@@@@@ summary 571s run-unit-test PASS 571s pkg-r-autopkgtest PASS 581s Creating nova instance adt-noble-i386-r-cran-stars-20240324-184231-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240324.img (UUID 4e56ccec-954f-4884-8b9c-3e1a29e50308)... 581s Creating nova instance adt-noble-i386-r-cran-stars-20240324-184231-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240324.img (UUID 4e56ccec-954f-4884-8b9c-3e1a29e50308)...