0s autopkgtest [12:33:20]: starting date and time: 2024-03-23 12:33:20+0000 0s autopkgtest [12:33:20]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [12:33:20]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jo_pxf9_/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-cran-prabclus --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-34.secgroup --name adt-noble-i386-r-cran-prabclus-20240323-123320-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 82s autopkgtest [12:34:42]: testbed dpkg architecture: amd64 82s autopkgtest [12:34:42]: testbed apt version: 2.7.12 82s autopkgtest [12:34:42]: test architecture: i386 82s autopkgtest [12:34:42]: @@@@@@@@@@@@@@@@@@@@ test bed setup 82s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 83s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 83s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 83s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3975 kB] 83s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 83s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [686 kB] 83s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [451 kB] 83s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 83s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 83s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 83s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 83s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4399 kB] 83s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1296 kB] 83s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 83s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [27.1 kB] 83s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [96.1 kB] 83s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 86s Fetched 11.7 MB in 2s (7337 kB/s) 86s Reading package lists... 88s Reading package lists... 89s Building dependency tree... 89s Reading state information... 89s Calculating upgrade... 89s The following packages will be upgraded: 89s libc-bin libc6 locales 89s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 89s Need to get 8176 kB of archives. 89s After this operation, 2048 B of additional disk space will be used. 89s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc6 amd64 2.39-0ubuntu6 [3262 kB] 89s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libc-bin amd64 2.39-0ubuntu6 [682 kB] 89s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 locales all 2.39-0ubuntu6 [4232 kB] 90s Preconfiguring packages ... 90s Fetched 8176 kB in 0s (91.4 MB/s) 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 90s Preparing to unpack .../libc6_2.39-0ubuntu6_amd64.deb ... 90s Unpacking libc6:amd64 (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 90s Setting up libc6:amd64 (2.39-0ubuntu6) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 91s Preparing to unpack .../libc-bin_2.39-0ubuntu6_amd64.deb ... 91s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 91s Setting up libc-bin (2.39-0ubuntu6) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 91s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ... 91s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 91s Setting up locales (2.39-0ubuntu6) ... 92s Generating locales (this might take a while)... 93s en_US.UTF-8... done 93s Generation complete. 93s Processing triggers for man-db (2.12.0-3) ... 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s sh: Attempting to set up Debian/Ubuntu apt sources automatically 96s sh: Distribution appears to be Ubuntu 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s eatmydata is already the newest version (131-1). 97s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 98s dbus is already the newest version (1.14.10-4ubuntu1). 98s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 98s rng-tools-debian is already the newest version (2.4). 98s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 98s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s The following packages will be REMOVED: 99s cloud-init* python3-configobj* python3-debconf* 99s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 99s After this operation, 3256 kB disk space will be freed. 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 99s Removing cloud-init (24.1.2-0ubuntu1) ... 100s Removing python3-configobj (5.0.8-3) ... 100s Removing python3-debconf (1.5.86) ... 100s Processing triggers for man-db (2.12.0-3) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 100s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 101s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 101s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 101s invoke-rc.d: policy-rc.d denied execution of try-restart. 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 102s linux-generic is already the newest version (6.8.0-11.11+1). 102s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 102s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 102s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 102s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 104s Reading package lists... 104s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s Calculating upgrade... 105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s autopkgtest [12:35:06]: rebooting testbed after setup commands that affected boot 133s autopkgtest [12:35:33]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 134s autopkgtest [12:35:34]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-prabclus 135s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-prabclus 2.3-3-1 (dsc) [2190 B] 135s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-prabclus 2.3-3-1 (tar) [192 kB] 135s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-prabclus 2.3-3-1 (diff) [2544 B] 135s gpgv: Signature made Tue Nov 21 14:28:24 2023 UTC 135s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 135s gpgv: issuer "tille@debian.org" 135s gpgv: Can't check signature: No public key 135s dpkg-source: warning: cannot verify inline signature for ./r-cran-prabclus_2.3-3-1.dsc: no acceptable signature found 135s autopkgtest [12:35:35]: testing package r-cran-prabclus version 2.3-3-1 135s autopkgtest [12:35:35]: build not needed 139s autopkgtest [12:35:39]: test run-unit-test: preparing testbed 143s Note, using file '/tmp/autopkgtest.bh4YRB/1-autopkgtest-satdep.dsc' to get the build dependencies 143s Reading package lists... 143s Building dependency tree... 143s Reading state information... 143s Starting pkgProblemResolver with broken count: 0 143s Starting 2 pkgProblemResolver with broken count: 0 143s Done 144s The following NEW packages will be installed: 144s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 144s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++ g++-13 144s g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 144s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins libaec0 144s libarmadillo12 libarpack2 libasan8 libatomic1 libblas3 libblosc1 144s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcfitsio10 libcrypt-dev 144s libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 libfreexl1 144s libfyba0 libgcc-13-dev libgdal34 libgeos-c1v5 libgeos3.12.1 libgeotiff5 144s libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt 144s libhdf5-103-1 libhdf5-hl-100 libheif-plugin-dav1d libheif-plugin-libde265 144s libheif1 libhwasan0 libice6 libisl23 libitm1 libjbig0 libjpeg-turbo8 144s libjpeg8 libkmlbase1 libkmldom1 libkmlengine1 liblapack3 liblcms2-2 liblerc4 144s liblsan0 libltdl7 libminizip1 libmpc3 libmysqlclient21 libnetcdf19 libodbc2 144s libodbcinst2 libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 144s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpoppler134 144s libpq5 libproj25 libqhull-r8.0 libquadmath0 librttopo1 libsharpyuv0 libsm6 144s libsnappy1v5 libspatialite8 libstdc++-13-dev libsuperlu6 libsz2 libtcl8.6 144s libthai-data libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 libudunits2-0 144s libudunits2-data liburiparser1 libwebp7 libxcb-render0 libxcb-shm0 144s libxerces-c3.2 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev littler 144s mysql-common proj-data r-base-core r-cran-boot r-cran-class r-cran-classint 144s r-cran-coda r-cran-codetools r-cran-dbi r-cran-deldir r-cran-e1071 144s r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-learnbayes 144s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mclust 144s r-cran-multcomp r-cran-mvtnorm r-cran-nlme r-cran-pkgkitten r-cran-prabclus 144s r-cran-proxy r-cran-rcpp r-cran-s2 r-cran-sandwich r-cran-sf r-cran-sp 144s r-cran-spatialreg r-cran-spdata r-cran-spdep r-cran-survival r-cran-th.data 144s r-cran-units r-cran-wk r-cran-zoo rpcsvc-proto unixodbc-common unzip 144s x11-common xdg-utils zip 144s 0 upgraded, 162 newly installed, 0 to remove and 0 not upgraded. 144s Need to get 188 MB of archives. 144s After this operation, 508 MB of additional disk space will be used. 144s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu6 [20.4 kB] 144s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 144s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 144s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 144s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu6 [2126 kB] 144s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 144s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 144s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 144s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 144s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 144s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 144s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 144s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 144s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 144s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 144s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 144s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 144s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 144s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 144s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 144s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 144s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 144s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 144s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 144s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 144s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 144s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 144s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 144s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 144s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 144s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 144s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 144s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 144s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 144s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 144s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 144s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 144s Get:38 http://ftpmaster.internal/ubuntu noble/universe amd64 gdal-data all 3.8.4+dfsg-1 [261 kB] 144s Get:39 http://ftpmaster.internal/ubuntu noble/universe amd64 gdal-plugins amd64 3.8.4+dfsg-1 [24.5 kB] 144s Get:40 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 144s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 144s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 144s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 144s Get:44 http://ftpmaster.internal/ubuntu noble/universe amd64 libarpack2 amd64 3.9.1-1 [105 kB] 144s Get:45 http://ftpmaster.internal/ubuntu noble/universe amd64 libsuperlu6 amd64 6.0.1+dfsg1-1 [184 kB] 144s Get:46 http://ftpmaster.internal/ubuntu noble/universe amd64 libarmadillo12 amd64 1:12.6.7+dfsg-1 [135 kB] 144s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libsnappy1v5 amd64 1.1.10-1 [28.4 kB] 144s Get:48 http://ftpmaster.internal/ubuntu noble/universe amd64 libblosc1 amd64 1.21.5+ds-1 [36.5 kB] 144s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 144s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 144s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 144s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 144s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 144s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 libcfitsio10 amd64 4.3.1-1 [528 kB] 144s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 144s Get:56 http://ftpmaster.internal/ubuntu noble/universe amd64 libdav1d7 amd64 1.4.0-1 [605 kB] 144s Get:57 http://ftpmaster.internal/ubuntu noble/universe amd64 libde265-0 amd64 1.0.15-1 [192 kB] 144s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 144s Get:59 http://ftpmaster.internal/ubuntu noble/universe amd64 libfyba0 amd64 4.1.1-8 [119 kB] 144s Get:60 http://ftpmaster.internal/ubuntu noble/universe amd64 libminizip1 amd64 1:1.3.dfsg-3ubuntu1 [21.8 kB] 144s Get:61 http://ftpmaster.internal/ubuntu noble/universe amd64 libfreexl1 amd64 2.0.0-1 [41.8 kB] 144s Get:62 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeos3.12.1 amd64 3.12.1-1 [852 kB] 144s Get:63 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeos-c1v5 amd64 3.12.1-1 [96.1 kB] 144s Get:64 http://ftpmaster.internal/ubuntu noble/universe amd64 proj-data all 9.3.1-1 [7867 kB] 145s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 145s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 145s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 145s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 145s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 145s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 145s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 145s Get:72 http://ftpmaster.internal/ubuntu noble/universe amd64 libproj25 amd64 9.3.1-1 [1379 kB] 145s Get:73 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeotiff5 amd64 1.7.1-5 [62.5 kB] 145s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libgif7 amd64 5.2.1-2.5 [34.0 kB] 145s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf4-0-alt amd64 4.2.16-3 [282 kB] 145s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 145s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 145s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif-plugin-dav1d amd64 1.17.6-1ubuntu1 [10.9 kB] 145s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif-plugin-libde265 amd64 1.17.6-1ubuntu1 [9024 B] 145s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif1 amd64 1.17.6-1ubuntu1 [325 kB] 145s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 liburiparser1 amd64 0.9.7+dfsg-2 [35.9 kB] 145s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmlbase1 amd64 1.3.0-10 [47.4 kB] 145s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmldom1 amd64 1.3.0-10 [151 kB] 145s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmlengine1 amd64 1.3.0-10 [69.3 kB] 145s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 mysql-common all 5.8+1.1.0 [6626 B] 145s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libmysqlclient21 amd64 8.0.36-1 [1283 kB] 145s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB] 145s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libnetcdf19 amd64 1:4.9.2-3ubuntu1 [472 kB] 145s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libltdl7 amd64 2.4.7-7 [40.5 kB] 145s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libodbc2 amd64 2.3.12-1 [159 kB] 145s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 unixodbc-common all 2.3.12-1 [8524 B] 145s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libodbcinst2 amd64 2.3.12-1 [30.9 kB] 145s Get:93 http://ftpmaster.internal/ubuntu noble/universe amd64 libogdi4.1 amd64 4.1.1+ds-1 [218 kB] 145s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libopenjp2-7 amd64 2.5.0-2 [174 kB] 145s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblcms2-2 amd64 2.14-2 [161 kB] 145s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libpoppler134 amd64 24.02.0-1ubuntu2 [1112 kB] 145s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libpq5 amd64 16.2-1 [138 kB] 145s Get:98 http://ftpmaster.internal/ubuntu noble/universe amd64 libqhull-r8.0 amd64 2020.2-6 [194 kB] 145s Get:99 http://ftpmaster.internal/ubuntu noble/universe amd64 librttopo1 amd64 1.1.0-3 [191 kB] 145s Get:100 http://ftpmaster.internal/ubuntu noble/universe amd64 libspatialite8 amd64 5.1.0-1 [2055 kB] 145s Get:101 http://ftpmaster.internal/ubuntu noble/universe amd64 libxerces-c3.2 amd64 3.2.4+debian-1.1 [1110 kB] 145s Get:102 http://ftpmaster.internal/ubuntu noble/universe amd64 libgdal34 amd64 3.8.4+dfsg-1 [8343 kB] 145s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 145s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 145s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 145s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 145s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 145s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 145s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 145s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 145s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 145s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 145s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 145s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 145s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 145s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 145s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 145s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.14-1 [779 kB] 145s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 libudunits2-data all 2.2.28-7 [19.3 kB] 145s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 libudunits2-0 amd64 2.2.28-7 [54.2 kB] 145s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 145s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 145s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 145s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 145s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 145s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 145s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 145s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-boot all 1.3-30-1 [619 kB] 145s Get:129 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 145s Get:130 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-class amd64 7.3-22-2 [88.3 kB] 145s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 145s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-e1071 amd64 1.7-14-1 [558 kB] 145s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-kernsmooth amd64 2.23-22-1 [91.7 kB] 145s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-classint amd64 0.4-10+dfsg-1 [106 kB] 145s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 145s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-coda all 0.19-4.1-1 [321 kB] 145s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 145s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 145s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-deldir amd64 2.0-4-1 [270 kB] 145s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-foreign amd64 0.8.86-1 [242 kB] 145s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-learnbayes all 2.15.1-4build1 [963 kB] 145s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 145s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 145s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mclust amd64 6.0.1-1 [3913 kB] 145s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mvtnorm amd64 1.2-4-1 [724 kB] 145s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 145s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-th.data all 1.1-2-2 [8794 kB] 145s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB] 145s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sandwich all 3.1-0-1 [1484 kB] 145s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-multcomp all 1.4-25-1 [709 kB] 145s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 145s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 145s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prabclus all 2.3-3-1 [521 kB] 145s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 145s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-wk amd64 0.9.1-1 [1784 kB] 145s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-s2 amd64 1.1.6-1 [1980 kB] 145s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-units amd64 0.8-5+dfsg-1 [275 kB] 145s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sf amd64 1.0-15+dfsg-1 [3028 kB] 145s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sp amd64 1:2.1-2+dfsg-1 [1447 kB] 145s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spdata all 2.3.0-1 [3734 kB] 145s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spdep amd64 1.3-1+dfsg-1 [2134 kB] 145s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatialreg amd64 1.3-1+dfsg-1 [916 kB] 146s Preconfiguring packages ... 146s Fetched 188 MB in 2s (119 MB/s) 146s Selecting previously unselected package libc-dev-bin. 146s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 146s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu6_amd64.deb ... 146s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 146s Selecting previously unselected package linux-libc-dev:amd64. 146s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 146s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 146s Selecting previously unselected package libcrypt-dev:amd64. 146s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 146s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 146s Selecting previously unselected package rpcsvc-proto. 146s Preparing to unpack .../003-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 146s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 146s Selecting previously unselected package libc6-dev:amd64. 146s Preparing to unpack .../004-libc6-dev_2.39-0ubuntu6_amd64.deb ... 146s Unpacking libc6-dev:amd64 (2.39-0ubuntu6) ... 147s Selecting previously unselected package libisl23:amd64. 147s Preparing to unpack .../005-libisl23_0.26-3_amd64.deb ... 147s Unpacking libisl23:amd64 (0.26-3) ... 147s Selecting previously unselected package libmpc3:amd64. 147s Preparing to unpack .../006-libmpc3_1.3.1-1_amd64.deb ... 147s Unpacking libmpc3:amd64 (1.3.1-1) ... 147s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 147s Preparing to unpack .../007-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 147s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 147s Selecting previously unselected package cpp-13. 147s Preparing to unpack .../008-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 147s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 147s Selecting previously unselected package cpp-x86-64-linux-gnu. 147s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 147s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 147s Selecting previously unselected package cpp. 147s Preparing to unpack .../010-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 147s Unpacking cpp (4:13.2.0-7ubuntu1) ... 147s Selecting previously unselected package libcc1-0:amd64. 147s Preparing to unpack .../011-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 147s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 147s Selecting previously unselected package libgomp1:amd64. 147s Preparing to unpack .../012-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 147s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 147s Selecting previously unselected package libitm1:amd64. 147s Preparing to unpack .../013-libitm1_14-20240303-1ubuntu1_amd64.deb ... 147s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 147s Selecting previously unselected package libatomic1:amd64. 147s Preparing to unpack .../014-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 147s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 147s Selecting previously unselected package libasan8:amd64. 147s Preparing to unpack .../015-libasan8_14-20240303-1ubuntu1_amd64.deb ... 147s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 147s Selecting previously unselected package liblsan0:amd64. 147s Preparing to unpack .../016-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 147s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 147s Selecting previously unselected package libtsan2:amd64. 147s Preparing to unpack .../017-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 147s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 147s Selecting previously unselected package libubsan1:amd64. 147s Preparing to unpack .../018-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 147s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 147s Selecting previously unselected package libhwasan0:amd64. 147s Preparing to unpack .../019-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 147s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 147s Selecting previously unselected package libquadmath0:amd64. 147s Preparing to unpack .../020-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 147s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 147s Selecting previously unselected package libgcc-13-dev:amd64. 147s Preparing to unpack .../021-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 147s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 147s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 147s Preparing to unpack .../022-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 147s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 148s Selecting previously unselected package gcc-13. 148s Preparing to unpack .../023-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 148s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 148s Selecting previously unselected package gcc-x86-64-linux-gnu. 148s Preparing to unpack .../024-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 148s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 148s Selecting previously unselected package gcc. 148s Preparing to unpack .../025-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 148s Unpacking gcc (4:13.2.0-7ubuntu1) ... 148s Selecting previously unselected package libstdc++-13-dev:amd64. 148s Preparing to unpack .../026-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 148s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 148s Selecting previously unselected package g++-13-x86-64-linux-gnu. 148s Preparing to unpack .../027-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 148s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 148s Selecting previously unselected package g++-13. 148s Preparing to unpack .../028-g++-13_13.2.0-17ubuntu2_amd64.deb ... 148s Unpacking g++-13 (13.2.0-17ubuntu2) ... 148s Selecting previously unselected package g++-x86-64-linux-gnu. 148s Preparing to unpack .../029-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 148s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 148s Selecting previously unselected package g++. 149s Preparing to unpack .../030-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 149s Unpacking g++ (4:13.2.0-7ubuntu1) ... 149s Selecting previously unselected package build-essential. 149s Preparing to unpack .../031-build-essential_12.10ubuntu1_amd64.deb ... 149s Unpacking build-essential (12.10ubuntu1) ... 149s Selecting previously unselected package fonts-dejavu-mono. 149s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8_all.deb ... 149s Unpacking fonts-dejavu-mono (2.37-8) ... 149s Selecting previously unselected package fonts-dejavu-core. 149s Preparing to unpack .../033-fonts-dejavu-core_2.37-8_all.deb ... 149s Unpacking fonts-dejavu-core (2.37-8) ... 149s Selecting previously unselected package fontconfig-config. 149s Preparing to unpack .../034-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 149s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 149s Selecting previously unselected package libfontconfig1:amd64. 149s Preparing to unpack .../035-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 149s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 149s Selecting previously unselected package fontconfig. 149s Preparing to unpack .../036-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 149s Unpacking fontconfig (2.15.0-1ubuntu1) ... 149s Selecting previously unselected package gdal-data. 149s Preparing to unpack .../037-gdal-data_3.8.4+dfsg-1_all.deb ... 149s Unpacking gdal-data (3.8.4+dfsg-1) ... 149s Selecting previously unselected package gdal-plugins:amd64. 149s Preparing to unpack .../038-gdal-plugins_3.8.4+dfsg-1_amd64.deb ... 149s Unpacking gdal-plugins:amd64 (3.8.4+dfsg-1) ... 149s Selecting previously unselected package libaec0:amd64. 149s Preparing to unpack .../039-libaec0_1.1.2-1_amd64.deb ... 149s Unpacking libaec0:amd64 (1.1.2-1) ... 149s Selecting previously unselected package libblas3:amd64. 149s Preparing to unpack .../040-libblas3_3.12.0-3_amd64.deb ... 149s Unpacking libblas3:amd64 (3.12.0-3) ... 149s Selecting previously unselected package libgfortran5:amd64. 149s Preparing to unpack .../041-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 149s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 149s Selecting previously unselected package liblapack3:amd64. 149s Preparing to unpack .../042-liblapack3_3.12.0-3_amd64.deb ... 149s Unpacking liblapack3:amd64 (3.12.0-3) ... 149s Selecting previously unselected package libarpack2:amd64. 149s Preparing to unpack .../043-libarpack2_3.9.1-1_amd64.deb ... 149s Unpacking libarpack2:amd64 (3.9.1-1) ... 149s Selecting previously unselected package libsuperlu6:amd64. 149s Preparing to unpack .../044-libsuperlu6_6.0.1+dfsg1-1_amd64.deb ... 149s Unpacking libsuperlu6:amd64 (6.0.1+dfsg1-1) ... 149s Selecting previously unselected package libarmadillo12. 149s Preparing to unpack .../045-libarmadillo12_1%3a12.6.7+dfsg-1_amd64.deb ... 149s Unpacking libarmadillo12 (1:12.6.7+dfsg-1) ... 149s Selecting previously unselected package libsnappy1v5:amd64. 149s Preparing to unpack .../046-libsnappy1v5_1.1.10-1_amd64.deb ... 149s Unpacking libsnappy1v5:amd64 (1.1.10-1) ... 149s Selecting previously unselected package libblosc1:amd64. 149s Preparing to unpack .../047-libblosc1_1.21.5+ds-1_amd64.deb ... 149s Unpacking libblosc1:amd64 (1.21.5+ds-1) ... 149s Selecting previously unselected package libpixman-1-0:amd64. 149s Preparing to unpack .../048-libpixman-1-0_0.42.2-1_amd64.deb ... 149s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 149s Selecting previously unselected package libxcb-render0:amd64. 149s Preparing to unpack .../049-libxcb-render0_1.15-1_amd64.deb ... 149s Unpacking libxcb-render0:amd64 (1.15-1) ... 149s Selecting previously unselected package libxcb-shm0:amd64. 149s Preparing to unpack .../050-libxcb-shm0_1.15-1_amd64.deb ... 149s Unpacking libxcb-shm0:amd64 (1.15-1) ... 149s Selecting previously unselected package libxrender1:amd64. 150s Preparing to unpack .../051-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 150s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 150s Selecting previously unselected package libcairo2:amd64. 150s Preparing to unpack .../052-libcairo2_1.18.0-1_amd64.deb ... 150s Unpacking libcairo2:amd64 (1.18.0-1) ... 150s Selecting previously unselected package libcfitsio10:amd64. 150s Preparing to unpack .../053-libcfitsio10_4.3.1-1_amd64.deb ... 150s Unpacking libcfitsio10:amd64 (4.3.1-1) ... 150s Selecting previously unselected package libdatrie1:amd64. 150s Preparing to unpack .../054-libdatrie1_0.2.13-3_amd64.deb ... 150s Unpacking libdatrie1:amd64 (0.2.13-3) ... 150s Selecting previously unselected package libdav1d7:amd64. 150s Preparing to unpack .../055-libdav1d7_1.4.0-1_amd64.deb ... 150s Unpacking libdav1d7:amd64 (1.4.0-1) ... 150s Selecting previously unselected package libde265-0:amd64. 150s Preparing to unpack .../056-libde265-0_1.0.15-1_amd64.deb ... 150s Unpacking libde265-0:amd64 (1.0.15-1) ... 150s Selecting previously unselected package libdeflate0:amd64. 150s Preparing to unpack .../057-libdeflate0_1.19-1_amd64.deb ... 150s Unpacking libdeflate0:amd64 (1.19-1) ... 150s Selecting previously unselected package libfyba0:amd64. 150s Preparing to unpack .../058-libfyba0_4.1.1-8_amd64.deb ... 150s Unpacking libfyba0:amd64 (4.1.1-8) ... 150s Selecting previously unselected package libminizip1:amd64. 150s Preparing to unpack .../059-libminizip1_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 150s Unpacking libminizip1:amd64 (1:1.3.dfsg-3ubuntu1) ... 150s Selecting previously unselected package libfreexl1:amd64. 150s Preparing to unpack .../060-libfreexl1_2.0.0-1_amd64.deb ... 150s Unpacking libfreexl1:amd64 (2.0.0-1) ... 150s Selecting previously unselected package libgeos3.12.1:amd64. 150s Preparing to unpack .../061-libgeos3.12.1_3.12.1-1_amd64.deb ... 150s Unpacking libgeos3.12.1:amd64 (3.12.1-1) ... 150s Selecting previously unselected package libgeos-c1v5:amd64. 150s Preparing to unpack .../062-libgeos-c1v5_3.12.1-1_amd64.deb ... 150s Unpacking libgeos-c1v5:amd64 (3.12.1-1) ... 150s Selecting previously unselected package proj-data. 150s Preparing to unpack .../063-proj-data_9.3.1-1_all.deb ... 150s Unpacking proj-data (9.3.1-1) ... 150s Selecting previously unselected package libjbig0:amd64. 150s Preparing to unpack .../064-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 150s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 150s Selecting previously unselected package libjpeg-turbo8:amd64. 150s Preparing to unpack .../065-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 150s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 150s Selecting previously unselected package libjpeg8:amd64. 150s Preparing to unpack .../066-libjpeg8_8c-2ubuntu11_amd64.deb ... 150s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 150s Selecting previously unselected package liblerc4:amd64. 150s Preparing to unpack .../067-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 150s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 150s Selecting previously unselected package libsharpyuv0:amd64. 150s Preparing to unpack .../068-libsharpyuv0_1.3.2-0.4_amd64.deb ... 150s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 150s Selecting previously unselected package libwebp7:amd64. 150s Preparing to unpack .../069-libwebp7_1.3.2-0.4_amd64.deb ... 150s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 150s Selecting previously unselected package libtiff6:amd64. 150s Preparing to unpack .../070-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 150s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 150s Selecting previously unselected package libproj25:amd64. 150s Preparing to unpack .../071-libproj25_9.3.1-1_amd64.deb ... 150s Unpacking libproj25:amd64 (9.3.1-1) ... 150s Selecting previously unselected package libgeotiff5:amd64. 150s Preparing to unpack .../072-libgeotiff5_1.7.1-5_amd64.deb ... 150s Unpacking libgeotiff5:amd64 (1.7.1-5) ... 150s Selecting previously unselected package libgif7:amd64. 150s Preparing to unpack .../073-libgif7_5.2.1-2.5_amd64.deb ... 150s Unpacking libgif7:amd64 (5.2.1-2.5) ... 150s Selecting previously unselected package libhdf4-0-alt. 150s Preparing to unpack .../074-libhdf4-0-alt_4.2.16-3_amd64.deb ... 150s Unpacking libhdf4-0-alt (4.2.16-3) ... 150s Selecting previously unselected package libsz2:amd64. 150s Preparing to unpack .../075-libsz2_1.1.2-1_amd64.deb ... 150s Unpacking libsz2:amd64 (1.1.2-1) ... 150s Selecting previously unselected package libhdf5-103-1:amd64. 150s Preparing to unpack .../076-libhdf5-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 150s Unpacking libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 150s Selecting previously unselected package libheif-plugin-dav1d:amd64. 150s Preparing to unpack .../077-libheif-plugin-dav1d_1.17.6-1ubuntu1_amd64.deb ... 150s Unpacking libheif-plugin-dav1d:amd64 (1.17.6-1ubuntu1) ... 150s Selecting previously unselected package libheif-plugin-libde265:amd64. 150s Preparing to unpack .../078-libheif-plugin-libde265_1.17.6-1ubuntu1_amd64.deb ... 150s Unpacking libheif-plugin-libde265:amd64 (1.17.6-1ubuntu1) ... 150s Selecting previously unselected package libheif1:amd64. 150s Preparing to unpack .../079-libheif1_1.17.6-1ubuntu1_amd64.deb ... 150s Unpacking libheif1:amd64 (1.17.6-1ubuntu1) ... 151s Selecting previously unselected package liburiparser1:amd64. 151s Preparing to unpack .../080-liburiparser1_0.9.7+dfsg-2_amd64.deb ... 151s Unpacking liburiparser1:amd64 (0.9.7+dfsg-2) ... 151s Selecting previously unselected package libkmlbase1:amd64. 151s Preparing to unpack .../081-libkmlbase1_1.3.0-10_amd64.deb ... 151s Unpacking libkmlbase1:amd64 (1.3.0-10) ... 151s Selecting previously unselected package libkmldom1:amd64. 151s Preparing to unpack .../082-libkmldom1_1.3.0-10_amd64.deb ... 151s Unpacking libkmldom1:amd64 (1.3.0-10) ... 151s Selecting previously unselected package libkmlengine1:amd64. 151s Preparing to unpack .../083-libkmlengine1_1.3.0-10_amd64.deb ... 151s Unpacking libkmlengine1:amd64 (1.3.0-10) ... 151s Selecting previously unselected package mysql-common. 151s Preparing to unpack .../084-mysql-common_5.8+1.1.0_all.deb ... 151s Unpacking mysql-common (5.8+1.1.0) ... 151s Selecting previously unselected package libmysqlclient21:amd64. 151s Preparing to unpack .../085-libmysqlclient21_8.0.36-1_amd64.deb ... 151s Unpacking libmysqlclient21:amd64 (8.0.36-1) ... 151s Selecting previously unselected package libhdf5-hl-100:amd64. 151s Preparing to unpack .../086-libhdf5-hl-100_1.10.10+repack-3ubuntu1_amd64.deb ... 151s Unpacking libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 151s Selecting previously unselected package libnetcdf19:amd64. 151s Preparing to unpack .../087-libnetcdf19_1%3a4.9.2-3ubuntu1_amd64.deb ... 151s Unpacking libnetcdf19:amd64 (1:4.9.2-3ubuntu1) ... 151s Selecting previously unselected package libltdl7:amd64. 151s Preparing to unpack .../088-libltdl7_2.4.7-7_amd64.deb ... 151s Unpacking libltdl7:amd64 (2.4.7-7) ... 151s Selecting previously unselected package libodbc2:amd64. 151s Preparing to unpack .../089-libodbc2_2.3.12-1_amd64.deb ... 151s Unpacking libodbc2:amd64 (2.3.12-1) ... 151s Selecting previously unselected package unixodbc-common. 151s Preparing to unpack .../090-unixodbc-common_2.3.12-1_all.deb ... 151s Unpacking unixodbc-common (2.3.12-1) ... 151s Selecting previously unselected package libodbcinst2:amd64. 151s Preparing to unpack .../091-libodbcinst2_2.3.12-1_amd64.deb ... 151s Unpacking libodbcinst2:amd64 (2.3.12-1) ... 151s Selecting previously unselected package libogdi4.1. 151s Preparing to unpack .../092-libogdi4.1_4.1.1+ds-1_amd64.deb ... 151s Unpacking libogdi4.1 (4.1.1+ds-1) ... 151s Selecting previously unselected package libopenjp2-7:amd64. 151s Preparing to unpack .../093-libopenjp2-7_2.5.0-2_amd64.deb ... 151s Unpacking libopenjp2-7:amd64 (2.5.0-2) ... 151s Selecting previously unselected package liblcms2-2:amd64. 151s Preparing to unpack .../094-liblcms2-2_2.14-2_amd64.deb ... 151s Unpacking liblcms2-2:amd64 (2.14-2) ... 151s Selecting previously unselected package libpoppler134:amd64. 151s Preparing to unpack .../095-libpoppler134_24.02.0-1ubuntu2_amd64.deb ... 151s Unpacking libpoppler134:amd64 (24.02.0-1ubuntu2) ... 151s Selecting previously unselected package libpq5:amd64. 151s Preparing to unpack .../096-libpq5_16.2-1_amd64.deb ... 151s Unpacking libpq5:amd64 (16.2-1) ... 151s Selecting previously unselected package libqhull-r8.0:amd64. 151s Preparing to unpack .../097-libqhull-r8.0_2020.2-6_amd64.deb ... 151s Unpacking libqhull-r8.0:amd64 (2020.2-6) ... 151s Selecting previously unselected package librttopo1:amd64. 151s Preparing to unpack .../098-librttopo1_1.1.0-3_amd64.deb ... 151s Unpacking librttopo1:amd64 (1.1.0-3) ... 151s Selecting previously unselected package libspatialite8:amd64. 151s Preparing to unpack .../099-libspatialite8_5.1.0-1_amd64.deb ... 151s Unpacking libspatialite8:amd64 (5.1.0-1) ... 151s Selecting previously unselected package libxerces-c3.2:amd64. 151s Preparing to unpack .../100-libxerces-c3.2_3.2.4+debian-1.1_amd64.deb ... 151s Unpacking libxerces-c3.2:amd64 (3.2.4+debian-1.1) ... 151s Selecting previously unselected package libgdal34:amd64. 151s Preparing to unpack .../101-libgdal34_3.8.4+dfsg-1_amd64.deb ... 151s Unpacking libgdal34:amd64 (3.8.4+dfsg-1) ... 151s Selecting previously unselected package libgraphite2-3:amd64. 151s Preparing to unpack .../102-libgraphite2-3_1.3.14-2_amd64.deb ... 151s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 151s Selecting previously unselected package libharfbuzz0b:amd64. 151s Preparing to unpack .../103-libharfbuzz0b_8.3.0-2_amd64.deb ... 151s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 151s Selecting previously unselected package x11-common. 151s Preparing to unpack .../104-x11-common_1%3a7.7+23ubuntu2_all.deb ... 151s Unpacking x11-common (1:7.7+23ubuntu2) ... 151s Selecting previously unselected package libice6:amd64. 151s Preparing to unpack .../105-libice6_2%3a1.0.10-1build2_amd64.deb ... 151s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 151s Selecting previously unselected package libthai-data. 151s Preparing to unpack .../106-libthai-data_0.1.29-2_all.deb ... 151s Unpacking libthai-data (0.1.29-2) ... 152s Selecting previously unselected package libthai0:amd64. 152s Preparing to unpack .../107-libthai0_0.1.29-2_amd64.deb ... 152s Unpacking libthai0:amd64 (0.1.29-2) ... 152s Selecting previously unselected package libpango-1.0-0:amd64. 152s Preparing to unpack .../108-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 152s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 152s Selecting previously unselected package libpangoft2-1.0-0:amd64. 152s Preparing to unpack .../109-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 152s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 152s Selecting previously unselected package libpangocairo-1.0-0:amd64. 152s Preparing to unpack .../110-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 152s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 152s Selecting previously unselected package libpaper1:amd64. 152s Preparing to unpack .../111-libpaper1_1.1.29_amd64.deb ... 152s Unpacking libpaper1:amd64 (1.1.29) ... 152s Selecting previously unselected package libpaper-utils. 152s Preparing to unpack .../112-libpaper-utils_1.1.29_amd64.deb ... 152s Unpacking libpaper-utils (1.1.29) ... 152s Selecting previously unselected package libsm6:amd64. 152s Preparing to unpack .../113-libsm6_2%3a1.2.3-1build2_amd64.deb ... 152s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 152s Selecting previously unselected package libtcl8.6:amd64. 152s Preparing to unpack .../114-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 152s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 152s Selecting previously unselected package libxft2:amd64. 152s Preparing to unpack .../115-libxft2_2.3.6-1_amd64.deb ... 152s Unpacking libxft2:amd64 (2.3.6-1) ... 152s Selecting previously unselected package libxss1:amd64. 152s Preparing to unpack .../116-libxss1_1%3a1.2.3-1build2_amd64.deb ... 152s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 152s Selecting previously unselected package libtk8.6:amd64. 152s Preparing to unpack .../117-libtk8.6_8.6.14-1_amd64.deb ... 152s Unpacking libtk8.6:amd64 (8.6.14-1) ... 152s Selecting previously unselected package libudunits2-data. 152s Preparing to unpack .../118-libudunits2-data_2.2.28-7_all.deb ... 152s Unpacking libudunits2-data (2.2.28-7) ... 152s Selecting previously unselected package libudunits2-0. 152s Preparing to unpack .../119-libudunits2-0_2.2.28-7_amd64.deb ... 152s Unpacking libudunits2-0 (2.2.28-7) ... 152s Selecting previously unselected package libxt6:amd64. 152s Preparing to unpack .../120-libxt6_1%3a1.2.1-1.1_amd64.deb ... 152s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 152s Selecting previously unselected package zip. 152s Preparing to unpack .../121-zip_3.0-13_amd64.deb ... 152s Unpacking zip (3.0-13) ... 152s Selecting previously unselected package unzip. 152s Preparing to unpack .../122-unzip_6.0-28ubuntu3_amd64.deb ... 152s Unpacking unzip (6.0-28ubuntu3) ... 152s Selecting previously unselected package xdg-utils. 152s Preparing to unpack .../123-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 152s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 152s Selecting previously unselected package r-base-core. 152s Preparing to unpack .../124-r-base-core_4.3.2-1build1_amd64.deb ... 152s Unpacking r-base-core (4.3.2-1build1) ... 152s Selecting previously unselected package r-cran-littler. 152s Preparing to unpack .../125-r-cran-littler_0.3.19-1_amd64.deb ... 152s Unpacking r-cran-littler (0.3.19-1) ... 152s Selecting previously unselected package littler. 152s Preparing to unpack .../126-littler_0.3.19-1_all.deb ... 152s Unpacking littler (0.3.19-1) ... 152s Selecting previously unselected package r-cran-boot. 152s Preparing to unpack .../127-r-cran-boot_1.3-30-1_all.deb ... 152s Unpacking r-cran-boot (1.3-30-1) ... 153s Selecting previously unselected package r-cran-mass. 153s Preparing to unpack .../128-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 153s Unpacking r-cran-mass (7.3-60.0.1-1) ... 153s Selecting previously unselected package r-cran-class. 153s Preparing to unpack .../129-r-cran-class_7.3-22-2_amd64.deb ... 153s Unpacking r-cran-class (7.3-22-2) ... 153s Selecting previously unselected package r-cran-proxy. 153s Preparing to unpack .../130-r-cran-proxy_0.4-27-1_amd64.deb ... 153s Unpacking r-cran-proxy (0.4-27-1) ... 153s Selecting previously unselected package r-cran-e1071. 153s Preparing to unpack .../131-r-cran-e1071_1.7-14-1_amd64.deb ... 153s Unpacking r-cran-e1071 (1.7-14-1) ... 153s Selecting previously unselected package r-cran-kernsmooth. 153s Preparing to unpack .../132-r-cran-kernsmooth_2.23-22-1_amd64.deb ... 153s Unpacking r-cran-kernsmooth (2.23-22-1) ... 153s Selecting previously unselected package r-cran-classint. 153s Preparing to unpack .../133-r-cran-classint_0.4-10+dfsg-1_amd64.deb ... 153s Unpacking r-cran-classint (0.4-10+dfsg-1) ... 153s Selecting previously unselected package r-cran-lattice. 153s Preparing to unpack .../134-r-cran-lattice_0.22-5-1_amd64.deb ... 153s Unpacking r-cran-lattice (0.22-5-1) ... 153s Selecting previously unselected package r-cran-coda. 153s Preparing to unpack .../135-r-cran-coda_0.19-4.1-1_all.deb ... 153s Unpacking r-cran-coda (0.19-4.1-1) ... 153s Selecting previously unselected package r-cran-codetools. 153s Preparing to unpack .../136-r-cran-codetools_0.2-19-1_all.deb ... 153s Unpacking r-cran-codetools (0.2-19-1) ... 153s Selecting previously unselected package r-cran-dbi. 153s Preparing to unpack .../137-r-cran-dbi_1.2.2-1_all.deb ... 153s Unpacking r-cran-dbi (1.2.2-1) ... 153s Selecting previously unselected package r-cran-deldir. 153s Preparing to unpack .../138-r-cran-deldir_2.0-4-1_amd64.deb ... 153s Unpacking r-cran-deldir (2.0-4-1) ... 153s Selecting previously unselected package r-cran-foreign. 153s Preparing to unpack .../139-r-cran-foreign_0.8.86-1_amd64.deb ... 153s Unpacking r-cran-foreign (0.8.86-1) ... 153s Selecting previously unselected package r-cran-learnbayes. 153s Preparing to unpack .../140-r-cran-learnbayes_2.15.1-4build1_all.deb ... 153s Unpacking r-cran-learnbayes (2.15.1-4build1) ... 153s Selecting previously unselected package r-cran-magrittr. 153s Preparing to unpack .../141-r-cran-magrittr_2.0.3-1_amd64.deb ... 153s Unpacking r-cran-magrittr (2.0.3-1) ... 153s Selecting previously unselected package r-cran-matrix. 153s Preparing to unpack .../142-r-cran-matrix_1.6-5-1_amd64.deb ... 153s Unpacking r-cran-matrix (1.6-5-1) ... 153s Selecting previously 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80062 files and directories currently installed.) 163s Preparing to unpack .../2-autopkgtest-satdep.deb ... 163s Unpacking autopkgtest-satdep (0) ... 163s Setting up autopkgtest-satdep (0) ... 165s (Reading database ... 80062 files and directories currently installed.) 165s Removing autopkgtest-satdep (0) ... 165s autopkgtest [12:36:05]: test run-unit-test: [----------------------- 165s BEGIN TEST donttestexamples.R 165s 165s R version 4.3.2 (2023-10-31) -- "Eye Holes" 165s Copyright (C) 2023 The R Foundation for Statistical Computing 165s Platform: x86_64-pc-linux-gnu (64-bit) 165s 165s R is free software and comes with ABSOLUTELY NO WARRANTY. 165s You are welcome to redistribute it under certain conditions. 165s Type 'license()' or 'licence()' for distribution details. 165s 165s R is a collaborative project with many contributors. 165s Type 'contributors()' for more information and 165s 'citation()' on how to cite R or R packages in publications. 165s 165s Type 'demo()' for some demos, 'help()' for on-line help, or 165s 'help.start()' for an HTML browser interface to help. 165s Type 'q()' to quit R. 165s 165s > library(prabclus) 165s Loading required package: MASS 165s Loading required package: mclust 165s Package 'mclust' version 6.0.1 165s Type 'citation("mclust")' for citing this R package in publications. 165s > 165s > # example(prabclust) 165s > data(kykladspecreg) 165s > data(nb) 165s > set.seed(1234) 165s > x <- prabinit(prabmatrix=kykladspecreg, neighborhood=nb) 165s > # If you want to use your own ASCII data files, use 165s > # x <- prabinit(file="path/prabmatrixfile", 165s > # neighborhood="path/neighborhoodfile") 165s > print(prabclust(x)) 165s * Clustered presence-absence matrix * 165s 165s Clustered: 4 -dim. MDS result from method classical 165s 165s Noise-detector NNclean has been used with k= 2 165s NNclean is explained in S. Byers and A. E. Raftery, JASA 95 (1998), 781-794 165s A Normal mixture model with noise component (mclust) has been used. 165s Mixture component memberships: 165s [1] 0 1 0 3 3 7 6 0 8 0 3 0 0 4 1 6 6 7 0 0 0 7 4 1 4 0 6 5 2 1 2 5 0 6 1 0 0 1 165s [39] 0 7 1 3 2 2 5 0 1 2 3 1 8 0 0 4 5 2 8 4 0 0 4 1 5 8 0 2 3 0 0 2 0 1 8 4 0 7 165s [77] 3 5 0 6 165s 165s Clustering (N denotes noise or one-point components): 165s [1] "N" "1" "N" "3" "3" "7" "6" "N" "8" "N" "3" "N" "N" "4" "1" "6" "6" "7" "N" 165s [20] "N" "N" "7" "4" "1" "4" "N" "6" "5" "2" "1" "2" "5" "N" "6" "1" "N" "N" "1" 165s [39] "N" "7" "1" "3" "2" "2" "5" "N" "1" "2" "3" "1" "8" "N" "N" "4" "5" "2" "8" 165s [58] "4" "N" "N" "4" "1" "5" "8" "N" "2" "3" "N" "N" "2" "N" "1" "8" "4" "N" "7" 165s [77] "3" "5" "N" "6" 165s > 165s > # Here is an example for species delimitation with codominant markers; 165s > # only 50 individuals were used in order to have a fast example. 165s > data(tetragonula) 165s > ta <- alleleconvert(strmatrix=tetragonula[1:50,]) 165s > tai <- alleleinit(allelematrix=ta) 165s > print(prabclust(tai)) 165s * Clustered presence-absence matrix * 165s 165s Clustered: 4 -dim. MDS result from method classical 165s 165s Noise-detector NNclean has been used with k= 2 165s NNclean is explained in S. Byers and A. E. Raftery, JASA 95 (1998), 781-794 165s A Normal mixture model with noise component (mclust) has been used. 165s Mixture component memberships: 165s [1] 2 2 1 1 1 1 1 2 2 1 1 1 2 2 2 1 2 1 2 1 2 2 1 2 1 2 2 2 1 1 1 1 2 1 2 3 0 3 165s [39] 0 0 0 3 3 3 3 0 3 3 3 3 165s 165s Clustering (N denotes noise or one-point components): 165s [1] "2" "2" "1" "1" "1" "1" "1" "2" "2" "1" "1" "1" "2" "2" "2" "1" "2" "1" "2" 165s [20] "1" "2" "2" "1" "2" "1" "2" "2" "2" "1" "1" "1" "1" "2" "1" "2" "3" "N" "3" 165s [39] "N" "N" "N" "3" "3" "3" "3" "N" "3" "3" "3" "3" 165s > 165s > # Here is an example for species delimitation with dominant markers; 165s > # only 50 individuals were used in order to have a fast example. 165s > # You may want to use stressvals to choose mdsdim. 165s > data(veronica) 165s > vei <- prabinit(prabmatrix=veronica[1:50,],distance="jaccard") 165s > print(prabclust(vei,mdsmethod="kruskal",mdsdim=3)) 165s initial value 28.163173 165s iter 5 value 20.897590 165s iter 10 value 19.154545 165s iter 15 value 18.814679 165s iter 20 value 18.493361 165s iter 20 value 18.475223 165s final value 18.228921 165s converged 166s * Clustered presence-absence matrix * 166s 166s Clustered: 3 -dim. MDS result from method kruskal 166s 166s Noise-detector NNclean has been used with k= 2 166s NNclean is explained in S. Byers and A. E. Raftery, JASA 95 (1998), 781-794 166s A Normal mixture model with noise component (mclust) has been used. 166s Mixture component memberships: 166s [1] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 166s [39] 1 0 0 1 1 1 1 1 1 0 1 0 166s 166s Clustering (N denotes noise or one-point components): 166s [1] "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" 166s [20] "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" "N" "1" "1" "1" "1" "1" "1" "1" "1" 166s [39] "1" "N" "N" "1" "1" "1" "1" "1" "1" "N" "1" "N" 166s > 166s > # example(crmatrix) 166s > options(digits=3) 166s > data(kykladspecreg) 166s > data(nb) 166s > set.seed(1234) 166s > x <- prabinit(prabmatrix=kykladspecreg, neighborhood=nb) 166s > xc <- prabclust(x) 166s > 166s > crmatrix(x,xc) 166s [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12] [,13] 166s [1,] 0 0 0 1 0 0 0 0 0 0 0 0 0 166s [2,] 0 0 0 0 0 0 0 0 0 1 2 2 2 166s [3,] 0 0 0 0 0 0 0 1 0 1 0 0 0 166s [4,] 0 0 0 0 1 6 2 0 1 1 0 0 0 166s [5,] 0 0 0 0 0 0 0 0 0 0 0 0 0 166s [6,] 0 0 0 0 0 0 0 0 0 0 0 0 0 166s [7,] 0 0 0 0 0 0 0 0 0 0 0 0 0 166s [8,] 5 4 1 0 0 0 0 0 2 0 0 0 0 166s [9,] 10 10 3 3 5 5 5 9 7 10 3 1 5 166s [,14] [,15] [,16] [,17] [,18] [,19] [,20] [,21] [,22] [,23] [,24] [,25] 166s [1,] 0 0 0 0 0 0 0 0 0 0 0 0 166s [2,] 1 1 0 1 0 0 0 0 0 0 2 0 166s [3,] 1 2 1 1 0 0 5 1 2 5 2 2 166s [4,] 0 0 0 0 0 1 0 0 0 0 0 0 166s [5,] 0 0 0 0 0 0 0 0 0 0 0 0 166s [6,] 0 0 0 0 0 0 0 0 0 0 0 0 166s [7,] 0 0 0 0 0 0 0 0 0 0 0 0 166s [8,] 0 0 0 0 0 0 0 0 0 0 0 0 166s [9,] 9 8 7 6 6 9 11 3 5 9 6 8 166s [,26] [,27] [,28] [,29] [,30] [,31] [,32] [,33] [,34] 166s [1,] 0 0 7 8 3 0 0 0 0 166s [2,] 2 0 0 0 0 0 0 0 0 166s [3,] 2 0 0 0 0 0 0 0 0 166s [4,] 0 0 0 0 0 0 0 0 0 166s [5,] 0 6 0 0 0 0 0 0 0 166s [6,] 0 0 0 0 3 4 2 6 0 166s [7,] 0 5 3 5 0 0 0 0 0 166s [8,] 0 0 0 0 0 0 0 0 0 166s [9,] 5 8 6 8 5 6 2 7 4 166s > crmatrix(x,xc, percentages=TRUE) 166s [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12] 166s [1,] 0.0 0.0 0.00 0.0909 0.000 0.000 0.000 0.000 0.000 0.000 0.00 0.00 166s [2,] 0.0 0.0 0.00 0.0000 0.000 0.000 0.000 0.000 0.000 0.125 0.25 0.25 166s [3,] 0.0 0.0 0.00 0.0000 0.000 0.000 0.000 0.143 0.000 0.143 0.00 0.00 166s [4,] 0.0 0.0 0.00 0.0000 0.143 0.857 0.286 0.000 0.143 0.143 0.00 0.00 166s [5,] 0.0 0.0 0.00 0.0000 0.000 0.000 0.000 0.000 0.000 0.000 0.00 0.00 166s [6,] 0.0 0.0 0.00 0.0000 0.000 0.000 0.000 0.000 0.000 0.000 0.00 0.00 166s [7,] 0.0 0.0 0.00 0.0000 0.000 0.000 0.000 0.000 0.000 0.000 0.00 0.00 166s [8,] 1.0 0.8 0.20 0.0000 0.000 0.000 0.000 0.000 0.400 0.000 0.00 0.00 166s [9,] 0.4 0.4 0.12 0.1200 0.200 0.200 0.200 0.360 0.280 0.400 0.12 0.04 166s [,13] [,14] [,15] [,16] [,17] [,18] [,19] [,20] [,21] [,22] [,23] [,24] 166s [1,] 0.00 0.000 0.000 0.000 0.000 0.00 0.000 0.000 0.000 0.000 0.000 0.000 166s [2,] 0.25 0.125 0.125 0.000 0.125 0.00 0.000 0.000 0.000 0.000 0.000 0.250 166s [3,] 0.00 0.143 0.286 0.143 0.143 0.00 0.000 0.714 0.143 0.286 0.714 0.286 166s [4,] 0.00 0.000 0.000 0.000 0.000 0.00 0.143 0.000 0.000 0.000 0.000 0.000 166s [5,] 0.00 0.000 0.000 0.000 0.000 0.00 0.000 0.000 0.000 0.000 0.000 0.000 166s [6,] 0.00 0.000 0.000 0.000 0.000 0.00 0.000 0.000 0.000 0.000 0.000 0.000 166s [7,] 0.00 0.000 0.000 0.000 0.000 0.00 0.000 0.000 0.000 0.000 0.000 0.000 166s [8,] 0.00 0.000 0.000 0.000 0.000 0.00 0.000 0.000 0.000 0.000 0.000 0.000 166s [9,] 0.20 0.360 0.320 0.280 0.240 0.24 0.360 0.440 0.120 0.200 0.360 0.240 166s [,25] [,26] [,27] [,28] [,29] [,30] [,31] [,32] [,33] [,34] 166s [1,] 0.000 0.000 0.00 0.636 0.727 0.273 0.000 0.000 0.00 0.00 166s [2,] 0.000 0.250 0.00 0.000 0.000 0.000 0.000 0.000 0.00 0.00 166s [3,] 0.286 0.286 0.00 0.000 0.000 0.000 0.000 0.000 0.00 0.00 166s [4,] 0.000 0.000 0.00 0.000 0.000 0.000 0.000 0.000 0.00 0.00 166s [5,] 0.000 0.000 1.00 0.000 0.000 0.000 0.000 0.000 0.00 0.00 166s [6,] 0.000 0.000 0.00 0.000 0.000 0.500 0.667 0.333 1.00 0.00 166s [7,] 0.000 0.000 1.00 0.600 1.000 0.000 0.000 0.000 0.00 0.00 166s [8,] 0.000 0.000 0.00 0.000 0.000 0.000 0.000 0.000 0.00 0.00 166s [9,] 0.320 0.200 0.32 0.240 0.320 0.200 0.240 0.080 0.28 0.16 166s > 166s > 166s > # example(lociplots) 166s > options(digits=4) 166s > data(veronica) 166s > vei <- prabinit(prabmatrix=veronica[1:50,],distance="jaccard") 166s > ppv <- prabclust(vei) 166s > veloci <- prabinit(prabmatrix=veronica[1:50,],rows.are.species=FALSE) 166s > velociclust <- prabclust(veloci,nnk=0) 166s > lociplots(ppv,velociclust$clustering,veloci,lcluster=3) 166s $locfreq 166s [1] 0.13333 0.26667 0.13333 0.20000 0.13333 0.13333 0.40000 0.20000 0.13333 166s [10] 0.13333 0.06667 0.00000 0.00000 0.20000 0.00000 0.00000 0.06667 0.00000 166s [19] 0.00000 0.00000 0.06667 0.00000 0.06667 0.00000 0.00000 0.00000 0.13333 166s [28] 0.00000 0.00000 0.26667 0.26667 0.33333 0.06667 0.13333 0.13333 0.20000 166s [37] 0.13333 0.13333 0.20000 0.00000 0.00000 0.06667 0.00000 0.06667 0.06667 166s [46] 0.06667 0.06667 0.33333 0.20000 0.13333 166s 166s $locfreqmin 166s [1] 0 0 0 0 166s 166s $locfreqmax 166s [1] 0.33333 0.40000 0.26667 0.06667 166s 166s $locfreqmean 166s [1] 0.14167 0.14510 0.10769 0.02778 166s 166s > 166s > 166s > # Results: 166s > 166s > # R version 3.1.2 (2014-10-31) -- "Pumpkin Helmet" 166s > # Copyright (C) 2014 The R Foundation for Statistical Computing 166s > # Platform: x86_64-pc-linux-gnu (64-bit) 166s > # 166s > # R is free software and comes with ABSOLUTELY NO WARRANTY. 166s > # You are welcome to redistribute it under certain conditions. 166s > # Type 'license()' or 'licence()' for distribution details. 166s > # 166s > # R is a collaborative project with many contributors. 166s > # Type 'contributors()' for more information and 166s > # 'citation()' on how to cite R or R packages in publications. 166s > # 166s > # Type 'demo()' for some demos, 'help()' for on-line help, or 166s > # 'help.start()' for an HTML browser interface to help. 166s > # Type 'q()' to quit R. 166s > # 166s > # > library(prabclus) 166s > # Loading required package: MASS 166s > # Loading required package: mclust 166s > # Package 'mclust' version 4.4 166s > # Type 'citation("mclust")' for citing this R package in publications. 166s > # > 166s > # > # example(prabclust) 166s > # > data(kykladspecreg) 166s > # > data(nb) 166s > # > set.seed(1234) 166s > # > x <- prabinit(prabmatrix=kykladspecreg, neighborhood=nb) 166s > # > # If you want to use your own ASCII data files, use 166s > # > # x <- prabinit(file="path/prabmatrixfile", 166s > # > # neighborhood="path/neighborhoodfile") 166s > # > print(prabclust(x)) 166s > # * Clustered presence-absence matrix * 166s > # 166s > # Clustered: 4 -dim. MDS result from method classical 166s > # 166s > # Noise-detector NNclean has been used with k= 2 166s > # NNclean is explained in S. Byers and A. E. Raftery, JASA 95 (1998), 781-794 166s > # A Normal mixture model with noise component (mclust) has been used. 166s > # Mixture component memberships: 166s > # [1] 0 1 0 2 2 8 6 0 7 0 2 0 0 4 1 6 6 8 4 0 0 0 4 1 4 0 6 5 3 1 3 5 0 6 1 0 0 1 166s > # [39] 0 8 1 2 3 3 5 0 1 3 2 1 7 0 0 4 5 3 7 4 0 0 4 1 5 7 0 3 2 0 2 3 0 1 7 4 0 0 166s > # [77] 2 5 0 6 166s > # 166s > # Clustering (N denotes noise or one-point components): 166s > # [1] "N" "1" "N" "2" "2" "8" "6" "N" "7" "N" "2" "N" "N" "4" "1" "6" "6" "8" "4" 166s > # [20] "N" "N" "N" "4" "1" "4" "N" "6" "5" "3" "1" "3" "5" "N" "6" "1" "N" "N" "1" 166s > # [39] "N" "8" "1" "2" "3" "3" "5" "N" "1" "3" "2" "1" "7" "N" "N" "4" "5" "3" "7" 166s > # [58] "4" "N" "N" "4" "1" "5" "7" "N" "3" "2" "N" "2" "3" "N" "1" "7" "4" "N" "N" 166s > # [77] "2" "5" "N" "6" 166s > # > 166s > # > # Here is an example for species delimitation with codominant markers; 166s > # > # only 50 individuals were used in order to have a fast example. 166s > # > data(tetragonula) 166s > # > ta <- alleleconvert(strmatrix=tetragonula[1:50,]) 166s > # > tai <- alleleinit(allelematrix=ta) 166s > # > print(prabclust(tai)) 166s > # * Clustered presence-absence matrix * 166s > # 166s > # Clustered: 4 -dim. MDS result from method classical 166s > # 166s > # Noise-detector NNclean has been used with k= 2 166s > # NNclean is explained in S. Byers and A. E. Raftery, JASA 95 (1998), 781-794 166s > # A Normal mixture model with noise component (mclust) has been used. 166s > # Mixture component memberships: 166s > # [1] 2 2 1 1 1 1 1 2 2 1 1 1 2 2 2 1 2 1 2 1 2 2 1 2 1 2 2 2 1 1 1 1 2 1 2 3 0 3 166s > # [39] 0 0 0 3 3 3 3 0 3 3 3 3 166s > # 166s > # Clustering (N denotes noise or one-point components): 166s > # [1] "2" "2" "1" "1" "1" "1" "1" "2" "2" "1" "1" "1" "2" "2" "2" "1" "2" "1" "2" 166s > # [20] "1" "2" "2" "1" "2" "1" "2" "2" "2" "1" "1" "1" "1" "2" "1" "2" "3" "N" "3" 166s > # [39] "N" "N" "N" "3" "3" "3" "3" "N" "3" "3" "3" "3" 166s > # > 166s > # > # Here is an example for species delimitation with dominant markers; 166s > # > # only 50 individuals were used in order to have a fast example. 166s > # > # You may want to use stressvals to choose mdsdim. 166s > # > data(veronica) 166s > # > vei <- prabinit(prabmatrix=veronica[1:50,],distance="jaccard") 166s > # > print(prabclust(vei,mdsmethod="kruskal",mdsdim=3)) 166s > # initial value 28.163173 166s > # iter 5 value 20.897590 166s > # iter 10 value 19.154545 166s > # iter 15 value 18.814679 166s > # iter 20 value 18.493361 166s > # iter 20 value 18.475223 166s > # final value 18.228921 166s > # converged 166s > # * Clustered presence-absence matrix * 166s > # 166s > # Clustered: 3 -dim. MDS result from method kruskal 166s > # 166s > # Noise-detector NNclean has been used with k= 2 166s > # NNclean is explained in S. Byers and A. E. Raftery, JASA 95 (1998), 781-794 166s > # A Normal mixture model with noise component (mclust) has been used. 166s > # Mixture component memberships: 166s > # [1] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 166s > # [39] 1 0 0 1 1 1 1 1 1 0 1 0 166s > # 166s > # Clustering (N denotes noise or one-point components): 166s > # [1] "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" 166s > # [20] "1" "1" "1" "1" "1" "1" "1" "1" "1" "1" "N" "1" "1" "1" "1" "1" "1" "1" "1" 166s > # [39] "1" "N" "N" "1" "1" "1" "1" "1" "1" "N" "1" "N" 166s > # > 166s > # > # example(crmatrix) 166s > # > options(digits=3) 166s > # > data(kykladspecreg) 166s > # > data(nb) 166s > # > set.seed(1234) 166s > # > x <- prabinit(prabmatrix=kykladspecreg, neighborhood=nb) 166s > # > xc <- prabclust(x) 166s > # > 166s > # > crmatrix(x,xc) 166s > # [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12] [,13] 166s > # [1,] 0 0 0 1 0 0 0 0 0 0 0 0 0 166s > # [2,] 0 0 0 0 0 0 0 1 0 1 0 0 0 166s > # [3,] 0 0 0 0 0 0 0 0 0 1 2 2 2 166s > # [4,] 1 0 0 0 2 7 3 0 1 2 0 0 1 166s > # [5,] 0 0 0 0 0 0 0 0 0 0 0 0 0 166s > # [6,] 0 0 0 0 0 0 0 0 0 0 0 0 0 166s > # [7,] 5 4 1 0 0 0 0 0 2 0 0 0 0 166s > # [8,] 0 0 0 0 0 0 0 0 0 0 0 0 0 166s > # [9,] 9 10 3 3 4 4 4 9 7 9 3 1 4 166s > # [,14] [,15] [,16] [,17] [,18] [,19] [,20] [,21] [,22] [,23] [,24] [,25] 166s > # [1,] 0 0 0 0 0 0 0 0 0 0 0 0 166s > # [2,] 2 3 2 2 0 1 6 1 3 6 2 2 166s > # [3,] 1 1 0 1 0 0 0 0 0 0 2 0 166s > # [4,] 0 0 0 0 0 1 0 0 0 1 0 0 166s > # [5,] 0 0 0 0 0 0 0 0 0 0 0 0 166s > # [6,] 0 0 0 0 0 0 0 0 0 0 0 0 166s > # [7,] 0 0 0 0 0 0 0 0 0 0 0 0 166s > # [8,] 0 0 0 0 0 0 0 0 0 0 0 0 166s > # [9,] 8 7 6 5 6 8 10 3 4 7 6 8 166s > # [,26] [,27] [,28] [,29] [,30] [,31] [,32] [,33] [,34] 166s > # [1,] 0 0 7 8 3 0 0 0 0 166s > # [2,] 2 0 0 0 0 0 0 0 0 166s > # [3,] 2 0 0 0 0 0 0 0 0 166s > # [4,] 0 0 0 0 0 0 0 0 0 166s > # [5,] 0 6 0 0 0 0 0 0 0 166s > # [6,] 0 0 0 0 3 4 2 6 0 166s > # [7,] 0 0 0 0 0 0 0 0 0 166s > # [8,] 0 3 3 3 0 0 0 0 0 166s > # [9,] 5 10 6 10 5 6 2 7 4 166s > # > crmatrix(x,xc, percentages=TRUE) 166s > # [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12] 166s > # [1,] 0.000 0.0 0.00 0.0909 0.00 0.000 0.000 0.000 0.000 0.000 0.00 0.00 166s > # [2,] 0.000 0.0 0.00 0.0000 0.00 0.000 0.000 0.125 0.000 0.125 0.00 0.00 166s > # [3,] 0.000 0.0 0.00 0.0000 0.00 0.000 0.000 0.000 0.000 0.125 0.25 0.25 166s > # [4,] 0.125 0.0 0.00 0.0000 0.25 0.875 0.375 0.000 0.125 0.250 0.00 0.00 166s > # [5,] 0.000 0.0 0.00 0.0000 0.00 0.000 0.000 0.000 0.000 0.000 0.00 0.00 166s > # [6,] 0.000 0.0 0.00 0.0000 0.00 0.000 0.000 0.000 0.000 0.000 0.00 0.00 166s > # [7,] 1.000 0.8 0.20 0.0000 0.00 0.000 0.000 0.000 0.400 0.000 0.00 0.00 166s > # [8,] 0.000 0.0 0.00 0.0000 0.00 0.000 0.000 0.000 0.000 0.000 0.00 0.00 166s > # [9,] 0.360 0.4 0.12 0.1200 0.16 0.160 0.160 0.360 0.280 0.360 0.12 0.04 166s > # [,13] [,14] [,15] [,16] [,17] [,18] [,19] [,20] [,21] [,22] [,23] [,24] 166s > # [1,] 0.000 0.000 0.000 0.00 0.000 0.00 0.000 0.00 0.000 0.000 0.000 0.00 166s > # [2,] 0.000 0.250 0.375 0.25 0.250 0.00 0.125 0.75 0.125 0.375 0.750 0.25 166s > # [3,] 0.250 0.125 0.125 0.00 0.125 0.00 0.000 0.00 0.000 0.000 0.000 0.25 166s > # [4,] 0.125 0.000 0.000 0.00 0.000 0.00 0.125 0.00 0.000 0.000 0.125 0.00 166s > # [5,] 0.000 0.000 0.000 0.00 0.000 0.00 0.000 0.00 0.000 0.000 0.000 0.00 166s > # [6,] 0.000 0.000 0.000 0.00 0.000 0.00 0.000 0.00 0.000 0.000 0.000 0.00 166s > # [7,] 0.000 0.000 0.000 0.00 0.000 0.00 0.000 0.00 0.000 0.000 0.000 0.00 166s > # [8,] 0.000 0.000 0.000 0.00 0.000 0.00 0.000 0.00 0.000 0.000 0.000 0.00 166s > # [9,] 0.160 0.320 0.280 0.24 0.200 0.24 0.320 0.40 0.120 0.160 0.280 0.24 166s > # [,25] [,26] [,27] [,28] [,29] [,30] [,31] [,32] [,33] [,34] 166s > # [1,] 0.00 0.00 0.0 0.636 0.727 0.273 0.000 0.000 0.00 0.00 166s > # [2,] 0.25 0.25 0.0 0.000 0.000 0.000 0.000 0.000 0.00 0.00 166s > # [3,] 0.00 0.25 0.0 0.000 0.000 0.000 0.000 0.000 0.00 0.00 166s > # [4,] 0.00 0.00 0.0 0.000 0.000 0.000 0.000 0.000 0.00 0.00 166s > # [5,] 0.00 0.00 1.0 0.000 0.000 0.000 0.000 0.000 0.00 0.00 166s > # [6,] 0.00 0.00 0.0 0.000 0.000 0.500 0.667 0.333 1.00 0.00 166s > # [7,] 0.00 0.00 0.0 0.000 0.000 0.000 0.000 0.000 0.00 0.00 166s > # [8,] 0.00 0.00 1.0 1.000 1.000 0.000 0.000 0.000 0.00 0.00 166s > # [9,] 0.32 0.20 0.4 0.240 0.400 0.200 0.240 0.080 0.28 0.16 166s > # > 166s > # > 166s > # > # example(lociplots) 166s > # > options(digits=4) 166s > # > data(veronica) 166s > # > vei <- prabinit(prabmatrix=veronica[1:50,],distance="jaccard") 166s > # > ppv <- prabclust(vei) 166s > # > veloci <- prabinit(prabmatrix=veronica[1:50,],rows.are.species=FALSE) 166s > # > velociclust <- prabclust(veloci,nnk=0) 166s > # > lociplots(ppv,velociclust$clustering,veloci,lcluster=3) 166s > # $locfreq 166s > # [1] 0.4737 0.3684 0.4737 0.5263 0.3684 0.4211 0.3684 0.5263 0.5263 0.5263 166s > # [11] 0.6842 0.4211 0.4211 0.5263 0.4211 0.2632 0.4211 0.4737 0.5263 0.4211 166s > # [21] 0.4737 0.4211 0.5263 0.4211 0.6316 0.5263 0.4211 0.4737 0.4211 0.3684 166s > # [31] 0.5263 0.4737 0.4737 0.4211 0.4737 0.5789 0.5263 0.5263 0.4211 0.3684 166s > # [41] 0.2632 0.4211 0.3684 0.4737 0.5263 0.4211 0.4211 0.2632 0.5263 0.5263 166s > # 166s > # $locfreqmin 166s > # [1] 0.2632 0.3684 0.2632 0.4211 166s > # 166s > # $locfreqmax 166s > # [1] 0.5263 0.5263 0.5789 0.6842 166s > # 166s > # $locfreqmean 166s > # [1] 0.3947 0.4520 0.4575 0.5044 166s > # 166s > # > 166s > # > proc.time() 166s > # user system elapsed 166s > # 1.708 0.020 1.729 166s > 166s BEGIN TEST prabclustests.R 166s 166s R version 4.3.2 (2023-10-31) -- "Eye Holes" 166s Copyright (C) 2023 The R Foundation for Statistical Computing 166s Platform: x86_64-pc-linux-gnu (64-bit) 166s 166s R is free software and comes with ABSOLUTELY NO WARRANTY. 166s You are welcome to redistribute it under certain conditions. 166s Type 'license()' or 'licence()' for distribution details. 166s 166s R is a collaborative project with many contributors. 166s Type 'contributors()' for more information and 166s 'citation()' on how to cite R or R packages in publications. 166s 166s Type 'demo()' for some demos, 'help()' for on-line help, or 166s 'help.start()' for an HTML browser interface to help. 166s Type 'q()' to quit R. 166s 166s > library(prabclus) 166s Loading required package: MASS 166s Loading required package: mclust 166s Package 'mclust' version 6.0.1 166s Type 'citation("mclust")' for citing this R package in publications. 166s > options(digits=4) 166s > 166s > data(kykladspecreg) 166s > data(nb) 166s > set.seed(1234) 166s > x <- prabinit(prabmatrix=kykladspecreg, neighborhood=nb) 166s > 166s > p1 <- prabtest(x, times=3, pd=0.35, ignore.richness=TRUE) 166s Simulation run 1 statistics value= 0.5811 166s Simulation run 2 statistics value= 0.4761 166s Simulation run 3 statistics value= 0.5022 166s Data value: 0.408 166s > p2 <- prabtest(x, times=3, pd=0.35, teststat="lcomponent") 166s Simulation run 1 statistics value= 9 166s Simulation run 2 statistics value= 19 166s Simulation run 3 statistics value= 43 166s Data value: 8 166s > p3 <- prabtest(x, times=3, pd=0.35, teststat="isovertice") 166s Simulation run 1 statistics value= 9 167s Simulation run 2 statistics value= 9 167s Simulation run 3 statistics value= 23 167s Data value: 15 167s > p4 <- prabtest(x, times=3, pd=0.35, teststat="nn", sf.sim=TRUE) 167s Simulation run 1 statistics value= 0.3598 167s Simulation run 2 statistics value= 0.3635 167s Simulation run 3 statistics value= 0.3441 167s Data value: 0.3192 167s > p5 <- prabtest(x, times=3, pd=0.35, teststat="inclusions") 167s Simulation run 1 statistics value= 470 167s Simulation run 2 statistics value= 547 167s Simulation run 3 statistics value= 365 167s Data value: 602 167s > summary(p1) 167s * Parametric bootstrap test for presence-absence data * 167s 167s Test statistics: distratio , Tuning constant= 0.25 167s Distance: kulczynski 167s Simulation runs: 3 167s Disjunction parameter for presence-absence pattern: 0.35 167s Rows (regions) richness has been ignored by the null model. 167s Statistics value for original data: 0.408 167s Mean for null data: 0.5198 , range: 0.4761 0.5811 167s p= 0.25 167s > summary(p2) 167s * Parametric bootstrap test for presence-absence data * 167s 167s Test statistics: lcomponent , Tuning constant= 60 167s Distance: kulczynski 167s Simulation runs: 3 167s Disjunction parameter for presence-absence pattern: 0.35 167s Statistics value for original data: 8 167s Mean for null data: 23.67 , range: 9 43 167s p= 0.25 167s > summary(p3) 167s * Parametric bootstrap test for presence-absence data * 167s 167s Test statistics: isovertice , Tuning constant= 80 167s Distance: kulczynski 167s Simulation runs: 3 167s Disjunction parameter for presence-absence pattern: 0.35 167s Statistics value for original data: 15 167s Mean for null data: 13.67 , range: 9 23 167s p= 1 167s > summary(p4) 167s * Parametric bootstrap test for presence-absence data * 167s 167s Test statistics: nn , Tuning constant= 4 167s Distance: kulczynski 167s Simulation runs: 3 167s Disjunction parameter for presence-absence pattern: 0.35 167s Statistics value for original data: 0.3192 167s Mean for null data: 0.3558 , range: 0.3441 0.3635 167s p= 0.25 167s > summary(p5) 167s * Parametric bootstrap test for presence-absence data * 167s 167s Test statistics: inclusions , Tuning constant= NA 167s Distance: kulczynski 167s Simulation runs: 3 167s Disjunction parameter for presence-absence pattern: 0.35 167s Statistics value for original data: 602 167s Mean for null data: 460.7 , range: 365 547 167s p= 0.25 167s > 167s > data(veronica) 167s > vnb <- coord2dist(coordmatrix=veronica.coord[1:50,], cut=20, 167s + file.format="decimal2",neighbors=TRUE) 167s > vei <- prabinit(prabmatrix=veronica[1:50,], 167s + neighborhood=vnb$nblist,nbbetweenregions=FALSE, 167s + distance="jaccard") 167s > print(vei) 167s Presence-absence matrix object with 167s 50 species and 583 regions, 167s including species/individuals neighborhoods and 167s between-species distance matrix of type jaccard . 167s > 167s > library(spdep) 167s Loading required package: spData 167s To access larger datasets in this package, install the spDataLarge 167s package with: `install.packages('spDataLarge', 167s repos='https://nowosad.github.io/drat/', type='source')` 167s Loading required package: sf 167s Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.3.1; sf_use_s2() is TRUE 167s > data(siskiyou) 167s > x <- prabinit(prabmatrix=siskiyou, neighborhood=siskiyou.nb, 167s + distance="logkulczynski") 168s > build.nblist(x) 168s > a1 <- abundtest(x, times=5, p.nb=0.0465) 170s Simulation run 1 statistics value= 0.2931 170s Simulation run 2 statistics value= 0.3109 170s Simulation run 3 statistics value= 0.2936 170s Simulation run 4 statistics value= 0.3119 170s Simulation run 5 statistics value= 0.3048 170s Data value: 0.2789 170s > a2 <- abundtest(x, times=5, p.nb=0.0465, teststat="groups", 170s + groupvector=siskiyou.groups) 171s Simulation run 1 statistics value= 0.4916 172s Simulation run 2 statistics value= 0.5779 172s Simulation run 3 statistics value= 0.5337 172s Simulation run 4 statistics value= 0.5873 172s Simulation run 5 statistics value= 0.617 172s Data value: 0.5864 172s > # These settings are chosen to make the example execution 172s > # faster; usually you will use abundtest(x). 172s > summary(a1) 172s * Parametric bootstrap test for spatial abundance data * 172s 172s Test statistics: distratio , Tuning constant= 0.25 172s Distance: logkulczynski 172s Simulation runs: 5 172s Disjunction parameter for presence-absence pattern: 0.0465 172s Neighborhood parameter lambda for SAR-model: -0.05515 172s Statistics value for original data: 0.2789 172s Mean for null data: 0.3029 , range: 0.2931 0.3119 172s p= 0.1667 172s > summary(a2) 172s * Parametric bootstrap test for spatial abundance data * 172s 172s Test statistics: groups , Tuning constant= NA 172s Distance: logkulczynski 172s Simulation runs: 5 172s Disjunction parameter for presence-absence pattern: 0.0465 172s Neighborhood parameter lambda for SAR-model: -0.05515 172s Mean within group distances for original data: 0.5864 172s Mean of mean within group distances for null data: 0.5615 , range: 0.4916 0.617 172s p= 0.5 172s Group 7 statistics value for original data: 0.7897 172s Group 7 mean for null data: 0.4531 , range: 0.4156 0.4727 172s p= 0.1667 172s Group 16 statistics value for original data: 0.2778 172s Group 16 mean for null data: 0.3438 , range: 0.2231 0.4107 172s p= 0.8333 172s Group 21 statistics value for original data: 1 172s Group 21 mean for null data: 0.6664 , range: 0.3384 1 172s p= 0.5 172s Group 24 statistics value for original data: 0.4815 172s Group 24 mean for null data: 0.3202 , range: 0.2768 0.3746 172s p= 0.1667 172s Group 27 statistics value for original data: 0.353 172s Group 27 mean for null data: 0.6447 , range: 0.3722 1 172s p= 1 172s Group 30 statistics value for original data: 0.2257 172s Group 30 mean for null data: 0.1347 , range: 0.06729 0.1949 172s p= 0.1667 172s Group 33 statistics value for original data: 0.7591 172s Group 33 mean for null data: 0.5463 , range: 0.4448 0.6791 172s p= 0.1667 172s Group 41 statistics value for original data: 0.5354 172s Group 41 mean for null data: 0.4502 , range: 0.3351 0.5298 172s p= 0.1667 172s Group 51 statistics value for original data: 0.7529 172s Group 51 mean for null data: 0.7072 , range: 0.6229 0.859 172s p= 0.5 172s Group 61 statistics value for original data: 0.4842 172s Group 61 mean for null data: 0.6812 , range: 0.4593 1 172s p= 0.5 172s Group 66 statistics value for original data: 0.9123 172s Group 66 mean for null data: 0.9564 , range: 0.8345 1 172s p= 0.8333 172s Group 74 statistics value for original data: 0.8442 172s Group 74 mean for null data: 0.546 , range: 0.3173 1 172s p= 0.3333 172s Group 80 statistics value for original data: 0.2595 172s Group 80 mean for null data: 0.3406 , range: 0.2541 0.3817 172s p= 0.8333 172s Group 88 statistics value for original data: 0.7163 172s Group 88 mean for null data: 0.6213 , range: 0.3689 0.7709 172s p= 0.5 172s Group 96 statistics value for original data: 0.4578 172s Group 96 mean for null data: 0.4455 , range: 0.417 0.4682 172s p= 0.5 172s Group 99 statistics value for original data: 0.4293 172s Group 99 mean for null data: 0.7328 , range: 0.5584 0.8119 172s p= 1 172s Group 103 statistics value for original data: 0.4432 172s Group 103 mean for null data: 0.6986 , range: 0.4646 1 172s p= 1 172s Group 107 statistics value for original data: 0.5259 172s Group 107 mean for null data: 0.808 , range: 0.5826 1 172s p= 1 172s Group 114 statistics value for original data: 0.4325 172s Group 114 mean for null data: 0.4392 , range: 0.3879 0.4892 172s p= 0.6667 172s Group 125 statistics value for original data: 0.6856 172s Group 125 mean for null data: 0.3745 , range: 0.268 0.4779 172s p= 0.1667 172s Group 127 statistics value for original data: 0.2832 172s Group 127 mean for null data: 0.1782 , range: 0.1558 0.2164 172s p= 0.1667 172s Group 140 statistics value for original data: 0.5829 172s Group 140 mean for null data: 0.5161 , range: 0.3774 0.6366 172s p= 0.3333 172s > 172s > options(digits=2) 172s > prab.sarestimate(x) 173s $sar 173s [1] TRUE 173s 173s $intercept 173s (Intercept) 173s 1.1 173s 173s $sigma 173s [1] 1 173s 173s $regeffects 173s region2 region3 region4 region5 region6 173s 0.000 -0.056 0.517 0.682 0.597 0.834 173s 173s $speffects 173s species2 species3 species4 species5 species6 species7 173s 0.0000 -1.0986 -0.4055 -0.4055 -0.1746 -0.1746 0.5186 173s species8 species9 species10 species11 species12 species13 species14 173s 0.1720 -0.3773 2.4585 2.4632 2.3148 0.7966 -0.5523 173s species15 species16 species17 species18 species19 species20 species21 173s -0.9997 2.8542 3.1175 -0.1624 -1.2164 0.8256 0.0025 173s species22 species23 species24 species25 species26 species27 species28 173s -2.0213 -0.6407 2.6430 4.3446 3.3794 2.7244 2.6713 173s species29 species30 species31 species32 species33 species34 species35 173s 2.7303 1.5682 1.8833 2.9410 1.7488 2.9594 2.5965 173s species36 species37 species38 species39 species40 species41 species42 173s 2.7883 1.0393 0.9960 1.4137 1.9796 -1.8561 1.6207 173s species43 species44 species45 species46 species47 species48 species49 173s 1.7423 2.2793 2.0573 2.3259 1.0857 3.3730 3.2701 173s species50 species51 species52 species53 species54 species55 species56 173s 2.7610 2.6443 -0.1027 1.9857 2.3219 -0.3492 -1.0423 173s species57 species58 species59 species60 species61 species62 species63 173s -1.0423 -1.0423 -0.3492 2.1940 -0.6358 -0.4330 -1.3289 173s species64 species65 species66 species67 species68 species69 species70 173s -2.2767 -2.3501 -1.7023 1.3365 1.9931 1.3771 0.7127 173s species71 species72 species73 species74 species75 species76 species77 173s 2.1431 -1.6155 -0.9223 -1.6155 0.4640 -1.6155 1.0236 173s species78 species79 species80 species81 species82 species83 species84 173s -0.5168 -1.6979 -1.6979 -1.0047 -2.5026 1.7620 0.6432 173s species85 species86 species87 species88 species89 species90 species91 173s -2.1138 1.5735 1.3492 1.8530 0.3853 2.6159 -0.2037 173s species92 species93 species94 species95 species96 species97 species98 173s -0.4353 0.1952 -1.5037 0.5223 -0.3940 -1.7803 -1.0871 173s species99 species100 species101 species102 species103 species104 species105 173s -1.7803 -1.8497 0.5645 -0.0720 -0.1926 -0.3926 1.5433 173s species106 species107 species108 species109 species110 species111 species112 173s -0.5872 0.3140 3.4881 1.3971 0.4806 3.2341 -0.4859 173s species113 species114 species115 species116 species117 species118 species119 173s 1.8359 0.2072 -0.7822 1.0575 1.9314 2.2148 -0.5973 173s species120 species121 species122 species123 species124 species125 species126 173s 0.0959 0.7020 -1.6959 -1.0028 -0.4950 0.0299 0.3509 173s species127 species128 species129 species130 species131 species132 species133 173s -0.1855 -0.8416 0.5266 -0.6632 -0.4950 -1.4679 -0.8416 173s species134 species135 species136 species137 species138 species139 species140 173s 0.9045 3.1571 1.6834 -0.3166 -1.2400 -1.2400 -1.2400 173s species141 species142 species143 species144 173s 0.7749 1.2858 -0.3237 -1.2400 173s 173s $lambda 173s lambda 173s -0.078 173s 173s $size 173s [1] 421 173s 173s $nbweight 173s [1] 0.7 173s 173s $lmobject 173s 173s Call: 173s spatialreg::errorsarlm(formula = logabund ~ region + species, 173s data = abundreg, listw = nblistw, method = sarmethod, quiet = quiet, 173s zero.policy = TRUE) 173s Type: error 173s 173s Coefficients: 173s lambda (Intercept) region2 region3 region4 region5 173s -0.0784 1.0986 -0.0563 0.5168 0.6817 0.5973 173s region6 species2 species3 species4 species5 species6 173s 0.8345 -1.0986 -0.4055 -0.4055 -0.1746 -0.1746 173s species7 species8 species9 species10 species11 species12 173s 0.5186 0.1720 -0.3773 2.4585 2.4632 2.3148 173s species13 species14 species15 species16 species17 species18 173s 0.7966 -0.5523 -0.9997 2.8542 3.1175 -0.1624 173s species19 species20 species21 species22 species23 species24 173s -1.2164 0.8256 0.0025 -2.0213 -0.6407 2.6430 173s species25 species26 species27 species28 species29 species30 173s 4.3446 3.3794 2.7244 2.6713 2.7303 1.5682 173s species31 species32 species33 species34 species35 species36 173s 1.8833 2.9410 1.7488 2.9594 2.5965 2.7883 173s species37 species38 species39 species40 species41 species42 173s 1.0393 0.9960 1.4137 1.9796 -1.8561 1.6207 173s species43 species44 species45 species46 species47 species48 173s 1.7423 2.2793 2.0573 2.3259 1.0857 3.3730 173s species49 species50 species51 species52 species53 species54 173s 3.2701 2.7610 2.6443 -0.1027 1.9857 2.3219 173s species55 species56 species57 species58 species59 species60 173s -0.3492 -1.0423 -1.0423 -1.0423 -0.3492 2.1940 173s species61 species62 species63 species64 species65 species66 173s -0.6358 -0.4330 -1.3289 -2.2767 -2.3501 -1.7023 173s species67 species68 species69 species70 species71 species72 173s 1.3365 1.9931 1.3771 0.7127 2.1431 -1.6155 173s species73 species74 species75 species76 species77 species78 173s -0.9223 -1.6155 0.4640 -1.6155 1.0236 -0.5168 173s species79 species80 species81 species82 species83 species84 173s -1.6979 -1.6979 -1.0047 -2.5026 1.7620 0.6432 173s species85 species86 species87 species88 species89 species90 173s -2.1138 1.5735 1.3492 1.8530 0.3853 2.6159 173s species91 species92 species93 species94 species95 species96 173s -0.2037 -0.4353 0.1952 -1.5037 0.5223 -0.3940 173s species97 species98 species99 species100 species101 species102 173s -1.7803 -1.0871 -1.7803 -1.8497 0.5645 -0.0720 173s species103 species104 species105 species106 species107 species108 173s -0.1926 -0.3926 1.5433 -0.5872 0.3140 3.4881 173s species109 species110 species111 species112 species113 species114 173s 1.3971 0.4806 3.2341 -0.4859 1.8359 0.2072 173s species115 species116 species117 species118 species119 species120 173s -0.7822 1.0575 1.9314 2.2148 -0.5973 0.0959 173s species121 species122 species123 species124 species125 species126 173s 0.7020 -1.6959 -1.0028 -0.4950 0.0299 0.3509 173s species127 species128 species129 species130 species131 species132 173s -0.1855 -0.8416 0.5266 -0.6632 -0.4950 -1.4679 173s species133 species134 species135 species136 species137 species138 173s -0.8416 0.9045 3.1571 1.6834 -0.3166 -1.2400 173s species139 species140 species141 species142 species143 species144 173s -1.2400 -1.2400 0.7749 1.2858 -0.3237 -1.2400 173s 173s Log likelihood: -597 173s 173s > regpop.sar(x, p.nb=0.046) 174s [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12] [,13] 174s [1,] 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.00 0 0 0 0.0 174s [2,] 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.87 0 0 0 0.0 174s [3,] 0.0 0.0 0.0 0.0 0.0 5.5 0.0 1.5 20.79 25 12 34 0.0 174s [4,] 0.0 1.7 0.0 0.0 2.7 18.2 0.0 2.1 0.00 23 0 155 42.2 174s [5,] 4.5 0.0 4.1 0.0 5.7 0.0 3.7 0.0 0.00 0 29 99 9.1 174s [6,] 0.0 0.0 0.0 3.5 0.0 0.0 78.4 0.0 0.00 0 0 0 13.1 174s [,14] [,15] [,16] [,17] [,18] [,19] [,20] [,21] [,22] [,23] [,24] [,25] 174s [1,] 0.0 0.00 46 0 1.6 4.3 0.00 4.4 0.028 0.74 76 0 174s [2,] 17.3 0.00 79 66 0.9 2.0 0.00 1.4 0.187 2.97 44 75 174s [3,] 2.1 0.00 79 16 7.5 52.3 3.37 10.6 0.258 4.15 96 5493 174s [4,] 16.0 6.72 76 256 4.3 0.0 8.84 1.5 0.308 7.90 81 54 174s [5,] 0.0 5.52 0 237 0.0 0.0 0.71 0.0 0.000 0.00 19 414 174s [6,] 0.0 0.39 0 0 0.0 0.0 102.84 0.0 0.000 0.00 0 246 174s [,26] [,27] [,28] [,29] [,30] [,31] [,32] [,33] [,34] [,35] [,36] [,37] 174s [1,] 0 0 11 10.0 14.1 0.0 0.0 59.2 230 84 90 0.0 174s [2,] 126 63 94 9.4 20.1 54.3 120.7 6.3 107 70 34 6.8 174s [3,] 232 509 26 210.3 3.2 173.4 8.6 39.3 303 225 23 11.6 174s [4,] 89 20 32 23.8 32.9 64.1 80.0 29.1 486 111 71 15.8 174s [5,] 51 13 25 81.2 42.1 33.3 84.2 13.1 19 18 206 9.5 174s [6,] 1378 265 0 0.0 0.0 4.7 72.7 0.0 0 0 0 17.0 174s [,38] [,39] [,40] [,41] [,42] [,43] [,44] [,45] [,46] [,47] [,48] [,49] 174s [1,] 0.0 0 42 0.00 24.2 0 19 62 26 53.3 201 34 174s [2,] 8.6 33 16 0.00 3.6 23 55 18 128 3.9 34 214 174s [3,] 1.7 20 39 0.00 45.9 55 41 24 125 17.7 1103 63 174s [4,] 3.7 21 28 0.37 111.8 72 123 42 118 5.3 489 66 174s [5,] 47.7 22 86 1.40 3.5 17 135 232 60 11.7 51 16 174s [6,] 0.0 22 0 0.43 38.1 44 26 21 104 7.1 473 236 174s [,50] [,51] [,52] [,53] [,54] [,55] [,56] [,57] [,58] [,59] [,60] [,61] 174s [1,] 68 0 2.45 5.3 47.2 0.0 0.0 0.0 0 0 0 0.0 174s [2,] 22 62 5.73 83.3 7.4 0.0 0.0 0.0 0 0 0 0.0 174s [3,] 1120 61 3.87 38.7 58.9 0.0 0.0 4.2 0 10 0 0.0 174s [4,] 69 443 3.29 49.2 32.5 0.0 0.0 0.0 0 0 0 0.0 174s [5,] 99 91 0.91 46.9 251.6 0.0 6.5 0.0 0 0 13 1.6 174s [6,] 260 136 3.70 57.1 113.2 1.8 0.0 0.0 4 0 32 2.3 174s [,62] [,63] [,64] [,65] [,66] [,67] [,68] [,69] [,70] [,71] [,72] [,73] 174s [1,] 0.0 0.00 0.16 0.00 0.00 0 0 0.0 0.0 41 0 0.0 174s [2,] 0.0 0.00 1.18 0.00 0.00 0 24 5.4 4.2 17 0 3.4 174s [3,] 0.0 0.00 6.63 0.50 0.40 47 30 41.4 21.7 119 0 0.0 174s [4,] 3.1 0.00 0.00 0.10 3.74 22 126 83.3 6.7 54 0 0.0 174s [5,] 4.7 0.61 0.00 0.38 0.44 57 20 43.7 69.3 16 3 0.0 174s [6,] 0.0 1.69 0.00 0.00 0.00 53 0 19.5 32.3 0 0 0.0 174s [,74] [,75] [,76] [,77] [,78] [,79] [,80] [,81] [,82] [,83] [,84] [,85] 174s [1,] 0.00 0 0 0 0.0 0.0 0.00 0.0 0.00 10.6 0.0 0.00 174s [2,] 0.00 0 0 0 0.0 1.2 0.00 0.0 0.00 9.7 13.4 0.00 174s [3,] 0.00 13 11 0 3.2 1.0 0.00 2.0 0.00 0.0 6.9 0.00 174s [4,] 0.87 0 0 0 0.0 0.0 0.99 3.5 0.26 0.0 0.0 0.51 174s [5,] 0.00 0 0 0 0.0 0.0 0.73 0.0 1.47 0.0 0.0 0.61 174s [6,] 0.00 0 0 41 0.0 0.0 0.00 0.0 0.00 0.0 0.0 0.00 174s [,86] [,87] [,88] [,89] [,90] [,91] [,92] [,93] [,94] [,95] [,96] [,97] 174s [1,] 12.6 0 0 0.0 0 2.6 0.0 1.2 3.62 0.0 0.47 0.00 174s [2,] 3.2 0 25 0.0 0 0.9 0.0 3.6 0.39 0.0 0.00 0.00 174s [3,] 9.6 0 11 2.2 0 9.9 1.0 12.3 1.84 0.0 0.00 0.00 174s [4,] 0.0 22 18 19.1 230 10.4 7.7 18.8 1.42 0.0 0.00 0.93 174s [5,] 0.0 39 51 4.2 52 0.0 12.8 0.0 0.00 0.0 0.00 0.00 174s [6,] 0.0 26 0 4.4 98 0.0 1.5 0.0 0.00 3.9 0.00 0.00 174s [,98] [,99] [,100] [,101] [,102] [,103] [,104] [,105] [,106] [,107] [,108] 174s [1,] 0.0 0.00 0.00 0.0 0.0 18.4 1.1 0 0.0 0.0 0 174s [2,] 0.0 0.00 0.00 0.0 9.8 3.3 5.4 0 1.5 0.0 0 174s [3,] 0.0 0.00 0.00 36.2 25.5 0.0 2.8 0 2.9 12.2 0 174s [4,] 3.8 0.00 0.82 8.2 0.0 0.0 0.0 41 14.6 25.8 432 174s [5,] 0.0 0.98 0.84 0.0 0.0 0.0 0.0 28 0.0 5.4 3135 174s [6,] 0.0 0.00 0.00 0.0 0.0 0.0 0.0 80 0.0 0.0 524 174s [,109] [,110] [,111] [,112] [,113] [,114] [,115] [,116] [,117] [,118] 174s [1,] 0.0 0.0 0 0.0 0 0.0 0.0 8.8 11.6 39 174s [2,] 7.8 0.0 0 2.1 0 0.0 0.0 8.6 0.0 90 174s [3,] 10.0 0.0 0 0.8 0 7.1 5.6 8.0 31.6 27 174s [4,] 30.3 22.9 30 3.7 184 3.5 14.9 0.0 5.3 0 174s [5,] 0.0 2.4 116 0.0 16 13.0 1.4 0.0 0.0 0 174s [6,] 0.0 3.8 76 0.0 65 0.0 0.0 0.0 0.0 0 174s [,119] [,120] [,121] [,122] [,123] [,124] [,125] [,126] [,127] [,128] 174s [1,] 0.00 0.0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.7 174s [2,] 0.46 0.0 0 0.0 5.8 0.0 0.0 0.0 8.5 1.7 174s [3,] 0.00 0.0 0 0.0 0.0 0.0 0.0 3.2 0.0 0.0 174s [4,] 0.00 0.0 0 0.0 0.0 0.0 0.0 5.2 0.0 0.0 174s [5,] 0.00 8.6 0 1.1 0.0 6.8 9.6 0.0 2.1 0.0 174s [6,] 0.00 0.0 19 0.0 0.0 2.9 6.9 0.0 0.0 0.0 174s [,129] [,130] [,131] [,132] [,133] [,134] [,135] [,136] [,137] [,138] 174s [1,] 0.0 0.00 0.00 0.00 0.00 0.0 0 0 0.77 0.0 174s [2,] 3.2 0.55 2.30 1.33 0.00 0.0 0 0 1.48 0.0 174s [3,] 1.7 2.04 0.52 0.64 0.00 0.0 0 27 0.00 0.0 174s [4,] 0.0 0.00 0.00 0.00 0.96 4.0 0 26 0.00 2.4 174s [5,] 0.0 0.00 0.00 0.00 0.93 1.7 43 0 0.00 0.0 174s [6,] 0.0 0.00 0.00 0.00 0.00 0.0 45 0 0.00 0.0 174s [,139] [,140] [,141] [,142] [,143] [,144] 174s [1,] 0 0.0 0.0 0 1.8 0.00 174s [2,] 0 0.0 0.0 11 0.0 0.00 174s [3,] 4 0.0 0.0 0 0.0 0.55 174s [4,] 0 0.0 5.9 0 0.0 0.00 174s [5,] 0 3.6 0.0 0 0.0 0.00 174s [6,] 0 0.0 0.0 0 0.0 0.00 174s > options(digits=4) 174s > 174s > x <- prabinit(prabmatrix=siskiyou, neighborhood=siskiyou.nb, distance="none",toprab=TRUE,toprabp=0.5) 174s > x2 <- prabinit(prabmatrix=siskiyou, neighborhood=siskiyou.nb, distance="none",toprab=TRUE,toprabp=0) 174s > x$prab 174s [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12] 174s [1,] FALSE FALSE FALSE FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [2,] FALSE FALSE FALSE FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [3,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE TRUE 174s [4,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [5,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [6,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [,13] [,14] [,15] [,16] [,17] [,18] [,19] [,20] [,21] [,22] [,23] [,24] 174s [1,] TRUE FALSE FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [2,] TRUE FALSE TRUE TRUE TRUE TRUE FALSE TRUE TRUE TRUE TRUE TRUE 174s [3,] TRUE FALSE FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [4,] FALSE FALSE FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [5,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE TRUE 174s [6,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [,25] [,26] [,27] [,28] [,29] [,30] [,31] [,32] [,33] [,34] [,35] [,36] 174s [1,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [2,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [3,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [4,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [5,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE FALSE TRUE TRUE TRUE 174s [6,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [,37] [,38] [,39] [,40] [,41] [,42] [,43] [,44] [,45] [,46] [,47] [,48] 174s [1,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE FALSE TRUE TRUE TRUE 174s [2,] TRUE TRUE TRUE TRUE FALSE TRUE TRUE TRUE TRUE TRUE TRUE FALSE 174s [3,] TRUE TRUE TRUE TRUE FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [4,] TRUE FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [5,] TRUE TRUE FALSE TRUE TRUE TRUE FALSE TRUE TRUE TRUE TRUE TRUE 174s [6,] FALSE FALSE FALSE FALSE FALSE TRUE TRUE FALSE TRUE TRUE TRUE TRUE 174s [,49] [,50] [,51] [,52] [,53] [,54] [,55] [,56] [,57] [,58] [,59] [,60] 174s [1,] TRUE TRUE FALSE FALSE TRUE TRUE FALSE FALSE FALSE FALSE FALSE FALSE 174s [2,] TRUE TRUE FALSE TRUE TRUE TRUE FALSE FALSE FALSE FALSE FALSE TRUE 174s [3,] TRUE TRUE TRUE TRUE TRUE TRUE FALSE FALSE FALSE FALSE FALSE TRUE 174s [4,] TRUE TRUE TRUE TRUE TRUE TRUE FALSE FALSE FALSE FALSE FALSE FALSE 174s [5,] TRUE TRUE TRUE TRUE TRUE TRUE FALSE FALSE FALSE FALSE FALSE FALSE 174s [6,] TRUE TRUE TRUE TRUE TRUE TRUE FALSE FALSE FALSE FALSE FALSE FALSE 174s [,61] [,62] [,63] [,64] [,65] [,66] [,67] [,68] [,69] [,70] [,71] [,72] 174s [1,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [2,] TRUE TRUE FALSE FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE FALSE 174s [3,] TRUE TRUE FALSE TRUE FALSE TRUE TRUE TRUE TRUE TRUE TRUE FALSE 174s [4,] FALSE FALSE FALSE FALSE FALSE FALSE TRUE TRUE TRUE TRUE TRUE FALSE 174s [5,] FALSE FALSE FALSE FALSE FALSE TRUE TRUE TRUE TRUE TRUE TRUE FALSE 174s [6,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE TRUE TRUE TRUE FALSE 174s [,73] [,74] [,75] [,76] [,77] [,78] [,79] [,80] [,81] [,82] [,83] [,84] 174s [1,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [2,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [3,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE TRUE FALSE TRUE TRUE TRUE 174s [4,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE TRUE FALSE TRUE TRUE TRUE 174s [5,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [6,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [,85] [,86] [,87] [,88] [,89] [,90] [,91] [,92] [,93] [,94] [,95] [,96] 174s [1,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [2,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [3,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE FALSE FALSE 174s [4,] FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE FALSE FALSE 174s [5,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE FALSE FALSE 174s [6,] FALSE FALSE FALSE TRUE TRUE FALSE TRUE TRUE TRUE TRUE FALSE FALSE 174s [,97] [,98] [,99] [,100] [,101] [,102] [,103] [,104] [,105] [,106] [,107] 174s [1,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [2,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [3,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [4,] FALSE FALSE FALSE TRUE TRUE TRUE TRUE FALSE TRUE TRUE TRUE 174s [5,] FALSE FALSE FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [6,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE TRUE TRUE TRUE TRUE 174s [,108] [,109] [,110] [,111] [,112] [,113] [,114] [,115] [,116] [,117] 174s [1,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [2,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [3,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [4,] TRUE TRUE TRUE FALSE TRUE TRUE TRUE TRUE TRUE FALSE 174s [5,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [6,] TRUE TRUE TRUE TRUE TRUE FALSE TRUE TRUE TRUE TRUE 174s [,118] [,119] [,120] [,121] [,122] [,123] [,124] [,125] [,126] [,127] 174s [1,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [2,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [3,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [4,] TRUE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [5,] TRUE FALSE FALSE FALSE FALSE FALSE TRUE TRUE TRUE TRUE 174s [6,] TRUE FALSE FALSE FALSE FALSE FALSE TRUE TRUE TRUE TRUE 174s [,128] [,129] [,130] [,131] [,132] [,133] [,134] [,135] [,136] [,137] 174s [1,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [2,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [3,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [4,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [5,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [6,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [,138] [,139] [,140] [,141] [,142] [,143] [,144] 174s [1,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [2,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [3,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [4,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [5,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [6,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s > x2$prab 174s [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12] 174s [1,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [2,] FALSE FALSE FALSE FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [3,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE TRUE 174s [4,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [5,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [6,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [,13] [,14] [,15] [,16] [,17] [,18] [,19] [,20] [,21] [,22] [,23] [,24] 174s [1,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [2,] TRUE TRUE TRUE TRUE TRUE TRUE FALSE TRUE TRUE TRUE TRUE TRUE 174s [3,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [4,] FALSE FALSE FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [5,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE TRUE 174s [6,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [,25] [,26] [,27] [,28] [,29] [,30] [,31] [,32] [,33] [,34] [,35] [,36] 174s [1,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [2,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [3,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [4,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [5,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [6,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [,37] [,38] [,39] [,40] [,41] [,42] [,43] [,44] [,45] [,46] [,47] [,48] 174s [1,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [2,] TRUE TRUE TRUE TRUE FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [3,] TRUE TRUE TRUE TRUE FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [4,] TRUE FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [5,] TRUE TRUE TRUE TRUE TRUE TRUE FALSE TRUE TRUE TRUE TRUE TRUE 174s [6,] FALSE FALSE FALSE FALSE FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [,49] [,50] [,51] [,52] [,53] [,54] [,55] [,56] [,57] [,58] [,59] [,60] 174s [1,] TRUE TRUE TRUE TRUE TRUE TRUE FALSE FALSE FALSE FALSE FALSE FALSE 174s [2,] TRUE TRUE FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [3,] TRUE TRUE TRUE TRUE TRUE TRUE FALSE FALSE FALSE FALSE FALSE TRUE 174s [4,] TRUE TRUE TRUE TRUE TRUE TRUE FALSE FALSE FALSE FALSE FALSE FALSE 174s [5,] TRUE TRUE TRUE TRUE TRUE TRUE FALSE FALSE FALSE FALSE FALSE FALSE 174s [6,] TRUE TRUE TRUE TRUE TRUE TRUE FALSE FALSE FALSE FALSE FALSE FALSE 174s [,61] [,62] [,63] [,64] [,65] [,66] [,67] [,68] [,69] [,70] [,71] [,72] 174s [1,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [2,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE FALSE 174s [3,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [4,] FALSE FALSE FALSE TRUE TRUE FALSE TRUE TRUE TRUE TRUE TRUE FALSE 174s [5,] FALSE FALSE FALSE FALSE FALSE TRUE TRUE TRUE TRUE TRUE TRUE FALSE 174s [6,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE TRUE TRUE TRUE FALSE 174s [,73] [,74] [,75] [,76] [,77] [,78] [,79] [,80] [,81] [,82] [,83] [,84] 174s [1,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [2,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [3,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [4,] FALSE FALSE FALSE FALSE FALSE FALSE TRUE TRUE TRUE TRUE TRUE TRUE 174s [5,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [6,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [,85] [,86] [,87] [,88] [,89] [,90] [,91] [,92] [,93] [,94] [,95] [,96] 174s [1,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [2,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [3,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE FALSE FALSE 174s [4,] FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [5,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE FALSE FALSE 174s [6,] FALSE FALSE FALSE TRUE TRUE FALSE TRUE TRUE TRUE TRUE FALSE FALSE 174s [,97] [,98] [,99] [,100] [,101] [,102] [,103] [,104] [,105] [,106] [,107] 174s [1,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [2,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [3,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [4,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [5,] FALSE FALSE FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [6,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE TRUE TRUE TRUE TRUE 174s [,108] [,109] [,110] [,111] [,112] [,113] [,114] [,115] [,116] [,117] 174s [1,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [2,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [3,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [4,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [5,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [6,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [,118] [,119] [,120] [,121] [,122] [,123] [,124] [,125] [,126] [,127] 174s [1,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [2,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [3,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [4,] TRUE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [5,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [6,] TRUE FALSE FALSE FALSE FALSE FALSE TRUE TRUE TRUE TRUE 174s [,128] [,129] [,130] [,131] [,132] [,133] [,134] [,135] [,136] [,137] 174s [1,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [2,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [3,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [4,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [5,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [6,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s [,138] [,139] [,140] [,141] [,142] [,143] [,144] 174s [1,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [2,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [3,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [4,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [5,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE 174s [6,] TRUE TRUE TRUE TRUE TRUE TRUE TRUE 174s > 174s > 174s > 174s autopkgtest [12:36:14]: test run-unit-test: -----------------------] 174s autopkgtest [12:36:14]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 174s run-unit-test PASS 174s autopkgtest [12:36:14]: test pkg-r-autopkgtest: preparing testbed 176s Note, using file '/tmp/autopkgtest.bh4YRB/3-autopkgtest-satdep.dsc' to get the build dependencies 176s Reading package lists... 176s Building dependency tree... 176s Reading state information... 177s Starting pkgProblemResolver with broken count: 0 177s Starting 2 pkgProblemResolver with broken count: 0 177s Done 177s The following NEW packages will be installed: 177s dctrl-tools gfortran gfortran-13 gfortran-13-x86-64-linux-gnu 177s gfortran-x86-64-linux-gnu icu-devtools libblas-dev libbz2-dev 177s libgfortran-13-dev libicu-dev libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev 177s liblapack-dev liblzma-dev libncurses-dev libpcre2-16-0 libpcre2-32-0 177s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev 177s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev zlib1g-dev 177s 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. 177s Need to get 33.6 MB of archives. 177s After this operation, 130 MB of additional disk space will be used. 177s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 177s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 177s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 177s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 177s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 177s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 177s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 177s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 177s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 177s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 177s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 177s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 177s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 177s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 177s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 177s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 177s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 177s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 177s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 177s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 177s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 177s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 177s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 177s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 178s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 178s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 178s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 178s Get:28 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 178s Get:29 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 178s Fetched 33.6 MB in 0s (86.6 MB/s) 178s Selecting previously unselected package dctrl-tools. 178s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80062 files and directories currently installed.) 178s Preparing to unpack .../00-dctrl-tools_2.24-3build2_amd64.deb ... 178s Unpacking dctrl-tools (2.24-3build2) ... 178s Selecting previously unselected package libgfortran-13-dev:amd64. 178s Preparing to unpack .../01-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 178s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 178s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 178s Preparing to unpack .../02-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 178s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 178s Selecting previously unselected package gfortran-13. 178s Preparing to unpack .../03-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 178s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 178s Selecting previously unselected package gfortran-x86-64-linux-gnu. 178s Preparing to unpack .../04-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 178s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 178s Selecting previously unselected package gfortran. 178s Preparing to unpack .../05-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 178s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 178s Selecting previously unselected package icu-devtools. 178s Preparing to unpack .../06-icu-devtools_74.2-1ubuntu1_amd64.deb ... 178s Unpacking icu-devtools (74.2-1ubuntu1) ... 178s Selecting previously unselected package libblas-dev:amd64. 178s Preparing to unpack .../07-libblas-dev_3.12.0-3_amd64.deb ... 178s Unpacking libblas-dev:amd64 (3.12.0-3) ... 178s Selecting previously unselected package libbz2-dev:amd64. 178s Preparing to unpack .../08-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 178s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 178s Selecting previously unselected package libicu-dev:amd64. 178s Preparing to unpack .../09-libicu-dev_74.2-1ubuntu1_amd64.deb ... 178s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 179s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 179s Preparing to unpack .../10-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 179s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 179s Selecting previously unselected package libjpeg8-dev:amd64. 179s Preparing to unpack .../11-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 179s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 179s Selecting previously unselected package libjpeg-dev:amd64. 179s Preparing to unpack .../12-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 179s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 179s Selecting previously unselected package liblapack-dev:amd64. 179s Preparing to unpack .../13-liblapack-dev_3.12.0-3_amd64.deb ... 179s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 179s Selecting previously unselected package libncurses-dev:amd64. 179s Preparing to unpack .../14-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 179s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 179s Selecting previously unselected package libpcre2-16-0:amd64. 179s Preparing to unpack .../15-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 179s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 179s Selecting previously unselected package libpcre2-32-0:amd64. 179s Preparing to unpack .../16-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 179s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 179s Selecting previously unselected package libpcre2-posix3:amd64. 179s Preparing to unpack .../17-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 179s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 179s Selecting previously unselected package libpcre2-dev:amd64. 179s Preparing to unpack .../18-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 179s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 179s Selecting previously unselected package libpkgconf3:amd64. 179s Preparing to unpack .../19-libpkgconf3_1.8.1-2_amd64.deb ... 179s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 179s Selecting previously unselected package zlib1g-dev:amd64. 179s Preparing to unpack .../20-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 179s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 179s Selecting previously unselected package libpng-dev:amd64. 179s Preparing to unpack .../21-libpng-dev_1.6.43-1_amd64.deb ... 179s Unpacking libpng-dev:amd64 (1.6.43-1) ... 179s Selecting previously unselected package libreadline-dev:amd64. 179s Preparing to unpack .../22-libreadline-dev_8.2-3_amd64.deb ... 179s Unpacking libreadline-dev:amd64 (8.2-3) ... 179s Selecting previously unselected package pkgconf-bin. 179s Preparing to unpack .../23-pkgconf-bin_1.8.1-2_amd64.deb ... 179s Unpacking pkgconf-bin (1.8.1-2) ... 179s Selecting previously unselected package pkgconf:amd64. 179s Preparing to unpack .../24-pkgconf_1.8.1-2_amd64.deb ... 179s Unpacking pkgconf:amd64 (1.8.1-2) ... 179s Selecting previously unselected package pkg-config:amd64. 179s Preparing to unpack .../25-pkg-config_1.8.1-2_amd64.deb ... 179s Unpacking pkg-config:amd64 (1.8.1-2) ... 179s Selecting previously unselected package liblzma-dev:amd64. 179s Preparing to unpack .../26-liblzma-dev_5.4.5-0.3_amd64.deb ... 179s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 179s Selecting previously unselected package r-base-dev. 179s Preparing to unpack .../27-r-base-dev_4.3.2-1build1_all.deb ... 179s Unpacking r-base-dev (4.3.2-1build1) ... 179s Selecting previously unselected package pkg-r-autopkgtest. 179s Preparing to unpack .../28-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 179s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 179s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 179s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 179s Setting up libreadline-dev:amd64 (8.2-3) ... 179s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 179s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 179s Setting up libpkgconf3:amd64 (1.8.1-2) ... 179s Setting up icu-devtools (74.2-1ubuntu1) ... 179s Setting up pkgconf-bin (1.8.1-2) ... 179s Setting up liblzma-dev:amd64 (5.4.5-0.3) ... 179s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 179s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 179s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 179s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 179s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ... 179s Setting up libblas-dev:amd64 (3.12.0-3) ... 179s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 179s Setting up dctrl-tools (2.24-3build2) ... 180s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 180s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ... 180s Setting up libpng-dev:amd64 (1.6.43-1) ... 180s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 180s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 180s Setting up pkgconf:amd64 (1.8.1-2) ... 180s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 180s Setting up liblapack-dev:amd64 (3.12.0-3) ... 180s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 180s Setting up pkg-config:amd64 (1.8.1-2) ... 180s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 180s Setting up gfortran (4:13.2.0-7ubuntu1) ... 180s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 180s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 180s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 180s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 180s Setting up r-base-dev (4.3.2-1build1) ... 180s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 180s Processing triggers for libc-bin (2.39-0ubuntu6) ... 180s Processing triggers for man-db (2.12.0-3) ... 180s Processing triggers for install-info (7.1-3) ... 186s Reading package lists... 187s Building dependency tree... 187s Reading state information... 187s Starting pkgProblemResolver with broken count: 0 187s Starting 2 pkgProblemResolver with broken count: 0 187s Done 187s The following NEW packages will be installed: 187s autopkgtest-satdep 187s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 187s Need to get 0 B/696 B of archives. 187s After this operation, 0 B of additional disk space will be used. 187s Get:1 /tmp/autopkgtest.bh4YRB/4-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 188s Selecting previously unselected package autopkgtest-satdep. 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80791 files and directories currently installed.) 188s Preparing to unpack .../4-autopkgtest-satdep.deb ... 188s Unpacking autopkgtest-satdep (0) ... 188s Setting up autopkgtest-satdep (0) ... 189s (Reading database ... 80791 files and directories currently installed.) 189s Removing autopkgtest-satdep (0) ... 190s autopkgtest [12:36:30]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 190s autopkgtest [12:36:30]: test pkg-r-autopkgtest: [----------------------- 190s Test: Try to load the R library prabclus 190s 190s R version 4.3.2 (2023-10-31) -- "Eye Holes" 190s Copyright (C) 2023 The R Foundation for Statistical Computing 190s Platform: x86_64-pc-linux-gnu (64-bit) 190s 190s R is free software and comes with ABSOLUTELY NO WARRANTY. 190s You are welcome to redistribute it under certain conditions. 190s Type 'license()' or 'licence()' for distribution details. 190s 190s R is a collaborative project with many contributors. 190s Type 'contributors()' for more information and 190s 'citation()' on how to cite R or R packages in publications. 190s 190s Type 'demo()' for some demos, 'help()' for on-line help, or 190s 'help.start()' for an HTML browser interface to help. 190s Type 'q()' to quit R. 190s 190s > library('prabclus') 190s Loading required package: MASS 190s Loading required package: mclust 190s Package 'mclust' version 6.0.1 190s Type 'citation("mclust")' for citing this R package in publications. 190s > 190s > 190s Other tests are currently unsupported! 190s They will be progressively added. 190s autopkgtest [12:36:30]: test pkg-r-autopkgtest: -----------------------] 190s autopkgtest [12:36:30]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 190s pkg-r-autopkgtest PASS 190s autopkgtest [12:36:30]: @@@@@@@@@@@@@@@@@@@@ summary 190s run-unit-test PASS 190s pkg-r-autopkgtest PASS 207s Creating nova instance adt-noble-i386-r-cran-prabclus-20240323-123320-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240323.img (UUID 5df8a563-0957-4fdd-8453-862df650aaf8)...