0s autopkgtest [20:53:25]: starting date and time: 2024-03-23 20:53:25+0000
  0s autopkgtest [20:53:25]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [20:53:25]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.irpg3zvk/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-cran-shazam --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-10.secgroup --name adt-noble-i386-r-cran-shazam-20240323-205325-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
707s autopkgtest [21:05:12]: testbed dpkg architecture: amd64
707s autopkgtest [21:05:12]: testbed apt version: 2.7.12
707s autopkgtest [21:05:12]: test architecture: i386
707s autopkgtest [21:05:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup
707s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
707s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB]
707s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
707s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3975 kB]
707s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB]
707s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [686 kB]
707s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [451 kB]
707s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B]
707s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B]
707s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB]
707s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B]
707s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4423 kB]
707s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1318 kB]
707s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B]
707s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [96.1 kB]
707s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [27.1 kB]
707s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B]
711s Fetched 11.7 MB in 2s (7302 kB/s)
711s Reading package lists...
713s Reading package lists...
713s Building dependency tree...
713s Reading state information...
714s Calculating upgrade...
714s The following packages will be upgraded:
714s   libc-bin libc6 locales
714s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
714s Need to get 8176 kB of archives.
714s After this operation, 2048 B of additional disk space will be used.
714s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc6 amd64 2.39-0ubuntu6 [3262 kB]
714s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libc-bin amd64 2.39-0ubuntu6 [682 kB]
714s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 locales all 2.39-0ubuntu6 [4232 kB]
715s Preconfiguring packages ...
715s Fetched 8176 kB in 0s (83.3 MB/s)
715s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71864 files and directories currently installed.)
715s Preparing to unpack .../libc6_2.39-0ubuntu6_amd64.deb ...
715s Unpacking libc6:amd64 (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
715s Setting up libc6:amd64 (2.39-0ubuntu6) ...
716s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71864 files and directories currently installed.)
716s Preparing to unpack .../libc-bin_2.39-0ubuntu6_amd64.deb ...
716s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
716s Setting up libc-bin (2.39-0ubuntu6) ...
716s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71864 files and directories currently installed.)
716s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ...
716s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
717s Setting up locales (2.39-0ubuntu6) ...
717s Generating locales (this might take a while)...
719s   en_US.UTF-8... done
719s Generation complete.
719s Processing triggers for man-db (2.12.0-3) ...
720s Reading package lists...
721s Building dependency tree...
721s Reading state information...
721s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
722s sh: Attempting to set up Debian/Ubuntu apt sources automatically
722s sh: Distribution appears to be Ubuntu
723s Reading package lists...
723s Building dependency tree...
723s Reading state information...
723s eatmydata is already the newest version (131-1).
723s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
723s Reading package lists...
724s Building dependency tree...
724s Reading state information...
724s dbus is already the newest version (1.14.10-4ubuntu1).
724s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
724s Reading package lists...
724s Building dependency tree...
724s Reading state information...
725s rng-tools-debian is already the newest version (2.4).
725s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
725s Reading package lists...
725s Building dependency tree...
725s Reading state information...
725s The following packages will be REMOVED:
725s   cloud-init* python3-configobj* python3-debconf*
726s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
726s After this operation, 3256 kB disk space will be freed.
726s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71864 files and directories currently installed.)
726s Removing cloud-init (24.1.2-0ubuntu1) ...
726s Removing python3-configobj (5.0.8-3) ...
726s Removing python3-debconf (1.5.86) ...
727s Processing triggers for man-db (2.12.0-3) ...
727s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71475 files and directories currently installed.)
727s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
728s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
728s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
728s invoke-rc.d: policy-rc.d denied execution of try-restart.
728s Reading package lists...
728s Building dependency tree...
728s Reading state information...
729s linux-generic is already the newest version (6.8.0-11.11+1).
729s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
729s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
729s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
729s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
731s Reading package lists...
731s Reading package lists...
731s Building dependency tree...
731s Reading state information...
732s Calculating upgrade...
732s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
732s Reading package lists...
732s Building dependency tree...
732s Reading state information...
733s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
733s autopkgtest [21:05:38]: rebooting testbed after setup commands that affected boot
754s autopkgtest [21:05:59]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024
756s autopkgtest [21:06:01]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-shazam
757s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-shazam 1.2.0-1 (dsc) [2383 B]
757s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-shazam 1.2.0-1 (tar) [1751 kB]
757s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-shazam 1.2.0-1 (diff) [8748 B]
757s gpgv: Signature made Tue Oct 17 12:32:54 2023 UTC
757s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
757s gpgv:                issuer "tille@debian.org"
757s gpgv: Can't check signature: No public key
757s dpkg-source: warning: cannot verify inline signature for ./r-cran-shazam_1.2.0-1.dsc: no acceptable signature found
758s autopkgtest [21:06:03]: testing package r-cran-shazam version 1.2.0-1
758s autopkgtest [21:06:03]: build not needed
760s autopkgtest [21:06:05]: test pkg-r-autopkgtest: preparing testbed
766s Note, using file '/tmp/autopkgtest.8NfX53/1-autopkgtest-satdep.dsc' to get the build dependencies
766s Reading package lists...
766s Building dependency tree...
766s Reading state information...
766s Starting pkgProblemResolver with broken count: 0
766s Starting 2 pkgProblemResolver with broken count: 0
766s Done
767s The following NEW packages will be installed:
767s   build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu
767s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
767s   fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13
767s   g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13
767s   gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13
767s   gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools
767s   javascript-common libasan8 libatomic1 libblas-dev libblas3 libboost-dev
767s   libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0
767s   libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
767s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
767s   libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
767s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
767s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
767s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
767s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
767s   libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker
767s   liblapack-dev liblapack3 liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3
767s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
767s   libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
767s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libquadmath0
767s   libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data
767s   libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0
767s   libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev littler
767s   node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data
767s   pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
767s   r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings
767s   r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata
767s   r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges
767s   r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4arrays
767s   r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment
767s   r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-ade4 r-cran-airr
767s   r-cran-alakazam r-cran-ape r-cran-base64enc r-cran-bh r-cran-bit
767s   r-cran-bit64 r-cran-bitops r-cran-brio r-cran-bslib r-cran-cachem
767s   r-cran-callr r-cran-cli r-cran-clipr r-cran-codetools r-cran-colorspace
767s   r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-desc r-cran-diffobj
767s   r-cran-digest r-cran-diptest r-cran-doparallel r-cran-dplyr r-cran-ellipsis
767s   r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome
767s   r-cran-foreach r-cran-formatr r-cran-fs r-cran-futile.logger
767s   r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue
767s   r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv
767s   r-cran-igraph r-cran-isoband r-cran-iterators r-cran-jquerylib
767s   r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling
767s   r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle
767s   r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats
767s   r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme
767s   r-cran-pillar r-cran-pixmap r-cran-pkgbuild r-cran-pkgconfig
767s   r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-prettyunits
767s   r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-purrr
767s   r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp
767s   r-cran-rcpparmadillo r-cran-rcurl r-cran-readr r-cran-rematch2 r-cran-rlang
767s   r-cran-rmarkdown r-cran-rprojroot r-cran-sass r-cran-scales r-cran-segmented
767s   r-cran-seqinr r-cran-shazam r-cran-shiny r-cran-snow r-cran-sourcetools
767s   r-cran-sp r-cran-stringi r-cran-stringr r-cran-testthat r-cran-tibble
767s   r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8
767s   r-cran-vctrs r-cran-viridislite r-cran-vroom r-cran-waldo r-cran-withr
767s   r-cran-xfun r-cran-xtable r-cran-yaml rpcsvc-proto unzip x11-common
767s   xdg-utils zip zlib1g-dev
767s 0 upgraded, 272 newly installed, 0 to remove and 0 not upgraded.
767s Need to get 334 MB of archives.
767s After this operation, 1118 MB of additional disk space will be used.
767s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu6 [20.4 kB]
767s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB]
767s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB]
767s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB]
767s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu6 [2126 kB]
767s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB]
767s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB]
767s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB]
767s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B]
767s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
767s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
767s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB]
767s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB]
767s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB]
767s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB]
767s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB]
767s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB]
767s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB]
767s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB]
767s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB]
767s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB]
767s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB]
768s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB]
768s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB]
768s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
768s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
768s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB]
768s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB]
768s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB]
768s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
768s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
768s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
768s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB]
768s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
768s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
768s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB]
768s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB]
768s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB]
768s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
768s Get:40 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
768s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
768s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB]
768s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB]
768s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB]
768s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB]
768s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B]
768s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B]
768s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB]
768s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B]
768s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB]
768s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB]
768s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB]
768s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B]
768s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB]
768s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB]
768s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB]
768s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B]
768s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB]
768s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB]
768s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB]
768s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB]
768s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB]
768s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB]
768s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
768s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB]
768s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB]
768s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB]
768s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB]
768s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
768s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
768s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
768s Get:72 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
768s Get:73 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
768s Get:74 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
768s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB]
768s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
768s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
768s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
768s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
768s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
768s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
768s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
768s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
768s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
768s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
768s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB]
768s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB]
768s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB]
768s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB]
768s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB]
768s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB]
768s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB]
768s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB]
768s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB]
768s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB]
768s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB]
768s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B]
768s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB]
768s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB]
768s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B]
768s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB]
768s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB]
768s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB]
768s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB]
768s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB]
768s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB]
768s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB]
768s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB]
768s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB]
768s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB]
768s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB]
768s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB]
768s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B]
768s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.14-1 [779 kB]
768s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB]
768s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB]
768s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB]
768s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
768s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB]
769s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB]
769s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B]
769s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
769s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
769s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB]
769s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB]
769s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB]
769s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB]
769s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB]
769s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B]
769s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB]
769s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B]
769s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
769s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
769s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB]
769s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB]
769s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB]
769s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
769s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
769s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB]
769s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB]
769s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B]
769s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB]
769s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB]
769s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB]
769s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB]
769s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
769s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB]
769s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB]
769s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB]
769s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
769s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
769s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB]
769s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB]
769s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB]
769s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB]
769s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB]
769s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB]
769s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB]
769s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB]
770s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB]
770s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB]
770s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB]
770s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB]
770s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB]
770s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB]
770s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB]
770s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB]
770s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pixmap all 0.4-12-1 [201 kB]
770s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sp amd64 1:2.1-2+dfsg-1 [1447 kB]
770s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
770s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB]
770s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpparmadillo amd64 0.12.8.0.0-1 [862 kB]
770s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ade4 amd64 1.7-22-1 [5333 kB]
770s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB]
770s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB]
770s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-clipr all 0.8.0-1 [53.5 kB]
770s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB]
770s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB]
770s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
770s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
770s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
770s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB]
770s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB]
770s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB]
770s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
770s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
770s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
770s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB]
770s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB]
770s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB]
770s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB]
770s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB]
770s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB]
770s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB]
770s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB]
770s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vroom amd64 1.6.5-1 [848 kB]
770s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-readr amd64 2.1.5-1 [766 kB]
770s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB]
770s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB]
770s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-airr all 1.5.0+dfsg-1 [329 kB]
770s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB]
770s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
770s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB]
770s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB]
770s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB]
770s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
770s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB]
770s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB]
770s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
770s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB]
770s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB]
770s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB]
770s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB]
770s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ape amd64 5.7-1-1 [2892 kB]
770s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB]
770s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB]
770s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-igraph amd64 1.6.0-1 [4399 kB]
770s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-segmented all 2.0-3-1 [1252 kB]
770s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-seqinr amd64 4.2-36-1 [4015 kB]
770s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB]
770s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB]
770s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB]
770s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-alakazam amd64 1.3.0-1 [2410 kB]
770s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB]
770s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB]
770s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB]
770s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB]
770s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB]
770s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB]
770s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
770s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB]
770s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB]
770s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB]
770s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB]
770s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB]
770s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB]
770s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB]
770s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB]
770s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB]
770s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB]
770s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB]
770s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB]
770s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diptest amd64 0.77-0-1 [189 kB]
770s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-iterators all 1.0.14-1 [336 kB]
770s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-foreach all 1.5.2-1 [124 kB]
770s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-doparallel all 1.0.17-1 [189 kB]
770s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB]
770s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB]
771s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB]
771s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB]
771s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB]
771s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB]
771s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB]
771s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-kernsmooth amd64 2.23-22-1 [91.7 kB]
771s Get:255 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
771s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB]
771s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB]
771s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB]
771s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB]
771s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB]
771s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
771s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB]
771s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB]
771s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB]
771s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB]
771s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
771s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
771s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB]
771s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB]
771s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shazam all 1.2.0-1 [2184 kB]
771s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB]
771s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB]
771s Preconfiguring packages ...
771s Fetched 334 MB in 4s (91.9 MB/s)
771s Selecting previously unselected package libc-dev-bin.
772s (Reading database ... 
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(Reading database ... 71420 files and directories currently installed.)
772s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu6_amd64.deb ...
772s Unpacking libc-dev-bin (2.39-0ubuntu6) ...
772s Selecting previously unselected package linux-libc-dev:amd64.
772s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ...
772s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ...
772s Selecting previously unselected package libcrypt-dev:amd64.
772s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ...
772s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ...
772s Selecting previously unselected package rpcsvc-proto.
772s Preparing to unpack .../003-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ...
772s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
772s Selecting previously unselected package libc6-dev:amd64.
772s Preparing to unpack .../004-libc6-dev_2.39-0ubuntu6_amd64.deb ...
772s Unpacking libc6-dev:amd64 (2.39-0ubuntu6) ...
772s Selecting previously unselected package libisl23:amd64.
772s Preparing to unpack .../005-libisl23_0.26-3_amd64.deb ...
772s Unpacking libisl23:amd64 (0.26-3) ...
772s Selecting previously unselected package libmpc3:amd64.
772s Preparing to unpack .../006-libmpc3_1.3.1-1_amd64.deb ...
772s Unpacking libmpc3:amd64 (1.3.1-1) ...
772s Selecting previously unselected package cpp-13-x86-64-linux-gnu.
772s Preparing to unpack .../007-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
772s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
772s Selecting previously unselected package cpp-13.
772s Preparing to unpack .../008-cpp-13_13.2.0-17ubuntu2_amd64.deb ...
772s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
772s Selecting previously unselected package cpp-x86-64-linux-gnu.
772s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
772s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
772s Selecting previously unselected package cpp.
772s Preparing to unpack .../010-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ...
772s Unpacking cpp (4:13.2.0-7ubuntu1) ...
772s Selecting previously unselected package libcc1-0:amd64.
772s Preparing to unpack .../011-libcc1-0_14-20240303-1ubuntu1_amd64.deb ...
772s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ...
772s Selecting previously unselected package libgomp1:amd64.
772s Preparing to unpack .../012-libgomp1_14-20240303-1ubuntu1_amd64.deb ...
772s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ...
772s Selecting previously unselected package libitm1:amd64.
772s Preparing to unpack .../013-libitm1_14-20240303-1ubuntu1_amd64.deb ...
772s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ...
772s Selecting previously unselected package libatomic1:amd64.
772s Preparing to unpack .../014-libatomic1_14-20240303-1ubuntu1_amd64.deb ...
772s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ...
772s Selecting previously unselected package libasan8:amd64.
772s Preparing to unpack .../015-libasan8_14-20240303-1ubuntu1_amd64.deb ...
772s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ...
773s Selecting previously unselected package liblsan0:amd64.
773s Preparing to unpack .../016-liblsan0_14-20240303-1ubuntu1_amd64.deb ...
773s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ...
773s Selecting previously unselected package libtsan2:amd64.
773s Preparing to unpack .../017-libtsan2_14-20240303-1ubuntu1_amd64.deb ...
773s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ...
773s Selecting previously unselected package libubsan1:amd64.
773s Preparing to unpack .../018-libubsan1_14-20240303-1ubuntu1_amd64.deb ...
773s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ...
773s Selecting previously unselected package libhwasan0:amd64.
773s Preparing to unpack .../019-libhwasan0_14-20240303-1ubuntu1_amd64.deb ...
773s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ...
773s Selecting previously unselected package libquadmath0:amd64.
773s Preparing to unpack .../020-libquadmath0_14-20240303-1ubuntu1_amd64.deb ...
773s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ...
773s Selecting previously unselected package libgcc-13-dev:amd64.
773s Preparing to unpack .../021-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ...
773s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
773s Selecting previously unselected package gcc-13-x86-64-linux-gnu.
773s Preparing to unpack .../022-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
773s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
773s Selecting previously unselected package gcc-13.
773s Preparing to unpack .../023-gcc-13_13.2.0-17ubuntu2_amd64.deb ...
773s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
773s Selecting previously unselected package gcc-x86-64-linux-gnu.
773s Preparing to unpack .../024-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
773s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
773s Selecting previously unselected package gcc.
773s Preparing to unpack .../025-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ...
773s Unpacking gcc (4:13.2.0-7ubuntu1) ...
773s Selecting previously unselected package libstdc++-13-dev:amd64.
773s Preparing to unpack .../026-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ...
773s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
774s Selecting previously unselected package g++-13-x86-64-linux-gnu.
774s Preparing to unpack .../027-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
774s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
774s Selecting previously unselected package g++-13.
774s Preparing to unpack .../028-g++-13_13.2.0-17ubuntu2_amd64.deb ...
774s Unpacking g++-13 (13.2.0-17ubuntu2) ...
774s Selecting previously unselected package g++-x86-64-linux-gnu.
774s Preparing to unpack .../029-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
774s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
774s Selecting previously unselected package g++.
774s Preparing to unpack .../030-g++_4%3a13.2.0-7ubuntu1_amd64.deb ...
774s Unpacking g++ (4:13.2.0-7ubuntu1) ...
774s Selecting previously unselected package build-essential.
774s Preparing to unpack .../031-build-essential_12.10ubuntu1_amd64.deb ...
774s Unpacking build-essential (12.10ubuntu1) ...
774s Selecting previously unselected package dctrl-tools.
774s Preparing to unpack .../032-dctrl-tools_2.24-3build2_amd64.deb ...
774s Unpacking dctrl-tools (2.24-3build2) ...
774s Selecting previously unselected package fonts-dejavu-mono.
774s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8_all.deb ...
774s Unpacking fonts-dejavu-mono (2.37-8) ...
774s Selecting previously unselected package fonts-dejavu-core.
774s Preparing to unpack .../034-fonts-dejavu-core_2.37-8_all.deb ...
774s Unpacking fonts-dejavu-core (2.37-8) ...
774s Selecting previously unselected package fontconfig-config.
774s Preparing to unpack .../035-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ...
774s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
774s Selecting previously unselected package libfontconfig1:amd64.
774s Preparing to unpack .../036-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ...
774s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
774s Selecting previously unselected package fontconfig.
774s Preparing to unpack .../037-fontconfig_2.15.0-1ubuntu1_amd64.deb ...
774s Unpacking fontconfig (2.15.0-1ubuntu1) ...
774s Selecting previously unselected package fonts-font-awesome.
774s Preparing to unpack .../038-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
774s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
774s Selecting previously unselected package fonts-glyphicons-halflings.
774s Preparing to unpack .../039-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
774s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
774s Selecting previously unselected package fonts-mathjax.
774s Preparing to unpack .../040-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
774s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
775s Selecting previously unselected package libgfortran5:amd64.
775s Preparing to unpack .../041-libgfortran5_14-20240303-1ubuntu1_amd64.deb ...
775s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ...
775s Selecting previously unselected package libgfortran-13-dev:amd64.
775s Preparing to unpack .../042-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ...
775s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ...
775s Selecting previously unselected package gfortran-13-x86-64-linux-gnu.
775s Preparing to unpack .../043-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
775s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
775s Selecting previously unselected package gfortran-13.
775s Preparing to unpack .../044-gfortran-13_13.2.0-17ubuntu2_amd64.deb ...
775s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
775s Selecting previously unselected package gfortran-x86-64-linux-gnu.
775s Preparing to unpack .../045-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
775s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
775s Selecting previously unselected package gfortran.
775s Preparing to unpack .../046-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ...
775s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
775s Selecting previously unselected package icu-devtools.
775s Preparing to unpack .../047-icu-devtools_74.2-1ubuntu1_amd64.deb ...
775s Unpacking icu-devtools (74.2-1ubuntu1) ...
775s Selecting previously unselected package javascript-common.
775s Preparing to unpack .../048-javascript-common_11+nmu1_all.deb ...
775s Unpacking javascript-common (11+nmu1) ...
775s Selecting previously unselected package libblas3:amd64.
775s Preparing to unpack .../049-libblas3_3.12.0-3_amd64.deb ...
775s Unpacking libblas3:amd64 (3.12.0-3) ...
775s Selecting previously unselected package libblas-dev:amd64.
775s Preparing to unpack .../050-libblas-dev_3.12.0-3_amd64.deb ...
775s Unpacking libblas-dev:amd64 (3.12.0-3) ...
775s Selecting previously unselected package libboost1.83-dev:amd64.
775s Preparing to unpack .../051-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ...
775s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ...
778s Selecting previously unselected package libboost-dev:amd64.
778s Preparing to unpack .../052-libboost-dev_1.83.0.1ubuntu2_amd64.deb ...
778s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ...
778s Selecting previously unselected package libbz2-dev:amd64.
778s Preparing to unpack .../053-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ...
778s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ...
778s Selecting previously unselected package libpixman-1-0:amd64.
778s Preparing to unpack .../054-libpixman-1-0_0.42.2-1_amd64.deb ...
778s Unpacking libpixman-1-0:amd64 (0.42.2-1) ...
778s Selecting previously unselected package libxcb-render0:amd64.
778s Preparing to unpack .../055-libxcb-render0_1.15-1_amd64.deb ...
778s Unpacking libxcb-render0:amd64 (1.15-1) ...
778s Selecting previously unselected package libxcb-shm0:amd64.
778s Preparing to unpack .../056-libxcb-shm0_1.15-1_amd64.deb ...
778s Unpacking libxcb-shm0:amd64 (1.15-1) ...
778s Selecting previously unselected package libxrender1:amd64.
778s Preparing to unpack .../057-libxrender1_1%3a0.9.10-1.1_amd64.deb ...
778s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ...
778s Selecting previously unselected package libcairo2:amd64.
778s Preparing to unpack .../058-libcairo2_1.18.0-1_amd64.deb ...
778s Unpacking libcairo2:amd64 (1.18.0-1) ...
778s Selecting previously unselected package libdatrie1:amd64.
778s Preparing to unpack .../059-libdatrie1_0.2.13-3_amd64.deb ...
778s Unpacking libdatrie1:amd64 (0.2.13-3) ...
778s Selecting previously unselected package libdeflate0:amd64.
778s Preparing to unpack .../060-libdeflate0_1.19-1_amd64.deb ...
778s Unpacking libdeflate0:amd64 (1.19-1) ...
778s Selecting previously unselected package libgraphite2-3:amd64.
778s Preparing to unpack .../061-libgraphite2-3_1.3.14-2_amd64.deb ...
778s Unpacking libgraphite2-3:amd64 (1.3.14-2) ...
778s Selecting previously unselected package libharfbuzz0b:amd64.
778s Preparing to unpack .../062-libharfbuzz0b_8.3.0-2_amd64.deb ...
778s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ...
778s Selecting previously unselected package x11-common.
778s Preparing to unpack .../063-x11-common_1%3a7.7+23ubuntu2_all.deb ...
778s Unpacking x11-common (1:7.7+23ubuntu2) ...
778s Selecting previously unselected package libice6:amd64.
778s Preparing to unpack .../064-libice6_2%3a1.0.10-1build2_amd64.deb ...
778s Unpacking libice6:amd64 (2:1.0.10-1build2) ...
778s Selecting previously unselected package libicu-dev:amd64.
778s Preparing to unpack .../065-libicu-dev_74.2-1ubuntu1_amd64.deb ...
778s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ...
778s Selecting previously unselected package libjpeg-turbo8:amd64.
778s Preparing to unpack .../066-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ...
778s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ...
778s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
778s Preparing to unpack .../067-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ...
778s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ...
778s Selecting previously unselected package libjpeg8:amd64.
778s Preparing to unpack .../068-libjpeg8_8c-2ubuntu11_amd64.deb ...
778s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
778s Selecting previously unselected package libjpeg8-dev:amd64.
779s Preparing to unpack .../069-libjpeg8-dev_8c-2ubuntu11_amd64.deb ...
779s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ...
779s Selecting previously unselected package libjpeg-dev:amd64.
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780s Selecting previously unselected package libpango-1.0-0:amd64.
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780s Selecting previously unselected package libpangoft2-1.0-0:amd64.
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780s Selecting previously unselected package libpangocairo-1.0-0:amd64.
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780s Selecting previously unselected package libpaper1:amd64.
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780s Selecting previously unselected package libpkgconf3:amd64.
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780s Selecting previously unselected package zlib1g-dev:amd64.
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780s Selecting previously unselected package libpng-dev:amd64.
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780s Selecting previously unselected package libreadline-dev:amd64.
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780s Selecting previously unselected package libsharpyuv0:amd64.
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780s Selecting previously unselected package libsm6:amd64.
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780s Selecting previously unselected package libtcl8.6:amd64.
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780s Selecting previously unselected package libjbig0:amd64.
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780s Selecting previously unselected package libwebp7:amd64.
780s Preparing to unpack .../109-libwebp7_1.3.2-0.4_amd64.deb ...
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780s Selecting previously unselected package libtiff6:amd64.
780s Preparing to unpack .../110-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ...
780s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ...
780s Selecting previously unselected package libxft2:amd64.
780s Preparing to unpack .../111-libxft2_2.3.6-1_amd64.deb ...
780s Unpacking libxft2:amd64 (2.3.6-1) ...
780s Selecting previously unselected package libxss1:amd64.
780s Preparing to unpack .../112-libxss1_1%3a1.2.3-1build2_amd64.deb ...
780s Unpacking libxss1:amd64 (1:1.2.3-1build2) ...
780s Selecting previously unselected package libtk8.6:amd64.
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780s Unpacking libtk8.6:amd64 (8.6.14-1) ...
781s Selecting previously unselected package libxt6:amd64.
781s Preparing to unpack .../114-libxt6_1%3a1.2.1-1.1_amd64.deb ...
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781s Selecting previously unselected package zip.
781s Preparing to unpack .../115-zip_3.0-13_amd64.deb ...
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781s Selecting previously unselected package unzip.
781s Preparing to unpack .../116-unzip_6.0-28ubuntu3_amd64.deb ...
781s Unpacking unzip (6.0-28ubuntu3) ...
781s Selecting previously unselected package xdg-utils.
781s Preparing to unpack .../117-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
781s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
781s Selecting previously unselected package r-base-core.
781s Preparing to unpack .../118-r-base-core_4.3.2-1build1_amd64.deb ...
781s Unpacking r-base-core (4.3.2-1build1) ...
781s Selecting previously unselected package r-cran-littler.
781s Preparing to unpack .../119-r-cran-littler_0.3.19-1_amd64.deb ...
781s Unpacking r-cran-littler (0.3.19-1) ...
781s Selecting previously unselected package littler.
781s Preparing to unpack .../120-littler_0.3.19-1_all.deb ...
781s Unpacking littler (0.3.19-1) ...
781s Selecting previously unselected package node-bootstrap-sass.
781s Preparing to unpack .../121-node-bootstrap-sass_3.4.3-2_all.deb ...
781s Unpacking node-bootstrap-sass (3.4.3-2) ...
781s Selecting previously unselected package node-html5shiv.
781s Preparing to unpack .../122-node-html5shiv_3.7.3+dfsg-5_all.deb ...
781s Unpacking node-html5shiv (3.7.3+dfsg-5) ...
781s Selecting previously unselected package node-normalize.css.
781s Preparing to unpack .../123-node-normalize.css_8.0.1-5_all.deb ...
781s Unpacking node-normalize.css (8.0.1-5) ...
781s Selecting previously unselected package pandoc-data.
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781s Unpacking pandoc-data (3.1.3-1) ...
781s Selecting previously unselected package pandoc.
781s Preparing to unpack .../125-pandoc_3.1.3+ds-2_amd64.deb ...
781s Unpacking pandoc (3.1.3+ds-2) ...
782s Selecting previously unselected package pkgconf-bin.
782s Preparing to unpack .../126-pkgconf-bin_1.8.1-2_amd64.deb ...
782s Unpacking pkgconf-bin (1.8.1-2) ...
782s Selecting previously unselected package pkgconf:amd64.
782s Preparing to unpack .../127-pkgconf_1.8.1-2_amd64.deb ...
782s Unpacking pkgconf:amd64 (1.8.1-2) ...
782s Selecting previously unselected package pkg-config:amd64.
782s Preparing to unpack .../128-pkg-config_1.8.1-2_amd64.deb ...
782s Unpacking pkg-config:amd64 (1.8.1-2) ...
782s Selecting previously unselected package liblzma-dev:amd64.
782s Preparing to unpack .../129-liblzma-dev_5.4.5-0.3_amd64.deb ...
782s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ...
782s Selecting previously unselected package r-base-dev.
782s Preparing to unpack .../130-r-base-dev_4.3.2-1build1_all.deb ...
782s Unpacking r-base-dev (4.3.2-1build1) ...
782s Selecting previously unselected package pkg-r-autopkgtest.
782s Preparing to unpack .../131-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
782s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
782s Selecting previously unselected package r-bioc-biocgenerics.
782s Preparing to unpack .../132-r-bioc-biocgenerics_0.48.1-2_all.deb ...
782s Unpacking r-bioc-biocgenerics (0.48.1-2) ...
782s Selecting previously unselected package r-bioc-biobase.
782s Preparing to unpack .../133-r-bioc-biobase_2.62.0-1_amd64.deb ...
782s Unpacking r-bioc-biobase (2.62.0-1) ...
782s Selecting previously unselected package r-cran-formatr.
783s Preparing to unpack .../134-r-cran-formatr_1.14-1_all.deb ...
783s Unpacking r-cran-formatr (1.14-1) ...
783s Selecting previously unselected package r-cran-lambda.r.
783s Preparing to unpack .../135-r-cran-lambda.r_1.2.4-2build1_all.deb ...
783s Unpacking r-cran-lambda.r (1.2.4-2build1) ...
783s Selecting previously unselected package r-cran-futile.options.
783s Preparing to unpack .../136-r-cran-futile.options_1.0.1-3build1_all.deb ...
783s Unpacking r-cran-futile.options (1.0.1-3build1) ...
783s Selecting previously unselected package r-cran-futile.logger.
783s Preparing to unpack .../137-r-cran-futile.logger_1.4.3-4build1_all.deb ...
783s Unpacking r-cran-futile.logger (1.4.3-4build1) ...
783s Selecting previously unselected package r-cran-snow.
783s Preparing to unpack .../138-r-cran-snow_1%3a0.4.4-2_all.deb ...
783s Unpacking r-cran-snow (1:0.4.4-2) ...
783s Selecting previously unselected package r-cran-codetools.
783s Preparing to unpack .../139-r-cran-codetools_0.2-19-1_all.deb ...
783s Unpacking r-cran-codetools (0.2-19-1) ...
783s Selecting previously unselected package r-cran-bh.
783s Preparing to unpack .../140-r-cran-bh_1.84.0-1_all.deb ...
783s Unpacking r-cran-bh (1.84.0-1) ...
783s Selecting previously unselected package r-cran-cpp11.
783s Preparing to unpack .../141-r-cran-cpp11_0.4.7-1_all.deb ...
783s Unpacking r-cran-cpp11 (0.4.7-1) ...
783s Selecting previously unselected package r-bioc-biocparallel.
783s Preparing to unpack .../142-r-bioc-biocparallel_1.36.0-1_amd64.deb ...
783s Unpacking r-bioc-biocparallel (1.36.0-1) ...
783s Selecting previously unselected package r-bioc-s4vectors.
783s Preparing to unpack .../143-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ...
783s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ...
783s Selecting previously unselected package r-bioc-iranges.
783s Preparing to unpack .../144-r-bioc-iranges_2.36.0-1_amd64.deb ...
783s Unpacking r-bioc-iranges (2.36.0-1) ...
783s Selecting previously unselected package r-bioc-zlibbioc.
783s Preparing to unpack .../145-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ...
783s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ...
783s Selecting previously unselected package r-bioc-xvector.
783s Preparing to unpack .../146-r-bioc-xvector_0.42.0-1_amd64.deb ...
783s Unpacking r-bioc-xvector (0.42.0-1) ...
783s Selecting previously unselected package r-cran-bitops.
783s Preparing to unpack .../147-r-cran-bitops_1.0-7-1_amd64.deb ...
783s Unpacking r-cran-bitops (1.0-7-1) ...
783s Selecting previously unselected package r-cran-rcurl.
783s Preparing to unpack .../148-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ...
783s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ...
783s Selecting previously unselected package r-bioc-genomeinfodbdata.
783s Preparing to unpack .../149-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ...
783s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ...
783s Selecting previously unselected package r-bioc-genomeinfodb.
783s Preparing to unpack .../150-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ...
783s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
783s Selecting previously unselected package r-cran-crayon.
783s Preparing to unpack .../151-r-cran-crayon_1.5.2-1_all.deb ...
783s Unpacking r-cran-crayon (1.5.2-1) ...
783s Selecting previously unselected package r-bioc-biostrings.
783s Preparing to unpack .../152-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ...
783s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ...
783s Selecting previously unselected package r-cran-lattice.
783s Preparing to unpack .../153-r-cran-lattice_0.22-5-1_amd64.deb ...
783s Unpacking r-cran-lattice (0.22-5-1) ...
783s Selecting previously unselected package r-cran-matrix.
783s Preparing to unpack .../154-r-cran-matrix_1.6-5-1_amd64.deb ...
783s Unpacking r-cran-matrix (1.6-5-1) ...
784s Selecting previously unselected package r-cran-matrixstats.
784s Preparing to unpack .../155-r-cran-matrixstats_1.2.0-1_amd64.deb ...
784s Unpacking r-cran-matrixstats (1.2.0-1) ...
784s Selecting previously unselected package r-bioc-matrixgenerics.
784s Preparing to unpack .../156-r-bioc-matrixgenerics_1.14.0-1_all.deb ...
784s Unpacking r-bioc-matrixgenerics (1.14.0-1) ...
784s Selecting previously unselected package r-cran-abind.
784s Preparing to unpack .../157-r-cran-abind_1.4-5-2_all.deb ...
784s Unpacking r-cran-abind (1.4-5-2) ...
784s Selecting previously unselected package r-bioc-s4arrays.
784s Preparing to unpack .../158-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ...
784s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ...
784s Selecting previously unselected package r-bioc-sparsearray.
784s Preparing to unpack .../159-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ...
784s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ...
784s Selecting previously unselected package r-bioc-delayedarray.
784s Preparing to unpack .../160-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ...
784s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ...
784s Selecting previously unselected package r-bioc-genomicranges.
784s Preparing to unpack .../161-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ...
784s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ...
784s Selecting previously unselected package r-bioc-summarizedexperiment.
784s Preparing to unpack .../162-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ...
784s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
784s Selecting previously unselected package r-bioc-rhtslib.
784s Preparing to unpack .../163-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ...
784s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ...
784s Selecting previously unselected package r-bioc-rsamtools.
784s Preparing to unpack .../164-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ...
784s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ...
784s Selecting previously unselected package r-bioc-genomicalignments.
784s Preparing to unpack .../165-r-bioc-genomicalignments_1.38.2-1_amd64.deb ...
784s Unpacking r-bioc-genomicalignments (1.38.2-1) ...
784s Selecting previously unselected package r-cran-mass.
784s Preparing to unpack .../166-r-cran-mass_7.3-60.0.1-1_amd64.deb ...
784s Unpacking r-cran-mass (7.3-60.0.1-1) ...
784s Selecting previously unselected package r-cran-pixmap.
784s Preparing to unpack .../167-r-cran-pixmap_0.4-12-1_all.deb ...
784s Unpacking r-cran-pixmap (0.4-12-1) ...
784s Selecting previously unselected package r-cran-sp.
784s Preparing to unpack .../168-r-cran-sp_1%3a2.1-2+dfsg-1_amd64.deb ...
784s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ...
784s Selecting previously unselected package r-cran-pkgkitten.
784s Preparing to unpack .../169-r-cran-pkgkitten_0.2.3-1_all.deb ...
784s Unpacking r-cran-pkgkitten (0.2.3-1) ...
784s Selecting previously unselected package r-cran-rcpp.
784s Preparing to unpack .../170-r-cran-rcpp_1.0.12-1_amd64.deb ...
784s Unpacking r-cran-rcpp (1.0.12-1) ...
784s Selecting previously unselected package r-cran-rcpparmadillo.
784s Preparing to unpack .../171-r-cran-rcpparmadillo_0.12.8.0.0-1_amd64.deb ...
784s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ...
785s Selecting previously unselected package r-cran-ade4.
785s Preparing to unpack .../172-r-cran-ade4_1.7-22-1_amd64.deb ...
785s Unpacking r-cran-ade4 (1.7-22-1) ...
785s Selecting previously unselected package r-cran-jsonlite.
785s Preparing to unpack .../173-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ...
785s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ...
785s Selecting previously unselected package r-cran-cli.
785s Preparing to unpack .../174-r-cran-cli_3.6.2-1_amd64.deb ...
785s Unpacking r-cran-cli (3.6.2-1) ...
785s Selecting previously unselected package r-cran-clipr.
785s Preparing to unpack .../175-r-cran-clipr_0.8.0-1_all.deb ...
785s Unpacking r-cran-clipr (0.8.0-1) ...
785s Selecting previously unselected package r-cran-glue.
785s Preparing to unpack .../176-r-cran-glue_1.7.0-1_amd64.deb ...
785s Unpacking r-cran-glue (1.7.0-1) ...
785s Selecting previously unselected package r-cran-rlang.
785s Preparing to unpack .../177-r-cran-rlang_1.1.3-1_amd64.deb ...
785s Unpacking r-cran-rlang (1.1.3-1) ...
785s Selecting previously unselected package r-cran-lifecycle.
785s Preparing to unpack .../178-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
785s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
785s Selecting previously unselected package r-cran-pkgconfig.
785s Preparing to unpack .../179-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
785s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
785s Selecting previously unselected package r-cran-vctrs.
785s Preparing to unpack .../180-r-cran-vctrs_0.6.5-1_amd64.deb ...
785s Unpacking r-cran-vctrs (0.6.5-1) ...
785s Selecting previously unselected package r-cran-hms.
785s Preparing to unpack .../181-r-cran-hms_1.1.3-1_all.deb ...
785s Unpacking r-cran-hms (1.1.3-1) ...
785s Selecting previously unselected package r-cran-r6.
785s Preparing to unpack .../182-r-cran-r6_2.5.1-1_all.deb ...
785s Unpacking r-cran-r6 (2.5.1-1) ...
785s Selecting previously unselected package r-cran-fansi.
785s Preparing to unpack .../183-r-cran-fansi_1.0.5-1_amd64.deb ...
785s Unpacking r-cran-fansi (1.0.5-1) ...
785s Selecting previously unselected package r-cran-magrittr.
785s Preparing to unpack .../184-r-cran-magrittr_2.0.3-1_amd64.deb ...
785s Unpacking r-cran-magrittr (2.0.3-1) ...
785s Selecting previously unselected package r-cran-utf8.
785s Preparing to unpack .../185-r-cran-utf8_1.2.4-1_amd64.deb ...
785s Unpacking r-cran-utf8 (1.2.4-1) ...
785s Selecting previously unselected package r-cran-pillar.
785s Preparing to unpack .../186-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
785s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
785s Selecting previously unselected package r-cran-tibble.
785s Preparing to unpack .../187-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ...
785s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
785s Selecting previously unselected package r-cran-bit.
785s Preparing to unpack .../188-r-cran-bit_4.0.5-1_amd64.deb ...
785s Unpacking r-cran-bit (4.0.5-1) ...
785s Selecting previously unselected package r-cran-bit64.
785s Preparing to unpack .../189-r-cran-bit64_4.0.5-1_amd64.deb ...
785s Unpacking r-cran-bit64 (4.0.5-1) ...
785s Selecting previously unselected package r-cran-withr.
785s Preparing to unpack .../190-r-cran-withr_2.5.0-1_all.deb ...
785s Unpacking r-cran-withr (2.5.0-1) ...
785s Selecting previously unselected package r-cran-tidyselect.
785s Preparing to unpack .../191-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ...
785s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ...
785s Selecting previously unselected package r-cran-tzdb.
786s Preparing to unpack .../192-r-cran-tzdb_0.4.0-2_amd64.deb ...
786s Unpacking r-cran-tzdb (0.4.0-2) ...
786s Selecting previously unselected package r-cran-prettyunits.
786s Preparing to unpack .../193-r-cran-prettyunits_1.2.0-1_all.deb ...
786s Unpacking r-cran-prettyunits (1.2.0-1) ...
786s Selecting previously unselected package r-cran-progress.
786s Preparing to unpack .../194-r-cran-progress_1.2.3-1_all.deb ...
786s Unpacking r-cran-progress (1.2.3-1) ...
786s Selecting previously unselected package r-cran-vroom.
786s Preparing to unpack .../195-r-cran-vroom_1.6.5-1_amd64.deb ...
786s Unpacking r-cran-vroom (1.6.5-1) ...
786s Selecting previously unselected package r-cran-readr.
786s Preparing to unpack .../196-r-cran-readr_2.1.5-1_amd64.deb ...
786s Unpacking r-cran-readr (2.1.5-1) ...
786s Selecting previously unselected package r-cran-stringi.
786s Preparing to unpack .../197-r-cran-stringi_1.8.3-1_amd64.deb ...
786s Unpacking r-cran-stringi (1.8.3-1) ...
786s Selecting previously unselected package r-cran-yaml.
786s Preparing to unpack .../198-r-cran-yaml_2.3.8-1_amd64.deb ...
786s Unpacking r-cran-yaml (2.3.8-1) ...
786s Selecting previously unselected package r-cran-airr.
786s Preparing to unpack .../199-r-cran-airr_1.5.0+dfsg-1_all.deb ...
786s Unpacking r-cran-airr (1.5.0+dfsg-1) ...
786s Selecting previously unselected package r-cran-gtable.
786s Preparing to unpack .../200-r-cran-gtable_0.3.4+dfsg-1_all.deb ...
786s Unpacking r-cran-gtable (0.3.4+dfsg-1) ...
786s Selecting previously unselected package r-cran-isoband.
786s Preparing to unpack .../201-r-cran-isoband_0.2.7-1_amd64.deb ...
786s Unpacking r-cran-isoband (0.2.7-1) ...
786s Selecting previously unselected package r-cran-nlme.
786s Preparing to unpack .../202-r-cran-nlme_3.1.164-1_amd64.deb ...
786s Unpacking r-cran-nlme (3.1.164-1) ...
786s Selecting previously unselected package r-cran-mgcv.
786s Preparing to unpack .../203-r-cran-mgcv_1.9-1-1_amd64.deb ...
786s Unpacking r-cran-mgcv (1.9-1-1) ...
786s Selecting previously unselected package r-cran-farver.
786s Preparing to unpack .../204-r-cran-farver_2.1.1-1_amd64.deb ...
786s Unpacking r-cran-farver (2.1.1-1) ...
786s Selecting previously unselected package r-cran-labeling.
786s Preparing to unpack .../205-r-cran-labeling_0.4.3-1_all.deb ...
786s Unpacking r-cran-labeling (0.4.3-1) ...
786s Selecting previously unselected package r-cran-colorspace.
786s Preparing to unpack .../206-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ...
786s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ...
786s Selecting previously unselected package r-cran-munsell.
786s Preparing to unpack .../207-r-cran-munsell_0.5.0-2build1_all.deb ...
786s Unpacking r-cran-munsell (0.5.0-2build1) ...
786s Selecting previously unselected package r-cran-rcolorbrewer.
786s Preparing to unpack .../208-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
786s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
786s Selecting previously unselected package r-cran-viridislite.
786s Preparing to unpack .../209-r-cran-viridislite_0.4.2-2_all.deb ...
786s Unpacking r-cran-viridislite (0.4.2-2) ...
786s Selecting previously unselected package r-cran-scales.
786s Preparing to unpack .../210-r-cran-scales_1.3.0-1_all.deb ...
786s Unpacking r-cran-scales (1.3.0-1) ...
786s Selecting previously unselected package r-cran-ggplot2.
786s Preparing to unpack .../211-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ...
786s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ...
786s Selecting previously unselected package r-cran-digest.
787s Preparing to unpack .../212-r-cran-digest_0.6.34-1_amd64.deb ...
787s Unpacking r-cran-digest (0.6.34-1) ...
787s Selecting previously unselected package r-cran-ape.
787s Preparing to unpack .../213-r-cran-ape_5.7-1-1_amd64.deb ...
787s Unpacking r-cran-ape (5.7-1-1) ...
787s Selecting previously unselected package r-cran-generics.
787s Preparing to unpack .../214-r-cran-generics_0.1.3-1_all.deb ...
787s Unpacking r-cran-generics (0.1.3-1) ...
787s Selecting previously unselected package r-cran-dplyr.
787s Preparing to unpack .../215-r-cran-dplyr_1.1.4-1_amd64.deb ...
787s Unpacking r-cran-dplyr (1.1.4-1) ...
787s Selecting previously unselected package r-cran-igraph.
787s Preparing to unpack .../216-r-cran-igraph_1.6.0-1_amd64.deb ...
787s Unpacking r-cran-igraph (1.6.0-1) ...
787s Selecting previously unselected package r-cran-segmented.
787s Preparing to unpack .../217-r-cran-segmented_2.0-3-1_all.deb ...
787s Unpacking r-cran-segmented (2.0-3-1) ...
787s Selecting previously unselected package r-cran-seqinr.
787s Preparing to unpack .../218-r-cran-seqinr_4.2-36-1_amd64.deb ...
787s Unpacking r-cran-seqinr (4.2-36-1) ...
787s Selecting previously unselected package r-cran-purrr.
787s Preparing to unpack .../219-r-cran-purrr_1.0.2-1_amd64.deb ...
787s Unpacking r-cran-purrr (1.0.2-1) ...
787s Selecting previously unselected package r-cran-stringr.
787s Preparing to unpack .../220-r-cran-stringr_1.5.1-1_all.deb ...
787s Unpacking r-cran-stringr (1.5.1-1) ...
787s Selecting previously unselected package r-cran-tidyr.
787s Preparing to unpack .../221-r-cran-tidyr_1.3.1-1_amd64.deb ...
787s Unpacking r-cran-tidyr (1.3.1-1) ...
787s Selecting previously unselected package r-cran-alakazam.
787s Preparing to unpack .../222-r-cran-alakazam_1.3.0-1_amd64.deb ...
787s Unpacking r-cran-alakazam (1.3.0-1) ...
787s Selecting previously unselected package r-cran-base64enc.
787s Preparing to unpack .../223-r-cran-base64enc_0.1-3-3_amd64.deb ...
787s Unpacking r-cran-base64enc (0.1-3-3) ...
787s Selecting previously unselected package r-cran-brio.
787s Preparing to unpack .../224-r-cran-brio_1.1.4-1_amd64.deb ...
787s Unpacking r-cran-brio (1.1.4-1) ...
787s Selecting previously unselected package r-cran-fastmap.
787s Preparing to unpack .../225-r-cran-fastmap_1.1.1-1_amd64.deb ...
787s Unpacking r-cran-fastmap (1.1.1-1) ...
787s Selecting previously unselected package r-cran-cachem.
787s Preparing to unpack .../226-r-cran-cachem_1.0.8-1_amd64.deb ...
787s Unpacking r-cran-cachem (1.0.8-1) ...
787s Selecting previously unselected package r-cran-ellipsis.
787s Preparing to unpack .../227-r-cran-ellipsis_0.3.2-2_amd64.deb ...
787s Unpacking r-cran-ellipsis (0.3.2-2) ...
787s Selecting previously unselected package r-cran-htmltools.
787s Preparing to unpack .../228-r-cran-htmltools_0.5.7-1_amd64.deb ...
787s Unpacking r-cran-htmltools (0.5.7-1) ...
787s Selecting previously unselected package r-cran-jquerylib.
787s Preparing to unpack .../229-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
787s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
787s Selecting previously unselected package r-cran-memoise.
787s Preparing to unpack .../230-r-cran-memoise_2.0.1-1_all.deb ...
787s Unpacking r-cran-memoise (2.0.1-1) ...
787s Selecting previously unselected package r-cran-mime.
787s Preparing to unpack .../231-r-cran-mime_0.12-1_amd64.deb ...
787s Unpacking r-cran-mime (0.12-1) ...
788s Selecting previously unselected package r-cran-fs.
788s Preparing to unpack .../232-r-cran-fs_1.6.3+dfsg-1_amd64.deb ...
788s Unpacking r-cran-fs (1.6.3+dfsg-1) ...
788s Selecting previously unselected package r-cran-rappdirs.
788s Preparing to unpack .../233-r-cran-rappdirs_0.3.3-1_amd64.deb ...
788s Unpacking r-cran-rappdirs (0.3.3-1) ...
788s Selecting previously unselected package r-cran-sass.
788s Preparing to unpack .../234-r-cran-sass_0.4.8+dfsg-1_amd64.deb ...
788s Unpacking r-cran-sass (0.4.8+dfsg-1) ...
788s Selecting previously unselected package r-cran-bslib.
788s Preparing to unpack .../235-r-cran-bslib_0.6.1+dfsg-1_all.deb ...
788s Unpacking r-cran-bslib (0.6.1+dfsg-1) ...
788s Selecting previously unselected package r-cran-ps.
788s Preparing to unpack .../236-r-cran-ps_1.7.6-1_amd64.deb ...
788s Unpacking r-cran-ps (1.7.6-1) ...
788s Selecting previously unselected package r-cran-processx.
788s Preparing to unpack .../237-r-cran-processx_3.8.3-1_amd64.deb ...
788s Unpacking r-cran-processx (3.8.3-1) ...
788s Selecting previously unselected package r-cran-callr.
788s Preparing to unpack .../238-r-cran-callr_3.7.3-2_all.deb ...
788s Unpacking r-cran-callr (3.7.3-2) ...
788s Selecting previously unselected package r-cran-commonmark.
788s Preparing to unpack .../239-r-cran-commonmark_1.9.1-1_amd64.deb ...
788s Unpacking r-cran-commonmark (1.9.1-1) ...
788s Selecting previously unselected package r-cran-desc.
788s Preparing to unpack .../240-r-cran-desc_1.4.3-1_all.deb ...
788s Unpacking r-cran-desc (1.4.3-1) ...
788s Selecting previously unselected package r-cran-diffobj.
788s Preparing to unpack .../241-r-cran-diffobj_0.3.5-1_amd64.deb ...
788s Unpacking r-cran-diffobj (0.3.5-1) ...
788s Selecting previously unselected package r-cran-diptest.
788s Preparing to unpack .../242-r-cran-diptest_0.77-0-1_amd64.deb ...
788s Unpacking r-cran-diptest (0.77-0-1) ...
788s Selecting previously unselected package r-cran-iterators.
788s Preparing to unpack .../243-r-cran-iterators_1.0.14-1_all.deb ...
788s Unpacking r-cran-iterators (1.0.14-1) ...
788s Selecting previously unselected package r-cran-foreach.
788s Preparing to unpack .../244-r-cran-foreach_1.5.2-1_all.deb ...
788s Unpacking r-cran-foreach (1.5.2-1) ...
788s Selecting previously unselected package r-cran-doparallel.
788s Preparing to unpack .../245-r-cran-doparallel_1.0.17-1_all.deb ...
788s Unpacking r-cran-doparallel (1.0.17-1) ...
788s Selecting previously unselected package r-cran-evaluate.
788s Preparing to unpack .../246-r-cran-evaluate_0.23-1_all.deb ...
788s Unpacking r-cran-evaluate (0.23-1) ...
788s Selecting previously unselected package r-cran-fontawesome.
788s Preparing to unpack .../247-r-cran-fontawesome_0.5.2-1_all.deb ...
788s Unpacking r-cran-fontawesome (0.5.2-1) ...
788s Selecting previously unselected package r-cran-xfun.
788s Preparing to unpack .../248-r-cran-xfun_0.41+dfsg-1_amd64.deb ...
788s Unpacking r-cran-xfun (0.41+dfsg-1) ...
788s Selecting previously unselected package r-cran-highr.
788s Preparing to unpack .../249-r-cran-highr_0.10+dfsg-1_all.deb ...
788s Unpacking r-cran-highr (0.10+dfsg-1) ...
789s Selecting previously unselected package r-cran-later.
789s Preparing to unpack .../250-r-cran-later_1.3.2+dfsg-1_amd64.deb ...
789s Unpacking r-cran-later (1.3.2+dfsg-1) ...
789s Selecting previously unselected package r-cran-promises.
789s Preparing to unpack .../251-r-cran-promises_1.2.1+dfsg-1_amd64.deb ...
789s Unpacking r-cran-promises (1.2.1+dfsg-1) ...
789s Selecting previously unselected package r-cran-httpuv.
789s Preparing to unpack .../252-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ...
789s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ...
789s Selecting previously unselected package r-cran-kernsmooth.
789s Preparing to unpack .../253-r-cran-kernsmooth_2.23-22-1_amd64.deb ...
789s Unpacking r-cran-kernsmooth (2.23-22-1) ...
789s Selecting previously unselected package libjs-mathjax.
789s Preparing to unpack .../254-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
789s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
790s Selecting previously unselected package r-cran-knitr.
790s Preparing to unpack .../255-r-cran-knitr_1.45+dfsg-1_all.deb ...
790s Unpacking r-cran-knitr (1.45+dfsg-1) ...
790s Selecting previously unselected package r-cran-lazyeval.
790s Preparing to unpack .../256-r-cran-lazyeval_0.2.2-1build1_amd64.deb ...
790s Unpacking r-cran-lazyeval (0.2.2-1build1) ...
790s Selecting previously unselected package r-cran-pkgbuild.
790s Preparing to unpack .../257-r-cran-pkgbuild_1.4.3-1_all.deb ...
790s Unpacking r-cran-pkgbuild (1.4.3-1) ...
790s Selecting previously unselected package r-cran-rprojroot.
790s Preparing to unpack .../258-r-cran-rprojroot_2.0.4-1_all.deb ...
790s Unpacking r-cran-rprojroot (2.0.4-1) ...
790s Selecting previously unselected package r-cran-pkgload.
790s Preparing to unpack .../259-r-cran-pkgload_1.3.4-1_all.deb ...
790s Unpacking r-cran-pkgload (1.3.4-1) ...
790s Selecting previously unselected package r-cran-praise.
790s Preparing to unpack .../260-r-cran-praise_1.0.0-4build1_all.deb ...
790s Unpacking r-cran-praise (1.0.0-4build1) ...
790s Selecting previously unselected package r-cran-rematch2.
790s Preparing to unpack .../261-r-cran-rematch2_2.1.2-2build1_all.deb ...
790s Unpacking r-cran-rematch2 (2.1.2-2build1) ...
790s Selecting previously unselected package r-cran-tinytex.
790s Preparing to unpack .../262-r-cran-tinytex_0.49-1_all.deb ...
790s Unpacking r-cran-tinytex (0.49-1) ...
790s Selecting previously unselected package libjs-modernizr.
790s Preparing to unpack .../263-libjs-modernizr_2.6.2+ds1-5_all.deb ...
790s Unpacking libjs-modernizr (2.6.2+ds1-5) ...
790s Selecting previously unselected package r-cran-xtable.
790s Preparing to unpack .../264-r-cran-xtable_1%3a1.8-4-2_all.deb ...
790s Unpacking r-cran-xtable (1:1.8-4-2) ...
790s Selecting previously unselected package r-cran-sourcetools.
790s Preparing to unpack .../265-r-cran-sourcetools_0.1.7-1-1_amd64.deb ...
790s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
790s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
790s Preparing to unpack .../266-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
790s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
790s Selecting previously unselected package r-cran-shiny.
790s Preparing to unpack .../267-r-cran-shiny_1.8.0+dfsg-1_all.deb ...
790s Unpacking r-cran-shiny (1.8.0+dfsg-1) ...
790s Selecting previously unselected package r-cran-rmarkdown.
790s Preparing to unpack .../268-r-cran-rmarkdown_2.25+dfsg-3_all.deb ...
790s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ...
790s Selecting previously unselected package r-cran-shazam.
790s Preparing to unpack .../269-r-cran-shazam_1.2.0-1_all.deb ...
790s Unpacking r-cran-shazam (1.2.0-1) ...
790s Selecting previously unselected package r-cran-waldo.
790s Preparing to unpack .../270-r-cran-waldo_0.5.2-1build1_all.deb ...
790s Unpacking r-cran-waldo (0.5.2-1build1) ...
790s Selecting previously unselected package r-cran-testthat.
790s Preparing to unpack .../271-r-cran-testthat_3.2.1-1_amd64.deb ...
790s Unpacking r-cran-testthat (3.2.1-1) ...
790s Setting up libjs-json (0~20221030+~1.0.8-1) ...
790s Setting up javascript-common (11+nmu1) ...
791s Setting up libgraphite2-3:amd64 (1.3.14-2) ...
791s Setting up libpixman-1-0:amd64 (0.42.2-1) ...
791s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ...
791s Setting up libpaper1:amd64 (1.1.29) ...
791s 
791s Creating config file /etc/papersize with new version
791s Setting up fonts-mathjax (2.7.9+dfsg-1) ...
791s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ...
791s Setting up libjs-mathjax (2.7.9+dfsg-1) ...
791s Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
791s Setting up libdatrie1:amd64 (0.2.13-3) ...
791s Setting up libjs-popper.js (1.16.1+ds-6) ...
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794s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
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794s Setting up gcc (4:13.2.0-7ubuntu1) ...
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794s Setting up r-base-core (4.3.2-1build1) ...
794s 
794s Creating config file /etc/R/Renviron with new version
794s Setting up r-cran-crayon (1.5.2-1) ...
794s Setting up r-cran-labeling (0.4.3-1) ...
794s Setting up r-cran-sourcetools (0.1.7-1-1) ...
794s Setting up r-cran-futile.options (1.0.1-3build1) ...
794s Setting up r-cran-lattice (0.22-5-1) ...
794s Setting up r-cran-ps (1.7.6-1) ...
794s Setting up r-cran-nlme (3.1.164-1) ...
794s Setting up r-cran-farver (2.1.1-1) ...
794s Setting up r-cran-formatr (1.14-1) ...
794s Setting up r-cran-viridislite (0.4.2-2) ...
794s Setting up r-cran-pixmap (0.4-12-1) ...
794s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
794s Setting up r-cran-lazyeval (0.2.2-1build1) ...
794s Setting up r-cran-clipr (0.8.0-1) ...
794s Setting up r-cran-commonmark (1.9.1-1) ...
794s Setting up r-cran-r6 (2.5.1-1) ...
794s Setting up r-cran-pkgkitten (0.2.3-1) ...
794s Setting up r-cran-magrittr (2.0.3-1) ...
794s Setting up r-cran-rappdirs (0.3.3-1) ...
794s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
794s Setting up r-cran-littler (0.3.19-1) ...
794s Setting up r-cran-bh (1.84.0-1) ...
794s Setting up r-cran-fs (1.6.3+dfsg-1) ...
794s Setting up r-cran-rcpp (1.0.12-1) ...
794s Setting up r-cran-codetools (0.2-19-1) ...
794s Setting up g++-13 (13.2.0-17ubuntu2) ...
794s Setting up r-cran-brio (1.1.4-1) ...
794s Setting up r-cran-diffobj (0.3.5-1) ...
794s Setting up r-cran-diptest (0.77-0-1) ...
794s Setting up r-bioc-biocgenerics (0.48.1-2) ...
794s Setting up r-cran-rlang (1.1.3-1) ...
794s Setting up r-cran-matrixstats (1.2.0-1) ...
794s Setting up littler (0.3.19-1) ...
794s Setting up r-bioc-matrixgenerics (1.14.0-1) ...
794s Setting up r-cran-xfun (0.41+dfsg-1) ...
794s Setting up r-cran-withr (2.5.0-1) ...
794s Setting up r-cran-processx (3.8.3-1) ...
794s Setting up r-cran-mime (0.12-1) ...
794s Setting up r-cran-praise (1.0.0-4build1) ...
794s Setting up r-cran-generics (0.1.3-1) ...
794s Setting up r-cran-base64enc (0.1-3-3) ...
794s Setting up r-cran-iterators (1.0.14-1) ...
794s Setting up r-cran-abind (1.4-5-2) ...
794s Setting up r-cran-digest (0.6.34-1) ...
794s Setting up r-cran-ape (5.7-1-1) ...
794s Setting up r-cran-yaml (2.3.8-1) ...
794s Setting up r-cran-lambda.r (1.2.4-2build1) ...
794s Setting up r-cran-evaluate (0.23-1) ...
794s Setting up r-cran-highr (0.10+dfsg-1) ...
794s Setting up r-cran-foreach (1.5.2-1) ...
794s Setting up r-cran-prettyunits (1.2.0-1) ...
794s Setting up r-cran-fansi (1.0.5-1) ...
794s Setting up r-cran-mass (7.3-60.0.1-1) ...
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794s Setting up r-cran-glue (1.7.0-1) ...
794s Setting up r-cran-bit (4.0.5-1) ...
794s Setting up r-cran-xtable (1:1.8-4-2) ...
794s Setting up r-cran-cli (3.6.2-1) ...
794s Setting up gfortran (4:13.2.0-7ubuntu1) ...
794s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
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794s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
794s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
794s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
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794s Setting up r-cran-rprojroot (2.0.4-1) ...
794s Setting up r-cran-bit64 (4.0.5-1) ...
794s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
794s Setting up r-cran-fastmap (1.1.1-1) ...
794s Setting up r-bioc-biobase (2.62.0-1) ...
794s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
794s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
794s Setting up r-cran-sp (1:2.1-2+dfsg-1) ...
794s Setting up r-cran-utf8 (1.2.4-1) ...
794s Setting up r-cran-colorspace (2.1-0+dfsg-1) ...
794s Setting up r-cran-stringi (1.8.3-1) ...
794s Setting up r-cran-cpp11 (0.4.7-1) ...
794s Setting up r-cran-segmented (2.0-3-1) ...
794s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
794s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
794s Setting up r-cran-isoband (0.2.7-1) ...
794s Setting up r-cran-futile.logger (1.4.3-4build1) ...
794s Setting up r-cran-gtable (0.3.4+dfsg-1) ...
794s Setting up r-cran-later (1.3.2+dfsg-1) ...
794s Setting up r-cran-matrix (1.6-5-1) ...
794s Setting up r-cran-doparallel (1.0.17-1) ...
794s Setting up r-cran-tinytex (0.49-1) ...
794s Setting up r-cran-kernsmooth (2.23-22-1) ...
794s Setting up r-cran-knitr (1.45+dfsg-1) ...
794s Setting up r-cran-mgcv (1.9-1-1) ...
794s Setting up g++ (4:13.2.0-7ubuntu1) ...
794s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
794s Setting up r-cran-cachem (1.0.8-1) ...
794s Setting up build-essential (12.10ubuntu1) ...
794s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ...
794s Setting up r-bioc-iranges (2.36.0-1) ...
794s Setting up r-cran-tzdb (0.4.0-2) ...
794s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ...
794s Setting up r-cran-vctrs (0.6.5-1) ...
794s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
794s Setting up r-cran-ellipsis (0.3.2-2) ...
794s Setting up r-base-dev (4.3.2-1build1) ...
794s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ...
794s Setting up r-cran-stringr (1.5.1-1) ...
794s Setting up r-bioc-biocparallel (1.36.0-1) ...
794s Setting up r-cran-callr (3.7.3-2) ...
794s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ...
794s Setting up r-cran-desc (1.4.3-1) ...
794s Setting up r-cran-munsell (0.5.0-2build1) ...
794s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
794s Setting up r-cran-igraph (1.6.0-1) ...
794s Setting up r-cran-ade4 (1.7-22-1) ...
794s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ...
794s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
794s Setting up r-cran-hms (1.1.3-1) ...
794s Setting up r-cran-scales (1.3.0-1) ...
794s Setting up r-cran-memoise (2.0.1-1) ...
794s Setting up r-cran-promises (1.2.1+dfsg-1) ...
794s Setting up r-cran-purrr (1.0.2-1) ...
794s Setting up r-cran-htmltools (0.5.7-1) ...
794s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
794s Setting up r-bioc-xvector (0.42.0-1) ...
794s Setting up r-cran-pkgbuild (1.4.3-1) ...
794s Setting up r-cran-sass (0.4.8+dfsg-1) ...
794s Setting up r-cran-dplyr (1.1.4-1) ...
794s Setting up r-cran-progress (1.2.3-1) ...
794s Setting up r-cran-pkgload (1.3.4-1) ...
794s Setting up r-cran-vroom (1.6.5-1) ...
794s Setting up r-cran-seqinr (4.2-36-1) ...
794s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ...
794s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ...
794s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ...
794s Setting up r-cran-httpuv (1.6.14+dfsg-1) ...
794s Setting up r-cran-rematch2 (2.1.2-2build1) ...
794s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ...
794s Setting up r-cran-fontawesome (0.5.2-1) ...
794s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
794s Setting up r-cran-bslib (0.6.1+dfsg-1) ...
794s Setting up r-cran-readr (2.1.5-1) ...
794s Setting up r-cran-waldo (0.5.2-1build1) ...
794s Setting up r-cran-tidyr (1.3.1-1) ...
794s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ...
794s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ...
794s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
794s Setting up r-cran-shiny (1.8.0+dfsg-1) ...
794s Setting up r-cran-airr (1.5.0+dfsg-1) ...
794s Setting up r-cran-testthat (3.2.1-1) ...
794s Setting up r-cran-rmarkdown (2.25+dfsg-3) ...
794s Setting up r-bioc-genomicalignments (1.38.2-1) ...
794s Setting up r-cran-alakazam (1.3.0-1) ...
794s Setting up r-cran-shazam (1.2.0-1) ...
794s Processing triggers for libc-bin (2.39-0ubuntu6) ...
794s Processing triggers for man-db (2.12.0-3) ...
796s Processing triggers for install-info (7.1-3) ...
797s Reading package lists...
798s Building dependency tree...
798s Reading state information...
798s Starting pkgProblemResolver with broken count: 0
798s Starting 2 pkgProblemResolver with broken count: 0
798s Done
799s The following NEW packages will be installed:
799s   autopkgtest-satdep
799s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
799s Need to get 0 B/696 B of archives.
799s After this operation, 0 B of additional disk space will be used.
799s Get:1 /tmp/autopkgtest.8NfX53/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B]
799s Selecting previously unselected package autopkgtest-satdep.
799s (Reading database ... 
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799s Preparing to unpack .../2-autopkgtest-satdep.deb ...
799s Unpacking autopkgtest-satdep (0) ...
799s Setting up autopkgtest-satdep (0) ...
801s (Reading database ... 114359 files and directories currently installed.)
801s Removing autopkgtest-satdep (0) ...
801s autopkgtest [21:06:46]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
801s autopkgtest [21:06:46]: test pkg-r-autopkgtest: [-----------------------
801s Test: Try to load the R library shazam
801s 
801s R version 4.3.2 (2023-10-31) -- "Eye Holes"
801s Copyright (C) 2023 The R Foundation for Statistical Computing
801s Platform: x86_64-pc-linux-gnu (64-bit)
801s 
801s R is free software and comes with ABSOLUTELY NO WARRANTY.
801s You are welcome to redistribute it under certain conditions.
801s Type 'license()' or 'licence()' for distribution details.
801s 
801s R is a collaborative project with many contributors.
801s Type 'contributors()' for more information and
801s 'citation()' on how to cite R or R packages in publications.
801s 
801s Type 'demo()' for some demos, 'help()' for on-line help, or
801s 'help.start()' for an HTML browser interface to help.
801s Type 'q()' to quit R.
801s 
801s > library('shazam')
801s Loading required package: ggplot2
810s 
810s 
810s To cite the SHazaM package in publications, please use:
810s 
810s   Gupta N, Vander Heiden J, Uduman M, Gadala-Maria D, Yaari G,
810s   Kleinstein S (2015). “Change-O: a toolkit for analyzing large-scale B
810s   cell immunoglobulin repertoire sequencing data.” _Bioinformatics_,
810s   1-3. doi:10.1093/bioinformatics/btv359
810s   <https://doi.org/10.1093/bioinformatics/btv359>.
810s 
810s To cite the selection analysis methods, please use:
810s 
810s   Yaari G, Uduman M, Kleinstein S (2012). “Quantifying selection in
810s   high-throughput Immunoglobulin sequencing data sets.” _Nucleic acids
810s   research_, *40*(17), e134. doi:10.1093/nar/gks457
810s   <https://doi.org/10.1093/nar/gks457>.
810s 
810s To cite the HH_S5F model and the targeting model generation methods,
810s please use:
810s 
810s   Yaari G, Vander Heiden J, Uduman M, Gadala-Maria D, Gupta N, Stern J,
810s   O'Connor K, Hafler D, Lasserson U, Vigneault F, Kleinstein S (2013).
810s   “Models of somatic hypermutation targeting and substitution based on
810s   synonymous mutations from high-throughput immunoglobulin sequencing
810s   data.” _Frontiers in Immunology_, *4*(358), 1-11.
810s   doi:10.3389/fimmu.2013.00358
810s   <https://doi.org/10.3389/fimmu.2013.00358>.
810s 
810s To cite the HKL_S1F, HKL_S5F, MK_RS1NF, and MK_RS5NF models, please
810s use:
810s 
810s   Cui A, Di Niro R, Vander Heiden J, Briggs A, Adams K, Gilbert T,
810s   O'Connor K, Vigneault F, Shlomchik M, Kleinstein S (2016). “A Model
810s   of Somatic Hypermutation Targeting in Mice Based on High-Throughput
810s   Ig Sequencing Data.” _The Journal of Immunology_, *197*(9),
810s   3566-3574. doi:10.4049/jimmunol.1502263
810s   <https://doi.org/10.4049/jimmunol.1502263>.
810s 
810s To see these entries in BibTeX format, use 'format(<citation>,
810s bibtex=TRUE)', or 'toBibtex(.)'.
810s > 
810s > 
810s Other tests are currently unsupported!
810s They will be progressively added.
810s autopkgtest [21:06:55]: test pkg-r-autopkgtest: -----------------------]
811s autopkgtest [21:06:56]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
811s pkg-r-autopkgtest    PASS
811s autopkgtest [21:06:56]: @@@@@@@@@@@@@@@@@@@@ summary
811s pkg-r-autopkgtest    PASS
821s Creating nova instance adt-noble-i386-r-cran-shazam-20240323-205325-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240323.img (UUID 5df8a563-0957-4fdd-8453-862df650aaf8)...