0s autopkgtest [00:59:05]: starting date and time: 2024-03-24 00:59:05+0000 0s autopkgtest [00:59:05]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [00:59:05]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.wl_nrf61/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-cran-stars --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-37.secgroup --name adt-noble-i386-r-cran-stars-20240324-005904-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 661s autopkgtest [01:10:06]: testbed dpkg architecture: amd64 662s autopkgtest [01:10:07]: testbed apt version: 2.7.12 662s autopkgtest [01:10:07]: test architecture: i386 662s autopkgtest [01:10:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 662s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 662s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3972 kB] 662s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 662s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 662s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 662s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [725 kB] 662s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [483 kB] 662s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 662s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 662s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 662s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 662s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4417 kB] 662s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1305 kB] 662s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 662s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [27.1 kB] 662s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [96.1 kB] 662s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 665s Fetched 11.8 MB in 1s (7854 kB/s) 666s Reading package lists... 667s Reading package lists... 668s Building dependency tree... 668s Reading state information... 668s Calculating upgrade... 668s The following packages will be upgraded: 668s libc-bin libc6 locales 668s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 668s Need to get 8176 kB of archives. 668s After this operation, 2048 B of additional disk space will be used. 668s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc6 amd64 2.39-0ubuntu6 [3262 kB] 668s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libc-bin amd64 2.39-0ubuntu6 [682 kB] 668s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 locales all 2.39-0ubuntu6 [4232 kB] 669s Preconfiguring packages ... 669s Fetched 8176 kB in 0s (46.6 MB/s) 669s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 669s Preparing to unpack .../libc6_2.39-0ubuntu6_amd64.deb ... 669s Unpacking libc6:amd64 (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 669s Setting up libc6:amd64 (2.39-0ubuntu6) ... 670s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 670s Preparing to unpack .../libc-bin_2.39-0ubuntu6_amd64.deb ... 670s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 670s Setting up libc-bin (2.39-0ubuntu6) ... 670s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 670s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ... 670s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 670s Setting up locales (2.39-0ubuntu6) ... 671s Generating locales (this might take a while)... 672s en_US.UTF-8... done 672s Generation complete. 672s Processing triggers for man-db (2.12.0-3) ... 673s Reading package lists... 674s Building dependency tree... 674s Reading state information... 674s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 674s sh: Attempting to set up Debian/Ubuntu apt sources automatically 674s sh: Distribution appears to be Ubuntu 675s Reading package lists... 676s Building dependency tree... 676s Reading state information... 676s eatmydata is already the newest version (131-1). 676s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 676s Reading package lists... 676s Building dependency tree... 676s Reading state information... 676s dbus is already the newest version (1.14.10-4ubuntu1). 676s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 676s Reading package lists... 677s Building dependency tree... 677s Reading state information... 677s rng-tools-debian is already the newest version (2.4). 677s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 677s Reading package lists... 677s Building dependency tree... 677s Reading state information... 678s The following packages will be REMOVED: 678s cloud-init* python3-configobj* python3-debconf* 678s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 678s After this operation, 3256 kB disk space will be freed. 678s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 678s Removing cloud-init (24.1.2-0ubuntu1) ... 678s Removing python3-configobj (5.0.8-3) ... 678s Removing python3-debconf (1.5.86) ... 679s Processing triggers for man-db (2.12.0-3) ... 679s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 679s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 680s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 680s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 680s invoke-rc.d: policy-rc.d denied execution of try-restart. 680s Reading package lists... 680s Building dependency tree... 680s Reading state information... 680s linux-generic is already the newest version (6.8.0-11.11+1). 680s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 680s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 680s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 680s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 683s Reading package lists... 683s Reading package lists... 683s Building dependency tree... 683s Reading state information... 683s Calculating upgrade... 683s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 683s Reading package lists... 683s Building dependency tree... 683s Reading state information... 684s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 684s autopkgtest [01:10:29]: rebooting testbed after setup commands that affected boot 834s autopkgtest [01:12:59]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 835s autopkgtest [01:13:00]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-stars 836s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-stars 0.6-4-1 (dsc) [2749 B] 836s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-stars 0.6-4-1 (tar) [3714 kB] 836s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-stars 0.6-4-1 (diff) [4316 B] 836s gpgv: Signature made Tue Oct 17 13:19:14 2023 UTC 836s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 836s gpgv: issuer "tille@debian.org" 836s gpgv: Can't check signature: No public key 836s dpkg-source: warning: cannot verify inline signature for ./r-cran-stars_0.6-4-1.dsc: no acceptable signature found 836s autopkgtest [01:13:01]: testing package r-cran-stars version 0.6-4-1 837s autopkgtest [01:13:02]: build not needed 839s autopkgtest [01:13:04]: test run-unit-test: preparing testbed 843s Note, using file '/tmp/autopkgtest.wAsk7p/1-autopkgtest-satdep.dsc' to get the build dependencies 843s Reading package lists... 843s Building dependency tree... 843s Reading state information... 843s Starting pkgProblemResolver with broken count: 0 844s Starting 2 pkgProblemResolver with broken count: 0 844s Done 844s The following NEW packages will be installed: 844s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 844s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 844s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 844s g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 844s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins 844s javascript-common libaec0 libarmadillo12 libarpack2 libasan8 libatomic1 844s libblas3 libblosc1 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcfitsio10 844s libcrypt-dev libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 844s libfreexl1 libfyba0 libgcc-13-dev libgdal34 libgeos-c1v5 libgeos3.12.1 844s libgeotiff5 libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b 844s libhdf4-0-alt libhdf5-103-1 libhdf5-hl-100 libheif-plugin-dav1d 844s libheif-plugin-libde265 libheif1 libhwasan0 libice6 libisl23 libitm1 844s libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 844s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 844s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 844s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 844s libjs-sifter.js libjs-twitter-bootstrap-datepicker libkmlbase1 libkmldom1 844s libkmlengine1 liblapack3 liblcms2-2 liblerc4 liblsan0 libltdl7 liblua5.4-0 844s libminizip1 libmpc3 libmysqlclient21 libnetcdf19 libodbc2 libodbcinst2 844s libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 844s libpaper-utils libpaper1 libpixman-1-0 libpoppler134 libpq5 libproj25 844s libqhull-r8.0 libquadmath0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 844s libspatialite8 libstdc++-13-dev libsuperlu6 libsz2 libtcl8.6 libthai-data 844s libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 libudunits2-0 libudunits2-data 844s liburiparser1 libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2 libxft2 844s libxrender1 libxss1 libxt6 linux-libc-dev littler mysql-common 844s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 844s proj-data r-base-core r-cran-abind r-cran-areal r-cran-askpass 844s r-cran-base64enc r-cran-bdsmatrix r-cran-brio r-cran-bslib r-cran-cachem 844s r-cran-cairo r-cran-callr r-cran-class r-cran-classint r-cran-cli 844s r-cran-clue r-cran-cluster r-cran-codetools r-cran-collapse 844s r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon 844s r-cran-cubelyr r-cran-curl r-cran-dbi r-cran-deldir r-cran-desc 844s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-ellipsis 844s r-cran-evaluate r-cran-exactextractr r-cran-fansi r-cran-farver 844s r-cran-fastmap r-cran-fnn r-cran-fontawesome r-cran-formula r-cran-fs 844s r-cran-future r-cran-future.apply r-cran-generics r-cran-ggforce 844s r-cran-ggplot2 r-cran-ggthemes r-cran-globals r-cran-glue r-cran-goftest 844s r-cran-gridextra r-cran-gstat r-cran-gtable r-cran-highr r-cran-htmltools 844s r-cran-httpuv r-cran-httr r-cran-intervals r-cran-isoband r-cran-jquerylib 844s r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later 844s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 844s r-cran-littler r-cran-lmtest r-cran-lwgeom r-cran-magrittr r-cran-mapdata 844s r-cran-maps r-cran-mass r-cran-matrix r-cran-maxlik r-cran-memoise 844s r-cran-mgcv r-cran-mime r-cran-misctools r-cran-munsell r-cran-ncdfgeom 844s r-cran-ncmeta r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-pbapply 844s r-cran-pcict r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 844s r-cran-pkgload r-cran-plm r-cran-polyclip r-cran-praise r-cran-processx 844s r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 844s r-cran-randomforest r-cran-rappdirs r-cran-raster r-cran-rbibutils 844s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rdpack 844s r-cran-rematch2 r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf 844s r-cran-rpart r-cran-rprojroot r-cran-s2 r-cran-sandwich r-cran-sass 844s r-cran-scales r-cran-sf r-cran-sftime r-cran-shiny r-cran-sourcetools 844s r-cran-sp r-cran-spacetime r-cran-spatstat r-cran-spatstat.data 844s r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.linnet 844s r-cran-spatstat.model r-cran-spatstat.random r-cran-spatstat.sparse 844s r-cran-spatstat.utils r-cran-stars r-cran-stringi r-cran-stringr 844s r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor r-cran-terra 844s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 844s r-cran-tweenr r-cran-units r-cran-utf8 r-cran-vctrs r-cran-viridis 844s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk r-cran-xfun 844s r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo rpcsvc-proto unixodbc-common 844s unzip x11-common xdg-utils zip 844s 0 upgraded, 318 newly installed, 0 to remove and 0 not upgraded. 844s Need to get 345 MB of archives. 844s After this operation, 976 MB of additional disk space will be used. 844s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu6 [20.4 kB] 844s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 844s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 844s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 844s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu6 [2126 kB] 844s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 844s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 844s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 844s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 844s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 844s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 844s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 844s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 844s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 844s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 844s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 844s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 844s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 844s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 844s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 844s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 844s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 844s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 845s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 845s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 845s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 845s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 845s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 845s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 845s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 845s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 845s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 845s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 845s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 845s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 845s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 845s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 845s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 845s Get:39 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 845s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 845s Get:41 http://ftpmaster.internal/ubuntu noble/universe amd64 gdal-data all 3.8.4+dfsg-1 [261 kB] 845s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 gdal-plugins amd64 3.8.4+dfsg-1 [24.5 kB] 845s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 845s Get:44 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 845s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 845s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 845s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 845s Get:48 http://ftpmaster.internal/ubuntu noble/universe amd64 libarpack2 amd64 3.9.1-1 [105 kB] 845s Get:49 http://ftpmaster.internal/ubuntu noble/universe amd64 libsuperlu6 amd64 6.0.1+dfsg1-1 [184 kB] 845s Get:50 http://ftpmaster.internal/ubuntu noble/universe amd64 libarmadillo12 amd64 1:12.6.7+dfsg-1 [135 kB] 845s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libsnappy1v5 amd64 1.1.10-1 [28.4 kB] 845s Get:52 http://ftpmaster.internal/ubuntu noble/universe amd64 libblosc1 amd64 1.21.5+ds-1 [36.5 kB] 845s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 845s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 845s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 845s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 845s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 845s Get:58 http://ftpmaster.internal/ubuntu noble/universe amd64 libcfitsio10 amd64 4.3.1-1 [528 kB] 845s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 845s Get:60 http://ftpmaster.internal/ubuntu noble/universe amd64 libdav1d7 amd64 1.4.0-1 [605 kB] 845s Get:61 http://ftpmaster.internal/ubuntu noble/universe amd64 libde265-0 amd64 1.0.15-1 [192 kB] 845s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 845s Get:63 http://ftpmaster.internal/ubuntu noble/universe amd64 libfyba0 amd64 4.1.1-8 [119 kB] 845s Get:64 http://ftpmaster.internal/ubuntu noble/universe amd64 libminizip1 amd64 1:1.3.dfsg-3ubuntu1 [21.8 kB] 845s Get:65 http://ftpmaster.internal/ubuntu noble/universe amd64 libfreexl1 amd64 2.0.0-1 [41.8 kB] 845s Get:66 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeos3.12.1 amd64 3.12.1-1 [852 kB] 845s Get:67 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeos-c1v5 amd64 3.12.1-1 [96.1 kB] 845s Get:68 http://ftpmaster.internal/ubuntu noble/universe amd64 proj-data all 9.3.1-1 [7867 kB] 845s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 845s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 845s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 845s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 845s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 845s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 845s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 845s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libproj25 amd64 9.3.1-1 [1379 kB] 845s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeotiff5 amd64 1.7.1-5 [62.5 kB] 845s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libgif7 amd64 5.2.1-2.5 [34.0 kB] 845s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf4-0-alt amd64 4.2.16-3 [282 kB] 845s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 845s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 845s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif-plugin-dav1d amd64 1.17.6-1ubuntu1 [10.9 kB] 845s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif-plugin-libde265 amd64 1.17.6-1ubuntu1 [9024 B] 845s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif1 amd64 1.17.6-1ubuntu1 [325 kB] 845s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 liburiparser1 amd64 0.9.7+dfsg-2 [35.9 kB] 845s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmlbase1 amd64 1.3.0-10 [47.4 kB] 845s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmldom1 amd64 1.3.0-10 [151 kB] 845s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmlengine1 amd64 1.3.0-10 [69.3 kB] 845s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 mysql-common all 5.8+1.1.0 [6626 B] 845s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libmysqlclient21 amd64 8.0.36-1 [1283 kB] 845s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB] 845s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libnetcdf19 amd64 1:4.9.2-3ubuntu1 [472 kB] 845s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libltdl7 amd64 2.4.7-7 [40.5 kB] 845s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libodbc2 amd64 2.3.12-1 [159 kB] 845s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 unixodbc-common all 2.3.12-1 [8524 B] 845s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libodbcinst2 amd64 2.3.12-1 [30.9 kB] 845s Get:97 http://ftpmaster.internal/ubuntu noble/universe amd64 libogdi4.1 amd64 4.1.1+ds-1 [218 kB] 845s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libopenjp2-7 amd64 2.5.0-2 [174 kB] 845s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 liblcms2-2 amd64 2.14-2 [161 kB] 845s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libpoppler134 amd64 24.02.0-1ubuntu2 [1112 kB] 845s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpq5 amd64 16.2-1 [138 kB] 845s Get:102 http://ftpmaster.internal/ubuntu noble/universe amd64 libqhull-r8.0 amd64 2020.2-6 [194 kB] 845s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 librttopo1 amd64 1.1.0-3 [191 kB] 845s Get:104 http://ftpmaster.internal/ubuntu noble/universe amd64 libspatialite8 amd64 5.1.0-1 [2055 kB] 845s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 libxerces-c3.2 amd64 3.2.4+debian-1.1 [1110 kB] 845s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 libgdal34 amd64 3.8.4+dfsg-1 [8343 kB] 845s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 845s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 845s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 845s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 845s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 845s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 845s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 845s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 845s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 845s Get:116 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 845s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 845s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 845s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 845s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 845s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 845s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 845s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 845s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 845s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 845s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 845s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 845s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 845s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 845s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 845s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 845s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 845s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 845s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 845s Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 845s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 845s Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.14-1 [779 kB] 845s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 libudunits2-data all 2.2.28-7 [19.3 kB] 845s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 libudunits2-0 amd64 2.2.28-7 [54.2 kB] 845s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 845s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 845s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 845s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 845s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 846s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 846s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 846s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 846s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 846s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 846s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 846s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 846s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 846s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 846s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 846s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 846s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 846s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 846s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 846s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 846s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 846s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 846s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 846s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 846s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 846s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 846s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 846s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 846s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 846s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 846s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 846s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-class amd64 7.3-22-2 [88.3 kB] 846s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 846s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-e1071 amd64 1.7-14-1 [558 kB] 846s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-kernsmooth amd64 2.23-22-1 [91.7 kB] 846s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-classint amd64 0.4-10+dfsg-1 [106 kB] 846s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 846s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 846s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 846s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-wk amd64 0.9.1-1 [1784 kB] 846s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-s2 amd64 1.1.6-1 [1980 kB] 846s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-units amd64 0.8-5+dfsg-1 [275 kB] 846s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sf amd64 1.0-15+dfsg-1 [3028 kB] 846s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 846s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 846s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 846s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 846s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bdsmatrix amd64 1.3-6-1 [293 kB] 846s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 846s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 846s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 846s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 846s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 846s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 846s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 846s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 846s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 846s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 846s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 846s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 846s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 846s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 846s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 846s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 846s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 846s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 846s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cluster amd64 2.1.6-1 [554 kB] 846s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-clue amd64 0.3-65-1 [960 kB] 846s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 846s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-collapse amd64 2.0.10-1 [3112 kB] 846s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 846s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 846s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 846s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rex all 1.2.1-1 [129 kB] 846s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 846s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 846s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 846s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 846s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 846s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 846s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 846s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cubelyr all 1.0.2-1 [347 kB] 846s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-deldir amd64 2.0-4-1 [270 kB] 846s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 846s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 846s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 846s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 846s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sp amd64 1:2.1-2+dfsg-1 [1447 kB] 846s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-terra amd64 1.7-65-1 [3676 kB] 846s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-raster amd64 3.6-26-1 [3118 kB] 846s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-exactextractr amd64 0.10.0-1 [579 kB] 846s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 846s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fnn amd64 1.1.4-1 [122 kB] 846s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 846s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 846s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-globals all 0.16.2-1 [117 kB] 846s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 846s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-parallelly amd64 1.37.1-1 [365 kB] 846s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 846s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-future.apply all 1.11.1+dfsg-1 [171 kB] 846s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 846s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 846s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 846s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 846s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 846s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 846s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 846s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 846s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 846s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 846s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 846s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tweenr amd64 2.0.2-1 [397 kB] 846s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-polyclip amd64 1.10-6-1 [113 kB] 846s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-systemfonts amd64 1.0.5-1 [229 kB] 846s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppeigen amd64 0.3.3.9.4-1 [1189 kB] 846s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggforce amd64 0.4.1-1 [1846 kB] 846s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 847s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 847s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggthemes all 5.1.0-1 [434 kB] 847s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] 847s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 847s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB] 847s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sftime all 0.2-0-6 [168 kB] 847s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xts amd64 0.13.2-1 [772 kB] 847s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-intervals amd64 0.15.4-1 [756 kB] 847s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spacetime all 1.3-1-1 [2804 kB] 847s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stars all 0.6-4-1 [4030 kB] 847s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gstat amd64 2.1-1-2 [2343 kB] 847s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 847s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 847s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 847s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 847s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 847s Get:273 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 847s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 847s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB] 847s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lwgeom amd64 0.2-13-3 [420 kB] 847s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-maps amd64 3.4.2-1 [2359 kB] 847s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 847s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB] 847s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sandwich all 3.1-0-1 [1484 kB] 847s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-maxlik all 1.5-2-1 [1550 kB] 847s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rnetcdf amd64 2.9-1-1 [232 kB] 847s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 847s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ncmeta all 0.3.6-1 [360 kB] 847s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 847s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 847s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pcict amd64 0.5-4.4-1 [94.4 kB] 847s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 847s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 847s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 847s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rbibutils amd64 2.2.16-1 [754 kB] 847s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rdpack all 2.6-1 [742 kB] 847s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plm all 2.6-3-1 [2141 kB] 847s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 847s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-randomforest amd64 4.7-1.1-1 [215 kB] 847s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 847s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 847s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 847s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 847s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 847s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 847s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 847s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 847s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 847s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rpart amd64 4.1.23-1 [661 kB] 847s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.utils amd64 3.0-4-1 [361 kB] 847s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.data all 3.0-4-1 [4090 kB] 847s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.geom amd64 3.2-8-1 [3817 kB] 848s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.random amd64 3.2-2-1 [1140 kB] 848s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] 848s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.sparse amd64 3.0-3-1 [215 kB] 848s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.explore amd64 3.2-5-1 [3283 kB] 848s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.model amd64 3.2-8-1 [3290 kB] 848s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.linnet amd64 3.1-3-1 [1408 kB] 848s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat amd64 3.0-7-1 [3817 kB] 848s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 848s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 848s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 848s Preconfiguring packages ... 849s Fetched 345 MB in 4s (96.5 MB/s) 849s Selecting previously unselected package libc-dev-bin. 849s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 849s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu6_amd64.deb ... 849s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 849s Selecting previously unselected package linux-libc-dev:amd64. 849s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 849s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 849s Selecting previously unselected package libcrypt-dev:amd64. 849s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 849s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 849s Selecting previously unselected package rpcsvc-proto. 849s Preparing to unpack .../003-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 849s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 849s Selecting previously unselected package libc6-dev:amd64. 849s Preparing to unpack .../004-libc6-dev_2.39-0ubuntu6_amd64.deb ... 849s Unpacking libc6-dev:amd64 (2.39-0ubuntu6) ... 849s Selecting previously unselected package libisl23:amd64. 849s Preparing to unpack .../005-libisl23_0.26-3_amd64.deb ... 849s Unpacking libisl23:amd64 (0.26-3) ... 849s Selecting previously unselected package libmpc3:amd64. 849s Preparing to unpack .../006-libmpc3_1.3.1-1_amd64.deb ... 849s Unpacking libmpc3:amd64 (1.3.1-1) ... 849s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 849s Preparing to unpack .../007-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 849s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 849s Selecting previously unselected package cpp-13. 849s Preparing to unpack .../008-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 849s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 849s Selecting previously unselected package cpp-x86-64-linux-gnu. 849s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 849s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 850s Selecting previously unselected package cpp. 850s Preparing to unpack .../010-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 850s Unpacking cpp (4:13.2.0-7ubuntu1) ... 850s Selecting previously unselected package libcc1-0:amd64. 850s Preparing to unpack .../011-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 850s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 850s Selecting previously unselected package libgomp1:amd64. 850s Preparing to unpack .../012-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 850s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 850s Selecting previously unselected package libitm1:amd64. 850s Preparing to unpack .../013-libitm1_14-20240303-1ubuntu1_amd64.deb ... 850s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 850s Selecting previously unselected package libatomic1:amd64. 850s Preparing to unpack .../014-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 850s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 850s Selecting previously unselected package libasan8:amd64. 850s Preparing to unpack .../015-libasan8_14-20240303-1ubuntu1_amd64.deb ... 850s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 850s Selecting previously unselected package liblsan0:amd64. 850s Preparing to unpack .../016-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 850s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 850s Selecting previously unselected package libtsan2:amd64. 850s Preparing to unpack .../017-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 850s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 850s Selecting previously unselected package libubsan1:amd64. 850s Preparing to unpack .../018-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 850s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 850s Selecting previously unselected package libhwasan0:amd64. 850s Preparing to unpack .../019-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 850s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 850s Selecting previously unselected package libquadmath0:amd64. 850s Preparing to unpack .../020-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 850s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 850s Selecting previously unselected package libgcc-13-dev:amd64. 850s Preparing to unpack .../021-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 850s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 850s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 850s Preparing to unpack .../022-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 850s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 850s Selecting previously unselected package gcc-13. 851s Preparing to unpack .../023-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 851s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 851s Selecting previously unselected package gcc-x86-64-linux-gnu. 851s Preparing to unpack .../024-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 851s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 851s Selecting previously unselected package gcc. 851s Preparing to unpack .../025-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 851s Unpacking gcc (4:13.2.0-7ubuntu1) ... 851s Selecting previously unselected package libstdc++-13-dev:amd64. 851s Preparing to unpack .../026-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 851s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 851s Selecting previously unselected package g++-13-x86-64-linux-gnu. 851s Preparing to unpack .../027-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 851s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 851s Selecting previously unselected package g++-13. 851s Preparing to unpack .../028-g++-13_13.2.0-17ubuntu2_amd64.deb ... 851s Unpacking g++-13 (13.2.0-17ubuntu2) ... 851s Selecting previously unselected package g++-x86-64-linux-gnu. 851s Preparing to unpack .../029-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 851s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 851s Selecting previously unselected package g++. 851s Preparing to unpack .../030-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 851s Unpacking g++ (4:13.2.0-7ubuntu1) ... 851s Selecting previously unselected package build-essential. 851s Preparing to unpack .../031-build-essential_12.10ubuntu1_amd64.deb ... 851s Unpacking build-essential (12.10ubuntu1) ... 851s Selecting previously unselected package fonts-dejavu-mono. 851s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8_all.deb ... 851s Unpacking fonts-dejavu-mono (2.37-8) ... 851s Selecting previously unselected package fonts-dejavu-core. 851s Preparing to unpack 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libaec0:amd64 (1.1.2-1) ... 852s Selecting previously unselected package libblas3:amd64. 852s Preparing to unpack .../044-libblas3_3.12.0-3_amd64.deb ... 852s Unpacking libblas3:amd64 (3.12.0-3) ... 852s Selecting previously unselected package libgfortran5:amd64. 852s Preparing to unpack .../045-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 852s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 852s Selecting previously unselected package liblapack3:amd64. 852s Preparing to unpack .../046-liblapack3_3.12.0-3_amd64.deb ... 852s Unpacking liblapack3:amd64 (3.12.0-3) ... 852s Selecting previously unselected package libarpack2:amd64. 852s Preparing to unpack .../047-libarpack2_3.9.1-1_amd64.deb ... 852s Unpacking libarpack2:amd64 (3.9.1-1) ... 852s Selecting previously unselected package libsuperlu6:amd64. 852s Preparing to unpack .../048-libsuperlu6_6.0.1+dfsg1-1_amd64.deb ... 852s Unpacking libsuperlu6:amd64 (6.0.1+dfsg1-1) ... 852s Selecting previously unselected package libarmadillo12. 852s Preparing to unpack .../049-libarmadillo12_1%3a12.6.7+dfsg-1_amd64.deb ... 852s Unpacking libarmadillo12 (1:12.6.7+dfsg-1) ... 852s Selecting previously unselected package libsnappy1v5:amd64. 852s Preparing to unpack .../050-libsnappy1v5_1.1.10-1_amd64.deb ... 852s Unpacking libsnappy1v5:amd64 (1.1.10-1) ... 852s Selecting previously unselected package libblosc1:amd64. 852s Preparing to unpack .../051-libblosc1_1.21.5+ds-1_amd64.deb ... 852s Unpacking libblosc1:amd64 (1.21.5+ds-1) ... 852s Selecting previously unselected package libpixman-1-0:amd64. 852s Preparing to unpack .../052-libpixman-1-0_0.42.2-1_amd64.deb ... 852s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 852s Selecting previously unselected package libxcb-render0:amd64. 852s Preparing to unpack .../053-libxcb-render0_1.15-1_amd64.deb ... 852s Unpacking libxcb-render0:amd64 (1.15-1) ... 852s Selecting previously unselected package libxcb-shm0:amd64. 852s Preparing to unpack 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previously unselected package libde265-0:amd64. 853s Preparing to unpack .../060-libde265-0_1.0.15-1_amd64.deb ... 853s Unpacking libde265-0:amd64 (1.0.15-1) ... 853s Selecting previously unselected package libdeflate0:amd64. 853s Preparing to unpack .../061-libdeflate0_1.19-1_amd64.deb ... 853s Unpacking libdeflate0:amd64 (1.19-1) ... 853s Selecting previously unselected package libfyba0:amd64. 853s Preparing to unpack .../062-libfyba0_4.1.1-8_amd64.deb ... 853s Unpacking libfyba0:amd64 (4.1.1-8) ... 853s Selecting previously unselected package libminizip1:amd64. 853s Preparing to unpack .../063-libminizip1_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 853s Unpacking libminizip1:amd64 (1:1.3.dfsg-3ubuntu1) ... 853s Selecting previously unselected package libfreexl1:amd64. 853s Preparing to unpack .../064-libfreexl1_2.0.0-1_amd64.deb ... 853s Unpacking libfreexl1:amd64 (2.0.0-1) ... 853s Selecting previously unselected package libgeos3.12.1:amd64. 853s Preparing to unpack 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853s Selecting previously unselected package liblerc4:amd64. 853s Preparing to unpack .../071-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 853s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 853s Selecting previously unselected package libsharpyuv0:amd64. 853s Preparing to unpack .../072-libsharpyuv0_1.3.2-0.4_amd64.deb ... 853s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 853s Selecting previously unselected package libwebp7:amd64. 853s Preparing to unpack .../073-libwebp7_1.3.2-0.4_amd64.deb ... 853s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 853s Selecting previously unselected package libtiff6:amd64. 853s Preparing to unpack .../074-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 853s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 853s Selecting previously unselected package libproj25:amd64. 853s Preparing to unpack .../075-libproj25_9.3.1-1_amd64.deb ... 853s Unpacking libproj25:amd64 (9.3.1-1) ... 853s Selecting previously unselected package libgeotiff5:amd64. 853s Preparing to unpack .../076-libgeotiff5_1.7.1-5_amd64.deb ... 853s Unpacking libgeotiff5:amd64 (1.7.1-5) ... 853s Selecting previously unselected package libgif7:amd64. 853s Preparing to unpack .../077-libgif7_5.2.1-2.5_amd64.deb ... 853s Unpacking libgif7:amd64 (5.2.1-2.5) ... 853s Selecting previously unselected package libhdf4-0-alt. 853s Preparing to unpack .../078-libhdf4-0-alt_4.2.16-3_amd64.deb ... 853s Unpacking libhdf4-0-alt (4.2.16-3) ... 853s Selecting previously unselected package libsz2:amd64. 853s Preparing to unpack .../079-libsz2_1.1.2-1_amd64.deb ... 853s Unpacking libsz2:amd64 (1.1.2-1) ... 853s Selecting previously unselected package libhdf5-103-1:amd64. 853s Preparing to unpack .../080-libhdf5-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 853s Unpacking libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 853s Selecting previously unselected package libheif-plugin-dav1d:amd64. 853s Preparing to unpack .../081-libheif-plugin-dav1d_1.17.6-1ubuntu1_amd64.deb ... 853s Unpacking libheif-plugin-dav1d:amd64 (1.17.6-1ubuntu1) ... 853s Selecting previously unselected package libheif-plugin-libde265:amd64. 853s Preparing to unpack .../082-libheif-plugin-libde265_1.17.6-1ubuntu1_amd64.deb ... 853s Unpacking libheif-plugin-libde265:amd64 (1.17.6-1ubuntu1) ... 854s Selecting previously unselected package libheif1:amd64. 854s Preparing to unpack .../083-libheif1_1.17.6-1ubuntu1_amd64.deb ... 854s Unpacking libheif1:amd64 (1.17.6-1ubuntu1) ... 854s Selecting previously unselected package liburiparser1:amd64. 854s Preparing to unpack .../084-liburiparser1_0.9.7+dfsg-2_amd64.deb ... 854s Unpacking liburiparser1:amd64 (0.9.7+dfsg-2) ... 854s Selecting previously unselected package libkmlbase1:amd64. 854s Preparing to unpack .../085-libkmlbase1_1.3.0-10_amd64.deb ... 854s Unpacking libkmlbase1:amd64 (1.3.0-10) ... 854s Selecting previously unselected package libkmldom1:amd64. 854s Preparing to unpack .../086-libkmldom1_1.3.0-10_amd64.deb ... 854s Unpacking libkmldom1:amd64 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previously unselected package libltdl7:amd64. 854s Preparing to unpack .../092-libltdl7_2.4.7-7_amd64.deb ... 854s Unpacking libltdl7:amd64 (2.4.7-7) ... 854s Selecting previously unselected package libodbc2:amd64. 854s Preparing to unpack .../093-libodbc2_2.3.12-1_amd64.deb ... 854s Unpacking libodbc2:amd64 (2.3.12-1) ... 854s Selecting previously unselected package unixodbc-common. 854s Preparing to unpack .../094-unixodbc-common_2.3.12-1_all.deb ... 854s Unpacking unixodbc-common (2.3.12-1) ... 854s Selecting previously unselected package libodbcinst2:amd64. 854s Preparing to unpack .../095-libodbcinst2_2.3.12-1_amd64.deb ... 854s Unpacking libodbcinst2:amd64 (2.3.12-1) ... 854s Selecting previously unselected package libogdi4.1. 854s Preparing to unpack .../096-libogdi4.1_4.1.1+ds-1_amd64.deb ... 854s Unpacking libogdi4.1 (4.1.1+ds-1) ... 854s Selecting previously unselected package libopenjp2-7:amd64. 854s Preparing to unpack .../097-libopenjp2-7_2.5.0-2_amd64.deb ... 854s 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855s Selecting previously unselected package libjs-es5-shim. 855s Preparing to unpack .../114-libjs-es5-shim_4.6.7-2_all.deb ... 855s Unpacking libjs-es5-shim (4.6.7-2) ... 855s Selecting previously unselected package libjs-highlight.js. 855s Preparing to unpack .../115-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 855s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 855s Selecting previously unselected package libjs-jquery. 855s Preparing to unpack .../116-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 855s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 856s Selecting previously unselected package libjs-jquery-datatables. 856s Preparing to unpack .../117-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 856s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 856s Selecting previously unselected package libjs-sifter.js. 856s Preparing to unpack .../118-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 856s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 856s Selecting previously unselected 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package liblua5.4-0:amd64. 856s Preparing to unpack .../124-liblua5.4-0_5.4.6-3_amd64.deb ... 856s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 856s Selecting previously unselected package libthai-data. 856s Preparing to unpack .../125-libthai-data_0.1.29-2_all.deb ... 856s Unpacking libthai-data (0.1.29-2) ... 856s Selecting previously unselected package libthai0:amd64. 856s Preparing to unpack .../126-libthai0_0.1.29-2_amd64.deb ... 856s Unpacking libthai0:amd64 (0.1.29-2) ... 856s Selecting previously unselected package libpango-1.0-0:amd64. 856s Preparing to unpack .../127-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 856s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 856s Selecting previously unselected package libpangoft2-1.0-0:amd64. 856s Preparing to unpack .../128-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 856s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 856s Selecting previously unselected package libpangocairo-1.0-0:amd64. 856s Preparing to unpack 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Selecting previously unselected package libxss1:amd64. 856s Preparing to unpack .../135-libxss1_1%3a1.2.3-1build2_amd64.deb ... 856s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 856s Selecting previously unselected package libtk8.6:amd64. 856s Preparing to unpack .../136-libtk8.6_8.6.14-1_amd64.deb ... 856s Unpacking libtk8.6:amd64 (8.6.14-1) ... 856s Selecting previously unselected package libudunits2-data. 856s Preparing to unpack .../137-libudunits2-data_2.2.28-7_all.deb ... 856s Unpacking libudunits2-data (2.2.28-7) ... 856s Selecting previously unselected package libudunits2-0. 856s Preparing to unpack .../138-libudunits2-0_2.2.28-7_amd64.deb ... 856s Unpacking libudunits2-0 (2.2.28-7) ... 856s Selecting previously unselected package libxt6:amd64. 856s Preparing to unpack .../139-libxt6_1%3a1.2.1-1.1_amd64.deb ... 856s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 856s Selecting previously unselected package zip. 856s Preparing to unpack .../140-zip_3.0-13_amd64.deb ... 856s Unpacking zip (3.0-13) ... 856s Selecting previously unselected package unzip. 856s Preparing to unpack .../141-unzip_6.0-28ubuntu3_amd64.deb ... 856s Unpacking unzip (6.0-28ubuntu3) ... 856s Selecting previously unselected package xdg-utils. 856s Preparing to unpack .../142-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 856s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 856s Selecting previously unselected package r-base-core. 856s Preparing to unpack .../143-r-base-core_4.3.2-1build1_amd64.deb ... 856s Unpacking r-base-core (4.3.2-1build1) ... 856s Selecting previously unselected package r-cran-littler. 856s Preparing to unpack .../144-r-cran-littler_0.3.19-1_amd64.deb ... 856s Unpacking r-cran-littler (0.3.19-1) ... 856s Selecting previously unselected package littler. 856s Preparing to unpack .../145-littler_0.3.19-1_all.deb ... 856s Unpacking littler (0.3.19-1) ... 856s Selecting previously unselected package node-bootstrap-sass. 856s Preparing to unpack .../146-node-bootstrap-sass_3.4.3-2_all.deb ... 856s Unpacking node-bootstrap-sass (3.4.3-2) ... 856s Selecting previously unselected package node-html5shiv. 856s Preparing to unpack .../147-node-html5shiv_3.7.3+dfsg-5_all.deb ... 856s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 856s Selecting previously unselected package node-normalize.css. 857s Preparing to unpack .../148-node-normalize.css_8.0.1-5_all.deb ... 857s Unpacking node-normalize.css (8.0.1-5) ... 857s Selecting previously unselected package pandoc-data. 857s Preparing to unpack .../149-pandoc-data_3.1.3-1_all.deb ... 857s Unpacking pandoc-data (3.1.3-1) ... 857s Selecting previously unselected package pandoc. 857s Preparing to unpack .../150-pandoc_3.1.3+ds-2_amd64.deb ... 857s Unpacking pandoc (3.1.3+ds-2) ... 857s Selecting previously unselected package r-cran-abind. 857s Preparing to unpack .../151-r-cran-abind_1.4-5-2_all.deb ... 857s Unpacking r-cran-abind (1.4-5-2) ... 857s Selecting previously unselected package r-cran-cli. 858s Preparing to unpack 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package r-cran-fansi. 858s Preparing to unpack .../158-r-cran-fansi_1.0.5-1_amd64.deb ... 858s Unpacking r-cran-fansi (1.0.5-1) ... 858s Selecting previously unselected package r-cran-utf8. 858s Preparing to unpack .../159-r-cran-utf8_1.2.4-1_amd64.deb ... 858s Unpacking r-cran-utf8 (1.2.4-1) ... 858s Selecting previously unselected package r-cran-vctrs. 858s Preparing to unpack .../160-r-cran-vctrs_0.6.5-1_amd64.deb ... 858s Unpacking r-cran-vctrs (0.6.5-1) ... 858s Selecting previously unselected package r-cran-pillar. 858s Preparing to unpack .../161-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 858s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 858s Selecting previously unselected package r-cran-r6. 858s Preparing to unpack .../162-r-cran-r6_2.5.1-1_all.deb ... 858s Unpacking r-cran-r6 (2.5.1-1) ... 858s Selecting previously unselected package r-cran-pkgconfig. 858s Preparing to unpack .../163-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 858s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 858s Selecting previously unselected package r-cran-tibble. 858s Preparing to unpack .../164-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 858s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 858s Selecting previously unselected package r-cran-withr. 858s Preparing to unpack .../165-r-cran-withr_2.5.0-1_all.deb ... 858s Unpacking r-cran-withr (2.5.0-1) ... 858s Selecting previously unselected package r-cran-tidyselect. 858s Preparing to unpack .../166-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 858s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 858s Selecting previously unselected package r-cran-dplyr. 858s Preparing to unpack .../167-r-cran-dplyr_1.1.4-1_amd64.deb ... 858s Unpacking r-cran-dplyr (1.1.4-1) ... 858s Selecting previously unselected package r-cran-purrr. 858s Preparing to unpack .../168-r-cran-purrr_1.0.2-1_amd64.deb ... 858s Unpacking r-cran-purrr (1.0.2-1) ... 858s Selecting previously unselected package r-cran-mass. 858s Preparing to unpack .../169-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 858s Unpacking r-cran-mass (7.3-60.0.1-1) ... 858s Selecting previously unselected package r-cran-class. 858s Preparing to unpack .../170-r-cran-class_7.3-22-2_amd64.deb ... 858s Unpacking r-cran-class (7.3-22-2) ... 858s Selecting previously unselected package r-cran-proxy. 858s Preparing to unpack .../171-r-cran-proxy_0.4-27-1_amd64.deb ... 858s Unpacking r-cran-proxy (0.4-27-1) ... 858s Selecting previously unselected package r-cran-e1071. 858s Preparing to unpack .../172-r-cran-e1071_1.7-14-1_amd64.deb ... 858s Unpacking r-cran-e1071 (1.7-14-1) ... 858s Selecting previously unselected package r-cran-kernsmooth. 858s Preparing to unpack .../173-r-cran-kernsmooth_2.23-22-1_amd64.deb ... 858s Unpacking r-cran-kernsmooth (2.23-22-1) ... 858s Selecting previously unselected package r-cran-classint. 858s Preparing to unpack .../174-r-cran-classint_0.4-10+dfsg-1_amd64.deb ... 858s Unpacking r-cran-classint (0.4-10+dfsg-1) ... 858s Selecting previously unselected package r-cran-dbi. 858s Preparing to unpack .../175-r-cran-dbi_1.2.2-1_all.deb ... 858s Unpacking r-cran-dbi (1.2.2-1) ... 859s Selecting previously unselected package r-cran-pkgkitten. 859s Preparing to unpack .../176-r-cran-pkgkitten_0.2.3-1_all.deb ... 859s Unpacking r-cran-pkgkitten (0.2.3-1) ... 859s Selecting previously unselected package r-cran-rcpp. 859s Preparing to unpack .../177-r-cran-rcpp_1.0.12-1_amd64.deb ... 859s Unpacking r-cran-rcpp (1.0.12-1) ... 859s Selecting previously unselected package r-cran-wk. 859s Preparing to unpack .../178-r-cran-wk_0.9.1-1_amd64.deb ... 859s Unpacking r-cran-wk (0.9.1-1) ... 859s Selecting previously unselected package r-cran-s2. 859s Preparing to unpack .../179-r-cran-s2_1.1.6-1_amd64.deb ... 859s Unpacking r-cran-s2 (1.1.6-1) ... 859s Selecting previously unselected package r-cran-units. 859s Preparing to unpack .../180-r-cran-units_0.8-5+dfsg-1_amd64.deb ... 859s Unpacking r-cran-units (0.8-5+dfsg-1) ... 859s Selecting previously unselected package r-cran-sf. 859s Preparing to unpack .../181-r-cran-sf_1.0-15+dfsg-1_amd64.deb ... 859s Unpacking r-cran-sf (1.0-15+dfsg-1) ... 859s Selecting previously unselected package r-cran-areal. 859s Preparing to unpack .../182-r-cran-areal_0.1.8+dfsg-2_all.deb ... 859s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 859s Selecting previously unselected package r-cran-sys. 859s Preparing to unpack .../183-r-cran-sys_3.4.2-1_amd64.deb ... 859s Unpacking r-cran-sys (3.4.2-1) ... 859s Selecting previously unselected package r-cran-askpass. 859s Preparing to unpack .../184-r-cran-askpass_1.2.0-1_amd64.deb ... 859s Unpacking r-cran-askpass (1.2.0-1) ... 859s Selecting previously unselected package r-cran-base64enc. 859s Preparing to unpack .../185-r-cran-base64enc_0.1-3-3_amd64.deb ... 859s Unpacking r-cran-base64enc (0.1-3-3) ... 859s Selecting previously unselected package r-cran-bdsmatrix. 859s Preparing to unpack .../186-r-cran-bdsmatrix_1.3-6-1_amd64.deb ... 859s Unpacking r-cran-bdsmatrix (1.3-6-1) ... 859s Selecting previously unselected package r-cran-brio. 859s Preparing to unpack .../187-r-cran-brio_1.1.4-1_amd64.deb ... 859s Unpacking r-cran-brio (1.1.4-1) ... 859s Selecting previously unselected package r-cran-fastmap. 859s Preparing to unpack .../188-r-cran-fastmap_1.1.1-1_amd64.deb ... 859s Unpacking r-cran-fastmap (1.1.1-1) ... 859s Selecting previously unselected package r-cran-cachem. 859s Preparing to unpack .../189-r-cran-cachem_1.0.8-1_amd64.deb ... 859s Unpacking r-cran-cachem (1.0.8-1) ... 859s Selecting previously unselected package r-cran-digest. 859s Preparing to unpack .../190-r-cran-digest_0.6.34-1_amd64.deb ... 859s Unpacking r-cran-digest (0.6.34-1) ... 859s Selecting previously unselected package r-cran-ellipsis. 859s Preparing to unpack .../191-r-cran-ellipsis_0.3.2-2_amd64.deb ... 859s Unpacking r-cran-ellipsis (0.3.2-2) ... 859s Selecting previously unselected package r-cran-htmltools. 859s Preparing to unpack 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previously unselected package r-cran-rappdirs. 859s Preparing to unpack .../198-r-cran-rappdirs_0.3.3-1_amd64.deb ... 859s Unpacking r-cran-rappdirs (0.3.3-1) ... 860s Selecting previously unselected package r-cran-sass. 860s Preparing to unpack .../199-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 860s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 860s Selecting previously unselected package r-cran-bslib. 860s Preparing to unpack .../200-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 860s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 860s Selecting previously unselected package r-cran-cairo. 860s Preparing to unpack .../201-r-cran-cairo_1.6-2-1_amd64.deb ... 860s Unpacking r-cran-cairo (1.6-2-1) ... 860s Selecting previously unselected package r-cran-ps. 860s Preparing to unpack .../202-r-cran-ps_1.7.6-1_amd64.deb ... 860s Unpacking r-cran-ps (1.7.6-1) ... 860s Selecting previously unselected package r-cran-processx. 860s Preparing to unpack .../203-r-cran-processx_3.8.3-1_amd64.deb ... 860s Unpacking r-cran-processx (3.8.3-1) ... 860s Selecting previously unselected package r-cran-callr. 860s Preparing to unpack .../204-r-cran-callr_3.7.3-2_all.deb ... 860s Unpacking r-cran-callr (3.7.3-2) ... 860s Selecting previously unselected package r-cran-cluster. 860s Preparing to unpack .../205-r-cran-cluster_2.1.6-1_amd64.deb ... 860s Unpacking r-cran-cluster (2.1.6-1) ... 860s Selecting previously unselected package r-cran-clue. 860s Preparing to unpack .../206-r-cran-clue_0.3-65-1_amd64.deb ... 860s Unpacking r-cran-clue (0.3-65-1) ... 860s Selecting previously unselected package r-cran-codetools. 860s Preparing to unpack .../207-r-cran-codetools_0.2-19-1_all.deb ... 860s Unpacking r-cran-codetools (0.2-19-1) ... 860s Selecting previously unselected package r-cran-collapse. 860s Preparing to unpack .../208-r-cran-collapse_2.0.10-1_amd64.deb ... 860s Unpacking r-cran-collapse (2.0.10-1) ... 860s Selecting previously unselected package r-cran-colorspace. 860s Preparing to unpack .../209-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 860s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 860s Selecting previously unselected package r-cran-commonmark. 860s Preparing to unpack .../210-r-cran-commonmark_1.9.1-1_amd64.deb ... 860s Unpacking r-cran-commonmark (1.9.1-1) ... 860s Selecting previously unselected package r-cran-lazyeval. 860s Preparing to unpack .../211-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 860s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 860s Selecting previously unselected package r-cran-rex. 860s Preparing to unpack .../212-r-cran-rex_1.2.1-1_all.deb ... 860s Unpacking r-cran-rex (1.2.1-1) ... 860s Selecting previously unselected package r-cran-curl. 860s Preparing to unpack .../213-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 860s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 860s Selecting previously unselected package r-cran-openssl. 860s Preparing to unpack .../214-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 860s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 860s Selecting previously unselected package r-cran-httr. 860s Preparing to unpack .../215-r-cran-httr_1.4.7+dfsg-1_all.deb ... 860s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 860s Selecting previously unselected package r-cran-crayon. 860s Preparing to unpack .../216-r-cran-crayon_1.5.2-1_all.deb ... 860s Unpacking r-cran-crayon (1.5.2-1) ... 860s Selecting previously unselected package r-cran-yaml. 860s Preparing to unpack .../217-r-cran-yaml_2.3.8-1_amd64.deb ... 860s Unpacking r-cran-yaml (2.3.8-1) ... 861s Selecting previously unselected package r-cran-covr. 861s Preparing to unpack .../218-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 861s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 861s Selecting previously unselected package r-cran-cpp11. 861s Preparing to unpack .../219-r-cran-cpp11_0.4.7-1_all.deb ... 861s Unpacking r-cran-cpp11 (0.4.7-1) ... 861s Selecting previously unselected package r-cran-cubelyr. 861s Preparing to unpack .../220-r-cran-cubelyr_1.0.2-1_all.deb ... 861s Unpacking r-cran-cubelyr (1.0.2-1) ... 861s Selecting previously unselected package r-cran-deldir. 861s Preparing to unpack .../221-r-cran-deldir_2.0-4-1_amd64.deb ... 861s Unpacking r-cran-deldir (2.0-4-1) ... 861s Selecting previously unselected package r-cran-desc. 861s Preparing to unpack .../222-r-cran-desc_1.4.3-1_all.deb ... 861s Unpacking r-cran-desc (1.4.3-1) ... 861s Selecting previously unselected package r-cran-diffobj. 861s Preparing to unpack .../223-r-cran-diffobj_0.3.5-1_amd64.deb ... 861s Unpacking r-cran-diffobj (0.3.5-1) ... 861s Selecting previously unselected package r-cran-evaluate. 861s Preparing to unpack .../224-r-cran-evaluate_0.23-1_all.deb ... 861s Unpacking r-cran-evaluate (0.23-1) ... 861s Selecting previously unselected package r-cran-lattice. 861s Preparing to unpack .../225-r-cran-lattice_0.22-5-1_amd64.deb ... 861s Unpacking r-cran-lattice (0.22-5-1) ... 861s Selecting previously unselected package r-cran-sp. 861s Preparing to unpack .../226-r-cran-sp_1%3a2.1-2+dfsg-1_amd64.deb ... 861s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 861s Selecting previously unselected package r-cran-terra. 861s Preparing to unpack .../227-r-cran-terra_1.7-65-1_amd64.deb ... 861s Unpacking r-cran-terra (1.7-65-1) ... 861s Selecting previously unselected package r-cran-raster. 861s Preparing to unpack .../228-r-cran-raster_3.6-26-1_amd64.deb ... 861s Unpacking r-cran-raster (3.6-26-1) ... 861s Selecting previously unselected package r-cran-exactextractr. 861s Preparing to unpack .../229-r-cran-exactextractr_0.10.0-1_amd64.deb ... 861s Unpacking r-cran-exactextractr (0.10.0-1) ... 861s Selecting previously unselected package r-cran-farver. 861s Preparing to unpack .../230-r-cran-farver_2.1.1-1_amd64.deb ... 861s Unpacking r-cran-farver (2.1.1-1) ... 861s Selecting previously unselected package r-cran-fnn. 861s Preparing to unpack .../231-r-cran-fnn_1.1.4-1_amd64.deb ... 861s Unpacking r-cran-fnn (1.1.4-1) ... 861s Selecting previously unselected package r-cran-fontawesome. 861s Preparing to unpack .../232-r-cran-fontawesome_0.5.2-1_all.deb ... 861s Unpacking r-cran-fontawesome (0.5.2-1) ... 861s Selecting previously unselected package r-cran-formula. 861s Preparing to unpack .../233-r-cran-formula_1.2-5-1_all.deb ... 861s Unpacking r-cran-formula (1.2-5-1) ... 861s Selecting previously unselected package r-cran-globals. 861s Preparing to unpack .../234-r-cran-globals_0.16.2-1_all.deb ... 861s Unpacking r-cran-globals (0.16.2-1) ... 861s Selecting previously unselected package r-cran-listenv. 861s Preparing to unpack .../235-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 861s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 861s Selecting previously unselected package r-cran-parallelly. 861s Preparing to unpack .../236-r-cran-parallelly_1.37.1-1_amd64.deb ... 861s Unpacking r-cran-parallelly (1.37.1-1) ... 862s Selecting previously unselected package r-cran-future. 862s Preparing to unpack .../237-r-cran-future_1.33.1+dfsg-1_all.deb ... 862s Unpacking r-cran-future (1.33.1+dfsg-1) ... 862s Selecting previously unselected package r-cran-future.apply. 862s Preparing to unpack .../238-r-cran-future.apply_1.11.1+dfsg-1_all.deb ... 862s Unpacking r-cran-future.apply (1.11.1+dfsg-1) ... 862s Selecting previously unselected package r-cran-gtable. 862s Preparing to unpack .../239-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 862s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 862s Selecting previously unselected package r-cran-isoband. 862s Preparing to unpack .../240-r-cran-isoband_0.2.7-1_amd64.deb ... 862s Unpacking r-cran-isoband (0.2.7-1) ... 862s Selecting previously unselected package r-cran-nlme. 862s Preparing to unpack .../241-r-cran-nlme_3.1.164-1_amd64.deb ... 862s Unpacking r-cran-nlme (3.1.164-1) ... 862s Selecting previously unselected package r-cran-matrix. 862s Preparing to unpack .../242-r-cran-matrix_1.6-5-1_amd64.deb ... 862s Unpacking r-cran-matrix (1.6-5-1) ... 862s Selecting previously unselected package r-cran-mgcv. 862s Preparing to unpack .../243-r-cran-mgcv_1.9-1-1_amd64.deb ... 862s Unpacking r-cran-mgcv (1.9-1-1) ... 862s Selecting previously unselected package r-cran-labeling. 862s Preparing to unpack .../244-r-cran-labeling_0.4.3-1_all.deb ... 862s Unpacking r-cran-labeling (0.4.3-1) ... 862s Selecting previously unselected package r-cran-munsell. 862s Preparing to unpack .../245-r-cran-munsell_0.5.0-2build1_all.deb ... 862s Unpacking r-cran-munsell (0.5.0-2build1) ... 862s Selecting previously unselected package r-cran-rcolorbrewer. 862s Preparing to unpack .../246-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 862s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 862s Selecting previously unselected package r-cran-viridislite. 862s Preparing to unpack .../247-r-cran-viridislite_0.4.2-2_all.deb ... 862s Unpacking r-cran-viridislite (0.4.2-2) ... 862s Selecting previously unselected package r-cran-scales. 862s Preparing to unpack .../248-r-cran-scales_1.3.0-1_all.deb ... 862s Unpacking r-cran-scales (1.3.0-1) ... 862s Selecting previously unselected package r-cran-ggplot2. 862s Preparing to unpack .../249-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 862s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 862s Selecting previously unselected package r-cran-tweenr. 862s Preparing to unpack .../250-r-cran-tweenr_2.0.2-1_amd64.deb ... 862s Unpacking r-cran-tweenr (2.0.2-1) ... 862s Selecting previously unselected package r-cran-polyclip. 862s Preparing to unpack .../251-r-cran-polyclip_1.10-6-1_amd64.deb ... 862s Unpacking r-cran-polyclip (1.10-6-1) ... 862s Selecting previously unselected package r-cran-systemfonts. 862s Preparing to unpack .../252-r-cran-systemfonts_1.0.5-1_amd64.deb ... 862s Unpacking r-cran-systemfonts (1.0.5-1) ... 862s Selecting previously unselected package r-cran-rcppeigen. 862s Preparing to unpack .../253-r-cran-rcppeigen_0.3.3.9.4-1_amd64.deb ... 862s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 862s Selecting previously unselected package r-cran-ggforce. 863s Preparing to unpack .../254-r-cran-ggforce_0.4.1-1_amd64.deb ... 863s Unpacking r-cran-ggforce (0.4.1-1) ... 863s Selecting previously unselected package r-cran-stringi. 863s Preparing to unpack .../255-r-cran-stringi_1.8.3-1_amd64.deb ... 863s Unpacking r-cran-stringi (1.8.3-1) ... 863s Selecting previously unselected package r-cran-stringr. 863s Preparing to unpack .../256-r-cran-stringr_1.5.1-1_all.deb ... 863s Unpacking r-cran-stringr (1.5.1-1) ... 863s Selecting previously unselected package r-cran-ggthemes. 863s Preparing to unpack .../257-r-cran-ggthemes_5.1.0-1_all.deb ... 863s Unpacking r-cran-ggthemes (5.1.0-1) ... 863s Selecting previously unselected package r-cran-goftest. 863s Preparing to unpack .../258-r-cran-goftest_1.2-3-1_amd64.deb ... 863s Unpacking r-cran-goftest (1.2-3-1) ... 863s Selecting previously unselected package r-cran-gridextra. 863s Preparing to unpack .../259-r-cran-gridextra_2.3-3build1_all.deb ... 863s Unpacking r-cran-gridextra (2.3-3build1) ... 863s Selecting previously unselected package r-cran-zoo. 863s Preparing to unpack .../260-r-cran-zoo_1.8-12-2_amd64.deb ... 863s Unpacking r-cran-zoo (1.8-12-2) ... 863s Selecting previously unselected package r-cran-sftime. 863s Preparing to unpack .../261-r-cran-sftime_0.2-0-6_all.deb ... 863s Unpacking r-cran-sftime (0.2-0-6) ... 863s Selecting previously unselected package r-cran-xts. 863s Preparing to unpack .../262-r-cran-xts_0.13.2-1_amd64.deb ... 863s Unpacking r-cran-xts (0.13.2-1) ... 863s Selecting previously unselected package r-cran-intervals. 863s Preparing to unpack .../263-r-cran-intervals_0.15.4-1_amd64.deb ... 863s Unpacking r-cran-intervals (0.15.4-1) ... 863s Selecting previously unselected package r-cran-spacetime. 863s Preparing to unpack .../264-r-cran-spacetime_1.3-1-1_all.deb ... 863s Unpacking r-cran-spacetime (1.3-1-1) ... 863s Selecting previously unselected package r-cran-stars. 863s Preparing to unpack .../265-r-cran-stars_0.6-4-1_all.deb ... 863s Unpacking r-cran-stars (0.6-4-1) ... 863s Selecting previously unselected package r-cran-gstat. 863s Preparing to unpack .../266-r-cran-gstat_2.1-1-2_amd64.deb ... 863s Unpacking r-cran-gstat (2.1-1-2) ... 863s Selecting previously unselected package r-cran-xfun. 863s Preparing to unpack .../267-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 863s Unpacking r-cran-xfun (0.41+dfsg-1) ... 863s Selecting previously unselected package r-cran-highr. 863s Preparing to unpack .../268-r-cran-highr_0.10+dfsg-1_all.deb ... 863s Unpacking r-cran-highr (0.10+dfsg-1) ... 863s Selecting previously unselected package r-cran-later. 863s Preparing to unpack .../269-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 863s Unpacking r-cran-later (1.3.2+dfsg-1) ... 863s Selecting previously unselected package r-cran-promises. 863s Preparing to unpack .../270-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 863s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 863s Selecting previously unselected package r-cran-httpuv. 863s Preparing to unpack .../271-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 863s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 863s Selecting previously unselected package libjs-mathjax. 863s Preparing to unpack .../272-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 863s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 864s Selecting previously unselected package r-cran-knitr. 864s Preparing to unpack .../273-r-cran-knitr_1.45+dfsg-1_all.deb ... 864s Unpacking r-cran-knitr (1.45+dfsg-1) ... 864s Selecting previously unselected package r-cran-lmtest. 864s Preparing to unpack .../274-r-cran-lmtest_0.9.40-1_amd64.deb ... 864s Unpacking r-cran-lmtest (0.9.40-1) ... 864s Selecting previously unselected package r-cran-lwgeom. 864s Preparing to unpack .../275-r-cran-lwgeom_0.2-13-3_amd64.deb ... 864s Unpacking r-cran-lwgeom (0.2-13-3) ... 864s Selecting previously unselected package r-cran-maps. 864s Preparing to unpack .../276-r-cran-maps_3.4.2-1_amd64.deb ... 864s Unpacking r-cran-maps (3.4.2-1) ... 864s Selecting previously unselected package r-cran-mapdata. 864s Preparing to unpack .../277-r-cran-mapdata_2.3.1-1_amd64.deb ... 864s Unpacking r-cran-mapdata (2.3.1-1) ... 865s Selecting previously unselected package r-cran-misctools. 865s Preparing to unpack .../278-r-cran-misctools_0.6-28-1_all.deb ... 865s Unpacking r-cran-misctools (0.6-28-1) ... 865s Selecting previously unselected package r-cran-sandwich. 865s Preparing to unpack .../279-r-cran-sandwich_3.1-0-1_all.deb ... 865s Unpacking r-cran-sandwich (3.1-0-1) ... 865s Selecting previously unselected package r-cran-maxlik. 865s Preparing to unpack .../280-r-cran-maxlik_1.5-2-1_all.deb ... 865s Unpacking r-cran-maxlik (1.5-2-1) ... 865s Selecting previously unselected package r-cran-rnetcdf. 865s Preparing to unpack .../281-r-cran-rnetcdf_2.9-1-1_amd64.deb ... 865s Unpacking r-cran-rnetcdf (2.9-1-1) ... 865s Selecting previously unselected package r-cran-tidyr. 865s Preparing to unpack .../282-r-cran-tidyr_1.3.1-1_amd64.deb ... 865s Unpacking r-cran-tidyr (1.3.1-1) ... 865s Selecting previously unselected package r-cran-ncmeta. 865s Preparing to unpack .../283-r-cran-ncmeta_0.3.6-1_all.deb ... 865s Unpacking r-cran-ncmeta (0.3.6-1) ... 865s Selecting previously unselected package r-cran-ncdfgeom. 865s Preparing to unpack .../284-r-cran-ncdfgeom_1.1.6+dfsg-1_all.deb ... 865s Unpacking r-cran-ncdfgeom (1.1.6+dfsg-1) ... 865s Selecting previously unselected package r-cran-pbapply. 865s Preparing to unpack .../285-r-cran-pbapply_1.7-2-1_all.deb ... 865s Unpacking r-cran-pbapply (1.7-2-1) ... 865s Selecting previously unselected package r-cran-pcict. 865s Preparing to unpack .../286-r-cran-pcict_0.5-4.4-1_amd64.deb ... 865s Unpacking r-cran-pcict (0.5-4.4-1) ... 865s Selecting previously unselected package r-cran-pkgbuild. 865s Preparing to unpack .../287-r-cran-pkgbuild_1.4.3-1_all.deb ... 865s Unpacking r-cran-pkgbuild (1.4.3-1) ... 865s Selecting previously unselected package r-cran-rprojroot. 865s Preparing to unpack .../288-r-cran-rprojroot_2.0.4-1_all.deb ... 865s Unpacking r-cran-rprojroot (2.0.4-1) ... 865s Selecting previously unselected package r-cran-pkgload. 865s Preparing to unpack .../289-r-cran-pkgload_1.3.4-1_all.deb ... 865s Unpacking r-cran-pkgload (1.3.4-1) ... 865s Selecting previously unselected package r-cran-rbibutils. 865s Preparing to unpack .../290-r-cran-rbibutils_2.2.16-1_amd64.deb ... 865s Unpacking r-cran-rbibutils (2.2.16-1) ... 865s Selecting previously unselected package r-cran-rdpack. 865s Preparing to unpack .../291-r-cran-rdpack_2.6-1_all.deb ... 865s Unpacking r-cran-rdpack (2.6-1) ... 865s Selecting previously unselected package r-cran-plm. 865s Preparing to unpack .../292-r-cran-plm_2.6-3-1_all.deb ... 865s Unpacking r-cran-plm (2.6-3-1) ... 865s Selecting previously unselected package r-cran-praise. 865s Preparing to unpack .../293-r-cran-praise_1.0.0-4build1_all.deb ... 865s Unpacking r-cran-praise (1.0.0-4build1) ... 865s Selecting previously unselected package r-cran-randomforest. 865s Preparing to unpack .../294-r-cran-randomforest_4.7-1.1-1_amd64.deb ... 865s Unpacking r-cran-randomforest (4.7-1.1-1) ... 866s Selecting previously unselected package r-cran-rematch2. 866s Preparing to unpack .../295-r-cran-rematch2_2.1.2-2build1_all.deb ... 866s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 866s Selecting previously unselected package r-cran-tinytex. 866s Preparing to unpack .../296-r-cran-tinytex_0.49-1_all.deb ... 866s Unpacking r-cran-tinytex (0.49-1) ... 866s Selecting previously unselected package libjs-modernizr. 866s Preparing to unpack .../297-libjs-modernizr_2.6.2+ds1-5_all.deb ... 866s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 866s Selecting previously unselected package r-cran-xtable. 866s Preparing to unpack .../298-r-cran-xtable_1%3a1.8-4-2_all.deb ... 866s Unpacking r-cran-xtable (1:1.8-4-2) ... 866s Selecting previously unselected package r-cran-sourcetools. 866s Preparing to unpack .../299-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 866s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 866s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 866s Preparing to unpack .../300-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 866s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 866s Selecting previously unselected package r-cran-shiny. 866s Preparing to unpack .../301-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 866s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 866s Selecting previously unselected package r-cran-rmarkdown. 866s Preparing to unpack .../302-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 866s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 866s Selecting previously unselected package r-cran-survival. 866s Preparing to unpack .../303-r-cran-survival_3.5-8-1_amd64.deb ... 866s Unpacking r-cran-survival (3.5-8-1) ... 866s Selecting previously unselected package r-cran-rpart. 866s Preparing to unpack .../304-r-cran-rpart_4.1.23-1_amd64.deb ... 866s Unpacking r-cran-rpart (4.1.23-1) ... 866s Selecting previously unselected package r-cran-spatstat.utils. 866s Preparing to unpack .../305-r-cran-spatstat.utils_3.0-4-1_amd64.deb ... 866s Unpacking r-cran-spatstat.utils (3.0-4-1) ... 866s Selecting previously unselected package r-cran-spatstat.data. 866s Preparing to unpack .../306-r-cran-spatstat.data_3.0-4-1_all.deb ... 866s Unpacking r-cran-spatstat.data (3.0-4-1) ... 866s Selecting previously unselected package r-cran-spatstat.geom. 866s Preparing to unpack .../307-r-cran-spatstat.geom_3.2-8-1_amd64.deb ... 866s Unpacking r-cran-spatstat.geom (3.2-8-1) ... 866s Selecting previously unselected package r-cran-spatstat.random. 866s Preparing to unpack .../308-r-cran-spatstat.random_3.2-2-1_amd64.deb ... 866s Unpacking r-cran-spatstat.random (3.2-2-1) ... 866s Selecting previously unselected package 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Setting up r-cran-spatstat.model (3.2-8-1) ... 870s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 870s Setting up r-cran-testthat (3.2.1-1) ... 870s Setting up r-cran-ncmeta (0.3.6-1) ... 870s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 870s Setting up r-cran-spatstat.linnet (3.1-3-1) ... 870s Setting up r-cran-spatstat (3.0-7-1) ... 870s Setting up libheif-plugin-dav1d:amd64 (1.17.6-1ubuntu1) ... 870s Setting up libheif-plugin-libde265:amd64 (1.17.6-1ubuntu1) ... 870s Setting up libheif1:amd64 (1.17.6-1ubuntu1) ... 870s Setting up libgdal34:amd64 (3.8.4+dfsg-1) ... 870s Setting up r-cran-terra (1.7-65-1) ... 870s Setting up r-cran-sf (1.0-15+dfsg-1) ... 870s Setting up r-cran-stars (0.6-4-1) ... 870s Setting up r-cran-sftime (0.2-0-6) ... 870s Setting up r-cran-areal (0.1.8+dfsg-2) ... 870s Setting up r-cran-gstat (2.1-1-2) ... 870s Setting up r-cran-raster (3.6-26-1) ... 870s Setting up r-cran-lwgeom (0.2-13-3) ... 870s Setting up r-cran-exactextractr (0.10.0-1) ... 870s Setting up r-cran-ncdfgeom (1.1.6+dfsg-1) ... 870s Processing triggers for libc-bin (2.39-0ubuntu6) ... 870s Processing triggers for man-db (2.12.0-3) ... 872s Processing triggers for install-info (7.1-3) ... 874s Reading package lists... 875s Building dependency tree... 875s Reading state information... 875s Starting pkgProblemResolver with broken count: 0 875s Starting 2 pkgProblemResolver with broken count: 0 875s Done 876s The following NEW packages will be installed: 876s autopkgtest-satdep 876s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 876s Need to get 0 B/700 B of archives. 876s After this operation, 0 B of additional disk space will be used. 876s Get:1 /tmp/autopkgtest.wAsk7p/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 876s Selecting previously unselected package autopkgtest-satdep. 876s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 98587 files and directories currently installed.) 876s Preparing to unpack .../2-autopkgtest-satdep.deb ... 876s Unpacking autopkgtest-satdep (0) ... 876s Setting up autopkgtest-satdep (0) ... 878s (Reading database ... 98587 files and directories currently installed.) 878s Removing autopkgtest-satdep (0) ... 878s autopkgtest [01:13:43]: test run-unit-test: [----------------------- 878s BEGIN TEST aggregate.R 878s 878s R version 4.3.2 (2023-10-31) -- "Eye Holes" 878s Copyright (C) 2023 The R Foundation for Statistical Computing 878s Platform: x86_64-pc-linux-gnu (64-bit) 878s 878s R is free software and comes with ABSOLUTELY NO WARRANTY. 878s You are welcome to redistribute it under certain conditions. 878s Type 'license()' or 'licence()' for distribution details. 878s 878s R is a collaborative project with many contributors. 878s Type 'contributors()' for more information and 878s 'citation()' on how to cite R or R packages in publications. 878s 878s Type 'demo()' for some demos, 'help()' for on-line help, or 878s 'help.start()' for an HTML browser interface to help. 878s Type 'q()' to quit R. 878s 878s > library(stars) 878s Loading required package: abind 878s Loading required package: sf 879s Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.3.1; sf_use_s2() is TRUE 879s > 879s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 879s + data(air) # this loads several datasets in .GlobalEnv 879s + dim(air) 879s + d = st_dimensions(station = st_set_crs(st_as_sfc(stations), 4326), time = dates) 879s + 879s + blocks = st_make_grid(st_as_sfc("POLYGON ((5.871619 47.26986, 15.03811 47.26986, 15.03811 55.05653, 5.871619 55.05653, 5.871619 47.26986))", crs = 4326), 879s + n = c(3,3)) 879s + 879s + print(aq <- st_as_stars(list(PM10 = air), dimensions = d)) 879s + print(a <- aggregate(aq, blocks, mean, na.rm = TRUE)) 879s + } 880s stars object with 2 dimensions and 1 attribute 880s attribute(s): 880s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 880s PM10 0 9.921 14.792 17.69728 21.992 274.333 157659 880s dimension(s): 880s from to offset delta refsys point 880s station 1 70 NA NA WGS 84 TRUE 880s time 1 4383 1998-01-01 1 days Date FALSE 880s values 880s station POINT (9.585911 53.67057),...,POINT (9.446661 49.24068) 880s time NULL 880s stars object with 2 dimensions and 1 attribute 880s attribute(s): 880s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 880s PM10 1 11 15.57425 18.1715 22.17197 183.271 8429 880s dimension(s): 880s from to offset delta refsys point 880s geometry 1 9 NA NA WGS 84 FALSE 880s time 1 4383 1998-01-01 1 days Date FALSE 880s values 880s geometry POLYGON ((5.871619 47.269...,...,POLYGON ((11.98261 52.460... 880s time NULL 880s > 880s > # adapted from ?read_stars: 880s > m = array(1:720, dim = c(x = 10, y = 12, t = 6)) # named dim 880s > st = st_as_stars(m) 880s > attr(st, "dimensions")$y$delta = -1 880s > attr(st, "dimensions")$y$offset = 12 880s > tm = as.Date("2019-02-19") + 1:6 880s > st = st_set_crs(st_set_dimensions(st, 3, values = tm), 4326) 880s > 880s > tmp = tempfile(fileext = ".tif") 880s > write_stars(st, tmp) 880s > 880s > (red <- setNames(read_stars(tmp, RasterIO = list(nXOff = 1, nYOff = 1, nXsize = 10, nYSize = 12, 880s + nBufXSize = 2, nBufYSize = 2)), "foo")) 880s stars object with 3 dimensions and 1 attribute 880s attribute(s): 880s Min. 1st Qu. Median Mean 3rd Qu. Max. 880s foo 33 199.25 365.5 365.5 531.75 698 880s dimension(s): 880s from to offset delta refsys point x/y 880s x 1 2 0 5 WGS 84 FALSE [x] 880s y 1 2 12 -6 WGS 84 FALSE [y] 880s band 1 6 NA NA NA NA 880s > 880s > sfc = st_set_crs(st_as_sfc(red, as_points = FALSE), st_crs(st)) 880s > (a = aggregate(st, st_sf(a = 1, geom = sfc), mean)) 880s stars object with 2 dimensions and 1 attribute 880s attribute(s): 880s Min. 1st Qu. Median Mean 3rd Qu. Max. 880s A1 28 194.25 360.5 360.5 526.75 693 880s dimension(s): 880s from to offset delta refsys point 880s geom 1 4 NA NA WGS 84 FALSE 880s t 1 6 2019-02-20 1 days Date FALSE 880s values 880s geom POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 880s t NULL 880s > (a = aggregate(st, sfc, mean)) 880s stars object with 2 dimensions and 1 attribute 880s attribute(s): 880s Min. 1st Qu. Median Mean 3rd Qu. Max. 880s A1 28 194.25 360.5 360.5 526.75 693 880s dimension(s): 880s from to offset delta refsys point 880s geometry 1 4 NA NA WGS 84 FALSE 880s t 1 6 2019-02-20 1 days Date FALSE 880s values 880s geometry POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 880s t NULL 880s > 880s > tm0 = as.Date("2019-02-19") + -1:8 880s > (a = aggregate(st, tm0, mean, na.rm = TRUE)) 880s stars object with 3 dimensions and 1 attribute 880s attribute(s): 880s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 880s A1 1 180.75 360.5 360.5 540.25 720 480 880s dimension(s): 880s from to offset delta refsys point x/y 880s time 1 10 2019-02-18 1 days Date NA 880s x 1 10 0 1 WGS 84 FALSE [x] 880s y 1 12 12 -1 WGS 84 FALSE [y] 880s > (a = aggregate(st, "days", mean, na.rm = TRUE)) 880s stars object with 3 dimensions and 1 attribute 880s attribute(s): 880s Min. 1st Qu. Median Mean 3rd Qu. Max. 880s A1 1 180.75 360.5 360.5 540.25 720 880s dimension(s): 880s from to offset delta refsys point x/y 880s time 1 6 2019-02-20 1 days Date NA 880s x 1 10 0 1 WGS 84 FALSE [x] 880s y 1 12 12 -1 WGS 84 FALSE [y] 880s > yd = function(x) as.POSIXlt(x)$yday 880s > (a = aggregate(st, yd, mean, na.rm = TRUE)) 880s stars object with 3 dimensions and 1 attribute 880s attribute(s): 880s Min. 1st Qu. Median Mean 3rd Qu. Max. 880s A1 1 180.75 360.5 360.5 540.25 720 880s dimension(s): 880s from to offset delta refsys point values x/y 880s geometry 1 6 NA NA NA NA 50,...,55 880s x 1 10 0 1 WGS 84 FALSE NULL [x] 880s y 1 12 12 -1 WGS 84 FALSE NULL [y] 880s > 880s > # with "by" geometry not overlapping x 880s > pt = st_point(c(-10,-10)) 880s > (sfc = c(sfc, st_sfc(pt, crs = st_crs(sfc)))) 880s Geometry set for 5 features 880s Geometry type: GEOMETRY 880s Dimension: XY 880s Bounding box: xmin: -10 ymin: -10 xmax: 10 ymax: 12 880s Geodetic CRS: WGS 84 880s POLYGON ((0 12, 5 12, 5 6, 0 6, 0 12)) 880s POLYGON ((5 12, 10 12, 10 6, 5 6, 5 12)) 880s POLYGON ((0 6, 5 6, 5 0, 0 0, 0 6)) 880s POLYGON ((5 6, 10 6, 10 0, 5 0, 5 6)) 880s > (a = aggregate(st, sfc, mean)) 880s POINT (-10 -10) 880s stars object with 2 dimensions and 1 attribute 880s attribute(s): 880s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 880s A1 28 194.25 360.5 360.5 526.75 693 6 880s dimension(s): 880s from to offset delta refsys point 880s geometry 1 5 NA NA WGS 84 FALSE 880s t 1 6 2019-02-20 1 days Date FALSE 880s values 880s geometry POLYGON ((0 12, 5 12, 5 6...,...,POINT (-10 -10) 880s t NULL 880s > (a = aggregate(st, st, mean)) 880s stars object with 2 dimensions and 1 attribute 880s attribute(s): 880s Min. 1st Qu. Median Mean 3rd Qu. Max. 880s A1 1 180.75 360.5 360.5 540.25 720 880s dimension(s): 880s from to offset delta refsys point 880s geometry 1 120 NA NA WGS 84 FALSE 880s t 1 6 2019-02-20 1 days Date FALSE 880s values 880s geometry POLYGON ((0 12, 1 12, 1 1...,...,POLYGON ((9 1, 10 1, 10 0... 880s t NULL 880s > 880s BEGIN TEST align.R 880s 880s R version 4.3.2 (2023-10-31) -- "Eye Holes" 880s Copyright (C) 2023 The R Foundation for Statistical Computing 880s Platform: x86_64-pc-linux-gnu (64-bit) 880s 880s R is free software and comes with ABSOLUTELY NO WARRANTY. 880s You are welcome to redistribute it under certain conditions. 880s Type 'license()' or 'licence()' for distribution details. 880s 880s R is a collaborative project with many contributors. 880s Type 'contributors()' for more information and 880s 'citation()' on how to cite R or R packages in publications. 880s 880s Type 'demo()' for some demos, 'help()' for on-line help, or 880s 'help.start()' for an HTML browser interface to help. 880s Type 'q()' to quit R. 880s 880s > suppressPackageStartupMessages(library(stars)) 881s > set.seed(1331) 881s > st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1) 881s Geometry set for 1 feature 881s Geometry type: POINT 881s Dimension: XY 881s Bounding box: xmin: 291430.8 ymin: 9111430 xmax: 291430.8 ymax: 9111430 881s Projected CRS: SIRGAS 2000 / UTM zone 25S 881s > b = st_buffer(st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1), 335) 881s POINT (291430.8 9111430) 881s > bba = stars:::st_align(st_bbox(b), st_dimensions(L7_ETMs)) 881s > 881s > plot(L7_ETMs[,,,1], extent = st_buffer(b, 20), reset = FALSE, key.pos = NULL) 881s > plot(b, add = TRUE, col = NA, border = 'red') 881s > plot(st_as_sfc(st_bbox(b)), col = NA, border = 'red', add = TRUE) 881s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 881s > st_bbox(b) 881s xmin ymin xmax ymax 881s 297116.8 9119404.1 297786.8 9120074.1 881s > bba 881s xmin ymin xmax ymax 881s 297098.3 9119392.8 297810.8 9120076.8 881s > 881s > plot(L7_ETMs[,,,1], reset = FALSE, key.pos = NULL) 881s > plot(b, col = 'red', add = TRUE) 881s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 881s > 881s > b0 = st_buffer(b, -100) 881s > L7 = st_as_stars(L7_ETMs)[b0][,,,1] |> st_normalize() 881s > bbb = stars:::st_align(st_bbox(b), st_dimensions(L7)) 881s > plot(L7, extent = st_buffer(b, 120), reset = FALSE, key.pos = NULL) 881s > plot(st_as_sfc(st_bbox(L7)), col = NA, border = 'black', add = TRUE) 881s > plot(st_as_sfc(bbb), col = NA, border = 'blue', add = TRUE) 881s > plot(b, col = NA, border = 'red', add = TRUE) 881s > 881s > all.equal(bbb, bba) 881s [1] TRUE 881s > 881s BEGIN TEST area.R 882s 882s R version 4.3.2 (2023-10-31) -- "Eye Holes" 882s Copyright (C) 2023 The R Foundation for Statistical Computing 882s Platform: x86_64-pc-linux-gnu (64-bit) 882s 882s R is free software and comes with ABSOLUTELY NO WARRANTY. 882s You are welcome to redistribute it under certain conditions. 882s Type 'license()' or 'licence()' for distribution details. 882s 882s R is a collaborative project with many contributors. 882s Type 'contributors()' for more information and 882s 'citation()' on how to cite R or R packages in publications. 882s 882s Type 'demo()' for some demos, 'help()' for on-line help, or 882s 'help.start()' for an HTML browser interface to help. 882s Type 'q()' to quit R. 882s 882s > suppressPackageStartupMessages(library(stars)) 882s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 882s > x = read_stars(tif) 882s > (a = st_area(x[,1:5,1:5])) 882s stars object with 2 dimensions and 1 attribute 882s attribute(s): 882s Min. 1st Qu. Median Mean 3rd Qu. Max. 882s area [m^2] 812.25 812.25 812.25 812.25 812.25 812.25 882s dimension(s): 882s from to offset delta refsys point x/y 882s x 1 5 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 882s y 1 5 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 882s > 882s > m = matrix(1:20, nrow = 5, ncol = 4) 882s > x = c(0, 0.5, 1, 2, 4, 5) # 6 numbers: boundaries! 882s > y = c(0.3, 0.5, 1, 2, 2.2) # 5 numbers: boundaries! 882s > (r = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 882s stars object with 2 dimensions and 1 attribute 882s attribute(s): 882s Min. 1st Qu. Median Mean 3rd Qu. Max. 882s m 1 5.75 10.5 10.5 15.25 20 882s dimension(s): 882s from to point values x/y 882s x 1 5 FALSE [0,0.5),...,[4,5) [x] 882s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 882s > # image(r, axes = TRUE, col = grey((1:20)/20)) 882s > (a = st_area(r)) 882s Missing coordinate reference system: assuming Cartesian coordinates 882s stars object with 2 dimensions and 1 attribute 882s attribute(s): 882s Min. 1st Qu. Median Mean 3rd Qu. Max. 882s area 0.1 0.2 0.325 0.475 0.5 2 882s dimension(s): 882s from to point values x/y 882s x 1 5 FALSE [0,0.5),...,[4,5) [x] 882s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 882s > #plot(a, axes = TRUE) 882s > 882s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 882s > if (s5p != "") { 882s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 882s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 882s + if (inherits(nit.c[[1]], "units")) 882s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 882s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 882s + st_crs(nit.c) = 4326 882s + print((a <- st_area(nit.c[,1:5,1:5]))) 882s + # plot(a, axes = TRUE, border = NA) 882s + } 882s > 882s BEGIN TEST crop.R 883s 883s R version 4.3.2 (2023-10-31) -- "Eye Holes" 883s Copyright (C) 2023 The R Foundation for Statistical Computing 883s Platform: x86_64-pc-linux-gnu (64-bit) 883s 883s R is free software and comes with ABSOLUTELY NO WARRANTY. 883s You are welcome to redistribute it under certain conditions. 883s Type 'license()' or 'licence()' for distribution details. 883s 883s R is a collaborative project with many contributors. 883s Type 'contributors()' for more information and 883s 'citation()' on how to cite R or R packages in publications. 883s 883s Type 'demo()' for some demos, 'help()' for on-line help, or 883s 'help.start()' for an HTML browser interface to help. 883s Type 'q()' to quit R. 883s 883s > suppressPackageStartupMessages(library(stars)) 883s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 883s > x = read_stars(tif) 883s > xy = structure(list(x = c(293253.999046018, 296400.196497684), y = c(9113801.64775462, 883s + 9111328.49619133)), .Names = c("x", "y")) 883s > pts = st_as_sf(data.frame(do.call(cbind, xy)), coords = c("x", "y"), crs = st_crs(x)) 883s > image(x, axes = TRUE) 883s > plot(st_as_sfc(st_bbox(pts)), col = NA, add = TRUE) 883s > 883s > bb = st_bbox(pts) 883s > (xx = x[bb]) 883s stars object with 3 dimensions and 1 attribute 883s attribute(s): 883s Min. 1st Qu. Median Mean 3rd Qu. Max. 883s L7_ETMs.tif 3 56 73 70.87303 89 255 883s dimension(s): 884s from to offset delta refsys point x/y 884s x 158 268 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 884s y 245 331 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 884s band 1 6 NA NA NA NA 884s > image(xx) 884s > plot(st_as_sfc(bb), add = TRUE, col = NA) 884s > st_contains(st_as_sfc(st_bbox(xx)), st_as_sfc(st_bbox(pts))) 884s Sparse geometry binary predicate list of length 1, where the predicate 884s was `contains' 884s 1: 1 884s > 884s > image(x) 884s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 884s > buf = st_buffer(st_sfc(pt, crs = st_crs(x)), 1500) 884s > plot(buf, add = TRUE) 884s > 884s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 884s + crs = st_crs(x)) 884s > image(x[buf]) 884s > plot(buf, add = TRUE, col = NA) 884s > image(x[buf,crop=FALSE]) 884s > plot(buf, add = TRUE, col = NA) 884s > 884s > plot(x, rgb = 1:3) 884s > 884s > # #638: 884s > l = st_as_stars(L7_ETMs) 884s > st_bbox(l) |> st_as_sfc() -> bb 884s > (bb + 1e6) |> st_set_crs(st_crs(l)) -> b 884s > st_crop(l, b) 885s stars object with 3 dimensions and 1 attribute 885s attribute(s): 885s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 885s L7_ETMs NA NA NA NaN NA NA 737088 885s dimension(s): 885s from to offsetWarning message: 885s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 885s delta refsys point x/y 885s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 885s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 885s band 1 6 NA NA NA NA 885s > st_intersects(b, st_as_sfc(st_bbox(l))) |> as.matrix() 885s [,1] 885s [1,] FALSE 885s > (bb - 1e6) |> st_set_crs(st_crs(l)) -> b 885s > st_crop(l, b) 886s stars object with 3 dimensions and 1 attribute 886s attribute(s): 886s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 886s L7_ETMs NA NA NA NaN NA NA 737088 886s dimension(s): 886s from to offset delta refsys point x/y 886s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 886s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 886s band 1 6 NA NA NA NA 886s > 886s Warning message: 886s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 886s BEGIN TEST curvilinear.R 886s 886s R version 4.3.2 (2023-10-31) -- "Eye Holes" 886s Copyright (C) 2023 The R Foundation for Statistical Computing 886s Platform: x86_64-pc-linux-gnu (64-bit) 886s 886s R is free software and comes with ABSOLUTELY NO WARRANTY. 886s You are welcome to redistribute it under certain conditions. 886s Type 'license()' or 'licence()' for distribution details. 886s 886s R is a collaborative project with many contributors. 886s Type 'contributors()' for more information and 886s 'citation()' on how to cite R or R packages in publications. 886s 886s Type 'demo()' for some demos, 'help()' for on-line help, or 886s 'help.start()' for an HTML browser interface to help. 886s Type 'q()' to quit R. 886s 886s > suppressPackageStartupMessages(library(stars)) 887s > 887s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 887s > if (s5p != "") { 887s + 887s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 887s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 887s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 887s + lat = read_stars(lat_ds) 887s + lon = read_stars(lon_ds) 887s + nit = read_stars(nit_ds) 887s + nit[[1]][nit[[1]] > 9e+36] = NA 887s + 887s + ll = setNames(c(lon, lat), c("x", "y")) 887s + nit.c0 = st_as_stars(nit, curvilinear = ll) 887s + 887s + # more direct method: 887s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 887s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 887s + if (inherits(nit.c[[1]], "units")) 887s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 887s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 887s + all.equal(nit.c0, nit.c) 887s + st_crs(nit.c) = 4326 887s + print(nit.c) 887s + 887s + if (FALSE && capabilities()["png"]) { 887s + png("nit1.png", 800, 800) 887s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 887s + maps::map('world', add = TRUE, col = 'red') 887s + dev.off() 887s + 887s + png("nit2.png", 800, 800) 887s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 887s + maps::map('world', add = TRUE, col = 'red') 887s + dev.off() 887s + 887s + nit.c = stars:::st_downsample(nit.c, 8) 887s + print(nit.c) 887s + 887s + png("nit3.png", 800, 800) 887s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 887s + maps::map('world', add = TRUE, col = 'red') 887s + dev.off() 887s + 887s + png("nit4.png", 800, 800) 887s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 887s + maps::map('world', add = TRUE, col = 'red') 887s + dev.off() 887s + } 887s + 887s + } 887s > 887s BEGIN TEST datasets.R 887s 887s R version 4.3.2 (2023-10-31) -- "Eye Holes" 887s Copyright (C) 2023 The R Foundation for Statistical Computing 887s Platform: x86_64-pc-linux-gnu (64-bit) 887s 887s R is free software and comes with ABSOLUTELY NO WARRANTY. 887s You are welcome to redistribute it under certain conditions. 887s Type 'license()' or 'licence()' for distribution details. 887s 887s R is a collaborative project with many contributors. 887s Type 'contributors()' for more information and 887s 'citation()' on how to cite R or R packages in publications. 887s 887s Type 'demo()' for some demos, 'help()' for on-line help, or 887s 'help.start()' for an HTML browser interface to help. 887s Type 'q()' to quit R. 887s 887s > suppressPackageStartupMessages(library(stars)) 888s > bcsd_obs 888s stars_proxy object with 2 attributes in 2 file(s): 888s $foo 888s [1] "[...]/bcsd_obs_1999.nc:pr" 888s 888s $bar 888s [1] "[...]/bcsd_obs_1999.nc:tas" 888s 888s dimension(s): 888s from to offset delta refsys values x/y 888s x 1 81 -85 0.125 NA NULL [x] 888s y 1 33 37.12 -0.125 NA NULL [y] 888s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 888s > L7_ETMs 888s stars_proxy object with 1 attribute in 1 file(s): 888s $L7_ETMs 888s [1] "[...]/L7_ETMs.tif" 888s 888s dimension(s): 888s from to offset delta refsys point x/y 888s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 888s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 888s band 1 6 NA NA NA NA 888s > if (require(starsdata, quietly = TRUE)) { 888s + print(stars_sentinel2) 888s + } 888s > 888s BEGIN TEST dimensions.R 888s 888s R version 4.3.2 (2023-10-31) -- "Eye Holes" 888s Copyright (C) 2023 The R Foundation for Statistical Computing 888s Platform: x86_64-pc-linux-gnu (64-bit) 888s 888s R is free software and comes with ABSOLUTELY NO WARRANTY. 888s You are welcome to redistribute it under certain conditions. 888s Type 'license()' or 'licence()' for distribution details. 888s 888s R is a collaborative project with many contributors. 888s Type 'contributors()' for more information and 888s 'citation()' on how to cite R or R packages in publications. 888s 888s Type 'demo()' for some demos, 'help()' for on-line help, or 888s 'help.start()' for an HTML browser interface to help. 888s Type 'q()' to quit R. 888s 888s > # https://github.com/r-spatial/stars/issues/295 888s > suppressPackageStartupMessages(library(stars)) 889s > raw <- read_stars(system.file("nc/bcsd_obs_1999.nc", package = "stars")) 889s pr, tas, 889s > foo <- function(x, idx) stats::lowess(idx, x)$y 889s > 889s > timeline <- st_get_dimension_values(raw, "time") 889s > smooth = st_apply(raw, 889s + MARGIN = c("x", "y"), 889s + FUN = foo, 889s + idx = st_get_dimension_values(raw, "time") 889s + ) 889s > 889s > st_set_dimensions(smooth, 889s + which = "foo", 889s + values = st_get_dimension_values(raw, "time"), 889s + names = "time" 889s + ) 889s stars object with 3 dimensions and 2 attributes 889s attribute(s): 889s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 889s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 889s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 889s dimension(s): 889s from to offset delta refsys values x/y 889s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 889s x 1 81 -85 0.125 NA NULL [x] 889s y 1 33 37.12 -0.125 NA NULL [y] 889s > 889s > raw %>% 889s + st_apply(MARGIN = c("x", "y"), FUN = foo, idx = timeline) %>% 889s + st_set_dimensions("foo", st_dimensions(raw)["time"]) 889s stars object with 3 dimensions and 2 attributes 889s attribute(s): 889s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 889s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 889s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 889s dimension(s): 889s from to offset delta refsys values x/y 889s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 889s x 1 81 -85 0.125 NA NULL [x] 889s y 1 33 37.12 -0.125 NA NULL [y] 889s > 889s BEGIN TEST downsample.R 889s 889s R version 4.3.2 (2023-10-31) -- "Eye Holes" 889s Copyright (C) 2023 The R Foundation for Statistical Computing 889s Platform: x86_64-pc-linux-gnu (64-bit) 889s 889s R is free software and comes with ABSOLUTELY NO WARRANTY. 889s You are welcome to redistribute it under certain conditions. 889s Type 'license()' or 'licence()' for distribution details. 889s 889s R is a collaborative project with many contributors. 889s Type 'contributors()' for more information and 889s 'citation()' on how to cite R or R packages in publications. 889s 889s Type 'demo()' for some demos, 'help()' for on-line help, or 889s 'help.start()' for an HTML browser interface to help. 889s Type 'q()' to quit R. 889s 890s > library(stars) 890s Loading required package: abind 890s Loading required package: sf 890s Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.3.1; sf_use_s2() is TRUE 890s > m = matrix(1:121, 11, 11) 890s > m 890s [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] 890s [1,] 1 12 23 34 45 56 67 78 89 100 111 890s [2,] 2 13 24 35 46 57 68 79 90 101 112 890s [3,] 3 14 25 36 47 58 69 80 91 102 113 890s [4,] 4 15 26 37 48 59 70 81 92 103 114 890s [5,] 5 16 27 38 49 60 71 82 93 104 115 890s [6,] 6 17 28 39 50 61 72 83 94 105 116 890s [7,] 7 18 29 40 51 62 73 84 95 106 117 890s [8,] 8 19 30 41 52 63 74 85 96 107 118 890s [9,] 9 20 31 42 53 64 75 86 97 108 119 890s [10,] 10 21 32 43 54 65 76 87 98 109 120 890s [11,] 11 22 33 44 55 66 77 88 99 110 121 890s > s = st_as_stars(m) 890s > st_downsample(s, 1) 890s stars object with 2 dimensions and 1 attribute 890s attribute(s): 890s Min. 1st Qu. Median Mean 3rd Qu. Max. 890s A1 1 28.5 61 61 93.5 121 890s dimension(s): 890s from to offset delta point x/y 890s X1 1 6 0 2 FALSE [x] 890s X2 1 6 0 2 FALSE [y] 890s > st_downsample(s, 1)[[1]] 890s [,1] [,2] [,3] [,4] [,5] [,6] 890s [1,] 1 23 45 67 89 111 890s [2,] 3 25 47 69 91 113 890s [3,] 5 27 49 71 93 115 890s [4,] 7 29 51 73 95 117 890s [5,] 9 31 53 75 97 119 890s [6,] 11 33 55 77 99 121 890s > st_downsample(s, 1, offset = 1) 890s stars object with 2 dimensions and 1 attribute 890s attribute(s): 890s Min. 1st Qu. Median Mean 3rd Qu. Max. 890s A1 13 37 61 61 85 109 890s dimension(s): 890s from to offset delta point x/y 890s X1 1 5 1 2 FALSE [x] 890s X2 1 5 1 2 FALSE [y] 890s > st_downsample(s, 1, offset = 1)[[1]] 890s [,1] [,2] [,3] [,4] [,5] 890s [1,] 13 35 57 79 101 890s [2,] 15 37 59 81 103 890s [3,] 17 39 61 83 105 890s [4,] 19 41 63 85 107 890s [5,] 21 43 65 87 109 890s > st_downsample(s, 1, FUN = mean) 890s stars object with 2 dimensions and 1 attribute 890s attribute(s): 890s Min. 1st Qu. Median Mean 3rd Qu. Max. 890s A1 7 31 55 55 79 103 890s dimension(s): 890s from to offset delta point x/y 890s X1 1 5 0 2 FALSE [x] 890s X2 1 5 0 2 FALSE [y] 890s > st_downsample(s, 1, FUN = mean)[[1]] 890s [,1] [,2] [,3] [,4] [,5] 890s [1,] 7 29 51 73 95 890s [2,] 9 31 53 75 97 890s [3,] 11 33 55 77 99 890s [4,] 13 35 57 79 101 890s [5,] 15 37 59 81 103 890s > st_downsample(s, 1, offset = 1, FUN = mean) 890s stars object with 2 dimensions and 1 attribute 890s attribute(s): 890s Min. 1st Qu. Median Mean 3rd Qu. Max. 890s A1 19 43 67 67 91 115 890s dimension(s): 890s from to offset delta point x/y 890s X1 1 5 1 2 FALSE [x] 890s X2 1 5 1 2 FALSE [y] 890s > st_downsample(s, 1, offset = c(0,1), FUN = mean)[[1]] 890s [,1] [,2] [,3] [,4] [,5] 890s [1,] 18 40 62 84 106 890s [2,] 20 42 64 86 108 890s [3,] 22 44 66 88 110 890s [4,] 24 46 68 90 112 890s [5,] 26 48 70 92 114 890s > st_downsample(s, 1, offset = c(0,1)) 890s stars object with 2 dimensions and 1 attribute 890s attribute(s): 890s Min. 1st Qu. Median Mean 3rd Qu. Max. 890s A1 12 36.5 61 61 85.5 110 890s dimension(s): 890s from to offset delta point x/y 890s X1 1 6 0 2 FALSE [x] 890s X2 1 5 1 2 FALSE [y] 890s > st_downsample(s, 1, offset = c(0,1))[[1]] 890s [,1] [,2] [,3] [,4] [,5] 890s [1,] 12 34 56 78 100 890s [2,] 14 36 58 80 102 890s [3,] 16 38 60 82 104 890s [4,] 18 40 62 84 106 890s [5,] 20 42 64 86 108 890s [6,] 22 44 66 88 110 890s > 890s BEGIN TEST ee.R 890s 890s R version 4.3.2 (2023-10-31) -- "Eye Holes" 890s Copyright (C) 2023 The R Foundation for Statistical Computing 890s Platform: x86_64-pc-linux-gnu (64-bit) 890s 890s R is free software and comes with ABSOLUTELY NO WARRANTY. 890s You are welcome to redistribute it under certain conditions. 890s Type 'license()' or 'licence()' for distribution details. 890s 890s R is a collaborative project with many contributors. 890s Type 'contributors()' for more information and 890s 'citation()' on how to cite R or R packages in publications. 890s 890s Type 'demo()' for some demos, 'help()' for on-line help, or 890s 'help.start()' for an HTML browser interface to help. 890s Type 'q()' to quit R. 890s 890s > # show that extract with exact=TRUE equals st_interpolate_aw(), only much faster 890s > options(digits=15) 890s > suppressPackageStartupMessages(library(stars)) 891s > L = st_as_stars(L7_ETMs)[,,,1] 891s > set.seed(123432) 891s > st_bbox(L) |> 891s + st_as_sfc() |> 891s + st_centroid() |> 891s + st_buffer(50) |> 891s + st_sample(10) |> 891s + st_combine() |> 891s + st_convex_hull() -> ch 891s > if (interactive()) { 891s + plot(L, reset = FALSE) 891s + plot(ch, add = TRUE, border = 'red', col = NA) 891s + } 891s > if (FALSE) { 891s + e = st_extract(L, ch)[[1]] 891s + a = aggregate(L, ch, mean)[[1]] 891s + identical(e, a) # same code path 891s + ee = aggregate(L, ch, mean, exact = TRUE)[[1]] 891s + all.equal(e, ee) 891s + aw = suppressWarnings(st_interpolate_aw(L, ch, extensive = FALSE)$V1) 891s + all.equal(as.vector(ee), aw) 891s + ee0 = st_extract(L, ch, exact = TRUE)[[1]] 891s + all.equal(ee0, ee) # ?? 891s + } 891s > 891s BEGIN TEST extract.R 891s 891s R version 4.3.2 (2023-10-31) -- "Eye Holes" 891s Copyright (C) 2023 The R Foundation for Statistical Computing 891s Platform: x86_64-pc-linux-gnu (64-bit) 891s 891s R is free software and comes with ABSOLUTELY NO WARRANTY. 891s You are welcome to redistribute it under certain conditions. 891s Type 'license()' or 'licence()' for distribution details. 891s 891s R is a collaborative project with many contributors. 891s Type 'contributors()' for more information and 891s 'citation()' on how to cite R or R packages in publications. 891s 891s Type 'demo()' for some demos, 'help()' for on-line help, or 891s 'help.start()' for an HTML browser interface to help. 891s Type 'q()' to quit R. 891s 892s > # Create 'stars' object 892s > set.seed(1331) 892s > suppressPackageStartupMessages(library(stars)) 892s > volcano = rbind(volcano, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA) # add NA rows 892s > d = st_dimensions(x = 1:ncol(volcano), y = 1:nrow(volcano)) 892s > (r = st_as_stars(t(volcano))) 892s stars object with 2 dimensions and 1 attribute 892s attribute(s): 892s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 892s A1 94 108 124 130.1879 150 195 732 892s dimension(s): 892s from to offset delta point x/y 892s X1 1 61 0 1 FALSE [x] 892s X2 1 99 0 1 FALSE [y] 892s > r = st_set_dimensions(r, 1, offset = 0, delta = 1) 892s > r = st_set_dimensions(r, 2, offset = nrow(volcano), delta = -1) 892s > 892s > # Create points 892s > pnt = st_sample(st_as_sfc(st_bbox(r)), 100) 892s > pnt = st_as_sf(pnt) 892s > 892s > # Extract - 'st_join' 892s > x = st_join(pnt, st_as_sf(r)) 892s > 892s > # Extract - 'st_extract' 892s > y = st_extract(r, pnt) 892s > 892s > # check there are NA's: 892s > any(is.na(x)) 892s [1] TRUE 892s > # Compare 892s > all.equal(x$A1, y[[1]]) 892s [1] TRUE 892s > 892s > ################################################ 892s > if (FALSE) { 892s + 892s + ## tic: segfaults 892s + # check equal results with stars_proxy: 892s + #x = st_extract(stars:::st_as_stars_proxy(r), pnt) 892s + #all.equal(x$A1, y[[1]]) 892s + #all.equal(x, y) 892s + 892s + r = c(r, 2*r, 10*r) 892s + x = st_join(pnt, st_as_sf(r)) 892s + y = st_as_sf(st_extract(r, pnt)) 892s + all.equal(x, y) 892s + 892s + ## tic: segfaults 892s + #x = st_extract(stars:::st_as_stars_proxy(merge(r)), pnt) 892s + #all.equal(st_as_sf(x), y) 892s + 892s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 892s + xp = read_stars(tif, proxy = TRUE) 892s + xm = read_stars(tif, proxy = FALSE) 892s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 892s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 892s + em = st_extract(xm, pts) 892s + if (utils::packageVersion("sf") >= "0.9-7") { 892s + ep = st_extract(xp, pts) 892s + print(all.equal(ep, em, check.attributes = TRUE)) 892s + } 892s + 892s + # two-attribute objects: 892s + library(stars) 892s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 892s + xp = read_stars(c(tif, tif), proxy = TRUE) 892s + xm = read_stars(c(tif, tif), proxy = FALSE) 892s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 892s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 892s + em = st_extract(xm, pts) 892s + if (utils::packageVersion("sf") >= "0.9-7") { 892s + ep = st_extract(xp, pts) 892s + print(all.equal(ep, em, check.attributes = TRUE)) 892s + } 892s + 892s + # single-attribute, single raster objects: 892s + tif1 = paste0(tempfile(), ".tif") 892s + write_stars(xm[1,,,1], "x.tif") 892s + xp = read_stars("x.tif", proxy = TRUE) 892s + xm = read_stars("x.tif", proxy = FALSE) 892s + em = st_extract(xm, pts) 892s + if (utils::packageVersion("sf") >= "0.9-7") { 892s + ep = st_extract(xp, pts) 892s + print(all.equal(ep, em, check.attributes = TRUE)) 892s + } 892s + 892s + # multiple-file attributes: 892s + x = c( 892s + "avhrr-only-v2.19810901.nc", 892s + "avhrr-only-v2.19810902.nc", 892s + "avhrr-only-v2.19810903.nc", 892s + "avhrr-only-v2.19810904.nc", 892s + "avhrr-only-v2.19810905.nc", 892s + "avhrr-only-v2.19810906.nc", 892s + "avhrr-only-v2.19810907.nc", 892s + "avhrr-only-v2.19810908.nc", 892s + "avhrr-only-v2.19810909.nc" 892s + ) 892s + file_list = system.file(paste0("netcdf/", x), package = "starsdata") 892s + if (!identical(file_list, "")) { 892s + y = read_stars(file_list, quiet = TRUE) 892s + print(y) 892s + st_crs(y) = "OGC:CRS84" 892s + pts = st_sample(st_as_sfc(st_bbox(y)), 10) 892s + em = st_extract(y, pts) 892s + 892s + (y = read_stars(file_list, quiet = TRUE, proxy = TRUE)) 892s + print(y) 892s + st_crs(y) = "OGC:CRS84" 892s + if (utils::packageVersion("sf") >= "0.9-7") { 892s + ep = st_extract(y, pts) 892s + print(all.equal(em, ep)) 892s + } 892s + } 892s + 892s + # nearest & bilinear comparison: 892s + if (utils::packageVersion("sf") >= "0.9-7") { 892s + set.seed(12331) 892s + s = st_as_stars(matrix(rnorm(16), 4)) 892s + pts = st_sample(st_as_sfc(st_bbox(s)), 10000, type = "regular") 892s + s1 = st_extract(s, pts, bilinear = FALSE) 892s + s2 = st_extract(s, pts, bilinear = TRUE) 892s + s1$s2 = s2[[1]] 892s + names(s1)[c(1,3)] = c("nearest", "bilinear") 892s + print(s1[sample(10000, 5),]) 892s + } 892s + } 892s > 892s BEGIN TEST gridtypes.R 892s 892s R version 4.3.2 (2023-10-31) -- "Eye Holes" 892s Copyright (C) 2023 The R Foundation for Statistical Computing 892s Platform: x86_64-pc-linux-gnu (64-bit) 892s 892s R is free software and comes with ABSOLUTELY NO WARRANTY. 892s You are welcome to redistribute it under certain conditions. 892s Type 'license()' or 'licence()' for distribution details. 892s 892s R is a collaborative project with many contributors. 892s Type 'contributors()' for more information and 892s 'citation()' on how to cite R or R packages in publications. 892s 892s Type 'demo()' for some demos, 'help()' for on-line help, or 892s 'help.start()' for an HTML browser interface to help. 892s Type 'q()' to quit R. 892s 893s > suppressPackageStartupMessages(library(stars)) 893s > 893s > # regular, but not spatial: 893s > d = st_dimensions(a = 1:3, b = 1:3, band = c("foo", "bar")) 893s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 893s stars object with 3 dimensions and 1 attribute 893s attribute(s): 893s Min. 1st Qu. Median Mean 3rd Qu. Max. 893s X 1 5.25 9.5 9.5 13.75 18 893s dimension(s): 893s from to offset delta point values 893s a 1 3 1 1 FALSE NULL 893s b 1 3 1 1 FALSE NULL 893s band 1 2 NA NA FALSE foo, bar 893s > as.data.frame(st, add_max=FALSE)[1:4,] 893s a b band X 893s 1 1 1 foo 1 893s 2 2 1 foo 2 893s 3 3 1 foo 3 893s 4 1 2 foo 4 893s > try(x <- st_bbox(st)) # error 893s Error in st_bbox.dimensions(st_dimensions(obj), ...) : 893s dimensions table does not have x & y, nor an sfc dimension 893s > 893s > # regular, geotransform: 893s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 893s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 893s stars object with 3 dimensions and 1 attribute 893s attribute(s): 893s Min. 1st Qu. Median Mean 3rd Qu. Max. 893s X 1 5.25 9.5 9.5 13.75 18 893s dimension(s): 893s from to offset delta point values x/y 893s x 1 3 1 1 FALSE NULL [x] 893s y 1 3 1 1 FALSE NULL [y] 893s band 1 2 NA NA FALSE foo, bar 893s > as.data.frame(st, add_max=FALSE)[1:4,] 893s x y band X 893s 1 1.5 1.5 foo 1 893s 2 2.5 1.5 foo 2 893s 3 3.5 1.5 foo 3 893s 4 1.5 2.5 foo 4 893s > as.data.frame(st, add_max=TRUE)[1:4,] 893s x y band x_max y_max X 893s 1 1 1 foo 2 2 1 893s 2 2 1 foo 3 2 2 893s 3 3 1 foo 4 2 3 893s 4 1 2 foo 2 3 4 893s > st_bbox(st) 893s xmin ymin xmax ymax 893s 1 1 4 4 893s > 893s > # rectilinear with offset given: 893s > xd = c(1, 2, 4) 893s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 893s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 893s stars object with 3 dimensions and 1 attribute 893s attribute(s): 893s Min. 1st Qu. Median Mean 3rd Qu. Max. 893s X 1 5.25 9.5 9.5 13.75 18 893s dimension(s): 893s from to offset delta point values x/y 893s x 1 3 NA NA FALSE [1,2), [2,4), [4,6) [x] 893s y 1 3 1 1 FALSE NULL [y] 893s band 1 2 NA NA FALSE foo, bar 893s > as.data.frame(st, add_max=FALSE)[1:4,] 893s x y band X 893s 1 1.5 1.5 foo 1 893s 2 3.0 1.5 foo 2 893s 3 5.0 1.5 foo 3 893s 4 1.5 2.5 foo 4 893s > as.data.frame(st, add_max=TRUE)[1:4,] 893s x y band x_max y_max X 893s 1 1 1 foo 2 2 1 893s 2 2 1 foo 4 2 2 893s 3 4 1 foo 6 2 3 893s 4 1 2 foo 2 3 4 893s > st_bbox(st) 893s xmin ymin xmax ymax 893s 1 1 6 4 893s > 893s > # rectilinear with midpoints given: 893s > xd = c(1, 2, 4) 893s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE) 893s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 893s stars object with 3 dimensions and 1 attribute 893s attribute(s): 893s Min. 1st Qu. Median Mean 3rd Qu. Max. 893s X 1 5.25 9.5 9.5 13.75 18 893s dimension(s): 893s from to offset delta point values x/y 893s x 1 3 NA NA FALSE [0.5,1.5), [1.5,3.0), [3.0,5.0) [x] 893s y 1 3 0.5 1 FALSE NULL [y] 893s band 1 2 NA NA FALSE foo, bar 893s > as.data.frame(st, add_max=FALSE)[1:4,] 893s x y band X 893s 1 1.00 1 foo 1 893s 2 2.25 1 foo 2 893s 3 4.00 1 foo 3 893s 4 1.00 2 foo 4 893s > as.data.frame(st, add_max=TRUE)[1:4,] 893s x y band x_max y_max X 893s 1 0.5 0.5 foo 1.5 1.5 1 893s 2 1.5 0.5 foo 3.0 1.5 2 893s 3 3.0 0.5 foo 5.0 1.5 3 893s 4 0.5 1.5 foo 1.5 2.5 4 893s > st_bbox(st) 893s xmin ymin xmax ymax 893s 0.5 0.5 5.0 3.5 893s > 893s > # rectilinear with midpoints given, point support 893s > xd = c(1, 2, 4) 893s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE, point = TRUE) 893s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 893s stars object with 3 dimensions and 1 attribute 893s attribute(s): 893s Min. 1st Qu. Median Mean 3rd Qu. Max. 893s X 1 5.25 9.5 9.5 13.75 18 893s dimension(s): 893s from to offset delta point values x/y 893s x 1 3 NA NA TRUE 1, 2, 4 [x] 893s y 1 3 0.5 1 TRUE NULL [y] 893s band 1 2 NA NA TRUE foo, bar 893s > as.data.frame(st, add_max=FALSE)[1:4,] 893s x y band X 893s 1 1 1 foo 1 893s 2 2 1 foo 2 893s 3 4 1 foo 3 893s 4 1 2 foo 4 893s > as.data.frame(st, add_max=TRUE)[1:4,] 893s x y band x_max y_max X 893s 1 1 0.5 foo 1 1.5 1 893s 2 2 0.5 foo 2 1.5 2 893s 3 4 0.5 foo 4 1.5 3 893s 4 1 1.5 foo 1 2.5 4 893s > st_bbox(st) 893s xmin ymin xmax ymax 893s 1.0 0.5 4.0 3.5 893s > 893s > # rectilinear with start/end given: 893s > #xd = stars:::make_intervals(start = c(1,2,4), end = c(2, 4, 8)) 893s > xd = c(1, 2, 4, 8) # one more than dim of the data array 893s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 893s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 893s stars object with 3 dimensions and 1 attribute 893s attribute(s): 893s Min. 1st Qu. Median Mean 3rd Qu. Max. 893s X 1 5.25 9.5 9.5 13.75 18 893s dimension(s): 893s from to offset delta point values x/y 893s x 1 3 NA NA FALSE [1,2), [2,4), [4,8) [x] 893s y 1 3 1 1 FALSE NULL [y] 893s band 1 2 NA NA FALSE foo, bar 893s > as.data.frame(st, add_max=FALSE)[1:4,] 893s x y band X 893s 1 1.5 1.5 foo 1 893s 2 3.0 1.5 foo 2 893s 3 6.0 1.5 foo 3 893s 4 1.5 2.5 foo 4 893s > as.data.frame(st, add_max=TRUE)[1:4,] 893s x y band x_max y_max X 893s 1 1 1 foo 2 2 1 893s 2 2 1 foo 4 2 2 893s 3 4 1 foo 8 2 3 893s 4 1 2 foo 2 3 4 893s > st_bbox(st) 893s xmin ymin xmax ymax 893s 1 1 8 4 893s > 893s > # with sfc: 893s > sfc = st_sfc(st_point(0:1), st_point(2:1), st_point(4:3)) 893s > d = st_dimensions(x = sfc, y = 1:3, band = c("foo", "bar")) 893s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 893s stars object with 3 dimensions and 1 attribute 893s attribute(s): 893s Min. 1st Qu. Median Mean 3rd Qu. Max. 893s X 1 5.25 9.5 9.5 13.75 18 893s dimension(s): 893s from to offset delta point values 893s x 1 3 NA NA TRUE POINT (0 1),...,POINT (4 3) 893s y 1 3 1 1 FALSE NULL 893s band 1 2 NA NA FALSE foo, bar 893s > as.data.frame(st, add_max=FALSE)[1:4,] 893s x y band X 893s 1 POINT (0 1) 1 foo 1 893s 2 POINT (2 1) 1 foo 2 893s 3 POINT (4 3) 1 foo 3 893s 4 POINT (0 1) 2 foo 4 893s > st_as_sf(st, long = TRUE)[1:4,] 893s Simple feature collection with 4 features and 3 fields 893s Geometry type: POINT 893s Dimension: XY 893s Bounding box: xmin: 0 ymin: 1 xmax: 4 ymax: 3 893s CRS: NA 893s y band X x 893s 1 1 foo 1 POINT (0 1) 893s 2 1 foo 2 POINT (2 1) 893s 3 1 foo 3 POINT (4 3) 893s 4 2 foo 4 POINT (0 1) 893s > st_bbox(st) 893s xmin ymin xmax ymax 893s 0 1 4 3 893s > 893s > # rotated/sheared: 893s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), affine = c(0.2, -0.2)) 893s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 893s stars object with 3 dimensions and 1 attribute 893s attribute(s): 893s Min. 1st Qu. Median Mean 3rd Qu. Max. 893s X 1 5.25 9.5 9.5 13.75 18 893s dimension(s): 893s from to offset delta point values x/y 893s x 1 3 1 1 FALSE NULL [x] 893s y 1 3 1 1 FALSE NULL [y] 893s band 1 2 NA NA FALSE foo, bar 893s sheared raster with parameters: 0.2 -0.2 893s > as.data.frame(st, add_max=FALSE)[1:4,] 893s x y X 893s 1 1.6 1.4 1 893s 2 2.6 1.2 2 893s 3 3.6 1.0 3 893s 4 1.8 2.4 4 893s > try(as.data.frame(st, add_max=TRUE)[1:4,]) # errors 893s Error in st_coordinates.stars(x, add_max = add_max, center = center, ...) : 893s add_max will not work for rotated/shared rasters 893s > st_bbox(st) 893s xmin ymin xmax ymax 893s 1.0 0.4 4.6 4.0 893s > 893s > # curvilinear: 893s > set.seed(13531) 893s > lon = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 893s > lat = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 893s > ll = setNames(c(lon, lat), c("lon", "lat")) 893s > d = st_dimensions(lon = 1:3, lat = 1:3) 893s > a = st_as_stars(list(X = array(1:9, c(3,3))), dimensions = d) 893s > (st = st_as_stars(a, curvilinear = ll)) 893s stars object with 2 dimensions and 1 attribute 893s attribute(s): 893s Min. 1st Qu. Median Mean 3rd Qu. Max. 893s X 1 3 5 5 7 9 893s dimension(s): 893s from to refsys point values x/y 893s lon 1 3 WGS 84 (CRS84) FALSE [3x3] 0.03,...,0.89 [x] 893s lat 1 3 WGS 84 (CRS84) FALSE [3x3] 0.021,...,0.89 [y] 893s curvilinear grid 893s > as.data.frame(st) 893s lon lat X 893s 1 0.89 0.250 1 893s 2 0.64 0.510 2 893s 3 0.30 0.670 3 893s 4 0.69 0.890 4 893s 5 0.47 0.890 5 893s 6 0.26 0.190 6 893s 7 0.57 0.021 7 893s 8 0.27 0.220 8 893s 9 0.03 0.340 9 893s > st_bbox(st) 893s xmin ymin xmax ymax 893s 0.030 0.021 0.890 0.890 893s > 893s > # time regular: 893s > t = as.Date("2019-01-20") + 0:3 893s > d = st_dimensions(t, sfc) 893s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 893s stars object with 2 dimensions and 1 attribute 893s attribute(s): 893s Min. 1st Qu. Median Mean 3rd Qu. Max. 893s a 1 3.75 6.5 6.5 9.25 12 893s dimension(s): 893s from to offset delta refsys point values 893s X1 1 4 2019-01-20 1 days Date FALSE NULL 893s X2 1 3 NA NA NA TRUE POINT (0 1),...,POINT (4 3) 893s > as.data.frame(st) 893s X1 X2 a 893s 1 2019-01-20 POINT (0 1) 1 893s 2 2019-01-21 POINT (0 1) 2 893s 3 2019-01-22 POINT (0 1) 3 893s 4 2019-01-23 POINT (0 1) 4 893s 5 2019-01-20 POINT (2 1) 5 893s 6 2019-01-21 POINT (2 1) 6 893s 7 2019-01-22 POINT (2 1) 7 893s 8 2019-01-23 POINT (2 1) 8 893s 9 2019-01-20 POINT (4 3) 9 893s 10 2019-01-21 POINT (4 3) 10 893s 11 2019-01-22 POINT (4 3) 11 893s 12 2019-01-23 POINT (4 3) 12 893s > 893s > # time, rectilinear 893s > t = as.Date("2019-01-20") + c(0, 2, 3, 10) 893s > d = st_dimensions(t, sfc) 893s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 893s stars object with 2 dimensions and 1 attribute 893s attribute(s): 893s Min. 1st Qu. Median Mean 3rd Qu. Max. 893s a 1 3.75 6.5 6.5 9.25 12 893s dimension(s): 893s from to refsys point values 893s X1 1 4 Date FALSE 2019-01-20,...,2019-01-30 893s X2 1 3 NA TRUE POINT (0 1),...,POINT (4 3) 893s > as.data.frame(st) 893s X1 X2 a 893s 1 2019-01-20 POINT (0 1) 1 893s 2 2019-01-22 POINT (0 1) 2 893s 3 2019-01-23 POINT (0 1) 3 893s 4 2019-01-30 POINT (0 1) 4 893s 5 2019-01-20 POINT (2 1) 5 893s 6 2019-01-22 POINT (2 1) 6 893s 7 2019-01-23 POINT (2 1) 7 893s 8 2019-01-30 POINT (2 1) 8 893s 9 2019-01-20 POINT (4 3) 9 893s 10 2019-01-22 POINT (4 3) 10 893s 11 2019-01-23 POINT (4 3) 11 893s 12 2019-01-30 POINT (4 3) 12 893s > 893s BEGIN TEST mdim.R 894s 894s R version 4.3.2 (2023-10-31) -- "Eye Holes" 894s Copyright (C) 2023 The R Foundation for Statistical Computing 894s Platform: x86_64-pc-linux-gnu (64-bit) 894s 894s R is free software and comes with ABSOLUTELY NO WARRANTY. 894s You are welcome to redistribute it under certain conditions. 894s Type 'license()' or 'licence()' for distribution details. 894s 894s R is a collaborative project with many contributors. 894s Type 'contributors()' for more information and 894s 'citation()' on how to cite R or R packages in publications. 894s 894s Type 'demo()' for some demos, 'help()' for on-line help, or 894s 'help.start()' for an HTML browser interface to help. 894s Type 'q()' to quit R. 894s 894s > Sys.setenv(TZ="") 894s > suppressPackageStartupMessages(library(stars)) 894s > matrix(1:4,2) 894s [,1] [,2] 894s [1,] 1 3 894s [2,] 2 4 894s > m = matrix(1:4,2) 894s > s = st_as_stars(m) 894s > 894s > s = st_set_dimensions(s, st_dimensions(s), xy = NULL) 894s > sfc = st_sfc(st_point(0:1), st_point(3:2)) 894s > s = st_set_dimensions(s, 1, sfc) |> st_set_crs(4326) 894s > tm = as.POSIXct("2023-03-04 12:35") + c(0, 3600) 894s > (s = st_set_dimensions(s, 2, tm)) 894s stars object with 2 dimensions and 1 attribute 894s attribute(s): 894s Min. 1st Qu. Median Mean 3rd Qu. Max. 894s A1 1 1.75 2.5 2.5 3.25 4 894s dimension(s): 894s from to offset delta refsys point 894s X1 1 2 NA NA WGS 84 TRUE 894s X2 1 2 2023-03-04 12:35:00 Universal 1 hours POSIXct FALSE 894s values 894s X1 POINT (0 1), POINT (3 2) 894s X2 NULL 894s > f = tempfile(fileext = ".nc") 894s > if (compareVersion(sf_extSoftVersion()["GDAL"], "3.4.0") > -1) { 894s + write_mdim(s, f, as_float = FALSE) 894s + s2 = read_mdim(f) 894s + print(s2) 894s + print(all.equal(s, s2, check.attributes = FALSE)) 894s + print(all.equal(s, s2)) 894s + 894s + st_crs(sfc) = st_crs(s2) 894s + st_crs(s) = st_crs(s2) 894s + tm = as.Date("2023-02-25") + 0:1 894s + sd = st_set_dimensions(s, 2, tm) 894s + print(sd) 894s + sd = st_set_dimensions(sd, 1, sfc) 894s + print(sd) 894s + f = tempfile(fileext = ".nc") 894s + write_mdim(sd, f) 894s + sd2 = read_mdim(f) 894s + print(sd2) 894s + print(all.equal(sd, sd2, check.attributes = FALSE)) 894s + print(all.equal(sd, sd2)) 894s + } 894s stars object with 2 dimensions and 1 attribute 894s attribute(s): 894s Min. 1st Qu. Median Mean 3rd Qu. Max. 894s A1 1 1.75 2.5 2.5 3.25 4 894s dimension(s): 894s from to offset delta refsys point 894s X1 1 2 NA NA WGS 84 TRUE 894s X2 1 2 2023-03-04 12:35:00 UTC 1 hours POSIXct NA 894s values 894s X1 POINT (0 1), POINT (3 2) 894s X2 NULL 894s [1] TRUE 894s [1] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"input\": 1 string mismatch >" 894s [2] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"wkt\": 1 string mismatch >" 894s [3] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"input\": 1 string mismatch > >" 894s [4] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"wkt\": 1 string mismatch > >" 894s [5] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"offset\": 'tzone' attributes are inconsistent ('' and 'UTC') >" 894s [6] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 895s stars object with 2 dimensions and 1 attribute 895s attribute(s): 895s Min. 1st Qu. Median Mean 3rd Qu. Max. 895s A1 1 1.75 2.5 2.5 3.25 4 895s dimension(s): 895s from to offset delta refsys point values 895s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 895s X2 1 2 2023-02-25 1 days Date FALSE NULL 895s stars object with 2 dimensions and 1 attribute 895s attribute(s): 895s Min. 1st Qu. Median Mean 3rd Qu. Max. 895s A1 1 1.75 2.5 2.5 3.25 4 895s dimension(s): 895s from to offset delta refsys point values 895s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 895s X2 1 2 2023-02-25 1 days Date FALSE NULL 895s stars object with 2 dimensions and 1 attribute 895s attribute(s): 895s Min. 1st Qu. Median Mean 3rd Qu. Max. 895s A1 1 1.75 2.5 2.5 3.25 4 895s dimension(s): 895s from to offset delta refsys point values 895s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 895s X2 1 2 2023-02-25 1 days Date NA NULL 895s [1] TRUE 895s [1] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 895s Warning messages: 895s 1: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 895s GDAL Error 6: SetIndexingVariable() not implemented 895s 2: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 895s GDAL Error 6: SetIndexingVariable() not implemented 895s > 895s 3: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 895s GDAL Error 6: SetIndexingVariable() not implemented 895s 4: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 895s GDAL Error 6: SetIndexingVariable() not implemented 895s BEGIN TEST nc.R 895s 895s R version 4.3.2 (2023-10-31) -- "Eye Holes" 895s Copyright (C) 2023 The R Foundation for Statistical Computing 895s Platform: x86_64-pc-linux-gnu (64-bit) 895s 895s R is free software and comes with ABSOLUTELY NO WARRANTY. 895s You are welcome to redistribute it under certain conditions. 895s Type 'license()' or 'licence()' for distribution details. 895s 895s R is a collaborative project with many contributors. 895s Type 'contributors()' for more information and 895s 'citation()' on how to cite R or R packages in publications. 895s 895s Type 'demo()' for some demos, 'help()' for on-line help, or 895s 'help.start()' for an HTML browser interface to help. 895s Type 'q()' to quit R. 895s 895s > # examples with the sf::nc polygon dataset NOT ABOUT NETCDF's, see e.g. stars.R netcdf.R 895s > suppressPackageStartupMessages(library(sf)) 895s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 895s > m = st_set_geometry(nc, NULL) 895s > n = as.matrix(m[c("BIR74", "SID74", "NWBIR74", "BIR79", "SID79", "NWBIR79")]) 895s > dim(n) = c(county = 100, var = 3, year = 2) 895s > dimnames(n) = list(county = nc$NAME, var = c("BIR", "SID", "NWBIR"), year = c(1974, 1979)) 895s > suppressPackageStartupMessages(library(stars)) 896s > (st = st_as_stars(pop = n)) 896s stars object with 3 dimensions and 1 attribute 896s attribute(s): 896s Min. 1st Qu. Median Mean 3rd Qu. Max. 896s pop 0 8 538 1657.032 1784 30757 896s dimension(s): 896s from to values 896s county 1 100 Ashe,...,Brunswick 896s var 1 3 BIR , SID , NWBIR 896s year 1 2 1974, 1979 896s > foo <- st %>% st_set_dimensions(1, st_geometry(nc)) # %>% st_set_dimensions(3, c(1974, 1979)) 896s > st %>% st_set_dimensions(1, st_geometry(nc)) %>% st_set_dimensions(names = c("geometries", "var", "year")) 896s stars object with 3 dimensions and 1 attribute 896s attribute(s): 896s Min. 1st Qu. Median Mean 3rd Qu. Max. 896s pop 0 8 538 1657.032 1784 30757 896s dimension(s): 896s from to refsys point 896s geometries 1 100 NAD27 FALSE 896s var 1 3 NA NA 896s year 1 2 NA NA 896s values 896s geometries MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 896s var BIR , SID , NWBIR 896s year 1974, 1979 896s > foo 896s stars object with 3 dimensions and 1 attribute 896s attribute(s): 896s Min. 1st Qu. Median Mean 3rd Qu. Max. 896s pop 0 8 538 1657.032 1784 30757 896s dimension(s): 896s from to refsys point 896s county 1 100 NAD27 FALSE 896s var 1 3 NA NA 896s year 1 2 NA NA 896s values 896s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 896s var BIR , SID , NWBIR 896s year 1974, 1979 896s > st_bbox(foo) 896s xmin ymin xmax ymax 896s -84.32385 33.88199 -75.45698 36.58965 896s > (x = st_as_sf(foo)) 896s Simple feature collection with 100 features and 6 fields 896s Geometry type: MULTIPOLYGON 896s Dimension: XY 896s Bounding box: xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965 896s Geodetic CRS: NAD27 896s First 10 features: 896s BIR.1974 SID.1974 NWBIR.1974 BIR.1979 SID.1979 NWBIR.1979 896s 1 1091 1 10 1364 0 19 896s 2 487 0 10 542 3 12 896s 3 3188 5 208 3616 6 260 896s 4 508 1 123 830 2 145 896s 5 1421 9 1066 1606 3 1197 896s 6 1452 7 954 1838 5 1237 896s 7 286 0 115 350 2 139 896s 8 420 0 254 594 2 371 896s 9 968 4 748 1190 2 844 896s 10 1612 1 160 2038 5 176 896s county 896s 1 MULTIPOLYGON (((-81.47276 3... 896s 2 MULTIPOLYGON (((-81.23989 3... 896s 3 MULTIPOLYGON (((-80.45634 3... 896s 4 MULTIPOLYGON (((-76.00897 3... 896s 5 MULTIPOLYGON (((-77.21767 3... 896s 6 MULTIPOLYGON (((-76.74506 3... 896s 7 MULTIPOLYGON (((-76.00897 3... 896s 8 MULTIPOLYGON (((-76.56251 3... 896s 9 MULTIPOLYGON (((-78.30876 3... 896s 10 MULTIPOLYGON (((-80.02567 3... 896s > frac = function(x) x[2] / x[1] 896s > frac2 = function(x) c(sidsr = x[2] / x[1], nwbr = x[3] / x[1]) 896s > frac2an = function(x) c(x[2] / x[1], x[3] / x[1]) 896s > st_apply(foo, c(1,3), frac) 896s stars object with 2 dimensions and 1 attribute 896s attribute(s): 896s Min. 1st Qu. Median Mean 3rd Qu. Max. 896s frac 0 0.001197874 0.001930504 0.002042241 0.002599348 0.00955414 896s dimension(s): 896s from to refsys point 896s county 1 100 NAD27 FALSE 896s year 1 2 NA NA 896s values 896s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 896s year 1974, 1979 896s > st_apply(foo, c(1,3), frac2) 896s stars object with 3 dimensions and 1 attribute 896s attribute(s): 896s Min. 1st Qu. Median Mean 3rd Qu. Max. 896s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 896s dimension(s): 896s from to refsys point 896s frac2 1 2 NA NA 896s county 1 100 NAD27 FALSE 896s year 1 2 NA NA 896s values 896s frac2 sidsr, nwbr 896s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 896s year 1974, 1979 896s > st_apply(foo, c(1,3), frac2an) 896s stars object with 3 dimensions and 1 attribute 896s attribute(s): 896s Min. 1st Qu. Median Mean 3rd Qu. Max. 896s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 896s dimension(s): 896s from to refsys point 896s frac2an 1 2 NA NA 896s county 1 100 NAD27 FALSE 896s year 1 2 NA NA 896s values 896s frac2an NULL 896s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 896s year 1974, 1979 896s > library(abind) 896s > (x = aperm(st_apply(foo, c(1,3), frac2), c(2,3,1))) 896s stars object with 3 dimensions and 1 attribute 896s attribute(s): 896s Min. 1st Qu. Median Mean 3rd Qu. Max. 896s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 896s dimension(s): 896s from to refsys point 896s county 1 100 NAD27 FALSE 896s year 1 2 NA NA 896s frac2 1 2 NA NA 896s values 896s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 896s year 1974, 1979 896s frac2 sidsr, nwbr 896s > y = aperm(st_apply(foo, c(1,3), frac2), c("county","year","frac2")) 896s > all.equal(st_dimensions(x), st_dimensions(y)) 896s [1] TRUE 896s > 896s > split(foo, 2) 896s stars object with 2 dimensions and 3 attributes 896s attribute(s): 896s Min. 1st Qu. Median Mean 3rd Qu. Max. 896s BIR 248 1176.75 2265 3761.770 4450.75 30757 896s SID 0 2.00 5 7.515 9.00 57 896s NWBIR 1 206.00 742 1201.810 1315.75 11631 896s dimension(s): 896s from to refsys point 896s county 1 100 NAD27 FALSE 896s year 1 2 NA NA 896s values 896s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 896s year 1974, 1979 896s > split(foo, 3) 896s stars object with 2 dimensions and 2 attributes 896s attribute(s): 896s Min. 1st Qu. Median Mean 3rd Qu. Max. 896s 1974 0 8 501.5 1452.367 1580.50 21588 896s 1979 0 9 614.0 1861.697 2040.25 30757 896s dimension(s): 896s from to refsys point 896s county 1 100 NAD27 FALSE 896s var 1 3 NA NA 896s values 896s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 896s var BIR , SID , NWBIR 896s > 896s > st_crs(foo) 896s Coordinate Reference System: 896s User input: NAD27 896s wkt: 896s GEOGCRS["NAD27", 896s DATUM["North American Datum 1927", 896s ELLIPSOID["Clarke 1866",6378206.4,294.978698213898, 896s LENGTHUNIT["metre",1]]], 896s PRIMEM["Greenwich",0, 896s ANGLEUNIT["degree",0.0174532925199433]], 896s CS[ellipsoidal,2], 896s AXIS["geodetic latitude (Lat)",north, 896s ORDER[1], 896s ANGLEUNIT["degree",0.0174532925199433]], 896s AXIS["geodetic longitude (Lon)",east, 896s ORDER[2], 896s ANGLEUNIT["degree",0.0174532925199433]], 896s USAGE[ 896s SCOPE["Geodesy."], 896s AREA["North and central America: Antigua and Barbuda - onshore. Bahamas - onshore plus offshore over internal continental shelf only. Belize - onshore. British Virgin Islands - onshore. Canada onshore - Alberta, British Columbia, Manitoba, New Brunswick, Newfoundland and Labrador, Northwest Territories, Nova Scotia, Nunavut, Ontario, Prince Edward Island, Quebec, Saskatchewan and Yukon - plus offshore east coast. Cuba - onshore and offshore. El Salvador - onshore. Guatemala - onshore. Honduras - onshore. Panama - onshore. Puerto Rico - onshore. Mexico - onshore plus offshore east coast. Nicaragua - onshore. United States (USA) onshore and offshore - Alabama, Alaska, Arizona, Arkansas, California, Colorado, Connecticut, Delaware, Florida, Georgia, Idaho, Illinois, Indiana, Iowa, Kansas, Kentucky, Louisiana, Maine, Maryland, Massachusetts, Michigan, Minnesota, Mississippi, Missouri, Montana, Nebraska, Nevada, New Hampshire, New Jersey, New Mexico, New York, North Carolina, North Dakota, Ohio, Oklahoma, Oregon, Pennsylvania, Rhode Island, South Carolina, South Dakota, Tennessee, Texas, Utah, Vermont, Virginia, Washington, West Virginia, Wisconsin and Wyoming - plus offshore . US Virgin Islands - onshore."], 896s BBOX[7.15,167.65,83.17,-47.74]], 896s ID["EPSG",4267]] 896s > plot(foo) 896s > 896s > # subset vector cube: 896s > foo[nc[1]] 896s stars object with 3 dimensions and 1 attribute 896s attribute(s): 896s Min. 1st Qu. Median Mean 3rd Qu. Max. 896s pop 0 8 538 1657.032 1784 30757 896s dimension(s): 896s from to refsys point 896s county 1 100 NAD27 FALSE 896s var 1 3 NA NA 896s year 1 2 NA NA 896s values 896s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 896s var BIR , SID , NWBIR 896s year 1974, 1979 896s > 896s BEGIN TEST plot.R 896s 896s R version 4.3.2 (2023-10-31) -- "Eye Holes" 896s Copyright (C) 2023 The R Foundation for Statistical Computing 896s Platform: x86_64-pc-linux-gnu (64-bit) 896s 896s R is free software and comes with ABSOLUTELY NO WARRANTY. 896s You are welcome to redistribute it under certain conditions. 896s Type 'license()' or 'licence()' for distribution details. 896s 896s R is a collaborative project with many contributors. 896s Type 'contributors()' for more information and 896s 'citation()' on how to cite R or R packages in publications. 896s 896s Type 'demo()' for some demos, 'help()' for on-line help, or 896s 'help.start()' for an HTML browser interface to help. 896s Type 'q()' to quit R. 896s 896s > suppressPackageStartupMessages(library(stars)) 897s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 897s + data(air) # this loads several datasets in .GlobalEnv 897s + dim(air) 897s + d = st_dimensions(station = st_as_sfc(stations), time = dates) 897s + aq = st_as_stars(list(PM10 = air), dimensions = d) 897s + image(aperm(log(aq), 2:1), main = "NA pattern (white) in PM10 station time series") 897s + st_geometry(aq) 897s + } 898s Geometry set for 70 features 898s Geometry type: POINT 898s Dimension: XY 898s Bounding box: xmin: 6.28107 ymin: 47.80847 xmax: 14.78617 ymax: 54.92497 898s Geodetic CRS: +proj=longlat +datum=WGS84 +no_defs 898s First 5 geometries: 898s POINT (9.585911 53.67057) 898s POINT (9.68503 53.52418) 898s POINT (9.791584 54.07312) 898s POINT (13.64701 52.44775) 898s POINT (13.29635 52.65315) 898s > 898s > csv = system.file("tif/ESACCI-LC-Legend.csv", package = "starsdata") 898s > if (csv != "") { 898s + rgb = read.csv(csv, header = TRUE, sep = ";") 898s + luc = read_stars(system.file("tif/LUC3.tif", package = "starsdata")) 898s + plot(luc, rgb = rgb, axes = TRUE, key.pos = NULL) 898s + } 898s > 898s > # https://github.com/r-spatial/stars/issues/233 : 898s > nc = read_sf(system.file("shape/nc.shp", package = "sf")) 898s > output = st_as_stars(st_bbox(nc), nx = 1, ny = 1, values = 1) 898s > plot(output) 898s > 898s Warning message: 898s In plot.stars(output) : 898s breaks="quantile" leads to a single class; maybe try breaks="equal" instead? 898s BEGIN TEST predict.R 898s 898s R version 4.3.2 (2023-10-31) -- "Eye Holes" 898s Copyright (C) 2023 The R Foundation for Statistical Computing 898s Platform: x86_64-pc-linux-gnu (64-bit) 898s 898s R is free software and comes with ABSOLUTELY NO WARRANTY. 898s You are welcome to redistribute it under certain conditions. 898s Type 'license()' or 'licence()' for distribution details. 898s 898s R is a collaborative project with many contributors. 898s Type 'contributors()' for more information and 898s 'citation()' on how to cite R or R packages in publications. 898s 898s Type 'demo()' for some demos, 'help()' for on-line help, or 898s 'help.start()' for an HTML browser interface to help. 898s Type 'q()' to quit R. 898s 898s > suppressPackageStartupMessages(library(stars)) 899s > # predict: 899s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 899s > (x = read_stars(tif)) 899s stars object with 3 dimensions and 1 attribute 899s attribute(s): 899s Min. 1st Qu. Median Mean 3rd Qu. Max. 899s L7_ETMs.tif 1 54 69 68.91242 86 255 899s dimension(s): 899s from to offset delta refsys point x/y 899s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 899s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 899s band 1 6 NA NA NA NA 899s > st_crs(x) = st_crs(x) # cleans trailing space 899s > model = lm(x~L7_ETMs.tif, head(as.data.frame(x), 50)) 899s > x = predict(x, model) 900s > 900s > (y = read_stars(tif, proxy = TRUE)) 900s stars_proxy object with 1 attribute in 1 file(s): 900s $L7_ETMs.tif 900s [1] "[...]/L7_ETMs.tif" 900s 900s dimension(s): 900s from to offset delta refsys point x/y 900s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 900s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 900s band 1 6 NA NA NA NA 900s > (yp = predict(y, model)) 900s stars_proxy object with 1 attribute in 1 file(s): 900s $L7_ETMs.tif 900s [1] "[...]/L7_ETMs.tif" 900s 900s dimension(s): 900s from to offset delta refsys point x/y 900s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 900s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 900s band 1 6 NA NA NA NA 900s call_list: 900s [[1]] 900s predict(object = object, model = model) 900s attr(,".Environment") 900s 900s 900s This object has pending lazy operations: dimensions as printed may not reflect this. 900s > all.equal(x, st_as_stars(yp)) 901s [1] TRUE 901s > 901s > yy = st_set_dimensions(y, 3, values = paste0("band", 1:6)) 901s > (y_spl = split(yy, 3)) 901s stars_proxy object with 1 attribute in 1 file(s): 901s $L7_ETMs.tif 901s [1] "[...]/L7_ETMs.tif" 901s 901s dimension(s): 901s from to offset delta refsys point values 901s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 901s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 901s band 1 6 NA NA NA NA band1,...,band6 901s x/y 901s x [x] 901s y [y] 901s band 901s call_list: 901s [[1]] 901s split(x = x, 3) 901s attr(,".Environment") 901s 901s 901s This object has pending lazy operations: dimensions as printed may not reflect this. 901s > as.data.frame(st_as_stars(split(yy, 3)))[1:3,] 901s x y band1 band2 band3 band4 band5 band6 901s 1 288790.5 9120747 69 56 46 79 86 46 901s 2 288819.0 9120747 69 57 49 75 88 49 901s 3 288847.5 9120747 63 52 45 66 75 41 901s > 901s BEGIN TEST proxy.R 901s 901s R version 4.3.2 (2023-10-31) -- "Eye Holes" 901s Copyright (C) 2023 The R Foundation for Statistical Computing 901s Platform: x86_64-pc-linux-gnu (64-bit) 901s 901s R is free software and comes with ABSOLUTELY NO WARRANTY. 901s You are welcome to redistribute it under certain conditions. 901s Type 'license()' or 'licence()' for distribution details. 901s 901s R is a collaborative project with many contributors. 901s Type 'contributors()' for more information and 901s 'citation()' on how to cite R or R packages in publications. 901s 901s Type 'demo()' for some demos, 'help()' for on-line help, or 901s 'help.start()' for an HTML browser interface to help. 901s Type 'q()' to quit R. 901s 901s > Sys.setenv(TZ="UTC") 901s > suppressPackageStartupMessages(library(sf)) 902s > suppressPackageStartupMessages(library(stars)) 902s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 902s > (r = read_stars(tif, proxy = TRUE)) 902s stars_proxy object with 1 attribute in 1 file(s): 902s $L7_ETMs.tif 902s [1] "[...]/L7_ETMs.tif" 902s 902s dimension(s): 902s from to offset delta refsys point x/y 902s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 902s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 902s band 1 6 NA NA NA NA 902s > if (interactive()) { 902s + plot(r) 902s + } 902s > dim(r) 902s x y band 902s 349 352 6 902s > r[,,,2:3] 902s stars_proxy object with 1 attribute in 1 file(s): 902s $L7_ETMs.tif 902s [1] "[...]/L7_ETMs.tif" 902s 902s dimension(s): 902s from to offset delta refsys point x/y 902s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 902s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 902s band 2 3 NA NA NA NA 902s > r+r 902s stars_proxy object with 1 attribute in 1 file(s): 902s $L7_ETMs.tif 902s [1] "[...]/L7_ETMs.tif" 902s 902s dimension(s): 902s from to offset delta refsys point x/y 902s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 902s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 902s band 1 6 NA NA NA NA 902s call_list: 902s [[1]] 902s e1 + e2 902s attr(,".Environment") 902s 902s 902s This object has pending lazy operations: dimensions as printed may not reflect this. 902s > st_as_stars(sin(r), downsample = 2) 902s stars object with 3 dimensions and 1 attribute 902s attribute(s): 902s Min. 1st Qu. Median Mean 3rd Qu. Max. 902s L7_ETMs.tif -0.9999902 -0.676772 0.0353983 0.01655317 0.7210377 0.9999119 902s dimension(s): 902s from to offset delta refsys point x/y 902s x 1 117 288776 85.01 SIRGAS 2000 / UTM zone 25S FALSE [x] 902s y 1 118 9120761 -85.02 SIRGAS 2000 / UTM zone 25S FALSE [y] 902s band 1 6 NA NA NA NA 902s > aperm(r, c(3,2,1)) 902s stars_proxy object with 1 attribute in 1 file(s): 902s $L7_ETMs.tif 902s [1] "[...]/L7_ETMs.tif" 902s 902s dimension(s): 902s from to offset delta refsys point x/y 902s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 902s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 902s band 1 6 NA NA NA NA 902s call_list: 902s [[1]] 902s aperm(a = a, perm = perm) 902s attr(,".Environment") 902s 902s 902s This object has pending lazy operations: dimensions as printed may not reflect this. 902s > if (interactive()) { 902s + plot(r) 902s + } 902s > (xx = c(r,r)) 902s stars_proxy object with 2 attributes in 2 file(s): 902s $L7_ETMs.tif 902s [1] "[...]/L7_ETMs.tif" 902s 902s $L7_ETMs.tif 902s [1] "[...]/L7_ETMs.tif" 902s 902s dimension(s): 902s from to offset delta refsys point x/y 902s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 902s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 902s band 1 6 NA NA NA NA 902s > st_redimension(xx) 902s stars_proxy object with 1 attribute in 2 file(s): 902s $L7_ETMs.tif.L7_ETMs.tif 902s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 902s 902s dimension(s): 902s from to offset delta refsys point 902s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 902s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 902s band 1 6 NA NA NA NA 902s new_dim 1 2 NA NA NA NA 902s values x/y 902s x NULL [x] 902s y NULL [y] 902s band NULL 902s new_dim L7_ETMs.tif, L7_ETMs.tif 902s > st_as_stars(r) 902s stars object with 3 dimensions and 1 attribute 902s attribute(s): 902s Min. 1st Qu. Median Mean 3rd Qu. Max. 902s L7_ETMs.tif 1 54 69 68.91242 86 255 902s dimension(s): 902s from to offset delta refsys point x/y 902s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 902s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 902s band 1 6 NA NA NA NA 902s > (y = st_apply(r, 1:2, max)) 902s stars_proxy object with 1 attribute in 1 file(s): 902s $L7_ETMs.tif 902s [1] "[...]/L7_ETMs.tif" 902s 902s dimension(s): 902s from to offset delta refsys point x/y 902s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 902s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 902s band 1 6 NA NA NA NA 902s call_list: 902s [[1]] 902s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 902s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 902s attr(,".Environment") 902s 902s 902s This object has pending lazy operations: dimensions as printed may not reflect this. 902s > (yy = st_as_stars(y, downsample = 1)) 902s stars object with 2 dimensions and 1 attribute 902s attribute(s): 902s Min. 1st Qu. Median Mean 3rd Qu. Max. 902s max 55 85 96 99.38568 113 255 902s dimension(s): 902s from to offset delta refsys point x/y 902s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 902s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 902s > (y = adrop(st_apply(r, c("x", "y"), max))) 902s stars_proxy object with 1 attribute in 1 file(s): 902s $L7_ETMs.tif 902s [1] "[...]/L7_ETMs.tif" 902s 902s dimension(s): 902s from to offset delta refsys point x/y 902s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 902s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 902s band 1 6 NA NA NA NA 902s call_list: 902s [[1]] 902s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 902s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 902s attr(,".Environment") 902s 902s 902s [[2]] 902s adrop(x = x, drop = drop) 902s attr(,".Environment") 902s 902s 902s This object has pending lazy operations: dimensions as printed may not reflect this. 902s > (yy = st_as_stars(y, downsample = 1)) 902s stars object with 2 dimensions and 1 attribute 902s attribute(s): 902s Min. 1st Qu. Median Mean 3rd Qu. Max. 902s max 55 85 96 99.38568 113 255 902s dimension(s): 903s from to offset delta refsys point x/y 903s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 903s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 903s > plot(yy) 903s > (y = adrop(st_apply(r, c("x", "band"), max))) 903s stars_proxy object with 1 attribute in 1 file(s): 903s $L7_ETMs.tif 903s [1] "[...]/L7_ETMs.tif" 903s 903s dimension(s): 903s from to offset delta refsys point x/y 903s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 903s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 903s band 1 6 NA NA NA NA 903s call_list: 903s [[1]] 903s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 903s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 903s attr(,".Environment") 903s 903s 903s [[2]] 903s adrop(x = x, drop = drop) 903s attr(,".Environment") 903s 903s 903s This object has pending lazy operations: dimensions as printed may not reflect this. 903s > (yy = st_as_stars(y, downsample = 1)) 903s stars object with 2 dimensions and 1 attribute 903s attribute(s): 903s Min. 1st Qu. Median Mean 3rd Qu. Max. 903s max 77 111 133 137.8505 157 255 903s dimension(s): 903s from to offset delta refsys point 903s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE 903s band 1 6 NA NA NA NA 903s Warning message: 903s In FUN(X[[i]], ...) : 903s st_apply on x/y dimensions applied to downsampled image(s) 903s > rm(yy) 903s > 903s > (xx = c(r,r)) 903s stars_proxy object with 2 attributes in 2 file(s): 903s $L7_ETMs.tif 903s [1] "[...]/L7_ETMs.tif" 903s 903s $L7_ETMs.tif 903s [1] "[...]/L7_ETMs.tif" 903s 903s dimension(s): 903s from to offset delta refsys point x/y 903s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 903s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 903s band 1 6 NA NA NA NA 903s > names(xx) = c("a", "b") 903s > xx["a"] 903s stars_proxy object with 1 attribute in 1 file(s): 903s $a 903s [1] "[...]/L7_ETMs.tif" 903s 903s dimension(s): 903s from to offset delta refsys point x/y 903s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 903s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 903s band 1 6 NA NA NA NA 903s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 903s > buf = st_buffer(st_sfc(pt, crs = st_crs(r)), 1500) 903s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 903s + crs = st_crs(r)) 903s > r = r[buf] # crops 903s > r = r[buf, epsilon = 1e-5] # crops with shrinked bounding box 903s > 903s > # c: 903s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 903s > if (FALSE && f != "") { 903s + files = c("avhrr-only-v2.19810901.nc", 903s + "avhrr-only-v2.19810902.nc", 903s + "avhrr-only-v2.19810903.nc", 903s + "avhrr-only-v2.19810904.nc", 903s + "avhrr-only-v2.19810905.nc", 903s + "avhrr-only-v2.19810906.nc", 903s + "avhrr-only-v2.19810907.nc", 903s + "avhrr-only-v2.19810908.nc", 903s + "avhrr-only-v2.19810909.nc") 903s + l = list() 903s + for (f in files) { 903s + from = system.file(paste0("netcdf/", f), package = "starsdata") 903s + l[[f]] = read_stars(from, sub = c("sst", "anom"), proxy = TRUE) 903s + } 903s + ret = do.call(c, l) 903s + print(ret) 903s + all = system.file(paste0("netcdf/", files), package = "starsdata") 903s + ret = read_stars(all, sub = c("sst", "anom")) 903s + print(ret) 903s + print(st_redimension(ret)) # collapse the two attributes into new dimension 903s + 903s + try(ret <- c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 903s + #print(ret) 903s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 903s + #print(ret) 903s + ret <- st_redimension(l[[1]], along = list(times = as.Date("1981-09-01") + 0:1)) 903s + print(ret) 903s + } 903s > 903s > # demonstrate that environments work: 903s > x = read_stars(tif, proxy = TRUE) 903s > f = function(x) { 903s + g = function(xx) { 903s + ndvi = function(z1, z2, z3, z4, z5, z6) (z2-z1)/(z2+z1) 903s + st_apply(xx, 1:2, ndvi) 903s + } 903s + g(x) 903s + } 903s > (x = f(x)) 903s stars_proxy object with 1 attribute in 1 file(s): 903s $L7_ETMs.tif 903s [1] "[...]/L7_ETMs.tif" 903s 903s dimension(s): 903s from to offset delta refsys point x/y 903s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 903s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 903s band 1 6 NA NA NA NA 903s call_list: 903s [[1]] 903s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 903s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 903s attr(,".Environment") 903s 903s 903s This object has pending lazy operations: dimensions as printed may not reflect this. 903s > st_as_stars(x) 903s stars object with 2 dimensions and 1 attribute 903s attribute(s): 903s Min. 1st Qu. Median Mean 3rd Qu. Max. 903s ndvi -0.2828283 -0.1081081 -0.08287293 -0.08464615 -0.05882353 0.09259259 903s dimension(s): 903s from to offset delta refsys point x/y 903s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 903s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 903s > 903s BEGIN TEST raster.R 903s 903s R version 4.3.2 (2023-10-31) -- "Eye Holes" 903s Copyright (C) 2023 The R Foundation for Statistical Computing 903s Platform: x86_64-pc-linux-gnu (64-bit) 903s 903s R is free software and comes with ABSOLUTELY NO WARRANTY. 903s You are welcome to redistribute it under certain conditions. 903s Type 'license()' or 'licence()' for distribution details. 903s 903s R is a collaborative project with many contributors. 903s Type 'contributors()' for more information and 903s 'citation()' on how to cite R or R packages in publications. 903s 903s Type 'demo()' for some demos, 'help()' for on-line help, or 903s 'help.start()' for an HTML browser interface to help. 903s Type 'q()' to quit R. 903s 903s > options(rgdal_show_exportToProj4_warnings = "none") 903s > suppressPackageStartupMessages(library(stars)) 904s > 904s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require("raster", quietly = TRUE) && 904s + suppressPackageStartupMessages(require("terra", quietly = TRUE))) { 904s + 904s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 904s + (x = read_stars(tif)) 904s + (r = as(x, "Raster")) 904s + (y = st_as_stars(r)) 904s + 904s + # single band: 904s + x = adrop(x[,,,1]) 904s + r = as(x, "Raster") 904s + (y = st_as_stars(r)) 904s + 904s + # proxy: 904s + (x = read_stars(tif, proxy = TRUE)) 904s + (r = as(x, "Raster")) 904s + (y = st_as_stars(r)) 904s + (y2 = st_as_stars(r, proxy = TRUE)) 904s + } 908s stars_proxy object with 1 attribute in 1 file(s): 908s $L7_ETMs.tif 908s [1] "[...]/L7_ETMs.tif" 908s 908s dimension(s): 908s from to offset delta refsys point x/y 908s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 908s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 908s band 1 6 NA NA NA NA 908s > 908s > if (require(terra, quietly = TRUE)) { 908s + ## terra ------------- 908s + stopifnot(require(terra)) 908s + (x = read_stars(tif)) 908s + (r = as(x, "SpatRaster")) 908s + (y = st_as_stars(r)) 908s + 908s + # single band: 908s + x = adrop(x[,,,1]) 908s + r = as(x, "SpatRaster") 908s + (y = st_as_stars(r)) 908s + 908s + # proxy: 908s + (x = read_stars(tif, proxy = TRUE)) 908s + (r = as(x, "SpatRaster")) 908s + (y = st_as_stars(r)) 908s + (y2 = st_as_stars(r, proxy = TRUE)) 908s + 908s + f = system.file("tif/lc.tif", package = "stars") 908s + lc = read_stars(system.file("tif/lc.tif", package = "stars")) 908s + levels(lc[[1]]) 908s + r = rast(lc) 908s + e = attr(lc[[1]], "exclude") 908s + 908s + if (packageVersion("terra") >= "1.5.48") { 908s + 908s + print(all.equal(terra::levels(r)[[1]][,2], terra::levels(rast(f))[[1]][!e,2])) 908s + print(all.equal(terra::coltab(r)[[1]][!e,], terra::coltab(rast(f))[[1]][!e,], check.attributes = FALSE)) 908s + 908s + r<- rast(nrow=10, ncol=10) 908s + set.seed(5) 908s + values(r)<- sample(1:3, size = ncell(r), replace = TRUE) 908s + levels(r) <- data.frame(ID=1:3, category = c("c1", "c2", "c3")) 908s + 908s + r2<- rast(nrow=10, ncol=10) 908s + set.seed(6) 908s + values(r2)<- sample(c(0,2,3), size = ncell(r2), replace = TRUE) 908s + levels(r2) <- data.frame(ID=c(0,2,3), category = c("x1", "x2", "x3")) 908s + 908s + r3<- c(r,r2) 908s + names(r3)<- c("lyr.1", "lyr.2") 908s + 908s + r3_stars<- st_as_stars(r3) 908s + 908s + st_redimension(r3_stars) |> print() 908s + rast(r3_stars) |> levels() |> print() 908s + 908s + m = matrix(1:121, 11, 11) 908s + bb = st_bbox(c(xmin=0, xmax=11, ymin=0, ymax=11)) 908s + s = st_as_stars(bb, values = m) 908s + r = rast(s) 908s + aggregate(r, 2) |> st_as_stars() -> r.s 908s + stopifnot(isTRUE(all.equal(r.s[,1:5,1:5], st_downsample(s, 1, FUN = mean)))) 908s + } 908s + } 909s [1] TRUE 909s [1] TRUE 909s stars object with 3 dimensions and 1 attribute 909s attribute(s): 909s lyr.1.lyr.2 909s c1:34 909s c2:32 909s c3:34 909s x1:28 909s x2:37 909s x3:35 909s dimension(s): 909s from to offset delta refsys values x/y 909s x 1 10 -180 36 WGS 84 (CRS84) NULL [x] 909s y 1 10 90 -18 WGS 84 (CRS84) NULL [y] 909s new_dim 1 2 NA NA NA lyr.1, lyr.2 909s [[1]] 909s IDs categories 909s 1 1 c1 909s 2 2 c2 909s 3 3 c3 909s 909s [[2]] 909s IDs categories 909s 1 0 x1 909s 2 2 x2 909s 3 3 x3 909s 909s > 909s > 909s BEGIN TEST rasterize.R 909s 909s R version 4.3.2 (2023-10-31) -- "Eye Holes" 909s Copyright (C) 2023 The R Foundation for Statistical Computing 909s Platform: x86_64-pc-linux-gnu (64-bit) 909s 909s R is free software and comes with ABSOLUTELY NO WARRANTY. 909s You are welcome to redistribute it under certain conditions. 909s Type 'license()' or 'licence()' for distribution details. 909s 909s R is a collaborative project with many contributors. 909s Type 'contributors()' for more information and 909s 'citation()' on how to cite R or R packages in publications. 909s 909s Type 'demo()' for some demos, 'help()' for on-line help, or 909s 'help.start()' for an HTML browser interface to help. 909s Type 'q()' to quit R. 909s 909s > suppressPackageStartupMessages(library(stars)) 910s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 910s > (x = st_rasterize(nc)) # default grid: 910s stars object with 2 dimensions and 12 attributes 910s attribute(s): 910s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 910s AREA 0.042 0.108 0.142 1.451932e-01 0.181 0.241 30904 910s PERIMETER 0.999 1.461 1.716 1.786110e+00 2.004 3.640 30904 910s CNTY_ 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 910s CNTY_ID 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 910s FIPSNO 37001.000 37049.000 37101.000 3.710042e+04 37153.000 37199.000 30904 910s CRESS_ID 1.000 25.000 51.000 5.071206e+01 77.000 100.000 30904 910s BIR74 248.000 1323.000 2648.000 3.791637e+03 4139.000 21588.000 30904 910s SID74 0.000 3.000 5.000 7.891985e+00 10.000 44.000 30904 910s NWBIR74 1.000 297.000 844.000 1.246210e+03 1396.000 8027.000 30904 910s BIR79 319.000 1606.000 3108.000 4.852046e+03 5400.000 30757.000 30904 910s SID79 0.000 3.000 6.000 9.584098e+00 13.000 57.000 30904 910s NWBIR79 3.000 360.000 1058.000 1.604642e+03 1524.000 11631.000 30904 910s dimension(s): 910s from to offset delta refsys point x/y 910s x 1 461 -84.32 0.01925 NAD27 FALSE [x] 910s y 1 141 36.59 -0.01925 NAD27 FALSE [y] 910s > plot(x, axes = TRUE) 911s > # a bit more customized grid: 911s > (x = st_rasterize(nc, st_as_stars(st_bbox(nc), nx = 100, ny = 50, values = NA_real_))) 911s stars object with 2 dimensions and 12 attributes 911s attribute(s): 911s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 911s AREA 0.042 0.108 0.142 0.145536 0.181 0.241 2373 911s PERIMETER 0.999 1.470 1.716 1.789032 2.004 3.640 2373 911s CNTY_ 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 911s CNTY_ID 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 911s FIPSNO 37001.000 37049.000 37101.000 37100.327750 37151.000 37199.000 2373 911s CRESS_ID 1.000 25.000 51.000 50.663875 76.000 100.000 2373 911s BIR74 248.000 1323.500 2648.000 3790.530263 4139.000 21588.000 2373 911s SID74 0.000 3.000 5.000 7.905976 10.000 44.000 2373 911s NWBIR74 1.000 289.000 844.000 1246.116483 1396.000 8027.000 2373 911s BIR79 319.000 1606.000 3108.000 4848.231062 5386.000 30757.000 2373 911s SID79 0.000 3.000 6.000 9.574419 13.000 57.000 2373 911s NWBIR79 3.000 360.000 1058.000 1602.740769 1524.000 11631.000 2373 911s dimension(s): 911s from to offset delta refsys point x/y 911s x 1 100 -84.32 0.08867 NAD27 FALSE [x] 911s y 1 50 36.59 -0.05415 NAD27 FALSE [y] 911s > plot(x, axes = TRUE) 911s > (ls = st_sf(a = 1:2, st_sfc(st_linestring(rbind(c(0.1, 0), c(1.1, 1))), st_linestring(rbind(c(0, 0.05), c(1, 0.05)))))) 911s Simple feature collection with 2 features and 1 field 911s Geometry type: LINESTRING 911s Dimension: XY 911s Bounding box: xmin: 0 ymin: 0 xmax: 1.1 ymax: 1 911s CRS: NA 911s a 911s 1 1 911s 2 2 911s c..st_sfc.st_linestring.rbind.c.0.1..0...c.1.1..1.....st_linestring.rbind.c.0..........0.05...c.1..0.05...... 911s 1 LINESTRING (0.1 0, 1.1 1) 911s 2 LINESTRING (0 0.05, 1 0.05) 911s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = NA_real_)) 911s stars object with 2 dimensions and 1 attribute 911s attribute(s): 911s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 911s values NA NA NA NaN NA NA 100 911s dimension(s): 911s from to offset delta x/y 911s x 1 10 0 0.1 [x] 911s y 1 10 1 -0.1 [y] 911s > # the following two plots confirm that (only) the 911s > # upper-left corner is part of the grid cell (when dy is negative), leading 911s > # to a seemingly half-gridcell-shift problem: 911s > ## sf_extSoftVersion()["GDAL"] 911s > plot(st_rasterize(ls, grd), axes = TRUE, reset = FALSE) # ALL_TOUCHED=FALSE; 911s > plot(ls, add = TRUE, col = "red") 911s > plot(st_rasterize(ls, grd, options = "ALL_TOUCHED=TRUE"), axes = TRUE, reset = FALSE) 911s > plot(ls, add = TRUE, col = "red") 911s > # add lines to existing 0 values, summing values in case of multiple lines: 911s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = 0)) 911s stars object with 2 dimensions and 1 attribute 911s attribute(s): 911s Min. 1st Qu. Median Mean 3rd Qu. Max. 911s values 0 0 0 0 0 0 911s dimension(s): 911s from to offset delta x/y 911s x 1 10 0 0.1 [x] 911s y 1 10 1 -0.1 [y] 911s > r = st_rasterize(ls, grd, options = c("MERGE_ALG=ADD", "ALL_TOUCHED=TRUE")) 911s > plot(r, axes = TRUE, reset = FALSE) 911s > plot(ls, add = TRUE, col = "red") 911s > 911s BEGIN TEST rectilinear.R 911s 911s R version 4.3.2 (2023-10-31) -- "Eye Holes" 911s Copyright (C) 2023 The R Foundation for Statistical Computing 911s Platform: x86_64-pc-linux-gnu (64-bit) 911s 911s R is free software and comes with ABSOLUTELY NO WARRANTY. 911s You are welcome to redistribute it under certain conditions. 911s Type 'license()' or 'licence()' for distribution details. 911s 911s R is a collaborative project with many contributors. 911s Type 'contributors()' for more information and 911s 'citation()' on how to cite R or R packages in publications. 911s 911s Type 'demo()' for some demos, 'help()' for on-line help, or 911s 'help.start()' for an HTML browser interface to help. 911s Type 'q()' to quit R. 911s 911s > suppressPackageStartupMessages(library(stars)) 912s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 912s > x = read_stars(tif) 912s > (xx = x[,c(1:347,349),c(1:350,352),]) # rectilinear: one-but-last row & col missing 912s stars object with 3 dimensions and 1 attribute 912s attribute(s): 912s Min. 1st Qu. Median Mean 3rd Qu. Max. 912s L7_ETMs.tif 1 54 69 68.9915 86 255 912s dimension(s): 912s from to refsys point 912s x 1 348 SIRGAS 2000 / UTM zone 25S FALSE 912s y 1 351 SIRGAS 2000 / UTM zone 25S FALSE 912s band 1 6 NA NA 912s values x/y 912s x [288790.5,288819),...,[298708.5,298737) [x] 912s y [9120747,9120718),...,[9110743,9110715) [y] 912s band NULL 912s > image(xx) # chooses useRaster itself 912s > # see also tidy.R for a ggplot example, leaving out the row. 912s > 912s > m = matrix(1:16, 4, 4) 912s > x = 1:4 912s > y = 2:5 912s > (st = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 912s stars object with 2 dimensions and 1 attribute 912s attribute(s): 912s Min. 1st Qu. Median Mean 3rd Qu. Max. 912s m 1 4.75 8.5 8.5 12.25 16 912s dimension(s): 912s from to offset delta point x/y 912s x 1 4 1 1 FALSE [x] 912s y 1 4 2 1 FALSE [y] 912s > st = st_set_dimensions(st, 1, values = c(1,2,3,4,6)) 912s > st = st_set_dimensions(st, 2, values = c(2,3,4,5,8)) 912s > try(st_set_dimensions(st, 2, values = c(2,3,4,5,8,20))) # one too many 912s Error in st_set_dimensions(st, 2, values = c(2, 3, 4, 5, 8, 20)) : 912s length of values ( 6 ) does not match length of dimension 2 ( 4 ) 912s > 912s > # $<-.stars: 912s > st$foo = st$m * 2 912s > st 912s stars object with 2 dimensions and 2 attributes 912s attribute(s): 912s Min. 1st Qu. Median Mean 3rd Qu. Max. 912s m 1 4.75 8.5 8.5 12.25 16 912s foo 2 9.50 17.0 17.0 24.50 32 912s dimension(s): 912s from to point values x/y 912s x 1 4 FALSE [1,2),...,[4,6) [x] 912s y 1 4 FALSE [2,3),...,[5,8) [y] 912s > 912s > # st_as_sf: 912s > 912s > if (utils::packageVersion("sf") > "0.7.2") { 912s + plot(st_as_sf(st, as_points = FALSE), axes = TRUE) 912s + } 912s > 912s > image(st, text_values = TRUE, axes = TRUE) 912s > 912s BEGIN TEST redimension.R 912s 912s R version 4.3.2 (2023-10-31) -- "Eye Holes" 912s Copyright (C) 2023 The R Foundation for Statistical Computing 912s Platform: x86_64-pc-linux-gnu (64-bit) 912s 912s R is free software and comes with ABSOLUTELY NO WARRANTY. 912s You are welcome to redistribute it under certain conditions. 912s Type 'license()' or 'licence()' for distribution details. 912s 912s R is a collaborative project with many contributors. 912s Type 'contributors()' for more information and 912s 'citation()' on how to cite R or R packages in publications. 912s 912s Type 'demo()' for some demos, 'help()' for on-line help, or 912s 'help.start()' for an HTML browser interface to help. 912s Type 'q()' to quit R. 912s 912s > suppressPackageStartupMessages(library(stars)) 913s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 913s > r = read_stars(list(a = c(tif,tif), b = c(tif, tif)), proxy = TRUE) 913s > (xx = st_redimension(r, along = list(foo = 1:4))) 913s stars_proxy object with 1 attribute in 4 file(s): 913s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 913s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 913s [4] "[...]/L7_ETMs.tif" 913s 913s dimension(s): 913s from to offset delta refsys point x/y 913s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 913s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 913s band 1 6 NA NA NA NA 913s foo 1 4 1 1 NA NA 913s > (rr = c(xx, xx)) 913s stars_proxy object with 2 attributes in 8 file(s): 913s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 913s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 913s [4] "[...]/L7_ETMs.tif" 913s 913s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 913s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 913s [4] "[...]/L7_ETMs.tif" 913s 913s dimension(s): 913s from to offset delta refsys point x/y 913s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 913s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 913s band 1 6 NA NA NA NA 913s foo 1 4 1 1 NA NA 913s > # st_as_stars(rr) 913s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 913s stars_proxy object with 1 attribute in 8 file(s): 913s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif.a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 913s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 913s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 913s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 913s 913s dimension(s): 913s from to offset delta refsys point x/y 913s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 913s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 913s band 1 6 NA NA NA NA 913s foo 1 4 1 1 NA NA 913s bar 1 2 2001-01-01 365 days Date NA 913s > (rr = c(a = xx, b = xx)) 913s stars_proxy object with 2 attributes in 8 file(s): 913s $a 913s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 913s [4] "[...]/L7_ETMs.tif" 913s 913s $b 913s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 913s [4] "[...]/L7_ETMs.tif" 913s 913s dimension(s): 913s from to offset delta refsys point x/y 913s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 913s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 913s band 1 6 NA NA NA NA 913s foo 1 4 1 1 NA NA 913s > # st_as_stars(rr) 913s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 913s stars_proxy object with 1 attribute in 8 file(s): 913s $a.b 913s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 913s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 913s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 913s 913s dimension(s): 913s from to offset delta refsys point x/y 913s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 913s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 913s band 1 6 NA NA NA NA 913s foo 1 4 1 1 NA NA 913s bar 1 2 2001-01-01 365 days Date NA 913s > 913s BEGIN TEST sf.R 913s 913s R version 4.3.2 (2023-10-31) -- "Eye Holes" 913s Copyright (C) 2023 The R Foundation for Statistical Computing 913s Platform: x86_64-pc-linux-gnu (64-bit) 913s 913s R is free software and comes with ABSOLUTELY NO WARRANTY. 913s You are welcome to redistribute it under certain conditions. 913s Type 'license()' or 'licence()' for distribution details. 913s 913s R is a collaborative project with many contributors. 913s Type 'contributors()' for more information and 913s 'citation()' on how to cite R or R packages in publications. 913s 913s Type 'demo()' for some demos, 'help()' for on-line help, or 913s 'help.start()' for an HTML browser interface to help. 913s Type 'q()' to quit R. 913s 913s > suppressPackageStartupMessages(library(stars)) 914s > library(sf) 914s > #jp2 = system.file("jp2/B01.jp2", package = "stars") 914s > #(x = read_stars(jp2, options = c("OVERVIEW_LEVEL=3"))) 914s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 914s > #(x = read_stars(tif, options = c("OVERVIEW_LEVEL=3"))) # FIXME: breaks on windows 914s > (x = read_stars(tif)[,1:20,1:20]) 914s stars object with 3 dimensions and 1 attribute 914s attribute(s): 914s Min. 1st Qu. Median Mean 3rd Qu. Max. 914s L7_ETMs.tif 17 44 58 58.19667 70 130 914s dimension(s): 914s from to offset delta refsys point x/y 914s x 1 20 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 914s y 1 20 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 914s band 1 6 NA NA NA NA 914s > # names(x) = "L7_ETM" 914s > 914s > # library(abind) 914s > # x = adrop(x) 914s > image(x) 914s > (sfc = st_as_sfc(x, as_points = FALSE)) 914s Geometry set for 400 features 914s Geometry type: POLYGON 914s Dimension: XY 914s Bounding box: xmin: 288776.3 ymin: 9120191 xmax: 289346.3 ymax: 9120761 914s Projected CRS: SIRGAS 2000 / UTM zone 25S 914s First 5 geometries: 914s POLYGON ((288776.3 9120761, 288804.8 9120761, 2... 914s POLYGON ((288804.8 9120761, 288833.3 9120761, 2... 914s POLYGON ((288833.3 9120761, 288861.8 9120761, 2... 914s POLYGON ((288861.8 9120761, 288890.3 9120761, 2... 914s POLYGON ((288890.3 9120761, 288918.8 9120761, 2... 914s > plot(sfc, add =TRUE) 914s > (sfc = st_as_sfc(x, as_points = TRUE)) 914s Geometry set for 400 features 914s Geometry type: POINT 914s Dimension: XY 914s Bounding box: xmin: 288790.5 ymin: 9120205 xmax: 289332 ymax: 9120747 914s POINT (288790.5 9120747) 914s Projected CRS: SIRGAS 2000 / UTM zone 25S 914s First 5 geometries: 914s POINT (288819 9120747) 914s POINT (288847.5 9120747) 914s POINT (288876 9120747) 914s POINT (288904.5 9120747) 914s > plot(sfc, add = TRUE) 914s > 914s > sf = st_as_sf(x, as_points = FALSE) 914s > plot(sf, border = NA) 914s > sf = st_as_sf(x[,,,1], as_points = FALSE, merge = TRUE) 914s > plot(sf, border = NA) 914s > 914s > sfc1 <- st_as_sfc(x, as_points = TRUE, use_cpp = TRUE, na.rm = FALSE) 914s > sfc2 <- st_as_sfc(x, as_points = TRUE, use_cpp = FALSE) 914s > identical(sfc1, sfc2) 914s [1] TRUE 914s > 914s > sfc1 <- st_as_sfc(x, as_points = FALSE, use_cpp = TRUE, na.rm = FALSE) 914s > sfc2 <- st_as_sfc(x, as_points = FALSE, use_cpp = FALSE) 914s > identical(sfc1, sfc2) 914s [1] TRUE 914s > 914s > # sf -> stars -> sf 914s > x = st_sfc(st_point(0:1), st_point(1:2), st_point(2:3)) 914s > m = matrix(1:9,3) 914s > colnames(m) = c("a", "b", "c") 914s > foo = st_sf(m, geom = x) 914s > x = st_as_stars(foo) 914s > c(x) 914s stars object with 1 dimensions and 3 attributes 914s attribute(s): 914s Min. 1st Qu. Median Mean 3rd Qu. Max. 914s a 1 1.5 2 2 2.5 3 914s b 4 4.5 5 5 5.5 6 914s c 7 7.5 8 8 8.5 9 914s dimension(s): 914s from to point values 914s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 914s > st_redimension(x) 914s stars object with 2 dimensions and 1 attribute 914s attribute(s): 914s Min. 1st Qu. Median Mean 3rd Qu. Max. 914s a.b.c 1 3 5 5 7 9 914s dimension(s): 914s from to point values 914s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 914s new_dim 1 3 NA a, b, c 914s > c(x, x) 914s stars object with 1 dimensions and 6 attributes 914s attribute(s): 914s Min. 1st Qu. Median Mean 3rd Qu. Max. 914s a 1 1.5 2 2 2.5 3 914s b 4 4.5 5 5 5.5 6 914s c 7 7.5 8 8 8.5 9 914s a.1 1 1.5 2 2 2.5 3 914s b.1 4 4.5 5 5 5.5 6 914s c.1 7 7.5 8 8 8.5 9 914s dimension(s): 914s from to point values 914s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 914s > (y = st_redimension(x, along = list(time = as.Date("2017-11-27") + 0:2))) 914s stars object with 2 dimensions and 1 attribute 914s attribute(s): 914s Min. 1st Qu. Median Mean 3rd Qu. Max. 914s a.b.c 1 3 5 5 7 9 914s dimension(s): 914s from to offset delta refsys point values 914s geom 1 3 NA NA NA TRUE POINT (0 1),...,POINT (2 3) 914s time 1 3 2017-11-27 1 days Date NA NULL 914s > st_as_sf(y) 914s Simple feature collection with 3 features and 3 fields 914s Geometry type: POINT 914s Dimension: XY 914s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 914s CRS: NA 914s 2017-11-27 2017-11-28 2017-11-29 geom 914s 1 1 4 7 POINT (0 1) 914s 2 2 5 8 POINT (1 2) 914s 3 3 6 9 POINT (2 3) 914s > st_as_sf(st_as_stars(foo)) 914s Simple feature collection with 3 features and 3 fields 914s Geometry type: POINT 914s Dimension: XY 914s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 914s CRS: NA 914s a b c geom 914s 1 1 4 7 POINT (0 1) 914s 2 2 5 8 POINT (1 2) 914s 3 3 6 9 POINT (2 3) 914s > 914s > c(x,x,along=1) # NEEDS FIXING! 914s stars object with 1 dimensions and 3 attributes 914s attribute(s): 914s Min. 1st Qu. Median Mean 3rd Qu. Max. 914s a 1 1.25 2 2 2.75 3 914s b 4 4.25 5 5 5.75 6 914s c 7 7.25 8 8 8.75 9 914s dimension(s): 914s from to point values 914s geom 1 6 TRUE POINT (0 1),...,POINT (2 3) 914s > # st_as_stars.sfc 914s > st_as_stars(st_geometry(st_as_sf(y)), nx = 10, ny = 10, as_points = FALSE) 914s stars object with 2 dimensions and 1 attribute 914s attribute(s): 914s Min. 1st Qu. Median Mean 3rd Qu. Max. 914s values 0 0 0 0.06 0 1 914s dimension(s): 914s from to offset delta x/y 914s x 1 10 0 0.2 [x] 914s y 1 10 3 -0.2 [y] 914s > 915s BEGIN TEST sp.R 915s 915s R version 4.3.2 (2023-10-31) -- "Eye Holes" 915s Copyright (C) 2023 The R Foundation for Statistical Computing 915s Platform: x86_64-pc-linux-gnu (64-bit) 915s 915s R is free software and comes with ABSOLUTELY NO WARRANTY. 915s You are welcome to redistribute it under certain conditions. 915s Type 'license()' or 'licence()' for distribution details. 915s 915s R is a collaborative project with many contributors. 915s Type 'contributors()' for more information and 915s 'citation()' on how to cite R or R packages in publications. 915s 915s Type 'demo()' for some demos, 'help()' for on-line help, or 915s 'help.start()' for an HTML browser interface to help. 915s Type 'q()' to quit R. 915s 915s > options(rgdal_show_exportToProj4_warnings = "none") 915s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 915s + demo(meuse) 915s + # remove +init=xxx 915s + meuse@proj4string = CRS( 915s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 915s + ) 915s + meuse.grid@proj4string = CRS( 915s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 915s + ) 915s + 915s + suppressPackageStartupMessages(library(stars)) 915s + (m = st_as_stars(meuse)) 915s + (gr = st_as_stars(meuse.grid)) 915s + 915s + m2 = as(m, "Spatial") 915s + summary(m2) 915s + gr2 = as(gr, "Spatial") 915s + summary(gr2) 915s + 915s + all.equal(meuse, m2, check.attributes = FALSE) 915s + fullgrid(meuse.grid) = TRUE 915s + all.equal(meuse.grid, gr2, check.attributes = FALSE) 915s + 915s + #all.equal(meuse, m2) 915s + #all.equal(meuse.grid, gr2) 915s + } 915s 915s 915s demo(meuse) 915s ---- ~~~~~ 915s 915s > require(sp) 915s 915s > crs = CRS("EPSG:28992") 916s 916s > data("meuse") 916s 916s > coordinates(meuse) <- ~x+y 916s 916s > proj4string(meuse) <- crs 916s 916s > data("meuse.grid") 916s 916s > coordinates(meuse.grid) <- ~x+y 916s 916s > gridded(meuse.grid) <- TRUE 916s 916s > proj4string(meuse.grid) <- crs 916s 916s > data("meuse.riv") 916s 916s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 916s 916s > proj4string(meuse.riv) <- crs 916s 916s > data("meuse.area") 916s 916s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 916s 916s > proj4string(meuse.area) <- crs 916s [1] TRUE 916s > 916s BEGIN TEST spacetime.R 916s 916s R version 4.3.2 (2023-10-31) -- "Eye Holes" 916s Copyright (C) 2023 The R Foundation for Statistical Computing 916s Platform: x86_64-pc-linux-gnu (64-bit) 916s 916s R is free software and comes with ABSOLUTELY NO WARRANTY. 916s You are welcome to redistribute it under certain conditions. 916s Type 'license()' or 'licence()' for distribution details. 916s 916s R is a collaborative project with many contributors. 916s Type 'contributors()' for more information and 916s 'citation()' on how to cite R or R packages in publications. 916s 916s Type 'demo()' for some demos, 'help()' for on-line help, or 916s 'help.start()' for an HTML browser interface to help. 916s Type 'q()' to quit R. 916s 916s > suppressPackageStartupMessages(library(stars)) 917s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 917s + set.seed(1331) 917s + Sys.setenv(TZ="UTC") 917s + example(STFDF) 917s + 917s + x = st_as_stars(stfdf) 917s + xx = as(x, "STFDF") 917s + 917s + # as.xts.stars: 917s + library(xts) 917s + xts = as.xts(x) 917s + st_as_stars(xts) 917s + st_as_stars(xts, dimensions = st_dimensions(x)) 917s + 917s + library(sp) 917s + pts = SpatialPoints(rbind(c(0,0), c(0,1), c(1,0), c(1,1))) 917s + gridded(pts) = TRUE 917s + 917s + tm = xts(1:10, as.Date("2010-01-01")+0:9) 917s + stfdf = STFDF(pts, tm, data.frame(foo = seq_len(length(pts) * length(tm)))) 917s + x = st_as_stars(stfdf) 917s + xx = as(x, "STFDF") 917s + 917s + x = st_as_stars(as(stfdf, "STSDF")) 917s + } 917s 917s STFDF> sp = cbind(x = c(0,0,1), y = c(0,1,1)) 917s 917s STFDF> row.names(sp) = paste("point", 1:nrow(sp), sep="") 917s 917s STFDF> library(sp) 917s 917s STFDF> sp = SpatialPoints(sp) 917s 917s STFDF> time = as.POSIXct("2010-08-05")+3600*(10:13) 917s 917s STFDF> m = c(10,20,30) # means for each of the 3 point locations 917s 917s STFDF> mydata = rnorm(length(sp)*length(time),mean=rep(m, 4)) 917s 917s STFDF> IDs = paste("ID",1:length(mydata)) 917s 917s STFDF> mydata = data.frame(values = signif(mydata,3), ID=IDs) 917s 917s STFDF> stfdf = STFDF(sp, time, mydata) 917s 917s STFDF> stfdf 917s An object of class "STFDF" 917s Slot "data": 917s values ID 917s 1 9.38 ID 1 917s 2 21.10 ID 2 917s 3 29.80 ID 3 917s 4 11.50 ID 4 917s 5 19.80 ID 5 917s 6 31.20 ID 6 917s 7 10.40 ID 7 917s 8 20.50 ID 8 917s 9 29.80 ID 9 917s 10 10.30 ID 10 917s 11 21.40 ID 11 917s 12 29.40 ID 12 917s 917s Slot "sp": 917s SpatialPoints: 917s x y 917s point1 0 0 917s point2 0 1 917s point3 1 1 917s Coordinate Reference System (CRS) arguments: NA 917s 917s Slot "time": 917s timeIndex 917s 2010-08-05 10:00:00 1 917s 2010-08-05 11:00:00 2 917s 2010-08-05 12:00:00 3 917s 2010-08-05 13:00:00 4 917s 917s Slot "endTime": 917s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 917s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 917s 917s 917s STFDF> stfdf[1:2,] 917s An object of class "STFDF" 917s Slot "data": 917s values ID 917s 1 9.38 ID 1 917s 2 21.10 ID 2 917s 3 11.50 ID 4 917s 4 19.80 ID 5 917s 5 10.40 ID 7 917s 6 20.50 ID 8 917s 7 10.30 ID 10 917s 8 21.40 ID 11 917s 917s Slot "sp": 917s SpatialPoints: 917s x y 917s point1 0 0 917s point2 0 1 917s Coordinate Reference System (CRS) arguments: NA 917s 917s Slot "time": 917s timeIndex 917s 2010-08-05 10:00:00 1 917s 2010-08-05 11:00:00 2 917s 2010-08-05 12:00:00 3 917s 2010-08-05 13:00:00 4 917s 917s Slot "endTime": 917s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 917s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 917s 917s 917s STFDF> stfdf[,1:2] 917s An object of class "STFDF" 917s Slot "data": 917s values ID 917s 1 9.38 ID 1 917s 2 21.10 ID 2 917s 3 29.80 ID 3 917s 4 11.50 ID 4 917s 5 19.80 ID 5 917s 6 31.20 ID 6 917s 917s Slot "sp": 917s SpatialPoints: 917s x y 917s point1 0 0 917s point2 0 1 917s point3 1 1 917s Coordinate Reference System (CRS) arguments: NA 917s 917s Slot "time": 917s timeIndex 917s 2010-08-05 10:00:00 1 917s 2010-08-05 11:00:00 2 917s 917s Slot "endTime": 917s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 917s 917s 917s STFDF> stfdf[,,2] 917s An object of class "STFDF" 917s Slot "data": 917s ID 917s 1 ID 1 917s 2 ID 2 917s 3 ID 3 917s 4 ID 4 917s 5 ID 5 917s 6 ID 6 917s 7 ID 7 917s 8 ID 8 917s 9 ID 9 917s 10 ID 10 917s 11 ID 11 917s 12 ID 12 917s 917s Slot "sp": 917s SpatialPoints: 917s x y 917s point1 0 0 917s point2 0 1 917s point3 1 1 917s Coordinate Reference System (CRS) arguments: NA 917s 917s Slot "time": 917s timeIndex 917s 2010-08-05 10:00:00 1 917s 2010-08-05 11:00:00 2 917s 2010-08-05 12:00:00 3 917s 2010-08-05 13:00:00 4 917s 917s Slot "endTime": 917s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 917s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 917s 917s 917s STFDF> stfdf[,,"values"] 917s An object of class "STFDF" 917s Slot "data": 917s values 917s 1 9.38 917s 2 21.10 917s 3 29.80 917s 4 11.50 917s 5 19.80 917s 6 31.20 917s 7 10.40 917s 8 20.50 917s 9 29.80 917s 10 10.30 917s 11 21.40 917s 12 29.40 917s 917s Slot "sp": 917s SpatialPoints: 917s x y 917s point1 0 0 917s point2 0 1 917s point3 1 1 917s Coordinate Reference System (CRS) arguments: NA 917s 917s Slot "time": 917s timeIndex 917s 2010-08-05 10:00:00 1 917s 2010-08-05 11:00:00 2 917s 2010-08-05 12:00:00 3 917s 2010-08-05 13:00:00 4 917s 917s Slot "endTime": 917s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 917s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 917s 917s 917s STFDF> stfdf[1,] 917s values ID timeIndex 917s 2010-08-05 10:00:00 9.38 ID 1 1 917s 2010-08-05 11:00:00 11.50 ID 4 2 917s 2010-08-05 12:00:00 10.40 ID 7 3 917s 2010-08-05 13:00:00 10.30 ID 10 4 917s 917s STFDF> stfdf[,2] 917s coordinates values ID 917s 1 (0, 0) 11.5 ID 4 917s 2 (0, 1) 19.8 ID 5 917s 3 (1, 1) 31.2 ID 6 917s 917s STFDF> as(stfdf[,,1], "xts") 917s point1 point2 point3 917s 2010-08-05 10:00:00 9.38 21.1 29.8 917s 2010-08-05 11:00:00 11.50 19.8 31.2 917s 2010-08-05 12:00:00 10.40 20.5 29.8 917s 2010-08-05 13:00:00 10.30 21.4 29.4 917s 917s STFDF> as(stfdf[,,2], "xts") 917s point1 point2 point3 917s 2010-08-05 10:00:00 ID 1 ID 2 ID 3 917s 2010-08-05 11:00:00 ID 4 ID 5 ID 6 917s 2010-08-05 12:00:00 ID 7 ID 8 ID 9 917s 2010-08-05 13:00:00 ID 10 ID 11 ID 12 917s 917s STFDF> # examples for [[, [[<-, $ and $<- 917s STFDF> stfdf[[1]] 917s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 917s 917s STFDF> stfdf[["values"]] 917s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 917s 917s STFDF> stfdf[["newVal"]] <- rnorm(12) 917s 917s STFDF> stfdf$ID 917s [1] "ID 1" "ID 2" "ID 3" "ID 4" "ID 5" "ID 6" "ID 7" "ID 8" "ID 9" 917s [10] "ID 10" "ID 11" "ID 12" 917s 917s STFDF> stfdf$ID = paste("OldIDs", 1:12, sep="") 917s 917s STFDF> stfdf$NewID = paste("NewIDs", 12:1, sep="") 917s 917s STFDF> stfdf 917s An object of class "STFDF" 917s Slot "data": 917s values ID newVal NewID 917s 1 9.38 OldIDs1 -0.3125824 NewIDs12 917s 2 21.10 OldIDs2 -1.0536246 NewIDs11 917s 3 29.80 OldIDs3 -0.7188880 NewIDs10 917s 4 11.50 OldIDs4 -1.0525404 NewIDs9 917s 5 19.80 OldIDs5 -0.8441413 NewIDs8 917s 6 31.20 OldIDs6 1.1420848 NewIDs7 917s 7 10.40 OldIDs7 1.9479070 NewIDs6 917s 8 20.50 OldIDs8 -0.4512836 NewIDs5 917s 9 29.80 OldIDs9 0.6695716 NewIDs4 917s 10 10.30 OldIDs10 0.1269003 NewIDs3 917s 11 21.40 OldIDs11 -0.7273297 NewIDs2 917s 12 29.40 OldIDs12 -0.8151803 NewIDs1 917s 917s Slot "sp": 917s SpatialPoints: 917s x y 917s point1 0 0 917s point2 0 1 917s point3 1 1 917s Coordinate Reference System (CRS) arguments: NA 917s 917s Slot "time": 917s timeIndex 917s 2010-08-05 10:00:00 1 917s 2010-08-05 11:00:00 2 917s 2010-08-05 12:00:00 3 917s 2010-08-05 13:00:00 4 917s 917s Slot "endTime": 917s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 917s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 917s 917s 917s STFDF> x = stfdf[stfdf[1:2,],] 917s 917s STFDF> all.equal(x, stfdf[1:2,]) 917s [1] TRUE 917s 917s STFDF> all.equal(stfdf, stfdf[stfdf,]) # converts character to factor... 917s [1] TRUE 917s Loading required package: zoo 917s 917s Attaching package: 'zoo' 917s 917s The following objects are masked from 'package:base': 917s 917s as.Date, as.Date.numeric 917s 917s only the first attribute will used; maybe use merge() first? 918s > 918s BEGIN TEST spatstat.R 918s 918s R version 4.3.2 (2023-10-31) -- "Eye Holes" 918s Copyright (C) 2023 The R Foundation for Statistical Computing 918s Platform: x86_64-pc-linux-gnu (64-bit) 918s 918s R is free software and comes with ABSOLUTELY NO WARRANTY. 918s You are welcome to redistribute it under certain conditions. 918s Type 'license()' or 'licence()' for distribution details. 918s 918s R is a collaborative project with many contributors. 918s Type 'contributors()' for more information and 918s 'citation()' on how to cite R or R packages in publications. 918s 918s Type 'demo()' for some demos, 'help()' for on-line help, or 918s 'help.start()' for an HTML browser interface to help. 918s Type 'q()' to quit R. 918s 918s > suppressPackageStartupMessages(library(sf)) 918s > 918s > library(stars) 918s Loading required package: abind 918s > if (suppressPackageStartupMessages(require(spatstat.geom, quietly = TRUE))) { 918s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 918s + s = adrop(read_stars(tif)[,,,1]) > 70 918s + plot(s) 918s + m = as.owin(s) 918s + plot(m) 918s + print(table(m$m)) 918s + } 920s 920s FALSE TRUE 920s 39494 83354 920s > 920s BEGIN TEST stars.R 920s 920s R version 4.3.2 (2023-10-31) -- "Eye Holes" 920s Copyright (C) 2023 The R Foundation for Statistical Computing 920s Platform: x86_64-pc-linux-gnu (64-bit) 920s 920s R is free software and comes with ABSOLUTELY NO WARRANTY. 920s You are welcome to redistribute it under certain conditions. 920s Type 'license()' or 'licence()' for distribution details. 920s 920s R is a collaborative project with many contributors. 920s Type 'contributors()' for more information and 920s 'citation()' on how to cite R or R packages in publications. 920s 920s Type 'demo()' for some demos, 'help()' for on-line help, or 920s 'help.start()' for an HTML browser interface to help. 920s Type 'q()' to quit R. 920s 920s > Sys.setenv(TZ="UTC") 920s > suppressPackageStartupMessages(library(stars)) 921s > set.seed(13521) # runif 921s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 921s > (x_ = read_stars(c(tif,tif))) # FIXME: not what you'd expect 921s stars object with 3 dimensions and 2 attributes 921s attribute(s): 921s Min. 1st Qu. Median Mean 3rd Qu. Max. 921s L7_ETMs.tif 1 54 69 68.91242 86 255 921s L7_ETMs.tif.1 1 54 69 68.91242 86 255 921s dimension(s): 921s from to offset delta refsys point x/y 921s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 921s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 921s band 1 6 NA NA NA NA 921s > (x = read_stars(tif)) 921s stars object with 3 dimensions and 1 attribute 921s attribute(s): 921s Min. 1st Qu. Median Mean 3rd Qu. Max. 921s L7_ETMs.tif 1 54 69 68.91242 86 255 921s dimension(s): 921s from to offset delta refsys point x/y 921s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 921s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 921s band 1 6 NA NA NA NA 921s > # image(x) 921s > gdal_crs(tif) 921s Coordinate Reference System: 921s User input: PROJCS["SIRGAS 2000 / UTM zone 25S",GEOGCS["SIRGAS 2000",DATUM["Sistema_de_Referencia_Geocentrico_para_las_AmericaS_2000",SPHEROID["GRS 1980",6378137,298.257222101,AUTHORITY["EPSG","7019"]],AUTHORITY["EPSG","6674"]],PRIMEM["Greenwich",0,AUTHORITY["EPSG","8901"]],UNIT["degree",0.0174532925199433,AUTHORITY["EPSG","9122"]],AUTHORITY["EPSG","4674"]],PROJECTION["Transverse_Mercator"],PARAMETER["latitude_of_origin",0],PARAMETER["central_meridian",-33],PARAMETER["scale_factor",0.9996],PARAMETER["false_easting",500000],PARAMETER["false_northing",10000000],UNIT["metre",1,AUTHORITY["EPSG","9001"]],AXIS["Easting",EAST],AXIS["Northing",NORTH],AUTHORITY["EPSG","31985"]] 921s wkt: 921s PROJCRS["SIRGAS 2000 / UTM zone 25S", 921s BASEGEOGCRS["SIRGAS 2000", 921s DATUM["Sistema de Referencia Geocentrico para las AmericaS 2000", 921s ELLIPSOID["GRS 1980",6378137,298.257222101, 921s LENGTHUNIT["metre",1]]], 921s PRIMEM["Greenwich",0, 921s ANGLEUNIT["degree",0.0174532925199433]], 921s ID["EPSG",4674]], 921s CONVERSION["UTM zone 25S", 921s METHOD["Transverse Mercator", 921s ID["EPSG",9807]], 921s PARAMETER["Latitude of natural origin",0, 921s ANGLEUNIT["degree",0.0174532925199433], 921s ID["EPSG",8801]], 921s PARAMETER["Longitude of natural origin",-33, 921s ANGLEUNIT["degree",0.0174532925199433], 921s ID["EPSG",8802]], 921s PARAMETER["Scale factor at natural origin",0.9996, 921s SCALEUNIT["unity",1], 921s ID["EPSG",8805]], 921s PARAMETER["False easting",500000, 921s LENGTHUNIT["metre",1], 921s ID["EPSG",8806]], 921s PARAMETER["False northing",10000000, 921s LENGTHUNIT["metre",1], 921s ID["EPSG",8807]]], 921s CS[Cartesian,2], 921s AXIS["easting",east, 921s ORDER[1], 921s LENGTHUNIT["metre",1]], 921s AXIS["northing",north, 921s ORDER[2], 921s LENGTHUNIT["metre",1]], 921s ID["EPSG",31985]] 921s > plot(x) 921s > plot(x, join_zlim = FALSE) 922s > x %>% st_set_dimensions(names = c('a', 'b', 'c')) 922s stars object with 3 dimensions and 1 attribute 922s attribute(s): 922s Min. 1st Qu. Median Mean 3rd Qu. Max. 922s L7_ETMs.tif 1 54 69 68.91242 86 255 922s dimension(s): 922s from to offset delta refsys point x/y 922s a 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 922s b 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 922s c 1 6 NA NA NA NA 922s > st_get_dimension_values(x, 3) 922s [1] 1 2 3 4 5 6 922s > 922s > (x1 = st_set_dimensions(x, "band", values = c(1,2,3,4,5,7), names = "band_number", point = TRUE)) 922s stars object with 3 dimensions and 1 attribute 922s attribute(s): 922s Min. 1st Qu. Median Mean 3rd Qu. Max. 922s L7_ETMs.tif 1 54 69 68.91242 86 255 922s dimension(s): 922s from to offset delta refsys point values x/y 922s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 922s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 922s band_number 1 6 NA NA NA TRUE 1,...,7 922s > rbind(c(0.45,0.515), c(0.525,0.605), c(0.63,0.69), c(0.775,0.90), c(1.55,1.75), c(2.08,2.35)) %>% 922s + units::set_units(um) -> bw # units::set_units(µm) -> bw 922s > # set bandwidth midpoint: 922s > (x2 = st_set_dimensions(x, "band", values = 0.5 * (bw[,1]+bw[,2]), 922s + names = "bandwidth_midpoint", point = TRUE)) 922s stars object with 3 dimensions and 1 attribute 922s attribute(s): 922s Min. 1st Qu. Median Mean 3rd Qu. Max. 922s L7_ETMs.tif 1 54 69 68.91242 86 255 922s dimension(s): 922s from to offset delta refsys point 922s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 922s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 922s bandwidth_midpoint 1 6 NA NA udunits TRUE 922s values x/y 922s x NULL [x] 922s y NULL [y] 922s bandwidth_midpoint 0.4825 [um],...,2.215 [um] 922s > # set bandwidth intervals: 922s > (x3 = st_set_dimensions(x, "band", values = make_intervals(bw), names = "bandwidth")) 922s stars object with 3 dimensions and 1 attribute 922s attribute(s): 922s Min. 1st Qu. Median Mean 3rd Qu. Max. 922s L7_ETMs.tif 1 54 69 68.91242 86 255 922s dimension(s): 922s from to offset delta refsys point 922s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 922s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 922s bandwidth 1 6 NA NA udunits NA 922s values x/y 922s x NULL [x] 922s y NULL [y] 922s bandwidth [0.45,0.515) [um],...,[2.08,2.35) [um] 922s > 922s > x + x 922s stars object with 3 dimensions and 1 attribute 922s attribute(s): 922s Min. 1st Qu. Median Mean 3rd Qu. Max. 922s L7_ETMs.tif 2 108 138 137.8248 172 510 922s dimension(s): 922s from to offset delta refsys point x/y 922s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 922s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 922s band 1 6 NA NA NA NA 922s > x * x 922s stars object with 3 dimensions and 1 attribute 922s attribute(s): 922s Min. 1st Qu. Median Mean 3rd Qu. Max. 922s L7_ETMs.tif 1 2916 4761 5512.41 7396 65025 922s dimension(s): 922s from to offset delta refsys point x/y 922s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 922s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 922s band 1 6 NA NA NA NA 922s > x[,,,1:3] 922s stars object with 3 dimensions and 1 attribute 922s attribute(s): 922s Min. 1st Qu. Median Mean 3rd Qu. Max. 922s L7_ETMs.tif 21 58 70 70.36041 83 255 922s dimension(s): 922s from to offset delta refsys point x/y 922s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 922s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 922s band 1 3 NA NA NA NA 922s > x[,1:100,100:200,] 922s stars object with 3 dimensions and 1 attribute 922s attribute(s): 922s Min. 1st Qu. Median Mean 3rd Qu. Max. 922s L7_ETMs.tif 13 54 65 67.21531 77 252 922s dimension(s): 922s from to offset delta refsys point x/y 922s x 1 100 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 922s y 100 200 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 922s band 1 6 NA NA NA NA 922s > sqrt(x) 922s stars object with 3 dimensions and 1 attribute 922s attribute(s): 922s Min. 1st Qu. Median Mean 3rd Qu. Max. 922s L7_ETMs.tif 1 7.348469 8.306624 8.094006 9.273618 15.96872 922s dimension(s): 922s from to offset delta refsys point x/y 922s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 922s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 922s band 1 6 NA NA NA NA 922s > st_apply(x, 3, min) 922s stars object with 1 dimensions and 1 attribute 922s attribute(s): 922s Min. 1st Qu. Median Mean 3rd Qu. Max. 922s min 1 3 15 18.5 29.25 47 922s dimension(s): 922s from to 922s band 1 6 922s > st_apply(x, 1:2, max) 922s stars object with 2 dimensions and 1 attribute 922s attribute(s): 922s Min. 1st Qu. Median Mean 3rd Qu. Max. 922s max 55 85 96 99.36018 113 255 922s dimension(s): 923s from to offset delta refsys point x/y 923s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 923s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 923s > st_apply(x, 1:2, range) 923s stars object with 3 dimensions and 1 attribute 923s attribute(s): 923s Min. 1st Qu. Median Mean 3rd Qu. Max. 923s L7_ETMs.tif 1 50 71 72.43565 96 255 923s dimension(s): 923s from to offset delta refsys point x/y 923s range 1 2 NA NA NA NA 923s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 923s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 923s > 923s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 923s > x = read_stars(geomatrix) 923s > y = st_transform(x, st_crs(4326)) 923s > st_coordinates(x)[1:10,] 923s x y 923s 1 1841000 1144000 923s 2 1841002 1143995 923s 3 1841003 1143990 923s 4 1841004 1143985 923s 5 1841006 1143980 923s 6 1841008 1143975 923s 7 1841009 1143970 923s 8 1841010 1143965 923s 9 1841012 1143960 923s 10 1841014 1143955 923s > 923s > nc = system.file("nc/tos_O1_2001-2002.nc", package = "stars") 923s > if (nc != "" && require(PCICt, quietly = TRUE)) { 923s + print(x <- read_stars(nc)) 923s + print(st_bbox(x)) 923s + s = st_as_stars(st_bbox(x)) # inside = NA 923s + print(st_bbox(s)) 923s + s = st_as_stars(st_bbox(x), inside = TRUE) 923s + print(st_bbox(s)) 923s + s = st_as_stars(st_bbox(x), inside = FALSE) 923s + print(st_bbox(s)) 923s + (s = st_as_stars(st_bbox(x), dy = 1)) 923s + print(st_bbox(s)) 923s + print(identical(st_as_stars(st_bbox(x), dx = 1), st_as_stars(st_bbox(x), dy = 1))) 923s + s = st_as_stars(st_bbox(x), dx = 10) 923s + print(st_bbox(s)) 923s + s = st_as_stars(st_bbox(x), dx = 20) 923s + print(st_bbox(s)) 923s + x1 = x 923s + st_crs(x1) = "OGC:CRS84" 923s + print(identical(st_as_stars(st_bbox(x1), dx = 1), st_as_stars(st_bbox(x1), dx = units::set_units(1, degree)))) 923s + 923s + df = as.data.frame(x) 923s + if (require(units, quietly = TRUE)) 923s + print(units::drop_units(x)) 923s + 923s + print(dimnames(x)) 923s + dimnames(x) <- letters[1:3] 923s + print(dimnames(x)) 923s + } # PCICt 923s > 923s > st_as_stars() 923s stars object with 2 dimensions and 1 attribute 923s attribute(s): 923s Min. 1st Qu. Median Mean 3rd Qu. Max. 923s values 0 0 0 0 0 0 923s dimension(s): 923s from to offset delta refsys x/y 923s x 1 360 -180 1 WGS 84 (CRS84) [x] 923s y 1 180 90 -1 WGS 84 (CRS84) [y] 923s > 923s > # multiple sub-datasets: 923s > nc_red = system.file("nc/reduced.nc", package = "stars") 923s > red = read_stars(nc_red) 923s sst, anom, err, ice, 923s > red 923s stars object with 4 dimensions and 4 attributes 923s attribute(s): 923s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 923s sst [degree_Celsius] -1.80 -0.03 13.655 12.9940841 24.8125 32.97 4448 923s anom [degree_Celsius] -10.16 -0.58 -0.080 -0.1855812 0.2100 2.99 4448 923s err [degree_Celsius] 0.11 0.16 0.270 0.2626872 0.3200 0.84 4448 923s ice [percent] 0.01 0.47 0.920 0.7178118 0.9600 1.00 13266 923s dimension(s): 923s from to offset delta refsys x/y 923s x 1 180 -1 2 NA [x] 923s y 1 90 90 -2 NA [y] 923s zlev 1 1 0 [m] NA NA 923s time 1 1 1981-12-31 UTC NA POSIXct 923s > plot(red) 923s > 923s > x = st_xy2sfc(read_stars(tif)[,1:10,1:10,], as_points = FALSE) 923s > st_bbox(x) 923s xmin ymin xmax ymax 923s 288776.3 9120475.8 289061.3 9120760.8 923s > x = read_stars(tif) 923s > merge(split(x, "band")) 924s stars object with 3 dimensions and 1 attribute 924s attribute(s): 924s Min. 1st Qu. Median Mean 3rd Qu. Max. 924s X1.X2.X3.X4.X5.X6 1 54 69 68.91242 86 255 924s dimension(s): 924s from to offset delta refsys point values 924s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 924s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 924s attributes 1 6 NA NA NA NA X1,...,X6 924s x/y 924s x [x] 924s y [y] 924s attributes 924s > 924s > read_stars(c(tif,tif)) # merges as attributes 924s stars object with 3 dimensions and 2 attributes 924s attribute(s): 924s Min. 1st Qu. Median Mean 3rd Qu. Max. 924s L7_ETMs.tif 1 54 69 68.91242 86 255 924s L7_ETMs.tif.1 1 54 69 68.91242 86 255 924s dimension(s): 924s from to offset delta refsys point x/y 924s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 924s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 924s band 1 6 NA NA NA NA 924s > read_stars(c(tif,tif), along = "sensor") 924s stars object with 4 dimensions and 1 attribute 924s attribute(s), summary of first 1e+05 cells: 924s Min. 1st Qu. Median Mean 3rd Qu. Max. 924s L7_ETMs.tif 47 65 76 77.3419 87 255 924s dimension(s): 924s from to offset delta refsys point x/y 924s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 924s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 924s band 1 6 NA NA NA NA 924s sensor 1 2 NA NA NA NA 924s > read_stars(c(tif,tif), along = 4) 924s stars object with 4 dimensions and 1 attribute 924s attribute(s), summary of first 1e+05 cells: 924s Min. 1st Qu. Median Mean 3rd Qu. Max. 924s L7_ETMs.tif 47 65 76 77.3419 87 255 924s dimension(s): 924s from to offset delta refsys point x/y 924s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 924s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 924s band 1 6 NA NA NA NA 924s new_dim 1 2 NA NA NA NA 924s > read_stars(c(tif,tif), along = "band") 924s stars object with 3 dimensions and 1 attribute 924s attribute(s), summary of first 1e+05 cells: 924s Min. 1st Qu. Median Mean 3rd Qu. Max. 924s L7_ETMs.tif 47 65 76 77.3419 87 255 924s dimension(s): 924s from to offset delta refsys point x/y 924s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 924s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 924s band 1 12 NA NA NA NA 924s > read_stars(c(tif,tif), along = 3) 925s stars object with 3 dimensions and 1 attribute 925s attribute(s), summary of first 1e+05 cells: 925s Min. 1st Qu. Median Mean 3rd Qu. Max. 925s L7_ETMs.tif 47 65 76 77.3419 87 255 925s dimension(s): 925s from to offset delta refsys point x/y 925s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 925s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 925s band 1 12 NA NA NA NA 925s > 925s > # cut: 925s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 925s > x = read_stars(tif) 925s > cut(x, c(0, 50, 100, 255)) 925s stars object with 3 dimensions and 1 attribute 925s attribute(s): 925s L7_ETMs.tif 925s (0,50] :156060 925s (50,100] :503764 925s (100,255]: 77264 925s dimension(s): 925s from to offset delta refsys point x/y 925s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 925s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 925s band 1 6 NA NA NA NA 925s > cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255)) 925s stars object with 2 dimensions and 1 attribute 925s attribute(s): 925s L7_ETMs.tif 925s (0,50] : 1 925s (50,100] :117134 925s (100,255]: 5713 925s dimension(s): 925s from to offset delta refsys point x/y 925s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 925s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 925s > plot(cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255))) 925s > 925s > st_bbox(st_dimensions(x)) 925s xmin ymin xmax ymax 925s 288776.3 9110728.8 298722.8 9120760.8 925s > x[x < 0] = NA 925s > x[is.na(x)] = 0 925s > 925s > # c: 925s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 925s > if (FALSE && f != "") { 925s + files = c("avhrr-only-v2.19810901.nc", 925s + "avhrr-only-v2.19810902.nc", 925s + "avhrr-only-v2.19810903.nc", 925s + "avhrr-only-v2.19810904.nc", 925s + "avhrr-only-v2.19810905.nc", 925s + "avhrr-only-v2.19810906.nc", 925s + "avhrr-only-v2.19810907.nc", 925s + "avhrr-only-v2.19810908.nc", 925s + "avhrr-only-v2.19810909.nc") 925s + l = list() 925s + for (f in files) { 925s + from = system.file(paste0("netcdf/", f), package = "starsdata") 925s + l[[f]] = read_stars(from, sub = c("sst", "anom")) 925s + } 925s + ret = do.call(c, l) 925s + print(ret) 925s + ret = adrop(c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 925s + print(ret) 925s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 925s + #print(ret) 925s + } 925s > 925s > st_dimensions(list(matrix(1, 4, 4))) # st_dimensions.default 925s from to point values 925s X1 1 1 FALSE 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 925s > 925s > if (FALSE && require("starsdata", quietly = TRUE)) { 925s + # curvilinear: 925s + s5p = system.file( 925s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 925s + package = "starsdata") 925s + print(s5p) 925s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 925s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 925s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 925s + lat = read_stars(lat_ds) 925s + lon = read_stars(lon_ds) 925s + nit = read_stars(nit_ds) 925s + nit[[1]][nit[[1]] > 9e+36] = NA 925s + 925s + ll = setNames(c(lon, lat), c("x", "y")) 925s + nit.c = st_as_stars(nit, curvilinear = ll) 925s + print(nit.c) 925s + 925s + s5p = system.file( 925s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 925s + package = "starsdata") 925s + nit.c2 = read_stars(s5p, 925s + sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 925s + curvilinear = c("//PRODUCT/latitude", "//PRODUCT/longitude")) 925s + print(all.equal(nit.c, nit.c2)) 925s + } 925s > 925s BEGIN TEST subset.R 925s 925s R version 4.3.2 (2023-10-31) -- "Eye Holes" 925s Copyright (C) 2023 The R Foundation for Statistical Computing 925s Platform: x86_64-pc-linux-gnu (64-bit) 925s 925s R is free software and comes with ABSOLUTELY NO WARRANTY. 925s You are welcome to redistribute it under certain conditions. 925s Type 'license()' or 'licence()' for distribution details. 925s 925s R is a collaborative project with many contributors. 925s Type 'contributors()' for more information and 925s 'citation()' on how to cite R or R packages in publications. 925s 925s Type 'demo()' for some demos, 'help()' for on-line help, or 925s 'help.start()' for an HTML browser interface to help. 925s Type 'q()' to quit R. 925s 925s > suppressPackageStartupMessages(library(stars)) 926s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 926s > x = read_stars(tif) 926s > y = st_set_dimensions(x, "band", point = TRUE) 926s > y[,1:10, 1:10, c(1,4,3,2)] 926s stars object with 3 dimensions and 1 attribute 926s attribute(s): 926s Min. 1st Qu. Median Mean 3rd Qu. Max. 926s L7_ETMs.tif 25 45 57 56.535 64 97 926s dimension(s): 926s from to offset delta refsys point values x/y 926s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 926s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 926s band 1 4 NA NA NA TRUE 1,...,2 926s > y = st_set_dimensions(x, "band", point = NA) 926s > y[,1:10, 1:10, c(1,4,3,2)] 926s stars object with 3 dimensions and 1 attribute 926s attribute(s): 926s Min. 1st Qu. Median Mean 3rd Qu. Max. 926s L7_ETMs.tif 25 45 57 56.535 64 97 926s dimension(s): 926s from to offset delta refsys point values x/y 926s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 926s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 926s band 1 4 NA NA NA NA [1,2),...,[2,3) 926s > y = st_set_dimensions(x, "band", point = FALSE) 926s > y[,1:10, 1:10, c(1,4,3,2)] 926s stars object with 3 dimensions and 1 attribute 926s attribute(s): 926s Min. 1st Qu. Median Mean 3rd Qu. Max. 926s L7_ETMs.tif 25 45 57 56.535 64 97 926s dimension(s): 926s from to offset delta refsys point values x/y 926s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 926s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 926s band 1 4 NA NA NA FALSE [1,2),...,[2,3) 926s > y = st_set_dimensions(x, "band", values = letters[1:6]) 926s > y[,1:10, 1:10, c(1,4,3,2)] 926s stars object with 3 dimensions and 1 attribute 926s attribute(s): 926s Min. 1st Qu. Median Mean 3rd Qu. Max. 926s L7_ETMs.tif 25 45 57 56.535 64 97 926s dimension(s): 926s from to offset delta refsys point values x/y 926s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 926s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 926s band 1 4 NA NA NA NA a,...,b 926s > y = st_set_dimensions(x, "band", values = letters[1:6], point = NA) 926s > y[,1:10, 1:10, c(1,4,3,2)] 926s stars object with 3 dimensions and 1 attribute 926s attribute(s): 926s Min. 1st Qu. Median Mean 3rd Qu. Max. 926s L7_ETMs.tif 25 45 57 56.535 64 97 926s dimension(s): 926s from to offset delta refsys point values x/y 926s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 926s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 926s band 1 4 NA NA NA NA a,...,b 926s > y = st_set_dimensions(x, "band", values = letters[1:6], point = TRUE) 926s > y[,1:10, 1:10, c(1,4,3,2)] 926s stars object with 3 dimensions and 1 attribute 926s attribute(s): 926s Min. 1st Qu. Median Mean 3rd Qu. Max. 926s L7_ETMs.tif 25 45 57 56.535 64 97 926s dimension(s): 926s from to offset delta refsys point values x/y 926s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 926s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 926s band 1 4 NA NA NA TRUE a,...,b 926s > 926s BEGIN TEST testthat.R 926s 926s R version 4.3.2 (2023-10-31) -- "Eye Holes" 926s Copyright (C) 2023 The R Foundation for Statistical Computing 926s Platform: x86_64-pc-linux-gnu (64-bit) 926s 926s R is free software and comes with ABSOLUTELY NO WARRANTY. 926s You are welcome to redistribute it under certain conditions. 926s Type 'license()' or 'licence()' for distribution details. 926s 926s R is a collaborative project with many contributors. 926s Type 'contributors()' for more information and 926s 'citation()' on how to cite R or R packages in publications. 926s 926s Type 'demo()' for some demos, 'help()' for on-line help, or 926s 'help.start()' for an HTML browser interface to help. 926s Type 'q()' to quit R. 926s 926s > ## load dependencies 926s > library(testthat) 926s > suppressPackageStartupMessages(library(stars)) 927s > 927s > ## test package 927s > test_check("stars") 932s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 932s 932s == Skipped tests (5) =========================================================== 932s * On CRAN (4): 'test_ncdf.R:1:1', 'test_ncproxy.R:1:1', 'test_osm.R:4:3', 932s 'test_rectilinear.R:89:3' 932s * cubble cannot be loaded (1): 'test_cubble.R:2:3' 932s 932s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 932s > 932s BEGIN TEST tidy.R 932s 932s R version 4.3.2 (2023-10-31) -- "Eye Holes" 932s Copyright (C) 2023 The R Foundation for Statistical Computing 932s Platform: x86_64-pc-linux-gnu (64-bit) 932s 932s R is free software and comes with ABSOLUTELY NO WARRANTY. 932s You are welcome to redistribute it under certain conditions. 932s Type 'license()' or 'licence()' for distribution details. 932s 932s R is a collaborative project with many contributors. 932s Type 'contributors()' for more information and 932s 'citation()' on how to cite R or R packages in publications. 932s 932s Type 'demo()' for some demos, 'help()' for on-line help, or 932s 'help.start()' for an HTML browser interface to help. 932s Type 'q()' to quit R. 932s 932s > suppressPackageStartupMessages(library(stars)) 933s > 933s > if (require(dplyr, quietly = TRUE)) { 933s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 933s + x <- read_stars(tif) 933s + (y <- x %>% select(L7_ETMs.tif)) 933s + (y <- x %>% filter(band > 2)) 933s + (z <- x %>% mutate(foo = 2* L7_ETMs.tif)) 933s + x %>% pull(L7_ETMs.tif) %>% class() 933s + x %>% filter(x > 289900) 933s + x %>% slice("x", 50:100) 933s + 933s + suppressPackageStartupMessages(library(ggplot2)) 933s + ggplot() + geom_stars(data = x) + coord_equal() + facet_wrap(~band) 933s + ggplot() + geom_stars(data = x[,c(1:50,52:100),c(1:45, 50:60)]) + 933s + coord_equal() 933s + ggplot() + geom_stars(data = x[,1:10,1:10,1:2], sf = TRUE) + facet_wrap(~band) 933s + 933s + 933s + # see https://github.com/r-spatial/stars/issues/539 : 933s + x <- read_stars(system.file("tif/L7_ETMs.tif", package = "stars")) 933s + y <- transmute(x, L7_ETMs.tif = units::set_units(L7_ETMs.tif, degree_C)) # same as x but with units 933s + 933s + x - slice(x, 'band', 1) # runs as expected, recycling the second object 933s + try(y - slice(x, 'band', 1)) # fails as expected because x is unitless 933s + try(x - slice(y, 'band', 1)) # fails as expected 933s + y - slice(y, 'band', 1) # runs as expected 933s + } 933s 933s Attaching package: 'dplyr' 933s 933s The following objects are masked from 'package:stats': 933s 933s filter, lag 933s 933s The following objects are masked from 'package:base': 933s 933s intersect, setdiff, setequal, union 933s 933s Error in Ops.units(X[[i]], ...) : 933s both operands of the expression should be "units" objects 933s Error in Ops.units(X[[i]], ...) : 933s both operands of the expression should be "units" objects 933s stars object with 3 dimensions and 1 attribute 933s attribute(s): 934s Min. 1st Qu. Median Mean 3rd Qu. Max. 934s L7_ETMs.tif [degree_Celsius] -184 -19 -8 -10.2353 0 131 934s dimension(s): 934s from to offset delta refsys point x/y 934s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 934s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 934s band 1 6 NA NA NA NA 934s > 934s BEGIN TEST transform.R 934s 934s R version 4.3.2 (2023-10-31) -- "Eye Holes" 934s Copyright (C) 2023 The R Foundation for Statistical Computing 934s Platform: x86_64-pc-linux-gnu (64-bit) 934s 934s R is free software and comes with ABSOLUTELY NO WARRANTY. 934s You are welcome to redistribute it under certain conditions. 934s Type 'license()' or 'licence()' for distribution details. 934s 934s R is a collaborative project with many contributors. 934s Type 'contributors()' for more information and 934s 'citation()' on how to cite R or R packages in publications. 934s 934s Type 'demo()' for some demos, 'help()' for on-line help, or 934s 'help.start()' for an HTML browser interface to help. 934s Type 'q()' to quit R. 934s 934s > suppressPackageStartupMessages(library(stars)) 934s > suppressPackageStartupMessages(library(lwgeom)) 934s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 934s > (x = read_stars(geomatrix)) 934s stars object with 2 dimensions and 1 attribute 934s attribute(s): 934s Min. 1st Qu. Median Mean 3rd Qu. Max. 934s geomatrix.tif 74 107 123 126.765 132 255 934s dimension(s): 935s from to offset delta refsys point x/y 935s x 1 20 1841002 1.5 WGS 84 / UTM zone 11N TRUE [x] 935s y 1 20 1144003 -1.5 WGS 84 / UTM zone 11N TRUE [y] 935s sheared raster with parameters: -5 -5 935s > new = st_crs(4326) 935s > y = st_transform(x, new) 935s > plot(st_transform(st_as_sfc(st_bbox(x)), new), col = NA, border = 'red') 935s > plot(st_as_sfc(y, as_points=FALSE), col = NA, border = 'green', axes = TRUE, add = TRUE) 935s > image(y, add = TRUE) 935s > plot(st_as_sfc(y, as_points=TRUE), pch=3, cex=.5, col = 'blue', add = TRUE) 935s > plot(st_transform(st_as_sfc(x, as_points=FALSE), new), add = TRUE) 935s > 935s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 935s > x = read_stars(tif)[,1:10,1:10,1:3] 935s > x_ = st_transform(x, st_crs(4326)) 935s > x__ = st_transform_proj(x, st_crs(4326)$proj4string) 935s > st_crs(x_) = st_crs(x__) 935s > all.equal(x_,x__) 935s [1] TRUE 935s > 935s > # x__ = st_transform(x, x_) #now in st_warp 935s > # all.equal(x_, x__) 935s > 935s > x = st_xy2sfc(x, as_points = FALSE) 935s > (x_ = st_transform(x, st_crs(4326))) 935s stars object with 2 dimensions and 1 attribute 935s attribute(s): 935s Min. 1st Qu. Median Mean 3rd Qu. Max. 935s L7_ETMs.tif 25 43 51 50.72 60 74 935s dimension(s): 935s from to refsys point 935s geometry 1 100 WGS 84 FALSE 935s band 1 3 NA NA 935s values 935s geometry POLYGON ((-34.91617 -7.94...,...,POLYGON ((-34.91385 -7.95... 935s band NULL 935s > (x__ = st_transform_proj(x, st_crs(4326))) 935s stars object with 2 dimensions and 1 attribute 935s attribute(s): 935s Min. 1st Qu. Median Mean 3rd Qu. Max. 935s L7_ETMs.tif 25 43 51 50.72 60 74 935s dimension(s): 935s from to refsys point 935s geometry 1 100 WGS 84 FALSE 935s band 1 3 NA NA 935s values 935s geometry POLYGON ((-34.91617 -7.94...,...,POLYGON ((-34.91385 -7.95... 935s band NULL 935s > all.equal(x_,x__,check.attributes = FALSE) 935s [1] TRUE 935s > 935s > # nothing to transform: now errs: 935s > try(st_transform(st_as_stars(list(matrix(1,10,10))), st_crs(4326))) 935s > try(st_transform_proj(st_as_stars(list(matrix(1,10,10))), st_crs(4326))) 935s Error in st_transform.stars(st_as_stars(list(matrix(1, 10, 10))), st_crs(4326)) : 935s !is.na(st_crs(x)) is not TRUE 935s Error in st_transform_proj.stars(st_as_stars(list(matrix(1, 10, 10))), : 935s !is.na(st_crs(x)) is not TRUE 935s > 935s BEGIN TEST warp.R 935s 935s R version 4.3.2 (2023-10-31) -- "Eye Holes" 935s Copyright (C) 2023 The R Foundation for Statistical Computing 935s Platform: x86_64-pc-linux-gnu (64-bit) 935s 935s R is free software and comes with ABSOLUTELY NO WARRANTY. 935s You are welcome to redistribute it under certain conditions. 935s Type 'license()' or 'licence()' for distribution details. 935s 935s R is a collaborative project with many contributors. 935s Type 'contributors()' for more information and 935s 'citation()' on how to cite R or R packages in publications. 935s 935s Type 'demo()' for some demos, 'help()' for on-line help, or 935s 'help.start()' for an HTML browser interface to help. 935s Type 'q()' to quit R. 935s 935s > suppressPackageStartupMessages(library(stars)) 936s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 936s > x = read_stars(geomatrix) 936s > # can stars reproduce what gdal does, by default? 936s > x2 = st_warp(x, use_gdal = TRUE, no_data_value = -9999) 936s > y = st_warp(x, x2) 936s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE) } 936s > if (interactive()) { plot(y, breaks = "equal", axes=TRUE) } 936s > names(x2) = names(y) 936s > all.equal(x2, y) # yes? 936s [1] TRUE 936s > 936s > # does gdal reproduce with stars template object? 936s > (x2 = setNames(st_warp(x, y, use_gdal = TRUE, no_data_value=-1), "file.tif")) 936s stars object with 2 dimensions and 1 attribute 936s attribute(s): 936s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 936s file.tif 74 115 123 126.4289 132 255 224 936s dimension(s): 936s from to offset delta refsys point x/y 936s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 936s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 936s > 936s > # does gdal reproduce what stars does, default cell size? 936s > (x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE)) 936s stars object with 2 dimensions and 1 attribute 936s attribute(s): 936s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 936s geomatrix.tif 74 115 123 126.4289 132 255 224 936s dimension(s): 936s from to offset delta refsys x/y 936s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N [x] 936s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N [y] 936s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 936s stars object with 2 dimensions and 1 attribute 936s attribute(s): 936s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 936s file.tif 74 115 123 126.4289 132 255 224 936s dimension(s): 936s from to offset delta refsys point x/y 936s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 936s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 936s > 936s > # try with multiple bands: 936s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 936s > (x1 = read_stars(tif)) 936s stars object with 3 dimensions and 1 attribute 936s attribute(s): 936s Min. 1st Qu. Median Mean 3rd Qu. Max. 936s L7_ETMs.tif 1 54 69 68.91242 86 255 936s dimension(s): 936s from to offset delta refsys point x/y 936s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 936s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 936s band 1 6 NA NA NA NA 936s > tifcp = tempfile(fileext = ".tif") 936s > file.copy(tif, tifcp) 936s [1] TRUE 936s > x1p = read_stars(tifcp, proxy = TRUE) 936s > st_dimensions(x1p) 936s from to offset delta refsys point x/y 936s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 936s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 936s band 1 6 NA NA NA NA 936s > (x1a = st_warp(x1, crs = st_crs(4326))) 936s stars object with 3 dimensions and 1 attribute 936s attribute(s): 936s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 936s L7_ETMs.tif 1 54 69 68.93072 86 255 8778 936s dimension(s): 936s from to offset delta refsys x/y 936s x 1 350 -34.92 0.0002592 WGS 84 [x] 936s y 1 352 -7.95 -0.0002592 WGS 84 [y] 936s band 1 6 NA NA NA 936s > (x1b = setNames(st_warp(x1, x1p, use_gdal = TRUE, no_data_value=-1), "file.tif")) 936s stars object with 3 dimensions and 1 attribute 936s attribute(s): 936s Min. 1st Qu. Median Mean 3rd Qu. Max. 936s file.tif 1 54 69 68.91242 86 255 936s dimension(s): 936s from to offset delta refsys point x/y 936s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 936s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 936s band 1 6 NA NA NA NA 936s > 936s > # does gdal reproduce what stars does? Smaller grid: 936s > (x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE, cellsize = 3)) 936s stars object with 2 dimensions and 1 attribute 936s attribute(s): 936s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 936s geomatrix.tif 74 107 123 126.6857 132 255 727 936s dimension(s): 936s from to offset delta refsys x/y 936s x 1 44 1840902 3 WGS 84 / UTM zone 11N [x] 936s y 1 44 1144003 -3 WGS 84 / UTM zone 11N [y] 936s > # x2 = x2[,2:43,2:43] 936s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE, reset = FALSE) } 936s > if (interactive()) { plot(st_as_sfc(st_bbox(x2)), add = TRUE, col = NA, border = 'red') } 936s > ### doesn't work: FIXME: check with more recent GDAL: 936s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 936s stars object with 2 dimensions and 1 attribute 936s attribute(s): 936s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 936s file.tif 74 107 123 126.6584 132 255 727 936s dimension(s): 936s from to offset delta refsys point x/y 936s x 1 44 1840902 3 WGS 84 / UTM zone 11N FALSE [x] 936s y 1 44 1144003 -3 WGS 84 / UTM zone 11N FALSE [y] 936s > if (interactive()) { plot(y, breaks = "equal") } 936s > names(x2) = names(y) 936s > # isTRUE(all.equal(x2, y, check.attributes=FALSE)) 936s > mean(as.vector(x2[[1]]==y[[1]]), na.rm = TRUE) 936s [1] 0.9958644 936s > unique(as.vector(x2[[1]]-y[[1]])) 936s [1] NA 0 -33 -25 25 49 17 936s > 936s > g = st_as_stars() 936s > attr(g, "dimensions")$x$offset = 0 936s > g$values = as.vector(t(matrix(seq_len(prod(dim(g))), 180, 360))) 936s > if (interactive()) { plot(g, axes=TRUE) } 936s > a = st_warp(g, st_as_stars(), use_gdal=FALSE) 936s > b = st_warp(g, st_as_stars(), use_gdal=TRUE, no_data_value = -1) 937s > all.equal(a, b, check.attributes = FALSE) 937s [1] TRUE 937s > 937s BEGIN TEST write.R 937s 937s R version 4.3.2 (2023-10-31) -- "Eye Holes" 937s Copyright (C) 2023 The R Foundation for Statistical Computing 937s Platform: x86_64-pc-linux-gnu (64-bit) 937s 937s R is free software and comes with ABSOLUTELY NO WARRANTY. 937s You are welcome to redistribute it under certain conditions. 937s Type 'license()' or 'licence()' for distribution details. 937s 937s R is a collaborative project with many contributors. 937s Type 'contributors()' for more information and 937s 'citation()' on how to cite R or R packages in publications. 937s 937s Type 'demo()' for some demos, 'help()' for on-line help, or 937s 'help.start()' for an HTML browser interface to help. 937s Type 'q()' to quit R. 937s 937s > suppressPackageStartupMessages(library(stars)) 937s > 937s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 937s > (x = read_stars(tif)) 937s stars object with 3 dimensions and 1 attribute 937s attribute(s): 937s Min. 1st Qu. Median Mean 3rd Qu. Max. 937s L7_ETMs.tif 1 54 69 68.91242 86 255 937s dimension(s): 938s from to offset delta refsys point x/y 938s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 938s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 938s band 1 6 NA NA NA NA 938s > 938s > # write stars object: 938s > write_stars(x, tempfile(), driver = "GTiff") 938s > 938s > # write stars_proxy object: 938s > (x = read_stars(tif, proxy = TRUE)) 938s stars_proxy object with 1 attribute in 1 file(s): 938s $L7_ETMs.tif 938s [1] "[...]/L7_ETMs.tif" 938s 938s dimension(s): 938s from to offset delta refsys point x/y 938s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 938s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 938s band 1 6 NA NA NA NA 938s > write_stars(x, tempfile(), driver = "GTiff") 938s 938s > 938s autopkgtest [01:14:43]: test run-unit-test: -----------------------] 938s run-unit-test PASS 938s autopkgtest [01:14:43]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 938s autopkgtest [01:14:43]: test pkg-r-autopkgtest: preparing testbed 1012s autopkgtest [01:15:57]: testbed dpkg architecture: amd64 1012s autopkgtest [01:15:57]: testbed apt version: 2.7.12 1012s autopkgtest [01:15:57]: test architecture: i386 1012s autopkgtest [01:15:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1012s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 1013s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 1013s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3972 kB] 1013s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 1013s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 1013s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [483 kB] 1013s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [725 kB] 1013s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 1013s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 1013s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 1013s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 1013s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4417 kB] 1013s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1305 kB] 1013s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 1013s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [27.1 kB] 1013s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [96.1 kB] 1013s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 1016s Fetched 11.8 MB in 1s (7873 kB/s) 1016s Reading package lists... 1018s Reading package lists... 1018s Building dependency tree... 1018s Reading state information... 1019s Calculating upgrade... 1019s The following packages will be upgraded: 1019s libc-bin libc6 locales 1019s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1019s Need to get 8176 kB of archives. 1019s After this operation, 2048 B of additional disk space will be used. 1019s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc6 amd64 2.39-0ubuntu6 [3262 kB] 1019s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libc-bin amd64 2.39-0ubuntu6 [682 kB] 1019s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 locales all 2.39-0ubuntu6 [4232 kB] 1019s Preconfiguring packages ... 1019s Fetched 8176 kB in 0s (85.9 MB/s) 1020s (Reading database ... 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1031s linux-generic is already the newest version (6.8.0-11.11+1). 1031s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1031s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 1031s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 1031s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 1034s Reading package lists... 1034s Reading package lists... 1034s Building dependency tree... 1034s Reading state information... 1034s Calculating upgrade... 1034s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1034s Reading package lists... 1035s Building dependency tree... 1035s Reading state information... 1035s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1035s autopkgtest [01:16:20]: rebooting testbed after setup commands that affected boot 1057s Note, using file '/tmp/autopkgtest.wAsk7p/3-autopkgtest-satdep.dsc' to get the build dependencies 1057s Reading package lists... 1058s Building dependency tree... 1058s Reading state information... 1058s Starting pkgProblemResolver with broken count: 0 1058s Starting 2 pkgProblemResolver with broken count: 0 1058s Done 1058s The following NEW packages will be installed: 1058s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 1058s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 1058s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 1058s g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 1058s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins gfortran 1058s gfortran-13 gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu 1058s icu-devtools javascript-common libaec0 libarmadillo12 libarpack2 libasan8 1058s libatomic1 libblas-dev libblas3 libblosc1 libbz2-dev libc-dev-bin libc6-dev 1058s libcairo2 libcc1-0 libcfitsio10 libcrypt-dev libdatrie1 libdav1d7 libde265-0 1058s libdeflate0 libfontconfig1 libfreexl1 libfyba0 libgcc-13-dev libgdal34 1058s libgeos-c1v5 libgeos3.12.1 libgeotiff5 libgfortran-13-dev libgfortran5 1058s libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1 1058s libhdf5-hl-100 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 1058s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 1058s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 1058s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 1058s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 1058s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 1058s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 1058s libkmlbase1 libkmldom1 libkmlengine1 liblapack-dev liblapack3 liblcms2-2 1058s liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev libminizip1 libmpc3 1058s libmysqlclient21 libncurses-dev libnetcdf19 libodbc2 libodbcinst2 libogdi4.1 1058s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 1058s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 1058s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpoppler134 libpq5 1058s libproj25 libqhull-r8.0 libquadmath0 libreadline-dev librttopo1 libsharpyuv0 1058s libsm6 libsnappy1v5 libspatialite8 libstdc++-13-dev libsuperlu6 libsz2 1058s libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 1058s libudunits2-0 libudunits2-data liburiparser1 libwebp7 libxcb-render0 1058s libxcb-shm0 libxerces-c3.2 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev 1058s littler mysql-common node-bootstrap-sass node-html5shiv node-normalize.css 1058s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 1058s proj-data r-base-core r-base-dev r-cran-abind r-cran-areal r-cran-askpass 1058s r-cran-base64enc r-cran-bdsmatrix r-cran-brio r-cran-bslib r-cran-cachem 1058s r-cran-cairo r-cran-callr r-cran-class r-cran-classint r-cran-cli 1058s r-cran-clue r-cran-cluster r-cran-codetools r-cran-collapse 1058s r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon 1058s r-cran-curl r-cran-dbi r-cran-deldir r-cran-desc r-cran-diffobj 1058s r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-ellipsis r-cran-evaluate 1058s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fnn r-cran-fontawesome 1058s r-cran-formula r-cran-fs r-cran-future r-cran-future.apply r-cran-generics 1058s r-cran-ggforce r-cran-ggplot2 r-cran-ggthemes r-cran-globals r-cran-glue 1058s r-cran-goftest r-cran-gridextra r-cran-gtable r-cran-highr r-cran-htmltools 1058s r-cran-httpuv r-cran-httr r-cran-intervals r-cran-isoband r-cran-jquerylib 1058s r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later 1058s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 1058s r-cran-littler r-cran-lmtest r-cran-lwgeom r-cran-magrittr r-cran-mapdata 1058s r-cran-maps r-cran-mass r-cran-matrix r-cran-maxlik r-cran-memoise 1058s r-cran-mgcv r-cran-mime r-cran-misctools r-cran-munsell r-cran-ncdfgeom 1058s r-cran-ncmeta r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-pbapply 1058s r-cran-pcict r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 1058s r-cran-pkgload r-cran-plm r-cran-polyclip r-cran-praise r-cran-processx 1058s r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 1058s r-cran-randomforest r-cran-rappdirs r-cran-raster r-cran-rbibutils 1058s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rdpack 1058s r-cran-rematch2 r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf 1058s r-cran-rpart r-cran-rprojroot r-cran-s2 r-cran-sandwich r-cran-sass 1058s r-cran-scales r-cran-sf r-cran-shiny r-cran-sourcetools r-cran-sp 1058s r-cran-spacetime r-cran-spatstat r-cran-spatstat.data 1058s r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.linnet 1058s r-cran-spatstat.model r-cran-spatstat.random r-cran-spatstat.sparse 1058s r-cran-spatstat.utils r-cran-stars r-cran-stringi r-cran-stringr 1058s r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor r-cran-terra 1058s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 1058s r-cran-tweenr r-cran-units r-cran-utf8 r-cran-vctrs r-cran-viridis 1058s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk r-cran-xfun 1058s r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo rpcsvc-proto unixodbc-common 1058s unzip x11-common xdg-utils zip zlib1g-dev 1058s 0 upgraded, 343 newly installed, 0 to remove and 0 not upgraded. 1058s Need to get 375 MB of archives. 1058s After this operation, 1102 MB of additional disk space will be used. 1058s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu6 [20.4 kB] 1058s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 1058s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 1058s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 1058s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu6 [2126 kB] 1058s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 1058s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 1058s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 1058s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 1058s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 1058s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 1058s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 1058s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 1058s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 1058s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 1058s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 1058s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 1058s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 1058s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 1058s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 1059s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 1059s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 1059s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 1059s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 1059s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 1059s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 1059s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 1059s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 1059s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 1059s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 1059s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 1059s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 1059s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 1059s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 1059s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 1059s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 1059s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 1059s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 1059s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 1059s Get:40 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 1059s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 1059s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 gdal-data all 3.8.4+dfsg-1 [261 kB] 1059s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 gdal-plugins amd64 3.8.4+dfsg-1 [24.5 kB] 1059s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 1059s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 1059s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 1059s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 1059s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 1059s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 1059s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 1059s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 1059s Get:52 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 1059s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 1059s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 1059s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libarpack2 amd64 3.9.1-1 [105 kB] 1059s Get:56 http://ftpmaster.internal/ubuntu noble/universe amd64 libsuperlu6 amd64 6.0.1+dfsg1-1 [184 kB] 1059s Get:57 http://ftpmaster.internal/ubuntu noble/universe amd64 libarmadillo12 amd64 1:12.6.7+dfsg-1 [135 kB] 1059s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 1059s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libsnappy1v5 amd64 1.1.10-1 [28.4 kB] 1059s Get:60 http://ftpmaster.internal/ubuntu noble/universe amd64 libblosc1 amd64 1.21.5+ds-1 [36.5 kB] 1059s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 1059s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 1059s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 1059s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 1059s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 1059s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 1059s Get:67 http://ftpmaster.internal/ubuntu noble/universe amd64 libcfitsio10 amd64 4.3.1-1 [528 kB] 1059s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 1059s Get:69 http://ftpmaster.internal/ubuntu noble/universe amd64 libdav1d7 amd64 1.4.0-1 [605 kB] 1059s Get:70 http://ftpmaster.internal/ubuntu noble/universe amd64 libde265-0 amd64 1.0.15-1 [192 kB] 1059s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 1059s Get:72 http://ftpmaster.internal/ubuntu noble/universe amd64 libfyba0 amd64 4.1.1-8 [119 kB] 1059s Get:73 http://ftpmaster.internal/ubuntu noble/universe amd64 libminizip1 amd64 1:1.3.dfsg-3ubuntu1 [21.8 kB] 1059s Get:74 http://ftpmaster.internal/ubuntu noble/universe amd64 libfreexl1 amd64 2.0.0-1 [41.8 kB] 1059s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeos3.12.1 amd64 3.12.1-1 [852 kB] 1059s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeos-c1v5 amd64 3.12.1-1 [96.1 kB] 1059s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 proj-data all 9.3.1-1 [7867 kB] 1059s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 1059s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 1059s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 1059s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 1059s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 1059s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 1059s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 1059s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libproj25 amd64 9.3.1-1 [1379 kB] 1059s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeotiff5 amd64 1.7.1-5 [62.5 kB] 1059s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libgif7 amd64 5.2.1-2.5 [34.0 kB] 1059s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf4-0-alt amd64 4.2.16-3 [282 kB] 1059s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 1059s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 1059s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif-plugin-dav1d amd64 1.17.6-1ubuntu1 [10.9 kB] 1059s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif-plugin-libde265 amd64 1.17.6-1ubuntu1 [9024 B] 1059s Get:93 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif1 amd64 1.17.6-1ubuntu1 [325 kB] 1059s Get:94 http://ftpmaster.internal/ubuntu noble/universe amd64 liburiparser1 amd64 0.9.7+dfsg-2 [35.9 kB] 1059s Get:95 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmlbase1 amd64 1.3.0-10 [47.4 kB] 1059s Get:96 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmldom1 amd64 1.3.0-10 [151 kB] 1059s Get:97 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmlengine1 amd64 1.3.0-10 [69.3 kB] 1059s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 mysql-common all 5.8+1.1.0 [6626 B] 1059s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libmysqlclient21 amd64 8.0.36-1 [1283 kB] 1059s Get:100 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB] 1059s Get:101 http://ftpmaster.internal/ubuntu noble/universe amd64 libnetcdf19 amd64 1:4.9.2-3ubuntu1 [472 kB] 1059s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libltdl7 amd64 2.4.7-7 [40.5 kB] 1059s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libodbc2 amd64 2.3.12-1 [159 kB] 1059s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 unixodbc-common all 2.3.12-1 [8524 B] 1059s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libodbcinst2 amd64 2.3.12-1 [30.9 kB] 1059s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 libogdi4.1 amd64 4.1.1+ds-1 [218 kB] 1059s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libopenjp2-7 amd64 2.5.0-2 [174 kB] 1059s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 liblcms2-2 amd64 2.14-2 [161 kB] 1059s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpoppler134 amd64 24.02.0-1ubuntu2 [1112 kB] 1059s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpq5 amd64 16.2-1 [138 kB] 1059s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 libqhull-r8.0 amd64 2020.2-6 [194 kB] 1059s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 librttopo1 amd64 1.1.0-3 [191 kB] 1059s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 libspatialite8 amd64 5.1.0-1 [2055 kB] 1059s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 libxerces-c3.2 amd64 3.2.4+debian-1.1 [1110 kB] 1059s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 libgdal34 amd64 3.8.4+dfsg-1 [8343 kB] 1059s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 1059s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 1059s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 1059s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 1059s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 1059s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 1059s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 1059s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 1059s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 1059s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 1059s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 1059s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 1059s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 1059s Get:129 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 1059s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1059s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 1059s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 1059s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 1059s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 1059s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 1059s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 1059s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 1059s Get:138 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 1059s Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 1059s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 1059s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 1059s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 1059s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 1059s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 1059s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 1059s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 1059s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 1059s Get:148 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 1059s Get:149 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 1059s Get:150 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 1059s Get:151 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 1059s Get:152 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 1059s Get:153 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 1059s Get:154 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 1059s Get:155 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 1059s Get:156 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 1059s Get:157 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 1059s Get:158 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 1059s Get:159 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 1059s Get:160 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.14-1 [779 kB] 1059s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 libudunits2-data all 2.2.28-7 [19.3 kB] 1059s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 libudunits2-0 amd64 2.2.28-7 [54.2 kB] 1059s Get:163 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 1059s Get:164 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 1059s Get:165 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 1059s Get:166 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 1059s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 1060s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 1060s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 1060s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 1060s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 1060s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 1060s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 1060s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 1060s Get:175 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 1060s Get:176 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 1060s Get:177 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 1060s Get:178 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 1060s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 1060s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 1060s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 1060s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 1060s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 1060s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 1060s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 1060s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 1060s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 1060s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 1060s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 1060s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 1060s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 1060s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 1060s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 1060s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 1060s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 1060s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 1060s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 1060s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 1060s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 1060s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-class amd64 7.3-22-2 [88.3 kB] 1060s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 1060s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-e1071 amd64 1.7-14-1 [558 kB] 1060s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-kernsmooth amd64 2.23-22-1 [91.7 kB] 1060s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-classint amd64 0.4-10+dfsg-1 [106 kB] 1060s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 1060s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 1060s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 1060s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-wk amd64 0.9.1-1 [1784 kB] 1060s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-s2 amd64 1.1.6-1 [1980 kB] 1060s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-units amd64 0.8-5+dfsg-1 [275 kB] 1060s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sf amd64 1.0-15+dfsg-1 [3028 kB] 1060s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 1060s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 1060s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 1060s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 1060s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bdsmatrix amd64 1.3-6-1 [293 kB] 1060s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 1060s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 1060s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 1060s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 1060s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 1060s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 1060s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 1060s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 1060s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 1060s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 1060s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 1060s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 1060s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 1060s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 1060s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 1060s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 1060s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 1060s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 1060s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cluster amd64 2.1.6-1 [554 kB] 1060s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-clue amd64 0.3-65-1 [960 kB] 1060s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 1060s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-collapse amd64 2.0.10-1 [3112 kB] 1060s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 1060s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 1060s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 1060s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rex all 1.2.1-1 [129 kB] 1060s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 1060s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 1060s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 1060s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 1060s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 1060s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 1060s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 1060s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-deldir amd64 2.0-4-1 [270 kB] 1060s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 1060s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 1060s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 1060s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 1060s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fnn amd64 1.1.4-1 [122 kB] 1060s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 1060s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 1060s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-globals all 0.16.2-1 [117 kB] 1060s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 1060s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-parallelly amd64 1.37.1-1 [365 kB] 1060s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 1060s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-future.apply all 1.11.1+dfsg-1 [171 kB] 1060s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 1060s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 1060s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 1060s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 1060s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 1060s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 1060s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 1060s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 1060s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 1060s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 1060s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 1060s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 1060s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tweenr amd64 2.0.2-1 [397 kB] 1060s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-polyclip amd64 1.10-6-1 [113 kB] 1060s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-systemfonts amd64 1.0.5-1 [229 kB] 1060s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppeigen amd64 0.3.3.9.4-1 [1189 kB] 1060s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggforce amd64 0.4.1-1 [1846 kB] 1060s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 1060s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 1060s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggthemes all 5.1.0-1 [434 kB] 1060s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] 1060s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 1060s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 1060s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 1060s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 1060s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 1060s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 1060s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-intervals amd64 0.15.4-1 [756 kB] 1060s Get:291 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 1060s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 1060s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB] 1060s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB] 1060s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lwgeom amd64 0.2-13-3 [420 kB] 1060s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-maps amd64 3.4.2-1 [2359 kB] 1060s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 1060s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB] 1060s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sandwich all 3.1-0-1 [1484 kB] 1061s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-maxlik all 1.5-2-1 [1550 kB] 1061s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rnetcdf amd64 2.9-1-1 [232 kB] 1061s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 1061s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ncmeta all 0.3.6-1 [360 kB] 1061s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stars all 0.6-4-1 [4030 kB] 1061s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 1061s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 1061s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pcict amd64 0.5-4.4-1 [94.4 kB] 1061s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 1061s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 1061s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 1061s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rbibutils amd64 2.2.16-1 [754 kB] 1061s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rdpack all 2.6-1 [742 kB] 1061s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plm all 2.6-3-1 [2141 kB] 1061s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 1061s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-randomforest amd64 4.7-1.1-1 [215 kB] 1061s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sp amd64 1:2.1-2+dfsg-1 [1447 kB] 1061s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-terra amd64 1.7-65-1 [3676 kB] 1061s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-raster amd64 3.6-26-1 [3118 kB] 1061s Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 1061s Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 1061s Get:321 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 1061s Get:322 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 1061s Get:323 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 1061s Get:324 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 1061s Get:325 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 1061s Get:326 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 1061s Get:327 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 1061s Get:328 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rpart amd64 4.1.23-1 [661 kB] 1061s Get:329 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xts amd64 0.13.2-1 [772 kB] 1061s Get:330 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spacetime all 1.3-1-1 [2804 kB] 1061s Get:331 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.utils amd64 3.0-4-1 [361 kB] 1061s Get:332 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.data all 3.0-4-1 [4090 kB] 1061s Get:333 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.geom amd64 3.2-8-1 [3817 kB] 1061s Get:334 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.random amd64 3.2-2-1 [1140 kB] 1061s Get:335 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] 1061s Get:336 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.sparse amd64 3.0-3-1 [215 kB] 1061s Get:337 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.explore amd64 3.2-5-1 [3283 kB] 1061s Get:338 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.model amd64 3.2-8-1 [3290 kB] 1061s Get:339 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.linnet amd64 3.1-3-1 [1408 kB] 1061s Get:340 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat amd64 3.0-7-1 [3817 kB] 1061s Get:341 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 1061s Get:342 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 1061s Get:343 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 1062s Preconfiguring packages ... 1062s Fetched 375 MB in 3s (140 MB/s) 1062s Selecting previously unselected package libc-dev-bin. 1062s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 1062s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu6_amd64.deb ... 1062s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 1062s Selecting previously unselected package linux-libc-dev:amd64. 1062s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 1062s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 1062s Selecting previously unselected package libcrypt-dev:amd64. 1062s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 1062s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 1062s Selecting previously unselected package rpcsvc-proto. 1062s Preparing to unpack .../003-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 1062s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 1062s Selecting previously unselected package libc6-dev:amd64. 1062s Preparing to unpack .../004-libc6-dev_2.39-0ubuntu6_amd64.deb ... 1062s Unpacking libc6-dev:amd64 (2.39-0ubuntu6) ... 1062s Selecting previously unselected package libisl23:amd64. 1062s Preparing to unpack .../005-libisl23_0.26-3_amd64.deb ... 1062s Unpacking libisl23:amd64 (0.26-3) ... 1062s Selecting previously unselected package libmpc3:amd64. 1062s Preparing to unpack .../006-libmpc3_1.3.1-1_amd64.deb ... 1062s Unpacking libmpc3:amd64 (1.3.1-1) ... 1062s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 1062s Preparing to unpack .../007-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1062s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1063s Selecting previously unselected package cpp-13. 1063s Preparing to unpack .../008-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 1063s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 1063s Selecting previously unselected package cpp-x86-64-linux-gnu. 1063s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1063s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1063s Selecting previously unselected package cpp. 1063s Preparing to unpack .../010-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 1063s Unpacking cpp (4:13.2.0-7ubuntu1) ... 1063s Selecting previously unselected package libcc1-0:amd64. 1063s Preparing to unpack .../011-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 1063s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 1063s Selecting previously unselected package libgomp1:amd64. 1063s Preparing to unpack .../012-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 1063s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 1063s Selecting previously unselected package libitm1:amd64. 1063s Preparing to unpack .../013-libitm1_14-20240303-1ubuntu1_amd64.deb ... 1063s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 1063s Selecting previously unselected package libatomic1:amd64. 1063s Preparing to unpack .../014-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 1063s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 1063s Selecting previously unselected package libasan8:amd64. 1063s Preparing to unpack .../015-libasan8_14-20240303-1ubuntu1_amd64.deb ... 1063s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 1063s Selecting previously unselected package liblsan0:amd64. 1063s Preparing to unpack .../016-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 1063s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 1063s Selecting previously unselected package libtsan2:amd64. 1063s Preparing to unpack .../017-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 1063s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 1063s Selecting previously unselected package libubsan1:amd64. 1063s Preparing to unpack .../018-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 1063s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 1063s Selecting previously unselected package libhwasan0:amd64. 1063s Preparing to unpack .../019-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 1063s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 1063s Selecting previously unselected package libquadmath0:amd64. 1063s Preparing to unpack .../020-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 1063s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 1063s Selecting previously unselected package libgcc-13-dev:amd64. 1063s Preparing to unpack .../021-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 1063s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 1063s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 1063s Preparing to unpack .../022-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1063s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1064s Selecting previously unselected package gcc-13. 1064s Preparing to unpack .../023-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 1064s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 1064s Selecting previously unselected package gcc-x86-64-linux-gnu. 1064s Preparing to unpack .../024-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1064s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1064s Selecting previously unselected package gcc. 1064s Preparing to unpack .../025-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 1064s Unpacking gcc (4:13.2.0-7ubuntu1) ... 1064s Selecting previously unselected package libstdc++-13-dev:amd64. 1064s Preparing to unpack .../026-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 1064s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 1064s Selecting previously unselected package g++-13-x86-64-linux-gnu. 1064s Preparing to unpack .../027-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1064s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1064s Selecting previously unselected package g++-13. 1064s Preparing to unpack .../028-g++-13_13.2.0-17ubuntu2_amd64.deb ... 1064s Unpacking g++-13 (13.2.0-17ubuntu2) ... 1064s Selecting previously unselected package g++-x86-64-linux-gnu. 1064s Preparing to unpack .../029-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1064s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1064s Selecting previously unselected package g++. 1064s Preparing to unpack .../030-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 1064s Unpacking g++ (4:13.2.0-7ubuntu1) ... 1064s Selecting previously unselected package build-essential. 1064s Preparing to unpack .../031-build-essential_12.10ubuntu1_amd64.deb ... 1064s Unpacking build-essential (12.10ubuntu1) ... 1064s Selecting previously unselected package dctrl-tools. 1064s Preparing to unpack .../032-dctrl-tools_2.24-3build2_amd64.deb ... 1064s Unpacking dctrl-tools (2.24-3build2) ... 1064s Selecting previously unselected package fonts-dejavu-mono. 1064s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8_all.deb ... 1064s Unpacking fonts-dejavu-mono (2.37-8) ... 1064s Selecting previously unselected package fonts-dejavu-core. 1064s Preparing to unpack .../034-fonts-dejavu-core_2.37-8_all.deb ... 1064s Unpacking fonts-dejavu-core (2.37-8) ... 1064s Selecting previously unselected package fontconfig-config. 1064s Preparing to unpack .../035-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 1065s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 1065s Selecting previously unselected package libfontconfig1:amd64. 1065s Preparing to unpack .../036-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 1065s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 1065s Selecting previously unselected package fontconfig. 1065s Preparing to unpack .../037-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 1065s Unpacking fontconfig (2.15.0-1ubuntu1) ... 1065s Selecting previously unselected package fonts-font-awesome. 1065s Preparing to unpack .../038-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 1065s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 1065s Selecting previously unselected package fonts-glyphicons-halflings. 1065s Preparing to unpack .../039-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 1065s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 1065s Selecting previously unselected package fonts-mathjax. 1065s Preparing to unpack .../040-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 1065s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 1065s Selecting previously unselected package gdal-data. 1065s Preparing to unpack .../041-gdal-data_3.8.4+dfsg-1_all.deb ... 1065s Unpacking gdal-data (3.8.4+dfsg-1) ... 1065s Selecting previously unselected package gdal-plugins:amd64. 1065s Preparing to unpack .../042-gdal-plugins_3.8.4+dfsg-1_amd64.deb ... 1065s Unpacking gdal-plugins:amd64 (3.8.4+dfsg-1) ... 1065s Selecting previously unselected package libgfortran5:amd64. 1065s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 1065s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 1065s Selecting previously unselected package libgfortran-13-dev:amd64. 1065s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 1065s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 1065s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 1065s Preparing to unpack .../045-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1065s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1065s Selecting previously unselected package gfortran-13. 1066s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 1066s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 1066s Selecting previously unselected package gfortran-x86-64-linux-gnu. 1066s Preparing to unpack .../047-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1066s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1066s Selecting previously unselected package gfortran. 1066s Preparing to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 1066s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 1066s Selecting previously unselected package icu-devtools. 1066s Preparing to unpack .../049-icu-devtools_74.2-1ubuntu1_amd64.deb ... 1066s Unpacking icu-devtools (74.2-1ubuntu1) ... 1066s Selecting previously unselected package javascript-common. 1066s Preparing to unpack .../050-javascript-common_11+nmu1_all.deb ... 1066s Unpacking javascript-common (11+nmu1) ... 1066s Selecting previously unselected package libaec0:amd64. 1066s Preparing to unpack .../051-libaec0_1.1.2-1_amd64.deb ... 1066s Unpacking libaec0:amd64 (1.1.2-1) ... 1066s Selecting previously unselected package libblas3:amd64. 1066s Preparing to unpack .../052-libblas3_3.12.0-3_amd64.deb ... 1066s Unpacking libblas3:amd64 (3.12.0-3) ... 1066s Selecting previously unselected package liblapack3:amd64. 1066s Preparing to unpack .../053-liblapack3_3.12.0-3_amd64.deb ... 1066s Unpacking liblapack3:amd64 (3.12.0-3) ... 1066s Selecting previously unselected package libarpack2:amd64. 1066s Preparing to unpack .../054-libarpack2_3.9.1-1_amd64.deb ... 1066s Unpacking libarpack2:amd64 (3.9.1-1) ... 1066s Selecting previously unselected package libsuperlu6:amd64. 1066s Preparing to unpack .../055-libsuperlu6_6.0.1+dfsg1-1_amd64.deb ... 1066s Unpacking libsuperlu6:amd64 (6.0.1+dfsg1-1) ... 1066s Selecting previously unselected package libarmadillo12. 1066s Preparing to unpack .../056-libarmadillo12_1%3a12.6.7+dfsg-1_amd64.deb ... 1066s Unpacking libarmadillo12 (1:12.6.7+dfsg-1) ... 1066s Selecting previously unselected package libblas-dev:amd64. 1066s Preparing to unpack .../057-libblas-dev_3.12.0-3_amd64.deb ... 1066s Unpacking libblas-dev:amd64 (3.12.0-3) ... 1066s Selecting previously unselected package libsnappy1v5:amd64. 1066s Preparing to unpack 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package libgeotiff5:amd64. 1067s Preparing to unpack .../085-libgeotiff5_1.7.1-5_amd64.deb ... 1067s Unpacking libgeotiff5:amd64 (1.7.1-5) ... 1067s Selecting previously unselected package libgif7:amd64. 1067s Preparing to unpack .../086-libgif7_5.2.1-2.5_amd64.deb ... 1067s Unpacking libgif7:amd64 (5.2.1-2.5) ... 1067s Selecting previously unselected package libhdf4-0-alt. 1067s Preparing to unpack .../087-libhdf4-0-alt_4.2.16-3_amd64.deb ... 1067s Unpacking libhdf4-0-alt (4.2.16-3) ... 1067s Selecting previously unselected package libsz2:amd64. 1067s Preparing to unpack .../088-libsz2_1.1.2-1_amd64.deb ... 1067s Unpacking libsz2:amd64 (1.1.2-1) ... 1067s Selecting previously unselected package libhdf5-103-1:amd64. 1067s Preparing to unpack .../089-libhdf5-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 1067s Unpacking libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 1067s Selecting previously unselected package libheif-plugin-dav1d:amd64. 1067s Preparing to unpack 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Selecting previously unselected package libopenjp2-7:amd64. 1068s Preparing to unpack .../106-libopenjp2-7_2.5.0-2_amd64.deb ... 1068s Unpacking libopenjp2-7:amd64 (2.5.0-2) ... 1068s Selecting previously unselected package liblcms2-2:amd64. 1068s Preparing to unpack .../107-liblcms2-2_2.14-2_amd64.deb ... 1068s Unpacking liblcms2-2:amd64 (2.14-2) ... 1068s Selecting previously unselected package libpoppler134:amd64. 1068s Preparing to unpack .../108-libpoppler134_24.02.0-1ubuntu2_amd64.deb ... 1068s Unpacking libpoppler134:amd64 (24.02.0-1ubuntu2) ... 1068s Selecting previously unselected package libpq5:amd64. 1068s Preparing to unpack .../109-libpq5_16.2-1_amd64.deb ... 1068s Unpacking libpq5:amd64 (16.2-1) ... 1068s Selecting previously unselected package libqhull-r8.0:amd64. 1068s Preparing to unpack .../110-libqhull-r8.0_2020.2-6_amd64.deb ... 1068s Unpacking libqhull-r8.0:amd64 (2020.2-6) ... 1068s Selecting previously unselected package librttopo1:amd64. 1068s Preparing to unpack .../111-librttopo1_1.1.0-3_amd64.deb ... 1068s Unpacking librttopo1:amd64 (1.1.0-3) ... 1068s Selecting previously unselected package libspatialite8:amd64. 1068s Preparing to unpack .../112-libspatialite8_5.1.0-1_amd64.deb ... 1068s Unpacking libspatialite8:amd64 (5.1.0-1) ... 1068s Selecting previously unselected package libxerces-c3.2:amd64. 1068s Preparing to unpack .../113-libxerces-c3.2_3.2.4+debian-1.1_amd64.deb ... 1068s Unpacking libxerces-c3.2:amd64 (3.2.4+debian-1.1) ... 1068s Selecting previously unselected package libgdal34:amd64. 1068s Preparing to unpack .../114-libgdal34_3.8.4+dfsg-1_amd64.deb ... 1068s Unpacking libgdal34:amd64 (3.8.4+dfsg-1) ... 1068s Selecting previously unselected package libgraphite2-3:amd64. 1068s Preparing to unpack .../115-libgraphite2-3_1.3.14-2_amd64.deb ... 1068s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 1068s Selecting previously unselected package libharfbuzz0b:amd64. 1068s Preparing to unpack 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package libpango-1.0-0:amd64. 1070s Preparing to unpack .../142-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 1070s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 1070s Selecting previously unselected package libpangoft2-1.0-0:amd64. 1070s Preparing to unpack .../143-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 1070s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 1070s Selecting previously unselected package libpangocairo-1.0-0:amd64. 1070s Preparing to unpack .../144-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 1070s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 1070s Selecting previously unselected package libpaper1:amd64. 1070s Preparing to unpack .../145-libpaper1_1.1.29_amd64.deb ... 1070s Unpacking libpaper1:amd64 (1.1.29) ... 1070s Selecting previously unselected package libpaper-utils. 1070s Preparing to unpack .../146-libpaper-utils_1.1.29_amd64.deb ... 1070s Unpacking libpaper-utils (1.1.29) ... 1070s Selecting previously unselected package libpcre2-16-0:amd64. 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to unpack .../152-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 1070s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 1070s Selecting previously unselected package libpng-dev:amd64. 1070s Preparing to unpack .../153-libpng-dev_1.6.43-1_amd64.deb ... 1070s Unpacking libpng-dev:amd64 (1.6.43-1) ... 1070s Selecting previously unselected package libreadline-dev:amd64. 1070s Preparing to unpack .../154-libreadline-dev_8.2-3_amd64.deb ... 1070s Unpacking libreadline-dev:amd64 (8.2-3) ... 1070s Selecting previously unselected package libsm6:amd64. 1070s Preparing to unpack .../155-libsm6_2%3a1.2.3-1build2_amd64.deb ... 1070s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 1070s Selecting previously unselected package libtcl8.6:amd64. 1070s Preparing to unpack .../156-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 1070s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 1070s Selecting previously unselected package libxft2:amd64. 1070s Preparing to unpack .../157-libxft2_2.3.6-1_amd64.deb ... 1070s Unpacking libxft2:amd64 (2.3.6-1) ... 1070s Selecting previously unselected package libxss1:amd64. 1070s Preparing to unpack .../158-libxss1_1%3a1.2.3-1build2_amd64.deb ... 1070s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 1070s Selecting previously unselected package libtk8.6:amd64. 1070s Preparing to unpack .../159-libtk8.6_8.6.14-1_amd64.deb ... 1070s Unpacking libtk8.6:amd64 (8.6.14-1) ... 1070s Selecting previously unselected package libudunits2-data. 1070s Preparing to unpack .../160-libudunits2-data_2.2.28-7_all.deb ... 1070s Unpacking libudunits2-data (2.2.28-7) ... 1070s Selecting previously unselected package libudunits2-0. 1070s Preparing to unpack .../161-libudunits2-0_2.2.28-7_amd64.deb ... 1070s Unpacking libudunits2-0 (2.2.28-7) ... 1070s Selecting previously unselected package libxt6:amd64. 1070s Preparing to unpack .../162-libxt6_1%3a1.2.1-1.1_amd64.deb ... 1070s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 1070s Selecting previously unselected package zip. 1070s Preparing to unpack .../163-zip_3.0-13_amd64.deb ... 1070s Unpacking zip (3.0-13) ... 1070s Selecting previously unselected package unzip. 1070s Preparing to unpack .../164-unzip_6.0-28ubuntu3_amd64.deb ... 1070s Unpacking unzip (6.0-28ubuntu3) ... 1070s Selecting previously unselected package xdg-utils. 1071s Preparing to unpack .../165-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 1071s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 1071s Selecting previously unselected package r-base-core. 1071s Preparing to unpack .../166-r-base-core_4.3.2-1build1_amd64.deb ... 1071s Unpacking r-base-core (4.3.2-1build1) ... 1071s Selecting previously unselected package r-cran-littler. 1071s Preparing to unpack .../167-r-cran-littler_0.3.19-1_amd64.deb ... 1071s Unpacking r-cran-littler (0.3.19-1) ... 1071s Selecting previously unselected package littler. 1071s Preparing to unpack .../168-littler_0.3.19-1_all.deb ... 1071s Unpacking littler (0.3.19-1) ... 1071s Selecting previously unselected package node-bootstrap-sass. 1071s Preparing to unpack .../169-node-bootstrap-sass_3.4.3-2_all.deb ... 1071s Unpacking node-bootstrap-sass (3.4.3-2) ... 1071s Selecting previously unselected package node-html5shiv. 1071s Preparing to unpack .../170-node-html5shiv_3.7.3+dfsg-5_all.deb ... 1071s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 1071s Selecting previously unselected package node-normalize.css. 1071s Preparing to unpack .../171-node-normalize.css_8.0.1-5_all.deb ... 1071s Unpacking node-normalize.css (8.0.1-5) ... 1071s Selecting previously unselected package pandoc-data. 1071s Preparing to unpack .../172-pandoc-data_3.1.3-1_all.deb ... 1071s Unpacking pandoc-data (3.1.3-1) ... 1071s Selecting previously unselected package pandoc. 1071s Preparing to unpack .../173-pandoc_3.1.3+ds-2_amd64.deb ... 1071s Unpacking pandoc (3.1.3+ds-2) ... 1072s Selecting previously unselected package pkgconf-bin. 1072s Preparing to unpack .../174-pkgconf-bin_1.8.1-2_amd64.deb ... 1072s Unpacking pkgconf-bin 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to unpack .../180-r-cran-abind_1.4-5-2_all.deb ... 1072s Unpacking r-cran-abind (1.4-5-2) ... 1072s Selecting previously unselected package r-cran-cli. 1072s Preparing to unpack .../181-r-cran-cli_3.6.2-1_amd64.deb ... 1072s Unpacking r-cran-cli (3.6.2-1) ... 1072s Selecting previously unselected package r-cran-generics. 1072s Preparing to unpack .../182-r-cran-generics_0.1.3-1_all.deb ... 1072s Unpacking r-cran-generics (0.1.3-1) ... 1072s Selecting previously unselected package r-cran-glue. 1072s Preparing to unpack .../183-r-cran-glue_1.7.0-1_amd64.deb ... 1072s Unpacking r-cran-glue (1.7.0-1) ... 1072s Selecting previously unselected package r-cran-rlang. 1072s Preparing to unpack .../184-r-cran-rlang_1.1.3-1_amd64.deb ... 1072s Unpacking r-cran-rlang (1.1.3-1) ... 1072s Selecting previously unselected package r-cran-lifecycle. 1072s Preparing to unpack .../185-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 1072s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 1072s Selecting previously unselected package r-cran-magrittr. 1072s Preparing to unpack .../186-r-cran-magrittr_2.0.3-1_amd64.deb ... 1072s Unpacking r-cran-magrittr (2.0.3-1) ... 1072s Selecting previously unselected package r-cran-fansi. 1072s Preparing to unpack .../187-r-cran-fansi_1.0.5-1_amd64.deb ... 1072s Unpacking r-cran-fansi (1.0.5-1) ... 1072s Selecting previously unselected package r-cran-utf8. 1072s Preparing to unpack .../188-r-cran-utf8_1.2.4-1_amd64.deb ... 1072s Unpacking r-cran-utf8 (1.2.4-1) ... 1073s Selecting previously unselected package r-cran-vctrs. 1073s Preparing to unpack .../189-r-cran-vctrs_0.6.5-1_amd64.deb ... 1073s Unpacking r-cran-vctrs (0.6.5-1) ... 1073s Selecting previously unselected package r-cran-pillar. 1073s Preparing to unpack .../190-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 1073s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 1073s Selecting previously unselected package r-cran-r6. 1073s Preparing to unpack .../191-r-cran-r6_2.5.1-1_all.deb ... 1073s Unpacking r-cran-r6 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1073s Selecting previously unselected package r-cran-classint. 1073s Preparing to unpack .../203-r-cran-classint_0.4-10+dfsg-1_amd64.deb ... 1073s Unpacking r-cran-classint (0.4-10+dfsg-1) ... 1073s Selecting previously unselected package r-cran-dbi. 1073s Preparing to unpack .../204-r-cran-dbi_1.2.2-1_all.deb ... 1073s Unpacking r-cran-dbi (1.2.2-1) ... 1073s Selecting previously unselected package r-cran-pkgkitten. 1073s Preparing to unpack .../205-r-cran-pkgkitten_0.2.3-1_all.deb ... 1073s Unpacking r-cran-pkgkitten (0.2.3-1) ... 1073s Selecting previously unselected package r-cran-rcpp. 1073s Preparing to unpack .../206-r-cran-rcpp_1.0.12-1_amd64.deb ... 1073s Unpacking r-cran-rcpp (1.0.12-1) ... 1073s Selecting previously unselected package r-cran-wk. 1073s Preparing to unpack .../207-r-cran-wk_0.9.1-1_amd64.deb ... 1073s Unpacking r-cran-wk (0.9.1-1) ... 1074s Selecting previously unselected package r-cran-s2. 1074s Preparing to unpack .../208-r-cran-s2_1.1.6-1_amd64.deb ... 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Selecting previously unselected package r-cran-ellipsis. 1074s Preparing to unpack .../220-r-cran-ellipsis_0.3.2-2_amd64.deb ... 1074s Unpacking r-cran-ellipsis (0.3.2-2) ... 1074s Selecting previously unselected package r-cran-htmltools. 1074s Preparing to unpack .../221-r-cran-htmltools_0.5.7-1_amd64.deb ... 1074s Unpacking r-cran-htmltools (0.5.7-1) ... 1074s Selecting previously unselected package r-cran-jquerylib. 1074s Preparing to unpack .../222-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 1074s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 1074s Selecting previously unselected package r-cran-jsonlite. 1074s Preparing to unpack .../223-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 1074s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 1074s Selecting previously unselected package r-cran-memoise. 1074s Preparing to unpack .../224-r-cran-memoise_2.0.1-1_all.deb ... 1074s Unpacking r-cran-memoise (2.0.1-1) ... 1074s Selecting previously unselected package r-cran-mime. 1074s Preparing to unpack .../225-r-cran-mime_0.12-1_amd64.deb ... 1074s Unpacking r-cran-mime (0.12-1) ... 1074s Selecting previously unselected package r-cran-fs. 1074s Preparing to unpack .../226-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 1074s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 1074s Selecting previously unselected package r-cran-rappdirs. 1074s Preparing to unpack .../227-r-cran-rappdirs_0.3.3-1_amd64.deb ... 1074s Unpacking r-cran-rappdirs (0.3.3-1) ... 1074s Selecting previously unselected package r-cran-sass. 1074s Preparing to unpack .../228-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 1074s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 1074s Selecting previously unselected package r-cran-bslib. 1074s Preparing to unpack .../229-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 1074s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 1075s Selecting previously unselected package r-cran-cairo. 1075s Preparing to unpack .../230-r-cran-cairo_1.6-2-1_amd64.deb ... 1075s Unpacking r-cran-cairo (1.6-2-1) ... 1075s Selecting previously unselected package r-cran-ps. 1075s Preparing to unpack .../231-r-cran-ps_1.7.6-1_amd64.deb ... 1075s Unpacking r-cran-ps (1.7.6-1) ... 1075s Selecting previously unselected package r-cran-processx. 1075s Preparing to unpack .../232-r-cran-processx_3.8.3-1_amd64.deb ... 1075s Unpacking r-cran-processx (3.8.3-1) ... 1075s Selecting previously unselected package r-cran-callr. 1075s Preparing to unpack .../233-r-cran-callr_3.7.3-2_all.deb ... 1075s Unpacking r-cran-callr (3.7.3-2) ... 1075s Selecting previously unselected package r-cran-cluster. 1075s Preparing to unpack .../234-r-cran-cluster_2.1.6-1_amd64.deb ... 1075s Unpacking r-cran-cluster (2.1.6-1) ... 1075s Selecting previously unselected package r-cran-clue. 1075s Preparing to unpack .../235-r-cran-clue_0.3-65-1_amd64.deb ... 1075s Unpacking r-cran-clue (0.3-65-1) ... 1075s Selecting previously unselected package r-cran-codetools. 1075s Preparing to unpack .../236-r-cran-codetools_0.2-19-1_all.deb ... 1075s Unpacking r-cran-codetools (0.2-19-1) ... 1075s Selecting previously unselected package r-cran-collapse. 1075s Preparing to unpack .../237-r-cran-collapse_2.0.10-1_amd64.deb ... 1075s Unpacking r-cran-collapse (2.0.10-1) ... 1075s Selecting previously unselected package r-cran-colorspace. 1075s Preparing to unpack .../238-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 1075s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 1075s Selecting previously unselected package r-cran-commonmark. 1075s Preparing to unpack .../239-r-cran-commonmark_1.9.1-1_amd64.deb ... 1075s Unpacking r-cran-commonmark (1.9.1-1) ... 1075s Selecting previously unselected package r-cran-lazyeval. 1075s Preparing to unpack .../240-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 1075s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 1075s Selecting previously unselected package r-cran-rex. 1075s Preparing to unpack .../241-r-cran-rex_1.2.1-1_all.deb ... 1075s Unpacking r-cran-rex (1.2.1-1) ... 1075s Selecting previously unselected package r-cran-curl. 1075s Preparing to unpack .../242-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 1075s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 1075s Selecting previously unselected package r-cran-openssl. 1075s Preparing to unpack .../243-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 1075s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 1075s Selecting previously unselected package r-cran-httr. 1075s Preparing to unpack .../244-r-cran-httr_1.4.7+dfsg-1_all.deb ... 1075s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 1075s Selecting previously unselected package r-cran-crayon. 1075s Preparing to unpack .../245-r-cran-crayon_1.5.2-1_all.deb ... 1075s Unpacking r-cran-crayon (1.5.2-1) ... 1075s Selecting previously unselected package r-cran-yaml. 1075s Preparing to unpack .../246-r-cran-yaml_2.3.8-1_amd64.deb ... 1075s Unpacking r-cran-yaml (2.3.8-1) ... 1075s Selecting previously unselected package r-cran-covr. 1075s Preparing to unpack .../247-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 1075s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 1075s Selecting previously unselected package r-cran-cpp11. 1075s Preparing to unpack .../248-r-cran-cpp11_0.4.7-1_all.deb ... 1075s Unpacking r-cran-cpp11 (0.4.7-1) ... 1075s Selecting previously unselected package r-cran-deldir. 1075s Preparing to unpack .../249-r-cran-deldir_2.0-4-1_amd64.deb ... 1075s Unpacking r-cran-deldir (2.0-4-1) ... 1075s Selecting previously unselected package r-cran-desc. 1076s Preparing to unpack .../250-r-cran-desc_1.4.3-1_all.deb ... 1076s Unpacking r-cran-desc (1.4.3-1) ... 1076s Selecting previously unselected package r-cran-diffobj. 1076s Preparing to unpack .../251-r-cran-diffobj_0.3.5-1_amd64.deb ... 1076s Unpacking r-cran-diffobj (0.3.5-1) ... 1076s Selecting previously unselected package r-cran-evaluate. 1076s Preparing to unpack .../252-r-cran-evaluate_0.23-1_all.deb ... 1076s Unpacking r-cran-evaluate (0.23-1) ... 1076s Selecting previously unselected package r-cran-farver. 1076s Preparing to unpack .../253-r-cran-farver_2.1.1-1_amd64.deb ... 1076s Unpacking r-cran-farver (2.1.1-1) ... 1076s Selecting previously unselected package r-cran-fnn. 1076s Preparing to unpack .../254-r-cran-fnn_1.1.4-1_amd64.deb ... 1076s Unpacking r-cran-fnn (1.1.4-1) ... 1076s Selecting previously unselected package r-cran-fontawesome. 1076s Preparing to unpack .../255-r-cran-fontawesome_0.5.2-1_all.deb ... 1076s Unpacking r-cran-fontawesome (0.5.2-1) ... 1076s Selecting previously unselected package r-cran-formula. 1076s Preparing to unpack .../256-r-cran-formula_1.2-5-1_all.deb ... 1076s Unpacking r-cran-formula (1.2-5-1) ... 1076s Selecting previously unselected package r-cran-globals. 1076s Preparing to unpack .../257-r-cran-globals_0.16.2-1_all.deb ... 1076s Unpacking r-cran-globals (0.16.2-1) ... 1076s Selecting previously unselected package r-cran-listenv. 1076s Preparing to unpack .../258-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 1076s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 1076s Selecting previously unselected package r-cran-parallelly. 1076s Preparing to unpack .../259-r-cran-parallelly_1.37.1-1_amd64.deb ... 1076s Unpacking r-cran-parallelly (1.37.1-1) ... 1076s Selecting previously unselected package r-cran-future. 1076s Preparing to unpack .../260-r-cran-future_1.33.1+dfsg-1_all.deb ... 1076s Unpacking r-cran-future (1.33.1+dfsg-1) ... 1076s Selecting previously unselected package r-cran-future.apply. 1076s Preparing to unpack .../261-r-cran-future.apply_1.11.1+dfsg-1_all.deb ... 1076s Unpacking r-cran-future.apply (1.11.1+dfsg-1) ... 1076s Selecting previously unselected package r-cran-gtable. 1076s Preparing to unpack .../262-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 1076s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 1076s Selecting previously unselected package r-cran-isoband. 1076s Preparing to unpack .../263-r-cran-isoband_0.2.7-1_amd64.deb ... 1076s Unpacking r-cran-isoband (0.2.7-1) ... 1076s Selecting previously unselected package r-cran-lattice. 1076s Preparing to unpack .../264-r-cran-lattice_0.22-5-1_amd64.deb ... 1076s Unpacking r-cran-lattice (0.22-5-1) ... 1076s Selecting previously unselected package r-cran-nlme. 1076s Preparing to unpack .../265-r-cran-nlme_3.1.164-1_amd64.deb ... 1076s Unpacking r-cran-nlme (3.1.164-1) ... 1076s Selecting previously unselected package r-cran-matrix. 1076s Preparing to unpack .../266-r-cran-matrix_1.6-5-1_amd64.deb ... 1076s Unpacking r-cran-matrix (1.6-5-1) ... 1076s Selecting previously unselected package r-cran-mgcv. 1076s Preparing to unpack .../267-r-cran-mgcv_1.9-1-1_amd64.deb ... 1076s Unpacking r-cran-mgcv (1.9-1-1) ... 1076s Selecting previously unselected package r-cran-labeling. 1076s Preparing to unpack .../268-r-cran-labeling_0.4.3-1_all.deb ... 1076s Unpacking r-cran-labeling (0.4.3-1) ... 1076s Selecting previously unselected package r-cran-munsell. 1076s Preparing to unpack .../269-r-cran-munsell_0.5.0-2build1_all.deb ... 1076s Unpacking r-cran-munsell (0.5.0-2build1) ... 1076s Selecting previously unselected package r-cran-rcolorbrewer. 1076s Preparing to unpack .../270-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 1076s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 1076s Selecting previously unselected package r-cran-viridislite. 1076s Preparing to unpack .../271-r-cran-viridislite_0.4.2-2_all.deb ... 1076s Unpacking r-cran-viridislite (0.4.2-2) ... 1076s Selecting previously unselected package r-cran-scales. 1076s Preparing to unpack .../272-r-cran-scales_1.3.0-1_all.deb ... 1076s Unpacking r-cran-scales (1.3.0-1) ... 1077s Selecting previously unselected package r-cran-ggplot2. 1077s Preparing to unpack .../273-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 1077s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 1077s Selecting previously unselected package r-cran-tweenr. 1077s Preparing to unpack .../274-r-cran-tweenr_2.0.2-1_amd64.deb ... 1077s Unpacking r-cran-tweenr (2.0.2-1) ... 1077s Selecting previously unselected package r-cran-polyclip. 1077s Preparing to unpack .../275-r-cran-polyclip_1.10-6-1_amd64.deb ... 1077s Unpacking r-cran-polyclip (1.10-6-1) ... 1077s Selecting previously unselected package r-cran-systemfonts. 1077s Preparing to unpack .../276-r-cran-systemfonts_1.0.5-1_amd64.deb ... 1077s Unpacking r-cran-systemfonts (1.0.5-1) ... 1077s Selecting previously unselected package r-cran-rcppeigen. 1077s Preparing to unpack .../277-r-cran-rcppeigen_0.3.3.9.4-1_amd64.deb ... 1077s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 1077s Selecting previously unselected package r-cran-ggforce. 1077s Preparing to unpack .../278-r-cran-ggforce_0.4.1-1_amd64.deb ... 1077s Unpacking r-cran-ggforce (0.4.1-1) ... 1077s Selecting previously unselected package r-cran-stringi. 1077s Preparing to unpack .../279-r-cran-stringi_1.8.3-1_amd64.deb ... 1077s Unpacking r-cran-stringi (1.8.3-1) ... 1077s Selecting previously unselected package r-cran-stringr. 1077s Preparing to unpack .../280-r-cran-stringr_1.5.1-1_all.deb ... 1077s Unpacking r-cran-stringr (1.5.1-1) ... 1077s Selecting previously unselected package r-cran-ggthemes. 1077s Preparing to unpack .../281-r-cran-ggthemes_5.1.0-1_all.deb ... 1077s Unpacking r-cran-ggthemes (5.1.0-1) ... 1077s Selecting previously unselected package r-cran-goftest. 1077s Preparing to unpack .../282-r-cran-goftest_1.2-3-1_amd64.deb ... 1077s Unpacking r-cran-goftest (1.2-3-1) ... 1077s Selecting previously unselected package r-cran-gridextra. 1077s Preparing to unpack .../283-r-cran-gridextra_2.3-3build1_all.deb ... 1077s Unpacking r-cran-gridextra (2.3-3build1) ... 1077s Selecting previously unselected package r-cran-xfun. 1077s Preparing to unpack .../284-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 1077s Unpacking r-cran-xfun (0.41+dfsg-1) ... 1077s Selecting previously unselected package r-cran-highr. 1077s Preparing to unpack .../285-r-cran-highr_0.10+dfsg-1_all.deb ... 1077s Unpacking r-cran-highr (0.10+dfsg-1) ... 1077s Selecting previously unselected package r-cran-later. 1077s Preparing to unpack .../286-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 1077s Unpacking r-cran-later (1.3.2+dfsg-1) ... 1077s Selecting previously unselected package r-cran-promises. 1077s Preparing to unpack .../287-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 1077s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 1077s Selecting previously unselected package r-cran-httpuv. 1077s Preparing to unpack .../288-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 1077s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 1077s Selecting previously unselected package r-cran-intervals. 1077s Preparing to unpack .../289-r-cran-intervals_0.15.4-1_amd64.deb ... 1077s Unpacking r-cran-intervals (0.15.4-1) ... 1077s Selecting previously unselected package libjs-mathjax. 1077s Preparing to unpack .../290-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 1077s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 1078s Selecting previously unselected package r-cran-knitr. 1078s Preparing to unpack .../291-r-cran-knitr_1.45+dfsg-1_all.deb ... 1078s Unpacking r-cran-knitr (1.45+dfsg-1) ... 1078s Selecting previously unselected package r-cran-zoo. 1078s Preparing to unpack .../292-r-cran-zoo_1.8-12-2_amd64.deb ... 1078s Unpacking r-cran-zoo (1.8-12-2) ... 1078s Selecting previously unselected package r-cran-lmtest. 1078s Preparing to unpack .../293-r-cran-lmtest_0.9.40-1_amd64.deb ... 1078s Unpacking r-cran-lmtest (0.9.40-1) ... 1078s Selecting previously unselected package r-cran-lwgeom. 1078s Preparing to unpack .../294-r-cran-lwgeom_0.2-13-3_amd64.deb ... 1078s Unpacking r-cran-lwgeom (0.2-13-3) ... 1078s Selecting previously unselected package r-cran-maps. 1078s Preparing to unpack .../295-r-cran-maps_3.4.2-1_amd64.deb ... 1078s Unpacking r-cran-maps (3.4.2-1) ... 1078s Selecting previously unselected package r-cran-mapdata. 1079s Preparing to unpack .../296-r-cran-mapdata_2.3.1-1_amd64.deb ... 1079s Unpacking r-cran-mapdata (2.3.1-1) ... 1079s Selecting previously unselected package r-cran-misctools. 1079s Preparing to unpack .../297-r-cran-misctools_0.6-28-1_all.deb ... 1079s Unpacking r-cran-misctools (0.6-28-1) ... 1079s Selecting previously unselected package r-cran-sandwich. 1079s Preparing to unpack .../298-r-cran-sandwich_3.1-0-1_all.deb ... 1079s Unpacking r-cran-sandwich (3.1-0-1) ... 1079s Selecting previously unselected package r-cran-maxlik. 1079s Preparing to unpack .../299-r-cran-maxlik_1.5-2-1_all.deb ... 1079s Unpacking r-cran-maxlik (1.5-2-1) ... 1079s Selecting previously unselected package r-cran-rnetcdf. 1079s Preparing to unpack .../300-r-cran-rnetcdf_2.9-1-1_amd64.deb ... 1079s Unpacking r-cran-rnetcdf (2.9-1-1) ... 1079s Selecting previously unselected package r-cran-tidyr. 1079s Preparing to unpack .../301-r-cran-tidyr_1.3.1-1_amd64.deb ... 1079s Unpacking r-cran-tidyr (1.3.1-1) ... 1079s Selecting previously unselected package r-cran-ncmeta. 1079s Preparing to unpack .../302-r-cran-ncmeta_0.3.6-1_all.deb ... 1079s Unpacking r-cran-ncmeta (0.3.6-1) ... 1079s Selecting previously unselected package r-cran-stars. 1079s Preparing to unpack .../303-r-cran-stars_0.6-4-1_all.deb ... 1079s Unpacking r-cran-stars (0.6-4-1) ... 1079s Selecting previously unselected package r-cran-ncdfgeom. 1079s Preparing to unpack .../304-r-cran-ncdfgeom_1.1.6+dfsg-1_all.deb ... 1079s Unpacking r-cran-ncdfgeom (1.1.6+dfsg-1) ... 1079s Selecting previously unselected package r-cran-pbapply. 1079s Preparing to unpack .../305-r-cran-pbapply_1.7-2-1_all.deb ... 1079s Unpacking r-cran-pbapply (1.7-2-1) ... 1079s Selecting previously unselected package r-cran-pcict. 1079s Preparing to unpack .../306-r-cran-pcict_0.5-4.4-1_amd64.deb ... 1079s Unpacking r-cran-pcict (0.5-4.4-1) ... 1079s Selecting previously unselected package r-cran-pkgbuild. 1079s Preparing to unpack .../307-r-cran-pkgbuild_1.4.3-1_all.deb ... 1079s Unpacking r-cran-pkgbuild (1.4.3-1) ... 1079s Selecting previously unselected package r-cran-rprojroot. 1079s Preparing to unpack .../308-r-cran-rprojroot_2.0.4-1_all.deb ... 1079s Unpacking r-cran-rprojroot (2.0.4-1) ... 1079s Selecting previously unselected package r-cran-pkgload. 1079s Preparing to unpack .../309-r-cran-pkgload_1.3.4-1_all.deb ... 1079s Unpacking r-cran-pkgload (1.3.4-1) ... 1079s Selecting previously unselected package r-cran-rbibutils. 1079s Preparing to unpack .../310-r-cran-rbibutils_2.2.16-1_amd64.deb ... 1079s Unpacking r-cran-rbibutils (2.2.16-1) ... 1080s Selecting previously unselected package r-cran-rdpack. 1080s Preparing to unpack .../311-r-cran-rdpack_2.6-1_all.deb ... 1080s Unpacking r-cran-rdpack (2.6-1) ... 1080s Selecting previously unselected package r-cran-plm. 1080s Preparing to unpack .../312-r-cran-plm_2.6-3-1_all.deb ... 1080s Unpacking r-cran-plm (2.6-3-1) ... 1080s Selecting previously unselected package r-cran-praise. 1080s Preparing to unpack .../313-r-cran-praise_1.0.0-4build1_all.deb ... 1080s Unpacking r-cran-praise (1.0.0-4build1) ... 1080s Selecting previously unselected package r-cran-randomforest. 1080s Preparing to unpack .../314-r-cran-randomforest_4.7-1.1-1_amd64.deb ... 1080s Unpacking r-cran-randomforest (4.7-1.1-1) ... 1080s Selecting previously unselected package r-cran-sp. 1080s Preparing to unpack .../315-r-cran-sp_1%3a2.1-2+dfsg-1_amd64.deb ... 1080s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 1080s Selecting previously unselected package r-cran-terra. 1080s Preparing to unpack .../316-r-cran-terra_1.7-65-1_amd64.deb ... 1080s Unpacking r-cran-terra (1.7-65-1) ... 1080s Selecting previously unselected package r-cran-raster. 1080s Preparing to unpack .../317-r-cran-raster_3.6-26-1_amd64.deb ... 1080s Unpacking r-cran-raster (3.6-26-1) ... 1080s Selecting previously unselected package r-cran-rematch2. 1080s Preparing to unpack .../318-r-cran-rematch2_2.1.2-2build1_all.deb ... 1080s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 1080s Selecting previously unselected package r-cran-tinytex. 1080s Preparing to unpack .../319-r-cran-tinytex_0.49-1_all.deb ... 1080s Unpacking r-cran-tinytex (0.49-1) ... 1080s Selecting previously unselected package libjs-modernizr. 1080s Preparing to unpack .../320-libjs-modernizr_2.6.2+ds1-5_all.deb ... 1080s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 1080s Selecting previously unselected package r-cran-xtable. 1080s Preparing to unpack .../321-r-cran-xtable_1%3a1.8-4-2_all.deb ... 1080s Unpacking r-cran-xtable (1:1.8-4-2) ... 1080s Selecting previously unselected package r-cran-sourcetools. 1080s Preparing to unpack .../322-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 1080s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 1080s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 1080s Preparing to unpack .../323-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 1080s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 1080s Selecting previously unselected package r-cran-shiny. 1080s Preparing to unpack .../324-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 1080s Unpacking r-cran-shiny 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to unpack .../330-r-cran-spatstat.utils_3.0-4-1_amd64.deb ... 1081s Unpacking r-cran-spatstat.utils (3.0-4-1) ... 1081s Selecting previously unselected package r-cran-spatstat.data. 1081s Preparing to unpack .../331-r-cran-spatstat.data_3.0-4-1_all.deb ... 1081s Unpacking r-cran-spatstat.data (3.0-4-1) ... 1081s Selecting previously unselected package r-cran-spatstat.geom. 1081s Preparing to unpack .../332-r-cran-spatstat.geom_3.2-8-1_amd64.deb ... 1081s Unpacking r-cran-spatstat.geom (3.2-8-1) ... 1081s Selecting previously unselected package r-cran-spatstat.random. 1081s Preparing to unpack .../333-r-cran-spatstat.random_3.2-2-1_amd64.deb ... 1081s Unpacking r-cran-spatstat.random (3.2-2-1) ... 1081s Selecting previously unselected package r-cran-tensor. 1081s Preparing to unpack .../334-r-cran-tensor_1.5-4_all.deb ... 1081s Unpacking r-cran-tensor (1.5-4) ... 1081s Selecting previously unselected package r-cran-spatstat.sparse. 1081s Preparing to unpack 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Setting up r-cran-gridextra (2.3-3build1) ... 1085s Setting up r-cran-scales (1.3.0-1) ... 1085s Setting up r-cran-memoise (2.0.1-1) ... 1085s Setting up r-cran-covr (3.6.4+dfsg-1) ... 1085s Setting up r-cran-promises (1.2.1+dfsg-1) ... 1085s Setting up r-cran-purrr (1.0.2-1) ... 1085s Setting up r-cran-e1071 (1.7-14-1) ... 1085s Setting up r-cran-spatstat.data (3.0-4-1) ... 1085s Setting up r-cran-maxlik (1.5-2-1) ... 1085s Setting up r-cran-spacetime (1.3-1-1) ... 1085s Setting up r-cran-htmltools (0.5.7-1) ... 1085s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 1085s Setting up r-cran-spatstat.geom (3.2-8-1) ... 1085s Setting up r-cran-pkgbuild (1.4.3-1) ... 1085s Setting up r-cran-sass (0.4.8+dfsg-1) ... 1085s Setting up r-cran-dplyr (1.1.4-1) ... 1085s Setting up r-cran-pkgload (1.3.4-1) ... 1085s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 1085s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 1085s Setting up r-cran-rematch2 (2.1.2-2build1) ... 1085s Setting up r-cran-rpart (4.1.23-1) ... 1085s Setting up r-cran-fontawesome (0.5.2-1) ... 1085s Setting up r-cran-spatstat.random (3.2-2-1) ... 1085s Setting up r-cran-plm (2.6-3-1) ... 1085s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 1085s Setting up r-cran-viridis (0.6.5-1) ... 1085s Setting up r-cran-classint (0.4-10+dfsg-1) ... 1085s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 1085s Setting up r-cran-spatstat.explore (3.2-5-1) ... 1085s Setting up r-cran-ggthemes (5.1.0-1) ... 1085s Setting up r-cran-waldo (0.5.2-1build1) ... 1085s Setting up r-cran-tidyr (1.3.1-1) ... 1085s Setting up r-cran-ggforce (0.4.1-1) ... 1085s Setting up r-cran-spatstat.model (3.2-8-1) ... 1085s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 1085s Setting up r-cran-testthat (3.2.1-1) ... 1085s Setting up r-cran-ncmeta (0.3.6-1) ... 1085s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 1085s Setting up r-cran-spatstat.linnet (3.1-3-1) ... 1085s Setting up r-cran-spatstat (3.0-7-1) ... 1085s Setting up libheif-plugin-dav1d:amd64 (1.17.6-1ubuntu1) ... 1085s Setting up libheif-plugin-libde265:amd64 (1.17.6-1ubuntu1) ... 1085s Setting up libheif1:amd64 (1.17.6-1ubuntu1) ... 1085s Setting up libgdal34:amd64 (3.8.4+dfsg-1) ... 1085s Setting up r-cran-terra (1.7-65-1) ... 1085s Setting up r-cran-sf (1.0-15+dfsg-1) ... 1085s Setting up r-cran-stars (0.6-4-1) ... 1085s Setting up r-cran-areal (0.1.8+dfsg-2) ... 1085s Setting up r-cran-raster (3.6-26-1) ... 1085s Setting up r-cran-lwgeom (0.2-13-3) ... 1085s Setting up r-cran-ncdfgeom (1.1.6+dfsg-1) ... 1085s Processing triggers for libc-bin (2.39-0ubuntu6) ... 1085s Processing triggers for man-db (2.12.0-3) ... 1086s Processing triggers for install-info (7.1-3) ... 1095s Reading package lists... 1095s Building dependency tree... 1095s Reading state information... 1096s Starting pkgProblemResolver with broken count: 0 1096s Starting 2 pkgProblemResolver with broken count: 0 1096s Done 1096s The following NEW packages will be installed: 1096s autopkgtest-satdep 1096s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 1096s Need to get 0 B/696 B of archives. 1096s After this operation, 0 B of additional disk space will be used. 1096s Get:1 /tmp/autopkgtest.wAsk7p/4-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 1097s Selecting previously unselected package autopkgtest-satdep. 1097s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 99037 files and directories currently installed.) 1097s Preparing to unpack .../4-autopkgtest-satdep.deb ... 1097s Unpacking autopkgtest-satdep (0) ... 1097s Setting up autopkgtest-satdep (0) ... 1098s (Reading database ... 99037 files and directories currently installed.) 1098s Removing autopkgtest-satdep (0) ... 1099s autopkgtest [01:17:24]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 1099s autopkgtest [01:17:24]: test pkg-r-autopkgtest: [----------------------- 1099s Test: Try to load the R library stars 1099s 1099s R version 4.3.2 (2023-10-31) -- "Eye Holes" 1099s Copyright (C) 2023 The R Foundation for Statistical Computing 1099s Platform: x86_64-pc-linux-gnu (64-bit) 1099s 1099s R is free software and comes with ABSOLUTELY NO WARRANTY. 1099s You are welcome to redistribute it under certain conditions. 1099s Type 'license()' or 'licence()' for distribution details. 1099s 1099s R is a collaborative project with many contributors. 1099s Type 'contributors()' for more information and 1099s 'citation()' on how to cite R or R packages in publications. 1099s 1099s Type 'demo()' for some demos, 'help()' for on-line help, or 1099s 'help.start()' for an HTML browser interface to help. 1099s Type 'q()' to quit R. 1099s 1100s > library('stars') 1100s Loading required package: abind 1100s Loading required package: sf 1100s Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.3.1; sf_use_s2() is TRUE 1100s > 1100s > 1100s Other tests are currently unsupported! 1100s They will be progressively added. 1101s autopkgtest [01:17:26]: test pkg-r-autopkgtest: -----------------------] 1101s pkg-r-autopkgtest PASS 1101s autopkgtest [01:17:26]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1101s autopkgtest [01:17:26]: @@@@@@@@@@@@@@@@@@@@ summary 1101s run-unit-test PASS 1101s pkg-r-autopkgtest PASS 1111s Creating nova instance adt-noble-i386-r-cran-stars-20240324-005904-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240323.img (UUID 5df8a563-0957-4fdd-8453-862df650aaf8)... 1111s Creating nova instance adt-noble-i386-r-cran-stars-20240324-005904-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240323.img (UUID 5df8a563-0957-4fdd-8453-862df650aaf8)...