0s autopkgtest [09:52:49]: starting date and time: 2024-03-23 09:52:49+0000 0s autopkgtest [09:52:49]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [09:52:49]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0elthpw4/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-cran-optimx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-10.secgroup --name adt-noble-i386-r-cran-optimx-20240323-095249-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 188s autopkgtest [09:55:57]: testbed dpkg architecture: amd64 188s autopkgtest [09:55:57]: testbed apt version: 2.7.12 188s autopkgtest [09:55:57]: test architecture: i386 188s autopkgtest [09:55:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 188s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 188s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 188s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 188s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 188s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4029 kB] 188s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [450 kB] 188s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [685 kB] 188s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 188s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 188s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 188s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 188s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1298 kB] 188s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4412 kB] 188s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 188s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [96.1 kB] 188s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [27.1 kB] 188s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 192s Fetched 11.7 MB in 2s (7807 kB/s) 192s Reading package lists... 195s Reading package lists... 195s Building dependency tree... 195s Reading state information... 195s Calculating upgrade... 196s The following packages will be upgraded: 196s libc-bin libc6 locales 196s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 196s Need to get 8176 kB of archives. 196s After this operation, 2048 B of additional disk space will be used. 196s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc6 amd64 2.39-0ubuntu6 [3262 kB] 196s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libc-bin amd64 2.39-0ubuntu6 [682 kB] 196s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 locales all 2.39-0ubuntu6 [4232 kB] 196s Preconfiguring packages ... 196s Fetched 8176 kB in 0s (95.6 MB/s) 196s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 196s Preparing to unpack .../libc6_2.39-0ubuntu6_amd64.deb ... 196s Unpacking libc6:amd64 (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 197s Setting up libc6:amd64 (2.39-0ubuntu6) ... 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 197s Preparing to unpack .../libc-bin_2.39-0ubuntu6_amd64.deb ... 197s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 197s Setting up libc-bin (2.39-0ubuntu6) ... 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 197s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ... 197s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 198s Setting up locales (2.39-0ubuntu6) ... 198s Generating locales (this might take a while)... 200s en_US.UTF-8... done 200s Generation complete. 200s Processing triggers for man-db (2.12.0-3) ... 201s Reading package lists... 203s Building dependency tree... 204s Reading state information...sh: Attempting to set up Debian/Ubuntu apt sources automatically 204s 204s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 204s Reading package lists...sh: Distribution appears to be Ubuntu 204s 204s Building dependency tree... 204s Reading state information... 204s eatmydata is already the newest version (131-1). 204s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 204s Reading package lists... 205s Building dependency tree... 205s Reading state information... 205s dbus is already the newest version (1.14.10-4ubuntu1). 205s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 205s Reading package lists... 205s Building dependency tree... 205s Reading state information... 207s rng-tools-debian is already the newest version (2.4). 207s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 207s Reading package lists... 207s Building dependency tree... 207s Reading state information... 207s The following packages will be REMOVED: 207s cloud-init* python3-configobj* python3-debconf* 207s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 207s After this operation, 3256 kB disk space will be freed. 207s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 207s Removing cloud-init (24.1.2-0ubuntu1) ... 207s Removing python3-configobj (5.0.8-3) ... 207s Removing python3-debconf (1.5.86) ... 208s Processing triggers for man-db (2.12.0-3) ... 208s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 208s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 208s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 208s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 208s invoke-rc.d: policy-rc.d denied execution of try-restart. 209s Reading package lists... 209s Building dependency tree... 209s Reading state information... 209s linux-generic is already the newest version (6.8.0-11.11+1). 209s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 209s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 209s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 209s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 212s Reading package lists... 212s Reading package lists... 212s Building dependency tree... 212s Reading state information... 212s Calculating upgrade... 213s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 213s Reading package lists... 213s Building dependency tree... 213s Reading state information... 213s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 213s autopkgtest [09:56:22]: rebooting testbed after setup commands that affected boot 258s autopkgtest [09:57:07]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 259s autopkgtest [09:57:08]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-optimx 260s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-optimx 2023-10.21-1 (dsc) [2298 B] 260s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-optimx 2023-10.21-1 (tar) [2049 kB] 260s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-optimx 2023-10.21-1 (diff) [3976 B] 260s gpgv: Signature made Tue Nov 21 13:20:38 2023 UTC 260s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 260s gpgv: issuer "tille@debian.org" 260s gpgv: Can't check signature: No public key 260s dpkg-source: warning: cannot verify inline signature for ./r-cran-optimx_2023-10.21-1.dsc: no acceptable signature found 260s autopkgtest [09:57:09]: testing package r-cran-optimx version 2023-10.21-1 261s autopkgtest [09:57:10]: build not needed 265s autopkgtest [09:57:14]: test run-unit-test: preparing testbed 270s Note, using file '/tmp/autopkgtest.afzAyY/1-autopkgtest-satdep.dsc' to get the build dependencies 270s Reading package lists... 270s Building dependency tree... 270s Reading state information... 270s Starting pkgProblemResolver with broken count: 0 270s Starting 2 pkgProblemResolver with broken count: 0 270s Done 270s The following NEW packages will be installed: 270s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 270s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 270s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 270s g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 270s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu javascript-common libasan8 270s libatomic1 libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 270s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran5 libgomp1 270s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libisl23 libitm1 libjbig0 270s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 270s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 270s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 270s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 270s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack3 liblerc4 270s liblsan0 liblua5.4-0 libmpc3 libnlopt0 libpango-1.0-0 libpangocairo-1.0-0 270s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libquadmath0 270s libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 270s libtiff6 libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 270s libxft2 libxrender1 libxss1 libxt6 linux-libc-dev littler 270s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 270s r-base-core r-cran-base64enc r-cran-brio r-cran-bslib r-cran-cachem 270s r-cran-callr r-cran-cli r-cran-commonmark r-cran-crayon r-cran-desc 270s r-cran-dfoptim r-cran-diffobj r-cran-digest r-cran-ellipsis r-cran-evaluate 270s r-cran-fansi r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue 270s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite 270s r-cran-knitr r-cran-later r-cran-lbfgsb3c r-cran-lifecycle r-cran-littler 270s r-cran-magrittr r-cran-memoise r-cran-mime r-cran-minqa r-cran-nloptr 270s r-cran-numderiv r-cran-optimx r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 270s r-cran-pkgkitten r-cran-pkgload r-cran-pracma r-cran-praise r-cran-processx 270s r-cran-promises r-cran-ps r-cran-r.cache r-cran-r.methodss3 r-cran-r.oo 270s r-cran-r.rsp r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcpp 270s r-cran-rcpparmadillo r-cran-rematch2 r-cran-rlang r-cran-rmarkdown 270s r-cran-rprojroot r-cran-sass r-cran-setrng r-cran-shiny r-cran-sourcetools 270s r-cran-stringi r-cran-stringr r-cran-testthat r-cran-tibble r-cran-tinytex 270s r-cran-ucminf r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun 270s r-cran-xtable r-cran-yaml rpcsvc-proto tcl tcl8.6 unzip x11-common xdg-utils 270s zip 270s 0 upgraded, 182 newly installed, 0 to remove and 0 not upgraded. 270s Need to get 184 MB of archives. 270s After this operation, 675 MB of additional disk space will be used. 270s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu6 [20.4 kB] 270s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 270s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 270s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 270s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu6 [2126 kB] 270s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 270s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 270s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 270s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 270s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 270s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 270s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 270s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 270s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 270s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 270s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 270s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 270s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 270s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 270s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 270s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 270s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 270s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 270s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 270s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 270s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 270s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 270s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 270s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 270s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 270s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 270s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 270s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 270s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 270s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 270s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 270s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 270s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 270s Get:39 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 270s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 270s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 270s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 270s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 270s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 270s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 270s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 270s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 270s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 270s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 271s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 271s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 271s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 271s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 271s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 271s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 271s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 271s Get:57 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 271s Get:58 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 271s Get:59 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 271s Get:60 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 271s Get:61 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 271s Get:62 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 271s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 271s Get:64 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 271s Get:65 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 271s Get:66 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 271s Get:67 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 271s Get:68 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 271s Get:69 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 271s Get:70 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 271s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 271s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 271s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 271s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 271s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 271s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 271s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 271s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 271s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 271s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 271s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 271s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 271s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 271s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 271s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 271s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 271s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 271s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 271s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.14-1 [779 kB] 271s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 271s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 271s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 271s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 271s Get:94 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 271s Get:95 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 271s Get:96 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 271s Get:97 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 271s Get:98 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 271s Get:99 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 271s Get:100 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 271s Get:101 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 271s Get:102 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 271s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 271s Get:104 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 271s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 271s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 271s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 271s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 271s Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 271s Get:110 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 271s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 271s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 271s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 271s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 271s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 271s Get:116 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 271s Get:117 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 271s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 271s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 271s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 271s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 271s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 271s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 271s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 271s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 271s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 271s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 271s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dfoptim all 2023.1.0-1 [75.0 kB] 271s Get:129 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 271s Get:130 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 271s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 271s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 271s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 271s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 271s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 271s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 271s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 271s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 271s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 271s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 271s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 271s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 271s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 271s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] 271s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpparmadillo amd64 0.12.8.0.0-1 [862 kB] 271s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lbfgsb3c amd64 2020-3.3-1 [125 kB] 271s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-minqa amd64 1.2.6-1 [116 kB] 271s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 libnlopt0 amd64 2.7.1-5build2 [184 kB] 271s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 271s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 271s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 271s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 271s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 271s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 271s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 271s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 271s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 271s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 271s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 271s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 271s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 271s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nloptr amd64 2.0.3-1 [381 kB] 271s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pracma all 2.4.4-1 [1690 kB] 271s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-optimx all 2023-10.21-1 [2496 kB] 271s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 271s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.oo all 1.26.0-1 [955 kB] 271s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.utils all 2.12.3-1 [1386 kB] 271s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.cache all 0.16.0-1 [113 kB] 271s Get:169 http://ftpmaster.internal/ubuntu noble/main amd64 tcl8.6 amd64 8.6.13+dfsg-2 [14.7 kB] 271s Get:170 http://ftpmaster.internal/ubuntu noble/main amd64 tcl amd64 8.6.13 [3992 B] 271s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.rsp all 0.46.0+ds-1 [1412 kB] 271s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 271s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 271s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 271s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 271s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 271s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 271s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 271s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 272s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 272s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-setrng all 2022.4-1-1 [55.3 kB] 272s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ucminf amd64 1.2.1-1 [34.9 kB] 272s Preconfiguring packages ... 272s Fetched 184 MB in 2s (120 MB/s) 272s Selecting previously unselected package libc-dev-bin. 272s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 272s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu6_amd64.deb ... 272s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 273s Selecting previously unselected package linux-libc-dev:amd64. 273s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 273s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 273s Selecting previously unselected package libcrypt-dev:amd64. 273s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 273s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 273s Selecting previously unselected package rpcsvc-proto. 273s Preparing to unpack .../003-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 273s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 273s Selecting previously unselected package libc6-dev:amd64. 273s Preparing to unpack .../004-libc6-dev_2.39-0ubuntu6_amd64.deb ... 273s Unpacking libc6-dev:amd64 (2.39-0ubuntu6) ... 273s Selecting previously unselected package libisl23:amd64. 273s Preparing to unpack .../005-libisl23_0.26-3_amd64.deb ... 273s Unpacking libisl23:amd64 (0.26-3) ... 273s Selecting previously unselected package libmpc3:amd64. 273s Preparing to unpack .../006-libmpc3_1.3.1-1_amd64.deb ... 273s Unpacking libmpc3:amd64 (1.3.1-1) ... 273s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 273s Preparing to unpack .../007-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 273s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 274s Selecting previously unselected package cpp-13. 274s Preparing to unpack .../008-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 274s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 274s Selecting previously unselected package cpp-x86-64-linux-gnu. 274s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 274s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 274s Selecting previously unselected package cpp. 274s Preparing to unpack .../010-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 274s Unpacking cpp (4:13.2.0-7ubuntu1) ... 274s Selecting previously unselected package libcc1-0:amd64. 274s Preparing to unpack .../011-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 274s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 274s Selecting previously unselected package libgomp1:amd64. 274s Preparing to unpack .../012-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 274s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 274s Selecting previously unselected package libitm1:amd64. 274s Preparing to unpack .../013-libitm1_14-20240303-1ubuntu1_amd64.deb ... 274s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 274s Selecting previously unselected package libatomic1:amd64. 274s Preparing to unpack .../014-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 274s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 274s Selecting previously unselected package libasan8:amd64. 274s Preparing to unpack .../015-libasan8_14-20240303-1ubuntu1_amd64.deb ... 274s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 274s Selecting previously unselected package liblsan0:amd64. 274s Preparing to unpack .../016-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 274s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 274s Selecting previously unselected package libtsan2:amd64. 274s Preparing to unpack .../017-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 274s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 274s Selecting previously unselected package libubsan1:amd64. 274s Preparing to unpack .../018-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 274s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 274s Selecting previously unselected package libhwasan0:amd64. 274s Preparing to unpack .../019-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 274s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 274s Selecting previously unselected package libquadmath0:amd64. 274s Preparing to unpack .../020-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 274s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 274s Selecting previously unselected package libgcc-13-dev:amd64. 274s Preparing to unpack .../021-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 274s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 274s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 274s Preparing to unpack .../022-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 274s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 274s Selecting previously unselected package gcc-13. 274s Preparing to unpack .../023-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 274s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 274s Selecting previously unselected package gcc-x86-64-linux-gnu. 274s Preparing to unpack .../024-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 274s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 275s Selecting previously unselected package gcc. 275s Preparing to unpack .../025-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 275s Unpacking gcc (4:13.2.0-7ubuntu1) ... 275s Selecting previously unselected package libstdc++-13-dev:amd64. 275s Preparing to unpack .../026-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 275s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 275s Selecting previously unselected package g++-13-x86-64-linux-gnu. 275s Preparing to unpack .../027-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 275s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 275s Selecting previously unselected package g++-13. 275s Preparing to unpack .../028-g++-13_13.2.0-17ubuntu2_amd64.deb ... 275s Unpacking g++-13 (13.2.0-17ubuntu2) ... 275s Selecting previously unselected package g++-x86-64-linux-gnu. 275s Preparing to unpack .../029-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 275s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 275s Selecting previously unselected package g++. 275s Preparing to unpack .../030-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 275s Unpacking g++ (4:13.2.0-7ubuntu1) ... 275s Selecting previously unselected package build-essential. 275s Preparing to unpack .../031-build-essential_12.10ubuntu1_amd64.deb ... 275s Unpacking build-essential (12.10ubuntu1) ... 275s Selecting previously unselected package fonts-dejavu-mono. 275s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8_all.deb ... 275s Unpacking fonts-dejavu-mono (2.37-8) ... 275s Selecting previously unselected package fonts-dejavu-core. 275s Preparing to unpack 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.../038-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 276s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 276s Selecting previously unselected package fonts-mathjax. 276s Preparing to unpack .../039-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 276s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 276s Selecting previously unselected package javascript-common. 276s Preparing to unpack .../040-javascript-common_11+nmu1_all.deb ... 276s Unpacking javascript-common (11+nmu1) ... 276s Selecting previously unselected package libblas3:amd64. 276s Preparing to unpack .../041-libblas3_3.12.0-3_amd64.deb ... 276s Unpacking libblas3:amd64 (3.12.0-3) ... 276s Selecting previously unselected package libpixman-1-0:amd64. 276s Preparing to unpack .../042-libpixman-1-0_0.42.2-1_amd64.deb ... 276s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 276s Selecting previously unselected package libxcb-render0:amd64. 276s Preparing to unpack .../043-libxcb-render0_1.15-1_amd64.deb ... 276s Unpacking libxcb-render0:amd64 (1.15-1) ... 276s Selecting previously unselected package libxcb-shm0:amd64. 276s Preparing to unpack .../044-libxcb-shm0_1.15-1_amd64.deb ... 276s Unpacking libxcb-shm0:amd64 (1.15-1) ... 276s Selecting previously unselected package libxrender1:amd64. 276s Preparing to unpack .../045-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 276s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 276s Selecting previously unselected package libcairo2:amd64. 276s Preparing to unpack .../046-libcairo2_1.18.0-1_amd64.deb ... 276s Unpacking libcairo2:amd64 (1.18.0-1) ... 276s Selecting previously unselected package libdatrie1:amd64. 276s Preparing to unpack .../047-libdatrie1_0.2.13-3_amd64.deb ... 276s Unpacking libdatrie1:amd64 (0.2.13-3) ... 276s Selecting previously unselected package libdeflate0:amd64. 276s Preparing to unpack .../048-libdeflate0_1.19-1_amd64.deb ... 276s Unpacking libdeflate0:amd64 (1.19-1) ... 276s Selecting previously unselected package libgfortran5:amd64. 276s Preparing to unpack .../049-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 276s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 276s Selecting previously unselected package libgraphite2-3:amd64. 276s Preparing to unpack .../050-libgraphite2-3_1.3.14-2_amd64.deb ... 276s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 276s Selecting previously unselected package libharfbuzz0b:amd64. 276s Preparing to unpack .../051-libharfbuzz0b_8.3.0-2_amd64.deb ... 276s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 276s Selecting previously unselected package x11-common. 276s Preparing to unpack .../052-x11-common_1%3a7.7+23ubuntu2_all.deb ... 276s Unpacking x11-common (1:7.7+23ubuntu2) ... 276s Selecting previously unselected package libice6:amd64. 276s Preparing to unpack .../053-libice6_2%3a1.0.10-1build2_amd64.deb ... 276s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 276s Selecting previously unselected package libjpeg-turbo8:amd64. 276s Preparing to unpack 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(3.5.17-4) ... 277s Selecting previously unselected package libjs-es5-shim. 277s Preparing to unpack .../060-libjs-es5-shim_4.6.7-2_all.deb ... 277s Unpacking libjs-es5-shim (4.6.7-2) ... 277s Selecting previously unselected package libjs-highlight.js. 277s Preparing to unpack .../061-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 277s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 277s Selecting previously unselected package libjs-jquery. 277s Preparing to unpack .../062-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 277s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 277s Selecting previously unselected package libjs-jquery-datatables. 277s Preparing to unpack .../063-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 277s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 277s Selecting previously unselected package libjs-sifter.js. 277s Preparing to unpack .../064-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 277s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 277s Selecting previously unselected package libjs-microplugin.js. 277s Preparing to unpack .../065-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 277s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 277s Selecting previously unselected package libjs-jquery-selectize.js. 277s Preparing to unpack .../066-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 277s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 277s Selecting previously unselected package libjs-jquery-ui. 277s Preparing to unpack .../067-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 277s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 277s Selecting previously unselected package libjs-json. 277s Preparing to unpack .../068-libjs-json_0~20221030+~1.0.8-1_all.deb ... 277s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 277s Selecting previously unselected package libjs-prettify. 277s Preparing to unpack .../069-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 277s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 277s Selecting previously unselected package liblapack3:amd64. 277s Preparing to unpack .../070-liblapack3_3.12.0-3_amd64.deb ... 277s Unpacking liblapack3:amd64 (3.12.0-3) ... 277s Selecting previously unselected package liblerc4:amd64. 277s Preparing to unpack .../071-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 277s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 277s Selecting previously unselected package liblua5.4-0:amd64. 277s Preparing to unpack .../072-liblua5.4-0_5.4.6-3_amd64.deb ... 277s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 277s Selecting previously unselected package libthai-data. 277s Preparing to unpack .../073-libthai-data_0.1.29-2_all.deb ... 277s Unpacking libthai-data (0.1.29-2) ... 277s Selecting previously unselected package libthai0:amd64. 277s Preparing to unpack .../074-libthai0_0.1.29-2_amd64.deb ... 277s Unpacking libthai0:amd64 (0.1.29-2) ... 277s Selecting previously unselected package libpango-1.0-0:amd64. 277s Preparing to unpack .../075-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 277s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 277s Selecting previously unselected package libpangoft2-1.0-0:amd64. 277s Preparing to unpack .../076-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 277s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 277s Selecting previously unselected package libpangocairo-1.0-0:amd64. 277s Preparing to unpack .../077-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 277s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 277s Selecting previously unselected package libpaper1:amd64. 277s Preparing to unpack .../078-libpaper1_1.1.29_amd64.deb ... 277s Unpacking libpaper1:amd64 (1.1.29) ... 277s Selecting previously unselected package libpaper-utils. 277s Preparing to unpack .../079-libpaper-utils_1.1.29_amd64.deb ... 277s Unpacking libpaper-utils (1.1.29) ... 277s Selecting previously unselected package libsharpyuv0:amd64. 277s Preparing to unpack .../080-libsharpyuv0_1.3.2-0.4_amd64.deb ... 277s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 277s Selecting previously unselected package libsm6:amd64. 277s Preparing to unpack .../081-libsm6_2%3a1.2.3-1build2_amd64.deb ... 277s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 278s Selecting previously unselected package libtcl8.6:amd64. 278s Preparing to unpack .../082-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 278s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 278s Selecting previously unselected package libjbig0:amd64. 278s Preparing to unpack .../083-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 278s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 278s Selecting previously unselected package libwebp7:amd64. 278s Preparing to unpack .../084-libwebp7_1.3.2-0.4_amd64.deb ... 278s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 278s Selecting previously unselected package libtiff6:amd64. 278s Preparing to unpack .../085-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 278s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 278s Selecting previously unselected package libxft2:amd64. 278s Preparing to unpack .../086-libxft2_2.3.6-1_amd64.deb ... 278s Unpacking libxft2:amd64 (2.3.6-1) ... 278s Selecting previously unselected package libxss1:amd64. 278s Preparing to unpack .../087-libxss1_1%3a1.2.3-1build2_amd64.deb ... 278s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 278s Selecting previously unselected package libtk8.6:amd64. 278s Preparing to unpack .../088-libtk8.6_8.6.14-1_amd64.deb ... 278s Unpacking libtk8.6:amd64 (8.6.14-1) ... 278s Selecting previously unselected package libxt6:amd64. 278s Preparing to unpack .../089-libxt6_1%3a1.2.1-1.1_amd64.deb ... 278s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 278s Selecting previously unselected package zip. 278s Preparing to unpack .../090-zip_3.0-13_amd64.deb ... 278s Unpacking zip (3.0-13) ... 278s Selecting previously unselected package unzip. 278s Preparing to unpack .../091-unzip_6.0-28ubuntu3_amd64.deb ... 278s Unpacking unzip (6.0-28ubuntu3) ... 278s Selecting previously unselected package xdg-utils. 278s Preparing to unpack .../092-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 278s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 278s Selecting previously unselected package r-base-core. 278s Preparing to unpack .../093-r-base-core_4.3.2-1build1_amd64.deb ... 278s Unpacking r-base-core (4.3.2-1build1) ... 278s Selecting previously unselected package r-cran-littler. 278s Preparing to unpack .../094-r-cran-littler_0.3.19-1_amd64.deb ... 278s Unpacking r-cran-littler (0.3.19-1) ... 278s Selecting previously unselected package littler. 278s Preparing to unpack .../095-littler_0.3.19-1_all.deb ... 278s Unpacking littler (0.3.19-1) ... 278s Selecting previously unselected package node-bootstrap-sass. 278s Preparing to unpack .../096-node-bootstrap-sass_3.4.3-2_all.deb ... 278s Unpacking node-bootstrap-sass (3.4.3-2) ... 278s Selecting previously unselected package node-html5shiv. 278s Preparing to unpack .../097-node-html5shiv_3.7.3+dfsg-5_all.deb ... 278s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 278s Selecting previously unselected package node-normalize.css. 278s Preparing to unpack .../098-node-normalize.css_8.0.1-5_all.deb ... 278s Unpacking node-normalize.css (8.0.1-5) ... 278s Selecting previously unselected package pandoc-data. 278s Preparing to unpack .../099-pandoc-data_3.1.3-1_all.deb ... 278s Unpacking pandoc-data (3.1.3-1) ... 279s Selecting previously unselected package pandoc. 279s Preparing to unpack .../100-pandoc_3.1.3+ds-2_amd64.deb ... 279s Unpacking pandoc (3.1.3+ds-2) ... 279s Selecting previously unselected package r-cran-base64enc. 279s Preparing to unpack .../101-r-cran-base64enc_0.1-3-3_amd64.deb ... 279s Unpacking r-cran-base64enc (0.1-3-3) ... 279s Selecting previously unselected package r-cran-brio. 279s Preparing to unpack .../102-r-cran-brio_1.1.4-1_amd64.deb ... 279s Unpacking r-cran-brio (1.1.4-1) ... 279s Selecting previously unselected package r-cran-rlang. 279s Preparing to unpack .../103-r-cran-rlang_1.1.3-1_amd64.deb ... 279s Unpacking r-cran-rlang (1.1.3-1) ... 280s Selecting previously unselected package r-cran-fastmap. 280s Preparing to unpack .../104-r-cran-fastmap_1.1.1-1_amd64.deb ... 280s Unpacking r-cran-fastmap (1.1.1-1) ... 280s Selecting previously unselected package r-cran-cachem. 280s Preparing to unpack .../105-r-cran-cachem_1.0.8-1_amd64.deb ... 280s Unpacking r-cran-cachem (1.0.8-1) ... 280s Selecting previously unselected package r-cran-digest. 280s Preparing to unpack .../106-r-cran-digest_0.6.34-1_amd64.deb ... 280s Unpacking r-cran-digest (0.6.34-1) ... 280s Selecting previously unselected package r-cran-ellipsis. 280s Preparing to unpack .../107-r-cran-ellipsis_0.3.2-2_amd64.deb ... 280s Unpacking r-cran-ellipsis (0.3.2-2) ... 280s Selecting previously unselected package r-cran-htmltools. 280s Preparing to unpack .../108-r-cran-htmltools_0.5.7-1_amd64.deb ... 280s Unpacking r-cran-htmltools (0.5.7-1) ... 280s Selecting previously unselected package r-cran-jquerylib. 280s Preparing to unpack .../109-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 280s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 280s Selecting previously unselected package r-cran-jsonlite. 280s Preparing to unpack .../110-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 280s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 280s Selecting previously unselected package r-cran-cli. 280s Preparing to unpack .../111-r-cran-cli_3.6.2-1_amd64.deb ... 280s Unpacking r-cran-cli (3.6.2-1) ... 280s Selecting previously unselected package r-cran-glue. 280s Preparing to unpack .../112-r-cran-glue_1.7.0-1_amd64.deb ... 280s Unpacking r-cran-glue (1.7.0-1) ... 280s Selecting previously unselected package r-cran-lifecycle. 280s Preparing to unpack .../113-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 280s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 280s Selecting previously unselected package r-cran-memoise. 280s Preparing to unpack .../114-r-cran-memoise_2.0.1-1_all.deb ... 280s Unpacking r-cran-memoise (2.0.1-1) ... 280s Selecting previously unselected package r-cran-mime. 280s Preparing to unpack .../115-r-cran-mime_0.12-1_amd64.deb ... 280s Unpacking r-cran-mime (0.12-1) ... 280s Selecting previously unselected package r-cran-fs. 280s Preparing to unpack .../116-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 280s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 280s Selecting previously unselected package r-cran-r6. 280s Preparing to unpack .../117-r-cran-r6_2.5.1-1_all.deb ... 280s Unpacking r-cran-r6 (2.5.1-1) ... 280s Selecting previously unselected package r-cran-rappdirs. 280s Preparing to unpack .../118-r-cran-rappdirs_0.3.3-1_amd64.deb ... 280s Unpacking r-cran-rappdirs (0.3.3-1) ... 280s Selecting previously unselected package r-cran-sass. 280s Preparing to unpack .../119-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 280s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 280s Selecting previously unselected package r-cran-bslib. 280s Preparing to unpack .../120-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 280s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 280s Selecting previously unselected package r-cran-ps. 280s Preparing to unpack .../121-r-cran-ps_1.7.6-1_amd64.deb ... 280s Unpacking r-cran-ps (1.7.6-1) ... 280s Selecting previously unselected package r-cran-processx. 280s Preparing to unpack .../122-r-cran-processx_3.8.3-1_amd64.deb ... 280s Unpacking r-cran-processx (3.8.3-1) ... 280s Selecting previously unselected package r-cran-callr. 280s Preparing to unpack .../123-r-cran-callr_3.7.3-2_all.deb ... 280s Unpacking r-cran-callr (3.7.3-2) ... 280s Selecting previously unselected package r-cran-commonmark. 280s Preparing to unpack .../124-r-cran-commonmark_1.9.1-1_amd64.deb ... 280s Unpacking r-cran-commonmark (1.9.1-1) ... 280s Selecting previously unselected package r-cran-crayon. 280s Preparing to unpack .../125-r-cran-crayon_1.5.2-1_all.deb ... 280s Unpacking r-cran-crayon (1.5.2-1) ... 280s Selecting previously unselected package r-cran-desc. 281s Preparing to unpack .../126-r-cran-desc_1.4.3-1_all.deb ... 281s Unpacking r-cran-desc (1.4.3-1) ... 281s Selecting previously unselected package r-cran-dfoptim. 281s Preparing to unpack .../127-r-cran-dfoptim_2023.1.0-1_all.deb ... 281s Unpacking r-cran-dfoptim (2023.1.0-1) ... 281s Selecting previously unselected package r-cran-diffobj. 281s Preparing to unpack .../128-r-cran-diffobj_0.3.5-1_amd64.deb ... 281s Unpacking r-cran-diffobj (0.3.5-1) ... 281s Selecting previously unselected package r-cran-evaluate. 281s Preparing to unpack .../129-r-cran-evaluate_0.23-1_all.deb ... 281s Unpacking r-cran-evaluate (0.23-1) ... 281s Selecting previously unselected package r-cran-fansi. 281s Preparing to unpack .../130-r-cran-fansi_1.0.5-1_amd64.deb ... 281s Unpacking r-cran-fansi (1.0.5-1) ... 281s Selecting previously unselected package r-cran-fontawesome. 281s Preparing to unpack .../131-r-cran-fontawesome_0.5.2-1_all.deb ... 281s Unpacking r-cran-fontawesome (0.5.2-1) ... 281s Selecting previously unselected package r-cran-xfun. 281s Preparing to unpack .../132-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 281s Unpacking r-cran-xfun (0.41+dfsg-1) ... 281s Selecting previously unselected package r-cran-highr. 281s Preparing to unpack .../133-r-cran-highr_0.10+dfsg-1_all.deb ... 281s Unpacking r-cran-highr (0.10+dfsg-1) ... 281s Selecting previously unselected package r-cran-pkgkitten. 281s Preparing to unpack .../134-r-cran-pkgkitten_0.2.3-1_all.deb ... 281s Unpacking r-cran-pkgkitten (0.2.3-1) ... 281s Selecting previously unselected package r-cran-rcpp. 281s Preparing to unpack .../135-r-cran-rcpp_1.0.12-1_amd64.deb ... 281s Unpacking r-cran-rcpp (1.0.12-1) ... 281s Selecting previously unselected package r-cran-later. 281s Preparing to unpack .../136-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 281s Unpacking r-cran-later (1.3.2+dfsg-1) ... 281s Selecting previously unselected package r-cran-magrittr. 281s Preparing to unpack .../137-r-cran-magrittr_2.0.3-1_amd64.deb ... 281s Unpacking r-cran-magrittr (2.0.3-1) ... 281s Selecting previously unselected package r-cran-promises. 281s Preparing to unpack .../138-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 281s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 281s Selecting previously unselected package r-cran-httpuv. 281s Preparing to unpack .../139-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 281s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 281s Selecting previously unselected package r-cran-yaml. 281s Preparing to unpack .../140-r-cran-yaml_2.3.8-1_amd64.deb ... 281s Unpacking r-cran-yaml (2.3.8-1) ... 281s Selecting previously unselected package libjs-mathjax. 281s Preparing to unpack .../141-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 281s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 282s Selecting previously unselected package r-cran-knitr. 282s Preparing to unpack .../142-r-cran-knitr_1.45+dfsg-1_all.deb ... 282s Unpacking r-cran-knitr (1.45+dfsg-1) ... 282s Selecting previously unselected package r-cran-numderiv. 282s Preparing to unpack .../143-r-cran-numderiv_2016.8-1.1-3_all.deb ... 282s Unpacking r-cran-numderiv (2016.8-1.1-3) ... 282s Selecting previously unselected package r-cran-rcpparmadillo. 282s Preparing to unpack .../144-r-cran-rcpparmadillo_0.12.8.0.0-1_amd64.deb ... 282s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 282s Selecting previously unselected package r-cran-lbfgsb3c. 282s Preparing to unpack .../145-r-cran-lbfgsb3c_2020-3.3-1_amd64.deb ... 282s Unpacking r-cran-lbfgsb3c (2020-3.3-1) ... 282s Selecting previously unselected package r-cran-minqa. 282s Preparing to unpack .../146-r-cran-minqa_1.2.6-1_amd64.deb ... 282s Unpacking r-cran-minqa (1.2.6-1) ... 282s Selecting previously unselected package libnlopt0:amd64. 282s Preparing to unpack .../147-libnlopt0_2.7.1-5build2_amd64.deb ... 282s Unpacking libnlopt0:amd64 (2.7.1-5build2) ... 283s Selecting previously unselected package r-cran-pkgbuild. 283s Preparing to unpack .../148-r-cran-pkgbuild_1.4.3-1_all.deb ... 283s Unpacking r-cran-pkgbuild (1.4.3-1) ... 283s Selecting previously unselected package r-cran-rprojroot. 283s Preparing to unpack .../149-r-cran-rprojroot_2.0.4-1_all.deb ... 283s Unpacking r-cran-rprojroot (2.0.4-1) ... 283s Selecting previously unselected package r-cran-withr. 283s Preparing to unpack .../150-r-cran-withr_2.5.0-1_all.deb ... 283s Unpacking r-cran-withr (2.5.0-1) ... 283s Selecting previously unselected package r-cran-pkgload. 283s Preparing to unpack .../151-r-cran-pkgload_1.3.4-1_all.deb ... 283s Unpacking r-cran-pkgload (1.3.4-1) ... 283s Selecting previously unselected package r-cran-praise. 283s Preparing to unpack .../152-r-cran-praise_1.0.0-4build1_all.deb ... 283s Unpacking r-cran-praise (1.0.0-4build1) ... 283s Selecting previously unselected package r-cran-utf8. 283s Preparing to unpack .../153-r-cran-utf8_1.2.4-1_amd64.deb ... 283s Unpacking r-cran-utf8 (1.2.4-1) ... 283s Selecting previously unselected package r-cran-vctrs. 283s Preparing to unpack .../154-r-cran-vctrs_0.6.5-1_amd64.deb ... 283s Unpacking r-cran-vctrs (0.6.5-1) ... 283s Selecting previously unselected package r-cran-pillar. 283s Preparing to unpack .../155-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 283s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 283s Selecting previously unselected package r-cran-pkgconfig. 283s Preparing to unpack .../156-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 283s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 283s Selecting previously unselected package r-cran-tibble. 283s Preparing to unpack .../157-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 283s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 283s Selecting previously unselected package r-cran-rematch2. 283s Preparing to unpack .../158-r-cran-rematch2_2.1.2-2build1_all.deb ... 283s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 283s Selecting previously unselected package r-cran-waldo. 283s Preparing to unpack .../159-r-cran-waldo_0.5.2-1build1_all.deb ... 283s Unpacking r-cran-waldo (0.5.2-1build1) ... 283s Selecting previously unselected package r-cran-testthat. 283s Preparing to unpack .../160-r-cran-testthat_3.2.1-1_amd64.deb ... 283s Unpacking r-cran-testthat (3.2.1-1) ... 283s Selecting previously unselected package r-cran-nloptr. 283s Preparing to unpack .../161-r-cran-nloptr_2.0.3-1_amd64.deb ... 283s Unpacking r-cran-nloptr (2.0.3-1) ... 283s Selecting previously unselected package r-cran-pracma. 283s Preparing to unpack .../162-r-cran-pracma_2.4.4-1_all.deb ... 283s Unpacking r-cran-pracma (2.4.4-1) ... 283s Selecting previously unselected package r-cran-optimx. 283s Preparing to unpack .../163-r-cran-optimx_2023-10.21-1_all.deb ... 283s Unpacking r-cran-optimx (2023-10.21-1) ... 283s Selecting previously unselected package r-cran-r.methodss3. 283s Preparing to unpack .../164-r-cran-r.methodss3_1.8.2-1_all.deb ... 283s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 283s Selecting previously unselected package r-cran-r.oo. 283s Preparing to unpack .../165-r-cran-r.oo_1.26.0-1_all.deb ... 283s Unpacking r-cran-r.oo (1.26.0-1) ... 283s Selecting previously unselected package r-cran-r.utils. 283s Preparing to unpack .../166-r-cran-r.utils_2.12.3-1_all.deb ... 283s Unpacking r-cran-r.utils (2.12.3-1) ... 283s Selecting previously unselected package r-cran-r.cache. 283s Preparing to unpack .../167-r-cran-r.cache_0.16.0-1_all.deb ... 283s Unpacking r-cran-r.cache (0.16.0-1) ... 283s Selecting previously unselected package tcl8.6. 283s Preparing to unpack .../168-tcl8.6_8.6.13+dfsg-2_amd64.deb ... 283s Unpacking tcl8.6 (8.6.13+dfsg-2) ... 283s Selecting previously unselected package tcl. 284s Preparing to unpack .../169-tcl_8.6.13_amd64.deb ... 284s Unpacking tcl (8.6.13) ... 284s Selecting previously unselected package r-cran-r.rsp. 284s Preparing to unpack .../170-r-cran-r.rsp_0.46.0+ds-1_all.deb ... 284s Unpacking r-cran-r.rsp (0.46.0+ds-1) ... 284s Selecting previously unselected package r-cran-stringi. 284s Preparing to unpack .../171-r-cran-stringi_1.8.3-1_amd64.deb ... 284s Unpacking r-cran-stringi (1.8.3-1) ... 284s Selecting previously unselected package r-cran-stringr. 284s Preparing to unpack .../172-r-cran-stringr_1.5.1-1_all.deb ... 284s Unpacking r-cran-stringr (1.5.1-1) ... 284s Selecting previously unselected package r-cran-tinytex. 284s Preparing to unpack .../173-r-cran-tinytex_0.49-1_all.deb ... 284s Unpacking r-cran-tinytex (0.49-1) ... 284s Selecting previously unselected package libjs-modernizr. 284s Preparing to unpack .../174-libjs-modernizr_2.6.2+ds1-5_all.deb ... 284s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 284s Selecting previously unselected package r-cran-xtable. 284s Preparing to unpack .../175-r-cran-xtable_1%3a1.8-4-2_all.deb ... 284s Unpacking r-cran-xtable (1:1.8-4-2) ... 284s Selecting previously unselected package r-cran-sourcetools. 284s Preparing to unpack .../176-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 284s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 284s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 284s Preparing to unpack .../177-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 284s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 284s Selecting previously unselected package r-cran-shiny. 284s Preparing to unpack .../178-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 284s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 284s Selecting previously unselected package r-cran-rmarkdown. 284s Preparing to unpack .../179-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 284s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 284s Selecting previously unselected package r-cran-setrng. 284s Preparing to unpack .../180-r-cran-setrng_2022.4-1-1_all.deb ... 284s Unpacking r-cran-setrng (2022.4-1-1) ... 284s Selecting previously unselected package r-cran-ucminf. 284s Preparing to unpack .../181-r-cran-ucminf_1.2.1-1_amd64.deb ... 284s Unpacking r-cran-ucminf (1.2.1-1) ... 284s Setting up libjs-json 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285s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 285s Setting up libnlopt0:amd64 (2.7.1-5build2) ... 285s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 285s Setting up libxcb-shm0:amd64 (1.15-1) ... 285s Setting up libpaper-utils (1.1.29) ... 285s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ... 285s Setting up libjs-modernizr (2.6.2+ds1-5) ... 285s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ... 285s Setting up libjs-es5-shim (4.6.7-2) ... 285s Setting up zip (3.0-13) ... 285s Setting up libblas3:amd64 (3.12.0-3) ... 285s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 285s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 285s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ... 285s Setting up libjs-d3 (3.5.17-4) ... 285s Setting up fonts-dejavu-mono (2.37-8) ... 285s Setting up libmpc3:amd64 (1.3.1-1) ... 285s Setting up libatomic1:amd64 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libtsan2:amd64 (14-20240303-1ubuntu1) ... 285s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 285s Setting up libisl23:amd64 (0.26-3) ... 285s Setting up libc-dev-bin (2.39-0ubuntu6) ... 285s Setting up node-normalize.css (8.0.1-5) ... 285s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 285s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 285s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 285s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 285s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 285s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 285s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 285s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 285s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 285s Setting up libice6:amd64 (2:1.0.10-1build2) ... 285s Setting up tcl8.6 (8.6.13+dfsg-2) ... 285s Setting up liblapack3:amd64 (3.12.0-3) ... 285s update-alternatives: using 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 91471 files and directories currently installed.) 296s Preparing to unpack .../2-autopkgtest-satdep.deb ... 296s Unpacking autopkgtest-satdep (0) ... 296s Setting up autopkgtest-satdep (0) ... 298s (Reading database ... 91471 files and directories currently installed.) 298s Removing autopkgtest-satdep (0) ... 298s autopkgtest [09:57:47]: test run-unit-test: [----------------------- 298s BEGIN TEST argclash.R 298s 298s R version 4.3.2 (2023-10-31) -- "Eye Holes" 298s Copyright (C) 2023 The R Foundation for Statistical Computing 298s Platform: x86_64-pc-linux-gnu (64-bit) 298s 298s R is free software and comes with ABSOLUTELY NO WARRANTY. 298s You are welcome to redistribute it under certain conditions. 298s Type 'license()' or 'licence()' for distribution details. 298s 298s R is a collaborative project with many contributors. 298s Type 'contributors()' for more information and 298s 'citation()' on how to cite R or R packages in publications. 298s 298s Type 'demo()' for some demos, 'help()' for on-line help, or 298s 'help.start()' for an HTML browser interface to help. 298s Type 'q()' to quit R. 298s 298s > # argclash.R -- Try to work around dotargs that have a name that clashes 298s > # with variable names in function calls 298s > # J C Nash 2021-12-16 298s > # Trying to fix issue raised in 298s > # https://stackoverflow.com/questions/69033754/maximum-likelihood-estimation-of-three-parameter-reverse-weibull-model-implement/70382556#70382556 298s > # WARNING: It is NOT certain that all name clashes between dotargs and other names 298s > # in functions in optimx will be avoided by the current mechanisms. 298s > # This script does, however, show some tests 298s > rm(list=ls()) # In case we want to ensure clear workspace, delete first # 298s > sqmod<-function(z, x){ 298s + nn<-length(z) 298s + yy<-x^(1:nn) 298s + f<-sum((yy-z)^2) 298s + # cat("Fv=",f," at ") 298s + # print(z) 298s + f 298s + } 298s > sqmod.g <- function(z, x){ 298s + nn<-length(z) 298s + yy<-x^(1:nn) 298s + gg<- 2*(z - yy) 298s + } 298s > 298s > require(optimx) 298s Loading required package: optimx 298s Loading required package: numDeriv 298s > require(numDeriv) 298s > sessionInfo() 298s R version 4.3.2 (2023-10-31) 298s Platform: x86_64-pc-linux-gnu (64-bit) 298s Running under: Ubuntu Noble Numbat (development branch) 298s 298s Matrix products: default 298s BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.12.0 298s LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0 298s 298s locale: 298s [1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8 298s [4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8 298s [7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C 298s [10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C 298s 298s time zone: Etc/UTC 298s tzcode source: system (glibc) 298s 298s attached base packages: 298s [1] stats graphics grDevices utils datasets methods base 298s 298s other attached packages: 298s [1] numDeriv_2016.8-1.1 optimx_2023-10.21 298s 298s loaded via a namespace (and not attached): 298s [1] compiler_4.3.2 nloptr_2.0.3 pracma_2.4.4 298s > nn<-2 298s > st<-rep(0.5, nn) 298s > # See if optimx() can handle the clash. 298s > 298s > t2 <- optimx(st, fn=sqmod, x=2) 298s > t2 298s p1 p2 value fevals gevals niter convcode kkt1 298s Nelder-Mead 1.999981 4.000296 8.808035e-08 69 NA NA 0 TRUE 298s BFGS 2.000000 4.000000 6.669752e-25 12 3 NA 0 TRUE 298s kkt2 xtime 298s Nelder-Mead TRUE 0.016 298s BFGS TRUE 0.000 298s > o1 <- optim(st, fn=sqmod, x=2) 298s > o1 298s $par 298s [1] 1.999981 4.000296 298s 298s $value 298s [1] 8.808035e-08 298s 298s $counts 298s function gradient 298s 69 NA 298s 298s $convergence 298s [1] 0 298s 298s $message 298s NULL 298s 298s > 298s > # Try grchk -- The argclash is fixed in the optimx.run code and in optimr(). 298s > tgr <- try(grchk(xpar=st, ffn=sqmod, ggr=sqmod.g, trace=2, x=2)) 298s Gradient test with tolerance = 6.055454e-06 298s Analytic gradient uses function sqmod.g 298s function at parameters = 14.5 with attributes: 298s NULL 298s Compute analytic gradient 298s [1] -3 -7 298s Compute numeric gradient 298s [1] -3 -7 298s gradient test tolerance = 6.055454e-06 fval= 14.5 298s compare to max(abs(gn-ga))/(1+abs(fval)) = 2.321515e-11 298s > tgr 298s [1] TRUE 298s attr(,"ga") 298s [1] -3 -7 298s attr(,"gn") 298s [1] -3 -7 298s attr(,"maxdiff") 298s [1] 3.598348e-10 298s > # One way that x gets into the dot arguments 298s > xval <- 2 298s > sqmod1 <- function(z){ sqmod(z, x=xval) } 298s > # Another way 298s > dots <- list(x=2) 298s > str(dots) 298s List of 1 298s $ x: num 2 298s > sqmod2 <- function(z){ sqmod(z, unlist(dots)) } 298s > # simple test 298s > x <- c(1,3) 298s > # Note that x is a listed argument (the 2nd) of numDeriv::grad() 298s > tryg1 <- grad(sqmod1, x ) 298s > tryg1 298s [1] -2 -2 298s > eg1<-sqmod.g(z=x, x=xval) 298s > eg1 298s [1] -2 -2 298s > 298s > cat("sqmod2 for x=2:", sqmod2(x), "\n") 298s sqmod2 for x=2: 2 298s > tryg2 <- grad(sqmod2, x ) 298s > tryg2 298s [1] -2 -2 298s > 298s > x<-2.0 298s > t2x <- optimx(st, fn=sqmod, x=x) 299s > t2x 299s p1 p2 value fevals gevals niter convcode kkt1 299s Nelder-Mead 1.999981 4.000296 8.808035e-08 69 NA NA 0 TRUE 299s BFGS 2.000000 4.000000 6.669752e-25 12 3 NA 0 TRUE 299s kkt2 xtime 299s Nelder-Mead TRUE 0 299s BFGS TRUE 0 299s > 299s > t2fm <- optimx(st, fn=sqmod, method="BFGS", x=2) 299s > t2fm 299s p1 p2 value fevals gevals niter convcode kkt1 kkt2 xtime 299s BFGS 2 4 6.669752e-25 12 3 NA 0 TRUE TRUE 0 299s > 299s > # Following illustrates collision of arguments in gradient after solve 299s > t2fgm <- try(optimx(st, fn=sqmod, gr=sqmod.g, method="BFGS", x=2)) 299s > t2fgm 299s p1 p2 value fevals gevals niter convcode kkt1 kkt2 xtime 299s BFGS 2 4 3.204747e-30 5 3 NA 0 TRUE TRUE 0 299s > 299s > 299s > r2 <- optimr(st, fn=sqmod, gr=sqmod.g, method="Rvmmin", control=list(trace=0), x=2) 299s > proptimr(r2) 299s Result r2 ( Rvmmin -> sqmod ) calc. min. = 7.888609e-31 at 299s 2 4 299s After 4 fn evals, and 3 gr evals and 0 hessian evals 299s Termination code is 2 : Rvmminu appears to have converged 299s 299s ------------------------------------------------- 299s > 299s > 299s > x<-2.0 299s > r2xn <- optimr(st, fn=sqmod, gr="grfwd", method="Rvmmin", control=list(trace=0), x=x) 299s > proptimr(r2xn) 299s Result r2xn ( Rvmmin -> sqmod ) calc. min. = 4.727609e-12 at 299s 1.999999 3.999998 299s After 57 fn evals, and 15 gr evals and 0 hessian evals 299s Termination code is 0 : Rvmminu appears to have converged 299s 299s ------------------------------------------------- 299s > 299s > t2g <- optimx(st, fn=sqmod, gr=sqmod.g, control=list(trace=0), x=2) 299s > t2g 299s p1 p2 value fevals gevals niter convcode kkt1 299s Nelder-Mead 1.999981 4.000296 8.808035e-08 69 NA NA 0 TRUE 299s BFGS 2.000000 4.000000 3.204747e-30 5 3 NA 0 TRUE 299s kkt2 xtime 299s Nelder-Mead TRUE 0.000 299s BFGS TRUE 0.001 299s > x<-2.0 299s > t2gn <- optimx(st, fn=sqmod,control=list(trace=0), x=x) 299s > t2gn 299s p1 p2 value fevals gevals niter convcode kkt1 299s Nelder-Mead 1.999981 4.000296 8.808035e-08 69 NA NA 0 TRUE 299s BFGS 2.000000 4.000000 6.669752e-25 12 3 NA 0 TRUE 299s kkt2 xtime 299s Nelder-Mead TRUE 0 299s BFGS TRUE 0 299s > 299s > ## Explicit try 299s > xtry<-grchk(xpar=st, ffn=sqmod, ggr=sqmod.g, trace=0, testtol=(.Machine$double.eps^(1/3)), x=x) 299s > xtry 299s [1] TRUE 299s attr(,"ga") 299s [1] -3 -7 299s attr(,"gn") 299s [1] -3 -7 299s attr(,"maxdiff") 299s [1] 3.598348e-10 299s > 299s > r2g <- optimr(st, fn=sqmod, gr=sqmod.g, method="Rvmmin", control=list(trace=0), x=2) 299s > proptimr(r2g) 299s Result r2g ( Rvmmin -> sqmod ) calc. min. = 7.888609e-31 at 299s 2 4 299s After 4 fn evals, and 3 gr evals and 0 hessian evals 299s Termination code is 2 : Rvmminu appears to have converged 299s 299s ------------------------------------------------- 299s > x<-2.0 299s > r2xf <- optimr(st, fn=sqmod, gr="grfwd", method="Rvmmin", control=list(trace=0), x=x) 299s > proptimr(r2xf) 299s Result r2xf ( Rvmmin -> sqmod ) calc. min. = 4.727609e-12 at 299s 1.999999 3.999998 299s After 57 fn evals, and 15 gr evals and 0 hessian evals 299s Termination code is 0 : Rvmminu appears to have converged 299s 299s ------------------------------------------------- 299s > 299s > 299s BEGIN TEST bdstest.R 299s 299s R version 4.3.2 (2023-10-31) -- "Eye Holes" 299s Copyright (C) 2023 The R Foundation for Statistical Computing 299s Platform: x86_64-pc-linux-gnu (64-bit) 299s 299s R is free software and comes with ABSOLUTELY NO WARRANTY. 299s You are welcome to redistribute it under certain conditions. 299s Type 'license()' or 'licence()' for distribution details. 299s 299s R is a collaborative project with many contributors. 299s Type 'contributors()' for more information and 299s 'citation()' on how to cite R or R packages in publications. 299s 299s Type 'demo()' for some demos, 'help()' for on-line help, or 299s 'help.start()' for an HTML browser interface to help. 299s Type 'q()' to quit R. 299s 299s > # rm(list=ls()) 299s > ## author: John C. Nash 299s > # fname<-paste(format(Sys.time(), "%Y%m%d%H%M"),"-btnvm.out",sep='') 299s > # sink(fname, append=TRUE, split=TRUE) 299s > require("optimx") 299s Loading required package: optimx 299s > # Following is used when starting from opx21 directory 299s > # source("optimx/tests/simplefun.R") 299s > # Following is for use in package testing 299s > # Simple Test Function 1: 299s > simfun.f = function(x) { 299s + fun <- sum(x^2 ) 299s + # print(c(x = x, fun = fun)) 299s + fun 299s + } 299s > simfun.g = function(x) { 299s + grad<-2.0*x 299s + grad 299s + } 299s > simfun.h = function(x) { 299s + n<-length(x) 299s + t<-rep(2.0,n) 299s + hess<-diag(t) 299s + } 299s > sessionInfo() 299s R version 4.3.2 (2023-10-31) 299s Platform: x86_64-pc-linux-gnu (64-bit) 299s Running under: Ubuntu Noble Numbat (development branch) 299s 299s Matrix products: default 299s BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.12.0 299s LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0 299s 299s locale: 299s [1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8 299s [4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8 299s [7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C 299s [10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C 299s 299s time zone: Etc/UTC 299s tzcode source: system (glibc) 299s 299s attached base packages: 299s [1] stats graphics grDevices utils datasets methods base 299s 299s other attached packages: 299s [1] optimx_2023-10.21 299s 299s loaded via a namespace (and not attached): 299s [1] compiler_4.3.2 nloptr_2.0.3 numDeriv_2016.8-1.1 299s [4] pracma_2.4.4 299s > ##################### 299s > 299s > # This test script illustrates the use of bounds in optimr() with the 299s > # optimizers nvm and L-BFGS-B, as well as a Kuhn Karush Tucker check 299s > # on the final parameters from the second optimization. 299s > # Masks are tested at the very end for the two methods for which they are 299s > # available. Note that they must be called via the opm() function. 299s > 299s > 299s > n<-4 299s > lower<-rep(0,n) 299s > upper<-lower # to get arrays set 299s > bdmsk<-rep(1,n) 299s > # bdmsk[(trunc(n/2)+1)]<-0 299s > for (i in 1:n) { 299s + lower[i]<-1.0*(i-1)*(n-1)/n 299s + upper[i]<-1.0*i*(n+1)/n 299s + } 299s > xx<-0.5*(lower+upper) 299s > 299s > cat("lower bounds:") 299s lower bounds:> print(lower) 299s [1] 0.00 0.75 1.50 2.25 299s > cat("start: ") 299s start: > print(xx) 299s [1] 0.625 1.625 2.625 3.625 299s > cat("upper bounds:") 299s upper bounds:> print(upper) 299s [1] 1.25 2.50 3.75 5.00 299s > 299s > cat("nvm\n") # changed from Rvmmin 2023-10-22 299s nvm 299s > 299s > abtrvm <- optimr(xx, simfun.f, simfun.g, lower=lower, upper=upper, 299s + method="nvm", control=list(trace=0)) 299s > # Note: use lower=lower etc. because there is a missing hess= argument 299s > proptimr(abtrvm) 299s Result abtrvm ( nvm -> (no_name) ) calc. min. = 7.875 at 299s 0 L 0.75 L 1.5 L 2.25 L 299s After 8 fn evals, and 8 gr evals and 0 hessian evals 299s Termination code is 2 : NA 299s 299s ------------------------------------------------- 299s > 299s > cat("Axial search") 299s Axial search> axabtrvm <- axsearch(abtrvm$par, fn=simfun.f, fmin=abtrvm$value, lower, upper, bdmsk=NULL) 299s > print(axabtrvm) 299s $bestfn 299s [1] 7.875 299s attr(,"fname") 299s [1] "(no_name)" 299s attr(,"method") 299s [1] "nvm" 299s attr(,"ptype") 299s [1] "C" 299s 299s $par 299s [1] 0.00 0.75 1.50 2.25 299s attr(,"status") 299s [1] "L" "L" "L" "L" 299s 299s $details 299s par0 fback rep.fmin..npar. ffwd parstep tilt roc 299s 1 0.00 NA 7.875 7.875000 3.666853e-07 90 NaN 299s 2 0.75 NA 7.875 7.875682 4.545258e-04 90 NaN 299s 3 1.50 NA 7.875 7.877727 9.086849e-04 90 NaN 299s 4 2.25 NA 7.875 7.881135 1.362844e-03 90 NaN 299s 299s > 299s > cat("Now force an early stop\n") 299s Now force an early stop 299s > abtrvm1 <- optimr(xx, simfun.f, simfun.g, lower=lower, upper=upper, method="nvm", 299s + control=list(maxit=1, trace=0)) 299s > print(abtrvm1) 299s $par 299s Warning message: 299s In nvm(par = spar, fn = efn, gr = egr, bds = bdmsk, control = mcontrol) : 299s Too many gradient evaluations 299s [1] 0.625 1.625 2.625 3.625 299s attr(,"status") 299s [1] " " " " " " " " 299s 299s $value 299s [1] 8.884958 299s attr(,"fname") 299s [1] "(no_name)" 299s attr(,"method") 299s [1] "nvm" 299s attr(,"ptype") 299s [1] "C" 299s 299s $counts 299s function gradient 299s 2 2 299s 299s $convergence 299s [1] 1 299s 299s $message 299s [1] NA 299s 299s $scounts 299s [1] 2 2 0 299s 299s > cat("Axial search") 299s Axial search> axabtrvm1 <- axsearch(abtrvm1$par, fn=simfun.f, fmin=abtrvm1$value, lower, upper, bdmsk=NULL) 299s > print(axabtrvm1) 299s $bestfn 299s [1] 8.884958 299s attr(,"fname") 299s [1] "(no_name)" 299s attr(,"method") 299s [1] "nvm" 299s attr(,"ptype") 299s [1] "C" 299s 299s $par 299s [1] 0.625 1.625 2.625 3.625 299s attr(,"status") 299s [1] " " " " " " " " 299s 299s $details 299s par0 fback rep.fmin..npar. ffwd parstep tilt roc 299s 1 0.625 23.06203 8.884958 23.06297 0.0003788326 -51.34019 4.152308e-08 299s 2 1.625 23.05930 8.884958 23.06570 0.0009843780 -72.89727 2.687203e-06 299s 3 2.625 23.05416 8.884958 23.07085 0.0015899235 -79.21570 2.721735e-05 299s 4 3.625 23.04659 8.884958 23.07842 0.0021954689 -82.14669 1.332738e-04 299s 299s > 299s > 299s > cat("Maximization test\n") 299s Maximization test 299s > mabtrvm <- optimr(xx, simfun.f, simfun.g, lower=lower, upper=upper, method="nvm", 299s + control=list(trace=1, maximize=TRUE)) 299s admissible = TRUE 299s maskadded = FALSE 299s parchanged = FALSE 299s Parameter scaling:[1] 1 1 1 1 299s nvm -- J C Nash 2009-2015 - an R implementation of Alg 21 299s Problem of size n= 4 299s Initial fn= -23.0625 299s ig= 1 gnorm= 9.604686 1 1 -23.0625 299s ig= 2 gnorm= 8.689381 2 2 -43.87634 299s No acceptable point 299s Reset to gradient search 299s 2 2 -43.87634 299s ig= 3 gnorm= 4.974424 3 3 -45.24872 299s No acceptable point 299s Reset to gradient search 299s 3 3 -45.24872 299s ig= 4 gnorm= 1.923077 4 4 -46.23706 299s No acceptable point 299s Reset to gradient search 299s 4 4 -46.23706 299s ig= 5 gnorm= 0 Seem to be done nvm 299s admissible = TRUE 299s maskadded = FALSE 299s parchanged = FALSE 299s At least one parameter is on a bound 299s existing parameter status:[1] "?" "?" "?" "?" 299s > # Note: use lower=lower etc. because there is a missing hess= argument 299s > print(mabtrvm) 299s $par 299s [1] 1.25 2.50 3.75 5.00 299s attr(,"status") 299s [1] "U" "U" "U" "U" 299s 299s $value 299s [1] 46.875 299s attr(,"fname") 299s [1] "(no_name)" 299s attr(,"method") 299s [1] "nvm" 299s attr(,"ptype") 299s [1] "C" 299s 299s $counts 299s function gradient 299s 5 5 299s 299s $convergence 299s [1] 2 299s 299s $message 299s [1] NA 299s 299s $scounts 299s [1] 5 5 0 299s 299s > cat("Do NOT try axsearch() with maximize\n") 299s Do NOT try axsearch() with maximize 299s > cat("KKT condition check\n") 299s KKT condition check 299s > akktm <- kktchk(mabtrvm$par, simfun.f, simfun.g, hess=NULL, upper=upper, lower=lower, 299s + maximize=TRUE, control=list(trace=0)) 299s > print(akktm) 299s $gmax 299s [1]Warning message: 299s In kktchk(mabtrvm$par, simfun.f, simfun.g, hess = NULL, upper = upper, : 299s All parameters are constrained 299s 0 299s 299s $evratio 299s [1] NA 299s 299s $kkt1 299s [1] TRUE 299s 299s $kkt2 299s [1] TRUE 299s 299s $hev 299s [1] 0 0 0 0 299s 299s $ngatend 299s [1] 2.5 5.0 7.5 10.0 299s attr(,"status") 299s [1] "U" "U" "U" "U" 299s 299s $nhatend 299s [,1] [,2] [,3] [,4] 299s [1,] -2 0 0 0 299s [2,] 0 -2 0 0 299s [3,] 0 0 -2 0 299s [4,] 0 0 0 -2 299s 299s > 299s > alb<-optimr(xx,simfun.f, simfun.g, lower=lower, upper=upper, method="L-BFGS-B", 299s + control=list(trace=0)) 299s > print(alb) 299s $par 299s [1] 0.00 0.75 1.50 2.25 299s attr(,"status") 299s [1] "L" "L" "L" "L" 299s 299s $value 299s [1] 7.875 299s attr(,"fname") 299s [1] "(no_name)" 299s attr(,"method") 299s [1] "L-BFGS-B" 299s attr(,"ptype") 299s [1] "C" 299s 299s $counts 299s function gradient 299s 2 2 299s 299s $convergence 299s [1] 0 299s 299s $message 299s [1] "CONVERGENCE: NORM OF PROJECTED GRADIENT <= PGTOL" 299s 299s $scounts 299s [1] 2 2 0 299s 299s > 299s > cat("KKT condition check\n") 299s KKT condition check 299s > alkkt <- kktchk(alb$par, simfun.f, simfun.g, hess=NULL, upper=upper, lower=lower, maximize=FALSE, control=list(trace=0)) 299s > print(alkkt) 299s $gmax 299s [1] 0 299s 299s $evratio 299s [1] NA 299s 299s $kkt1 299s [1] TRUE 299s 299s $kkt2 299s [1] TRUE 299s 299s $hev 299s [1] 0 0 0 0 299s 299s $ngatend 299s [1] 0.0 1.5 3.0 4.5 299s attr(,"status") 299s [1] "L" "L" "L" "L" 299s 299s $nhatend 299s [,1] [,2] [,3] [,4] 299s [1,] 2 0 0 0 299s [2,] 0 2 0 0 299s [3,] 0 0 2 0 299s [4,] 0 0 0 2 299s 299s > 299s > alhn<-optimr(xx, simfun.f, lower=lower, upper=upper, method="hjn", 299s + control=list(trace=0)) 299s Warning message: 299s In kktchk(alb$par, simfun.f, simfun.g, hess = NULL, upper = upper, : 299s All parameters are constrained 299s > print(alhn) 299s $par 299s [1] 0.00 0.75 1.50 2.25 299s attr(,"status") 299s [1] "L" "L" "L" "L" 299s 299s $value 299s [1] 7.875 299s attr(,"fname") 299s [1] "(no_name)" 299s attr(,"method") 299s [1] "hjn" 299s attr(,"ptype") 299s [1] "C" 299s 299s $counts 299s [1] 70 NA 299s 299s $convergence 299s [1] 0 299s 299s $message 299s [1] "hjn success" 299s 299s $scounts 299s [1] 70 0 0 299s 299s > 299s > #sink() 299s > cat("All bounded methods attempt with opm\n") # ?? should give errors 299s All bounded methods attempt with opm 299s > allbds <- opm(xx, simfun.f, simfun.g, lower=lower, upper=upper, method="MOST", control=list(trace=0)) 299s Non-bounds methods requested:[1] "Nelder-Mead" "nlm" "ucminf" "subplex" "mla" 299s [6] "pracmanm" 299s Error in loadNamespace(x) : there is no package called ‘BB’ 299s In addition: Warning messages: 299s 1: In opm(xx, simfun.f, simfun.g, lower = lower, upper = upper, method = "MOST", : 299s A method requested does not handle bounds 299s 2: In opm(xx, simfun.f, simfun.g, lower = lower, upper = upper, method = "MOST", : 299s 'snewtm' removed from 'method' -- no hess() 299s 3: In checksolver(method, control$allmeth, control$allpkg) : 299s Package BB for method spg( is not available 300s > print(summary(allbds, order=value)) 300s Warning message: 300s In minqa::bobyqa(par = spar, fn = efn, lower = slower, upper = supper, : 300s All upper - lower must be >= 2*rhobeg. Changing rhobeg 300s p1 s1 p2 s2 p3 s3 p4 s4 value fevals gevals hevals 300s nlminb 0.0000e+00 L 0.75 L 1.5 L 2.25 L 7.8750e+00 4 2 0 300s lbfgsb3c 0.0000e+00 L 0.75 L 1.5 L 2.25 L 7.8750e+00 3 3 0 300s Rtnmin 0.0000e+00 L 0.75 L 1.5 L 2.25 L 7.8750e+00 11 11 0 300s bobyqa 0.0000e+00 L 0.75 L 1.5 L 2.25 L 7.8750e+00 30 0 0 300s ncg 0.0000e+00 L 0.75 L 1.5 L 2.25 L 7.8750e+00 9 8 0 300s Rcgmin 0.0000e+00 L 0.75 L 1.5 L 2.25 L 7.8750e+00 9 8 0 300s nvm 0.0000e+00 L 0.75 L 1.5 L 2.25 L 7.8750e+00 8 8 0 300s Rvmmin 0.0000e+00 L 0.75 L 1.5 L 2.25 L 7.8750e+00 8 8 0 300s slsqp 5.2180e-15 0.75 L 1.5 L 2.25 L 7.8750e+00 16 15 0 300s tnewt 0.0000e+00 L 0.75 L 1.5 L 2.25 L 7.8750e+00 7 6 0 300s nmkb 5.4088e-08 0.75 L 1.5 L 2.25 L 7.8750e+00 62 0 0 300s nlnm 0.0000e+00 L 0.75 L 1.5 2.25 L 7.8750e+00 1343 0 0 300s spg NA NA NA NA 8.9885e+307 0 0 0 300s conv kkt1 kkt2 xtime 300s nlminb 0 FALSE TRUE 0.002 300s lbfgsb3c 0 FALSE TRUE 0.094 300s Rtnmin 0 FALSE TRUE 0.004 300s bobyqa 0 FALSE TRUE 0.005 300s ncg 0 FALSE TRUE 0.001 300s Rcgmin 0 FALSE TRUE 0.002 300s nvm 2 FALSE TRUE 0.001 300s Rvmmin 2 FALSE TRUE 0.004 300s slsqp 0 FALSE TRUE 0.005 300s tnewt 0 FALSE TRUE 0.003 300s nmkb 0 FALSE TRUE 0.005 300s nlnm 0 FALSE TRUE 0.008 300s spg 9999 NA NA 0.002 300s > 300s > cat("Now force a mask upper=lower for parameter 3 and see what happens\n") 300s Now force a mask upper=lower for parameter 3 and see what happens 300s > lower[3] <- upper[3] 300s > xx[3] <- lower[3] # MUST reset parameter also 300s > 300s > 300s > ncgbdm <- optimr(xx, simfun.f, simfun.g, lower=lower, upper=upper, method="ncg", 300s + control=list(trace=1, watch=TRUE)) 300s admissible = TRUE 300s Imposing mask as lower ~= upper for following parameters 300s [1] 3 300s maskadded = TRUE 300s parchanged = FALSE 300s At least one parameter is on a bound 300s Parameter scaling:[1] 1 1 1 1 300s Masks present 300s ncg -- J C Nash 2023 - bounds constraint version of new CG 300s an R implementation of Alg 22 with Yuan/Dai modification 300s stepredn = 0.2 300s Initial function value= 30.234 300s Initial fn= 30.234 300s 1 0 1 30.234 last decrease= NA 300s 3 1 2 20.293 last decrease= 9.9416 300s Yuan/Dai cycle reset 300s 3 2 1 20.293 last decrease= NA 300s 5 3 2 19.771 last decrease= 0.5221 300s Yuan/Dai cycle reset 300s 5 4 1 19.771 last decrease= NA 300s 7 5 2 19.688 last decrease= 0.08321 300s Very small gradient -- gradsqr = 0 300s ncg seems to have converged 300s admissible = TRUE 300s Imposing mask as lower ~= upper for following parameters 300s [1] 3 300s maskadded = TRUE 300s parchanged = FALSE 300s At least one parameter is on a bound 300s existing parameter status:[1] "?" "?" "?" "?" 300s > proptimr(ncgbdm) 300s Result ncgbdm ( ncg -> (no_name) ) calc. min. = 19.688 at 300s 0 L 0.75 L 3.75 M 2.25 L 300s After 7 fn evals, and 6 gr evals and 0 hessian evals 300s Termination code is 0 : NA 300s 300s ------------------------------------------------- 300s > 300s > ## lbfmsk <- optim(xx, simfun.f, simfun.g, lower=lower, upper=upper, method="L-BFGS-B", 300s > ## control=list(trace=1, watch=TRUE)) 300s > ## proptimr(ncgbdm) 300s > 300s > allbdm <- try(opm(xx, simfun.f, simfun.g, lower=lower, upper=upper, method="MOST", 300s + control=list(trace=2))) 300s opm: wrapper to call optimr to run multiple optimizers 300s Non-bounds methods requested:[1] "Nelder-Mead" "nlm" "ucminf" "subplex" "mla" 300s [6] "pracmanm" 300s Method: nlminb 300s Initial parameters:[1] 0.625 1.625 3.750 3.625 300s admissible = TRUE 300s Imposing mask as lower ~= upper for following parameters 300s [1] 3 300s maskadded = TRUE 300s lower:[1] 0.00 0.75 3.75 2.25 300s upper:[1] 1.25 2.50 3.75 5.00 300s parchanged = FALSE 300s At least one parameter is on a bound 300s Parameter scaling:[1] 1 1 1 1 300s Masks present 300s 0: 30.234375: 0.625000 1.62500 3.75000 3.62500 300s 1: 19.687500: 0.00000 0.750000 3.75000 2.25000 300s 2: 19.687500: 0.00000 0.750000 3.75000 2.25000 300s Initial parameters:[1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "?" "?" "?" "?" 300s admissible = TRUE 300s Imposing mask as lower ~= upper for following parameters 300s [1] 3 300s maskadded = TRUE 300s lower:[1] 0.00 0.75 3.75 2.25 300s upper:[1] 1.25 2.50 3.75 5.00 300s parchanged = FALSE 300s At least one parameter is on a bound 300s existing parameter status:[1] "?" "?" "?" "?" 300s Post processing for method nlminb 300s Successful convergence! 300s kktchk: kkttol= 0.001 kkt2tol= 1e-06 control$trace= 2 300s KKT condition testing 300s Number of parameters = 4 fval = 19.688 300s Initial parameters:[1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s parchanged = FALSE 300s existing parameter status:[1] "L" "L" "M" "L" 300s Number of free parameters = 4 300s gradient:[1] 0.0 1.5 7.5 4.5 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s projected gradient:[1] 0.0 1.5 7.5 4.5 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s max abs projected gradient element = 7.5 test tol = 0.020688 300s KKT1 result = FALSE 300s Hessian eigenvalues of constrained Hessian: 300s [1] 2 2 2 2 300s KKT2 result = TRUE 300s Save results from method nlminb 300s $par 300s [1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s 300s $convergence 300s [1] 0 300s 300s $message 300s [1] "both X-convergence and relative convergence (5)" 300s 300s $value 300s [1] 19.688 300s attr(,"fname") 300s [1] "(no_name)" 300s attr(,"method") 300s [1] "nlminb" 300s attr(,"ptype") 300s [1] "C" 300s 300s $counts 300s [1] 3 2 300s 300s $scounts 300s [1] 4 2 0 300s 300s $gevals 300s [1] 2 300s 300s $fevals 300s [1] 4 300s 300s $hevals 300s [1] 0 300s 300s $kkt1 300s [1] FALSE 300s 300s $kkt2 300s [1] TRUE 300s 300s $xtimes 300s user.self 300s 0.001 300s 300s Method: lbfgsb3c 300s Initial parameters:[1] 0.625 1.625 3.750 3.625 300s admissible = TRUE 300s Imposing mask as lower ~= upper for following parameters 300s [1] 3 300s maskadded = TRUE 300s lower:[1] 0.00 0.75 3.75 2.25 300s upper:[1] 1.25 2.50 3.75 5.00 300s parchanged = FALSE 300s At least one parameter is on a bound 300s Parameter scaling:[1] 1 1 1 1 300s Timing stopped at: 0.001 0 0.001 300s Error in optimr(par, fn, gr, hess = hess, method = meth, lower = lower, : 300s Method lbfgsb3c cannot handle masked (fixed) parameters 300s In addition: Warning messages: 300s 1: In opm(xx, simfun.f, simfun.g, lower = lower, upper = upper, method = "MOST", : 300s A method requested does not handle bounds 300s 2: In opm(xx, simfun.f, simfun.g, lower = lower, upper = upper, method = "MOST", : 300s 'snewtm' removed from 'method' -- no hess() 300s > print(summary(allbdm, order=value)) 300s Length Class Mode 300s 1 try-error character 300s > 300s > mmth <- ctrldefault(2)$maskmeth 300s > allmsk <- try(opm(xx, simfun.f, simfun.g, lower=lower, upper=upper, method=mmth, 300s + control=list(trace=2))) 300s opm: wrapper to call optimr to run multiple optimizers 300s Method: Rcgmin 300s Initial parameters:[1] 0.625 1.625 3.750 3.625 300s admissible = TRUE 300s Imposing mask as lower ~= upper for following parameters 300s [1] 3 300s maskadded = TRUE 300s lower:[1] 0.00 0.75 3.75 2.25 300s upper:[1] 1.25 2.50 3.75 5.00 300s parchanged = FALSE 300s At least one parameter is on a bound 300s Parameter scaling:[1] 1 1 1 1 300s Masks present 300s Rcgmin -- J C Nash 2009 - bounds constraint version of new CG 300s an R implementation of Alg 22 with Yuan/Dai modification 300s Initial function value= 30.234 300s Initial fn= 30.234 300s 1 0 1 30.234 last decrease= NA 300s Parameter 1 is free 300s Parameter 2 is free 300s Parameter 4 is free 300s Gradsqr = 64.688 g1, g2 64.688 0 fmin= 30.234 300s Gradproj = -64.688 300s reset steplegth= 0.18966 300s accpoint = TRUE OKpoint = TRUE 300s 3 1 2 20.293 last decrease= 9.9416 300s Parameter 1 is free 300s Parameter 2 is free 300s Gradsqr = 4.6712 g1, g2 -2.8546 57.162 fmin= 20.293 300s Yuan/Dai cycle reset 300s End inner loop, cycle = 0 300s 3 2 1 20.293 last decrease= NA 300s Parameter 1 is free 300s Parameter 2 is free 300s Gradsqr = 4.6712 g1, g2 4.6712 0 fmin= 20.293 300s Gradproj = -4.6712 300s reset steplegth= 0.12821 300s accpoint = TRUE OKpoint = TRUE 300s 5 3 2 19.771 last decrease= 0.5221 300s Parameter 1 is free 300s Gradsqr = 0.33284 g1, g2 -0.11477 4.2236 fmin= 19.771 300s Yuan/Dai cycle reset 300s End inner loop, cycle = 0 300s 5 4 1 19.771 last decrease= NA 300s Parameter 1 is free 300s Gradsqr = 0.33284 g1, g2 0.33284 0 fmin= 19.771 300s Gradproj = -0.33284 300s reset steplegth= 0.19231 300s accpoint = TRUE OKpoint = TRUE 300s 7 5 2 19.688 last decrease= 0.08321 300s freeing parameter 1 300s Gradsqr = 0 g1, g2 0 0.33284 fmin= 19.688 300s Very small gradient -- gradsqr = 0 300s End inner loop, cycle = 2 300s Rcgmin seems to have converged 300s Initial parameters:[1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "?" "?" "?" "?" 300s admissible = TRUE 300s Imposing mask as lower ~= upper for following parameters 300s [1] 3 300s maskadded = TRUE 300s lower:[1] 0.00 0.75 3.75 2.25 300s upper:[1] 1.25 2.50 3.75 5.00 300s parchanged = FALSE 300s At least one parameter is on a bound 300s existing parameter status:[1] "?" "?" "?" "?" 300s Post processing for method Rcgmin 300s Successful convergence! 300s kktchk: kkttol= 0.001 kkt2tol= 1e-06 control$trace= 2 300s KKT condition testing 300s Number of parameters = 4 fval = 19.688 300s Initial parameters:[1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s parchanged = FALSE 300s existing parameter status:[1] "L" "L" "M" "L" 300s Number of free parameters = 4 300s gradient:[1] 0.0 1.5 7.5 4.5 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s projected gradient:[1] 0.0 1.5 7.5 4.5 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s max abs projected gradient element = 7.5 test tol = 0.020688 300s KKT1 result = FALSE 300s Hessian eigenvalues of constrained Hessian: 300s [1] 2 2 2 2 300s KKT2 result = TRUE 300s Save results from method Rcgmin 300s $par 300s [1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s 300s $value 300s [1] 19.688 300s attr(,"fname") 300s [1] "(no_name)" 300s attr(,"method") 300s [1] "Rcgmin" 300s attr(,"ptype") 300s [1] "C" 300s 300s $counts 300s [1] 7 6 300s 300s $convergence 300s [1] 0 300s 300s $message 300s [1] NA 300s 300s $scounts 300s [1] 7 6 0 300s 300s $gevals 300s [1] 6 300s 300s $fevals 300s [1] 7 300s 300s $hevals 300s [1] 0 300s 300s $kkt1 300s [1] FALSE 300s 300s $kkt2 300s [1] TRUE 300s 300s $xtimes 300s user.self 300s 0 300s 300s Method: nvm 300s Initial parameters:[1] 0.625 1.625 3.750 3.625 300s admissible = TRUE 300s Imposing mask as lower ~= upper for following parameters 300s [1] 3 300s maskadded = TRUE 300s lower:[1] 0.00 0.75 3.75 2.25 300s upper:[1] 1.25 2.50 3.75 5.00 300s parchanged = FALSE 300s At least one parameter is on a bound 300s Parameter scaling:[1] 1 1 1 1 300s Masks present 300s nvm -- J C Nash 2009-2015 - an R implementation of Alg 21 300s lower:[1] 0.00 0.75 3.75 2.25 300s upper:[1] 1.25 2.50 3.75 5.00 300s par:[1] 0.625 1.625 3.750 3.625 300s Bounds: nolower = FALSE noupper = FALSE bounds = TRUE 300s Problem of size n= 4 300s Initial fn= 30.234 300s ig= 1 gnorm= 10.997 Reset Inv. Hessian approx at ilast = 1 300s 1 1 30.234 300s Gradproj = -64.688 300s reset steplength= 0.18966 300s Parameter 1 is free 300s Parameter 2 is free 300s ig= 2 gnorm= 2.1613 2 2 20.293 300s freeing parameter 4 300s Gradproj = -6.0239 300s reset steplength= 0 300s Unchanged in step redn 300s No acceptable point 300s Reset to gradient search 300s Reset Inv. Hessian approx at ilast = 2 300s 2 2 20.293 300s Gradproj = -4.6712 300s reset steplength= 0.12821 300s Parameter 1 is free 300s ig= 3 gnorm= 0.57692 3 3 19.771 300s freeing parameter 2 300s freeing parameter 4 300s Gradproj = -0.36074 300s reset steplength= 0.46133 300s freeing parameter 1 300s Parameter 2 is free 300s ig= 4 gnorm= 1.5306 4 4 19.711 300s freeing parameter 4 300s Gradproj = -0.23835 300s reset steplength= 0 300s Unchanged in step redn 300s No acceptable point 300s Reset to gradient search 300s Reset Inv. Hessian approx at ilast = 4 300s 4 4 19.711 300s Gradproj = -2.3429 300s reset steplength= 0.010012 300s freeing parameter 1 300s ig= 5 gnorm= 0 Small gradient norm 300s Seem to be done nvm 300s Initial parameters:[1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "?" "?" "?" "?" 300s admissible = TRUE 300s Imposing mask as lower ~= upper for following parameters 300s [1] 3 300s maskadded = TRUE 300s lower:[1] 0.00 0.75 3.75 2.25 300s upper:[1] 1.25 2.50 3.75 5.00 300s parchanged = FALSE 300s At least one parameter is on a bound 300s existing parameter status:[1] "?" "?" "?" "?" 300s Post processing for method nvm 300s kktchk: kkttol= 0.001 kkt2tol= 1e-06 control$trace= 2 300s KKT condition testing 300s Number of parameters = 4 fval = 19.688 300s Initial parameters:[1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s parchanged = FALSE 300s existing parameter status:[1] "L" "L" "M" "L" 300s Number of free parameters = 4 300s gradient:[1] 0.0 1.5 7.5 4.5 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s projected gradient:[1] 0.0 1.5 7.5 4.5 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s max abs projected gradient element = 7.5 test tol = 0.020688 300s KKT1 result = FALSE 300s Hessian eigenvalues of constrained Hessian: 300s [1] 2 2 2 2 300s KKT2 result = TRUE 300s Save results from method nvm 300s $par 300s [1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s 300s $value 300s [1] 19.688 300s attr(,"fname") 300s [1] "(no_name)" 300s attr(,"method") 300s [1] "nvm" 300s attr(,"ptype") 300s [1] "C" 300s 300s $counts 300s function gradient 300s 5 5 300s 300s $convergence 300s [1] 2 300s 300s $message 300s [1] NA 300s 300s $scounts 300s [1] 5 5 0 300s 300s $gevals 300s [1] 5 300s 300s $fevals 300s [1] 5 300s 300s $hevals 300s [1] 0 300s 300s $kkt1 300s [1] FALSE 300s 300s $kkt2 300s [1] TRUE 300s 300s $xtimes 300s user.self 300s 0.003 300s 300s Method: hjn 300s Initial parameters:[1] 0.625 1.625 3.750 3.625 300s admissible = TRUE 300s Imposing mask as lower ~= upper for following parameters 300s [1] 3 300s maskadded = TRUE 300s lower:[1] 0.00 0.75 3.75 2.25 300s upper:[1] 1.25 2.50 3.75 5.00 300s parchanged = FALSE 300s At least one parameter is on a bound 300s Parameter scaling:[1] 1 1 1 1 300s Masks present 300s hjn:control$have.bounds = TRUE 300s optimr - hjn - msk:[1] 1 1 0 1 300s hjn:bdmsk:[1] 1 1 0 1 300s Exploratory move - stepsize = 1 300s p-start:[1] 0.625 1.625 3.750 3.625 300s axial search with stepsize = 1 fn value = 21.516 after 7 maxfeval = 10000 300s PM from:[1] 0.000 0.750 3.750 2.625 300s pbest:[1] 0.000 0.750 3.750 2.625 300s PM to:[1] 0.00 0.75 3.75 2.25 300s Exploratory move - stepsize = 1 300s p-start:[1] 0.00 0.75 3.75 2.25 300s axial search with stepsize = 1 fn value = 20.688 after 10 maxfeval = 10000 300s PM from:[1] 1.00 0.75 3.75 2.25 300s pbest:[1] 1.00 0.75 3.75 2.25 300s PM to:[1] 1.25 0.75 3.75 2.25 300s Exploratory move - stepsize = 1 300s p-start:[1] 1.25 0.75 3.75 2.25 300s axial search with stepsize = 1 fn value = 19.75 after 13 maxfeval = 10000 300s PM from:[1] 0.25 0.75 3.75 2.25 300s pbest:[1] 0.25 0.75 3.75 2.25 300s PM to:[1] 0.00 0.75 3.75 2.25 300s Exploratory move - stepsize = 1 300s p-start:[1] 0.00 0.75 3.75 2.25 300s axial search with stepsize = 1 fn value = 19.75 after 16 maxfeval = 10000 300s return to base at:[1] 0.25 0.75 3.75 2.25 300s Exploratory move - stepsize = 1 300s p-start:[1] 0.25 0.75 3.75 2.25 300s axial search with stepsize = 1 fn value = 19.688 after 20 maxfeval = 10000 300s PM from:[1] 0.00 0.75 3.75 2.25 300s pbest:[1] 0.00 0.75 3.75 2.25 300s PM to:[1] 0.00 0.75 3.75 2.25 300s Exploratory move - stepsize = 1 300s p-start:[1] 0.00 0.75 3.75 2.25 300s axial search with stepsize = 1 fn value = 19.688 after 23 maxfeval = 10000 300s Reducing step to 0.2 300s Exploratory move - stepsize = 0.2 300s p-start:[1] 0.00 0.75 3.75 2.25 300s axial search with stepsize = 0.2 fn value = 19.688 after 26 maxfeval = 10000 300s Reducing step to 0.04 300s Exploratory move - stepsize = 0.04 300s p-start:[1] 0.00 0.75 3.75 2.25 300s axial search with stepsize = 0.04 fn value = 19.688 after 29 maxfeval = 10000 300s Reducing step to 0.008 300s Exploratory move - stepsize = 0.008 300s p-start:[1] 0.00 0.75 3.75 2.25 300s axial search with stepsize = 0.008 fn value = 19.688 after 32 maxfeval = 10000 300s Reducing step to 0.0016 300s Exploratory move - stepsize = 0.0016 300s p-start:[1] 0.00 0.75 3.75 2.25 300s axial search with stepsize = 0.0016 fn value = 19.688 after 35 maxfeval = 10000 300s Reducing step to 0.00032 300s Exploratory move - stepsize = 0.00032 300s p-start:[1] 0.00 0.75 3.75 2.25 300s axial search with stepsize = 0.00032 fn value = 19.688 after 38 maxfeval = 10000 300s Reducing step to 6.4e-05 300s Exploratory move - stepsize = 6.4e-05 300s p-start:[1] 0.00 0.75 3.75 2.25 300s axial search with stepsize = 6.4e-05 fn value = 19.688 after 41 maxfeval = 10000 300s Reducing step to 1.28e-05 300s Exploratory move - stepsize = 1.28e-05 300s p-start:[1] 0.00 0.75 3.75 2.25 300s axial search with stepsize = 1.28e-05 fn value = 19.688 after 44 maxfeval = 10000 300s Reducing step to 2.56e-06 300s Exploratory move - stepsize = 2.56e-06 300s p-start:[1] 0.00 0.75 3.75 2.25 300s axial search with stepsize = 2.56e-06 fn value = 19.688 after 47 maxfeval = 10000 300s Reducing step to 5.12e-07 300s Exploratory move - stepsize = 5.12e-07 300s p-start:[1] 0.00 0.75 3.75 2.25 300s axial search with stepsize = 5.12e-07 fn value = 19.688 after 50 maxfeval = 10000 300s Reducing step to 1.024e-07 300s Exploratory move - stepsize = 1.024e-07 300s p-start:[1] 0.00 0.75 3.75 2.25 300s axial search with stepsize = 1.024e-07 fn value = 19.688 after 53 maxfeval = 10000 300s Reducing step to 2.048e-08 300s pbase = pbest 300s Initial parameters:[1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "?" "?" "?" "?" 300s admissible = TRUE 300s Imposing mask as lower ~= upper for following parameters 300s [1] 3 300s maskadded = TRUE 300s lower:[1] 0.00 0.75 3.75 2.25 300s upper:[1] 1.25 2.50 3.75 5.00 300s parchanged = FALSE 300s At least one parameter is on a bound 300s existing parameter status:[1] "?" "?" "?" "?" 300s Post processing for method hjn 300s Successful convergence! 300s kktchk: kkttol= 0.001 kkt2tol= 1e-06 control$trace= 2 300s KKT condition testing 300s Number of parameters = 4 fval = 19.688 300s Initial parameters:[1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s parchanged = FALSE 300s existing parameter status:[1] "L" "L" "M" "L" 300s Number of free parameters = 4 300s gradient:[1] 0.0 1.5 7.5 4.5 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s projected gradient:[1] 0.0 1.5 7.5 4.5 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s max abs projected gradient element = 7.5 test tol = 0.020688 300s KKT1 result = FALSE 300s Hessian eigenvalues of constrained Hessian: 300s [1] 2 2 2 2 300s KKT2 result = TRUE 300s Save results from method hjn 300s $par 300s [1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s 300s $value 300s [1] 19.688 300s attr(,"fname") 300s [1] "(no_name)" 300s attr(,"method") 300s [1] "hjn" 300s attr(,"ptype") 300s [1] "C" 300s 300s $counts 300s [1] 53 NA 300s 300s $convergence 300s [1] 0 300s 300s $message 300s [1] "hjn success" 300s 300s $scounts 300s [1] 53 0 0 300s 300s $gevals 300s [1] 0 300s 300s $fevals 300s [1] 53 300s 300s $hevals 300s [1] 0 300s 300s $kkt1 300s [1] FALSE 300s 300s $kkt2 300s [1] TRUE 300s 300s $xtimes 300s user.self 300s 0 300s 300s Method: ncg 300s Initial parameters:[1] 0.625 1.625 3.750 3.625 300s admissible = TRUE 300s Imposing mask as lower ~= upper for following parameters 300s [1] 3 300s maskadded = TRUE 300s lower:[1] 0.00 0.75 3.75 2.25 300s upper:[1] 1.25 2.50 3.75 5.00 300s parchanged = FALSE 300s At least one parameter is on a bound 300s Parameter scaling:[1] 1 1 1 1 300s Masks present 300s ncg -- J C Nash 2023 - bounds constraint version of new CG 300s an R implementation of Alg 22 with Yuan/Dai modification 300s stepredn = 0.2 300s Initial function value= 30.234 300s Initial fn= 30.234 300s 1 0 1 30.234 last decrease= NA 300s Parameter 1 is free 300s Parameter 2 is free 300s Parameter 4 is free 300s Gradsqr = 64.688 g1, g2 64.688 0 fmin= 30.234 300s Gradproj = -64.688 300s reset steplegth= 0.18966 300s accpoint = TRUE OKpoint = TRUE 300s 3 1 2 20.293 last decrease= 9.9416 300s Parameter 1 is free 300s Parameter 2 is free 300s Gradsqr = 4.6712 g1, g2 -2.8546 57.162 fmin= 20.293 300s Yuan/Dai cycle reset 300s End inner loop, cycle = 0 300s 3 2 1 20.293 last decrease= NA 300s Parameter 1 is free 300s Parameter 2 is free 300s Gradsqr = 4.6712 g1, g2 4.6712 0 fmin= 20.293 300s Gradproj = -4.6712 300s reset steplegth= 0.12821 300s accpoint = TRUE OKpoint = TRUE 300s 5 3 2 19.771 last decrease= 0.5221 300s Parameter 1 is free 300s Gradsqr = 0.33284 g1, g2 -0.11477 4.2236 fmin= 19.771 300s Yuan/Dai cycle reset 300s End inner loop, cycle = 0 300s 5 4 1 19.771 last decrease= NA 300s Parameter 1 is free 300s Gradsqr = 0.33284 g1, g2 0.33284 0 fmin= 19.771 300s Gradproj = -0.33284 300s reset steplegth= 0.19231 300s accpoint = TRUE OKpoint = TRUE 300s 7 5 2 19.688 last decrease= 0.08321 300s freeing parameter 1 300s Gradsqr = 0 g1, g2 0 0.33284 fmin= 19.688 300s Very small gradient -- gradsqr = 0 300s End inner loop, cycle = 2 300s ncg seems to have converged 300s Initial parameters:[1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "?" "?" "?" "?" 300s admissible = TRUE 300s Imposing mask as lower ~= upper for following parameters 300s [1] 3 300s maskadded = TRUE 300s lower:[1] 0.00 0.75 3.75 2.25 300s upper:[1] 1.25 2.50 3.75 5.00 300s parchanged = FALSE 300s At least one parameter is on a bound 300s existing parameter status:[1] "?" "?" "?" "?" 300s Post processing for method ncg 300s Successful convergence! 300s kktchk: kkttol= 0.001 kkt2tol= 1e-06 control$trace= 2 300s KKT condition testing 300s Number of parameters = 4 fval = 19.688 300s Initial parameters:[1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s parchanged = FALSE 300s existing parameter status:[1] "L" "L" "M" "L" 300s Number of free parameters = 4 300s gradient:[1] 0.0 1.5 7.5 4.5 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s projected gradient:[1] 0.0 1.5 7.5 4.5 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s max abs projected gradient element = 7.5 test tol = 0.020688 300s KKT1 result = FALSE 300s Hessian eigenvalues of constrained Hessian: 300s [1] 2 2 2 2 300s KKT2 result = TRUE 300s Save results from method ncg 300s $par 300s [1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s 300s $value 300s [1] 19.688 300s attr(,"fname") 300s [1] "(no_name)" 300s attr(,"method") 300s [1] "ncg" 300s attr(,"ptype") 300s [1] "C" 300s 300s $counts 300s [1] 7 6 300s 300s $convergence 300s [1] 0 300s 300s $message 300s [1] NA 300s 300s $scounts 300s [1] 7 6 0 300s 300s $gevals 300s [1] 6 300s 300s $fevals 300s [1] 7 300s 300s $hevals 300s [1] 0 300s 300s $kkt1 300s [1] FALSE 300s 300s $kkt2 300s [1] TRUE 300s 300s $xtimes 300s user.self 300s 0 300s 300s Method: nlminb 300s Initial parameters:[1] 0.625 1.625 3.750 3.625 300s admissible = TRUE 300s Imposing mask as lower ~= upper for following parameters 300s [1] 3 300s maskadded = TRUE 300s lower:[1] 0.00 0.75 3.75 2.25 300s upper:[1] 1.25 2.50 3.75 5.00 300s parchanged = FALSE 300s At least one parameter is on a bound 300s Parameter scaling:[1] 1 1 1 1 300s Masks present 300s 0: 30.234375: 0.625000 1.62500 3.75000 3.62500 300s 1: 19.687500: 0.00000 0.750000 3.75000 2.25000 300s 2: 19.687500: 0.00000 0.750000 3.75000 2.25000 300s Initial parameters:[1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "?" "?" "?" "?" 300s admissible = TRUE 300s Imposing mask as lower ~= upper for following parameters 300s [1] 3 300s maskadded = TRUE 300s lower:[1] 0.00 0.75 3.75 2.25 300s upper:[1] 1.25 2.50 3.75 5.00 300s parchanged = FALSE 300s At least one parameter is on a bound 300s existing parameter status:[1] "?" "?" "?" "?" 300s Post processing for method nlminb 300s Successful convergence! 300s kktchk: kkttol= 0.001 kkt2tol= 1e-06 control$trace= 2 300s KKT condition testing 300s Number of parameters = 4 fval = 19.688 300s Initial parameters:[1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s parchanged = FALSE 300s existing parameter status:[1] "L" "L" "M" "L" 300s Number of free parameters = 4 300s gradient:[1] 0.0 1.5 7.5 4.5 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s projected gradient:[1] 0.0 1.5 7.5 4.5 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s max abs projected gradient element = 7.5 test tol = 0.020688 300s KKT1 result = FALSE 300s Hessian eigenvalues of constrained Hessian: 300s [1] 2 2 2 2 300s KKT2 result = TRUE 300s Save results from method nlminb 300s $par 300s [1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s 300s $convergence 300s [1] 0 300s 300s $message 300s [1] "both X-convergence and relative convergence (5)" 300s 300s $value 300s [1] 19.688 300s attr(,"fname") 300s [1] "(no_name)" 300s attr(,"method") 300s [1] "nlminb" 300s attr(,"ptype") 300s [1] "C" 300s 300s $counts 300s [1] 3 2 300s 300s $scounts 300s [1] 4 2 0 300s 300s $gevals 300s [1] 2 300s 300s $fevals 300s [1] 4 300s 300s $hevals 300s [1] 0 300s 300s $kkt1 300s [1] FALSE 300s 300s $kkt2 300s [1] TRUE 300s 300s $xtimes 300s user.self 300s 0.002 300s 300s Method: L-BFGS-B 300s Initial parameters:[1] 0.625 1.625 3.750 3.625 300s admissible = TRUE 300s Imposing mask as lower ~= upper for following parameters 300s [1] 3 300s maskadded = TRUE 300s lower:[1] 0.00 0.75 3.75 2.25 300s upper:[1] 1.25 2.50 3.75 5.00 300s parchanged = FALSE 300s At least one parameter is on a bound 300s Parameter scaling:[1] 1 1 1 1 300s Masks present 300s N = 4, M = 5 machine precision = 2.22045e-16 300s 300s iterations 1 300s function evaluations 2 300s segments explored during Cauchy searches 4 300s BFGS updates skipped 0 300s active bounds at final generalized Cauchy point 4 300s norm of the final projected gradient 0 300s final function value 19.6875 300s 300s final value 19.687500 300s converged 300s Initial parameters:[1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "?" "?" "?" "?" 300s admissible = TRUE 300s Imposing mask as lower ~= upper for following parameters 300s [1] 3 300s maskadded = TRUE 300s lower:[1] 0.00 0.75 3.75 2.25 300s upper:[1] 1.25 2.50 3.75 5.00 300s parchanged = FALSE 300s At least one parameter is on a bound 300s existing parameter status:[1] "?" "?" "?" "?" 300s Post processing for method L-BFGS-B 300s Successful convergence! 300s kktchk: kkttol= 0.001 kkt2tol= 1e-06 control$trace= 2 300s KKT condition testing 300s Number of parameters = 4 fval = 19.688 300s Initial parameters:[1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s parchanged = FALSE 300s existing parameter status:[1] "L" "L" "M" "L" 300s Number of free parameters = 4 300s gradient:[1] 0.0 1.5 7.5 4.5 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s Warning messages: 300s 1: In opm(xx, simfun.f, simfun.g, lower = lower, upper = upper, method = mmth, : 300s 'snewtonm' removed from 'method' -- no hess() 300s 2: In hjn(spar, efn, lower = slower, upper = supper, bdmsk = msk, control = mcontrol) : 300s hjn: lower >= upper for some parameters -- set masks 300s projected gradient:[1] 0.0 1.5 7.5 4.5 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s max abs projected gradient element = 7.5 test tol = 0.020688 300s KKT1 result = FALSE 300s Hessian eigenvalues of constrained Hessian: 300s [1] 2 2 2 2 300s KKT2 result = TRUE 300s Save results from method L-BFGS-B 300s $par 300s [1] 0.00 0.75 3.75 2.25 300s attr(,"status") 300s [1] "L" "L" "M" "L" 300s 300s $value 300s [1] 19.688 300s attr(,"fname") 300s [1] "(no_name)" 300s attr(,"method") 300s [1] "L-BFGS-B" 300s attr(,"ptype") 300s [1] "C" 300s 300s $counts 300s function gradient 300s 2 2 300s 300s $convergence 300s [1] 0 300s 300s $message 300s [1] "CONVERGENCE: NORM OF PROJECTED GRADIENT <= PGTOL" 300s 300s $scounts 300s [1] 2 2 0 300s 300s $gevals 300s [1] 2 300s 300s $fevals 300s [1] 2 300s 300s $hevals 300s [1] 0 300s 300s $kkt1 300s [1] FALSE 300s 300s $kkt2 300s [1] TRUE 300s 300s $xtimes 300s user.self 300s 0.001 300s 300s > print(summary(allmsk, order=value)) 300s p1 s1 p2 s2 p3 s3 p4 s4 value fevals gevals hevals conv kkt1 300s Rcgmin 0 L 0.75 L 3.75 M 2.25 L 19.688 7 6 0 0 FALSE 300s nvm 0 L 0.75 L 3.75 M 2.25 L 19.688 5 5 0 2 FALSE 300s hjn 0 L 0.75 L 3.75 M 2.25 L 19.688 53 0 0 0 FALSE 300s ncg 0 L 0.75 L 3.75 M 2.25 L 19.688 7 6 0 0 FALSE 300s nlminb 0 L 0.75 L 3.75 M 2.25 L 19.688 4 2 0 0 FALSE 300s L-BFGS-B 0 L 0.75 L 3.75 M 2.25 L 19.688 2 2 0 0 FALSE 300s kkt2 xtime 300s Rcgmin TRUE 0.000 300s nvm TRUE 0.003 300s hjn TRUE 0.000 300s ncg TRUE 0.000 300s nlminb TRUE 0.002 300s L-BFGS-B TRUE 0.001 300s > 300s > # Check unsuitable method trap 300s > try(optimr(xx, simfun.f, simfun.g, method="ucminf", lower=lower, upper=upper)) 300s > 300s Error in optimr(xx, simfun.f, simfun.g, method = "ucminf", lower = lower, : 300s Bounded problem with unsuitable method 300s BEGIN TEST exrosen.R 300s 300s R version 4.3.2 (2023-10-31) -- "Eye Holes" 300s Copyright (C) 2023 The R Foundation for Statistical Computing 300s Platform: x86_64-pc-linux-gnu (64-bit) 300s 300s R is free software and comes with ABSOLUTELY NO WARRANTY. 300s You are welcome to redistribute it under certain conditions. 300s Type 'license()' or 'licence()' for distribution details. 300s 300s R is a collaborative project with many contributors. 300s Type 'contributors()' for more information and 300s 'citation()' on how to cite R or R packages in publications. 300s 300s Type 'demo()' for some demos, 'help()' for on-line help, or 300s 'help.start()' for an HTML browser interface to help. 300s Type 'q()' to quit R. 300s 300s > # Extended Rosenbrock Function ex_rosen.R from 300s > # https://github.com/jlmelville/funconstrain by jlmelville 300s > # Test function 21 from the More', Garbow and Hillstrom paper. 300s > # 300s > # The objective function is the sum of \code{m} functions, each of \code{n} 300s > # parameters. 300s > # 300s > xrosn.f = function(par) { 300s + n <- length(par) 300s + if (n %% 2 != 0) { 300s + stop("Extended Rosenbrock: n must be even") 300s + } 300s + 300s + fsum <- 0 300s + for (i in 1:(n / 2)) { 300s + p2 <- 2 * i 300s + p1 <- p2 - 1 300s + 300s + f_p1 <- 10 * (par[p2] - par[p1] ^ 2) 300s + f_p2 <- 1 - par[p1] 300s + fsum <- fsum + f_p1 * f_p1 + f_p2 * f_p2 300s + } 300s + 300s + fsum 300s + } 300s > 300s > xrosn.g = function(par) { 300s + n <- length(par) 300s + if (n %% 2 != 0) { 300s + stop("Extended Rosenbrock: n must be even") 300s + } 300s + 300s + grad <- rep(0, n) 300s + for (i in 1:(n / 2)) { 300s + p2 <- 2 * i 300s + p1 <- p2 - 1 300s + xx <- par[p1] * par[p1] 300s + 300s + yx <- par[p2] - xx 300s + f_p1 <- 10 * yx 300s + f_p2 <- 1 - par[p1] 300s + 300s + grad[p1] <- grad[p1] - 400 * par[p1] * yx - 2 * f_p2 300s + grad[p2] <- grad[p2] + 200 * yx 300s + } 300s + 300s + grad 300s + } 300s > 300s > 300s BEGIN TEST maxfn.R 300s 300s R version 4.3.2 (2023-10-31) -- "Eye Holes" 300s Copyright (C) 2023 The R Foundation for Statistical Computing 300s Platform: x86_64-pc-linux-gnu (64-bit) 300s 300s R is free software and comes with ABSOLUTELY NO WARRANTY. 300s You are welcome to redistribute it under certain conditions. 300s Type 'license()' or 'licence()' for distribution details. 300s 300s R is a collaborative project with many contributors. 300s Type 'contributors()' for more information and 300s 'citation()' on how to cite R or R packages in publications. 300s 300s Type 'demo()' for some demos, 'help()' for on-line help, or 300s 'help.start()' for an HTML browser interface to help. 300s Type 'q()' to quit R. 300s 300s > # maxfn.R 300s > ## author: John C. Nash 300s > 300s > # solution: 1:n has maximum of 10. 300s > 300s > maxfn<-function(x) {# fn to be MAXIMIZED 300s + # max = 10 at 1:n 300s + n<-length(x) 300s + ss<-seq(1,n) 300s + f<-10-sum((x-ss)^2) 300s + f 300s + } 300s > 300s > maxfn.g <- function(x) { # gradient 300s + n <- length(x) 300s + ss<-seq(1,n) 300s + gg <- -2*(x-ss) 300s + gg 300s + } 300s > 300s > maxfn.h <- function(x) { # gradient 300s + n <- length(x) 300s + hh<-rep(-2, n) 300s + hh <- diag(hh) 300s + hh 300s + } 300s > 300s > # solution: 1:n has minimum of -10. 300s > 300s > negmaxfn<-function(x) {# explicit negative of maxfn 300s + f<-(-1)*maxfn(x) 300s + return(f) 300s + } 300s > negmaxfn.g<-function(x) {# explicit negative of maxfn 300s + gg<-(-1)*maxfn.g(x) 300s + gg 300s + } 300s > negmaxfn.h<-function(x) {# explicit negative of maxfn 300s + hh<-(-1)*maxfn.h(x) 300s + hh 300s + } 300s > 300s > 300s BEGIN TEST maxtest.R 300s 300s R version 4.3.2 (2023-10-31) -- "Eye Holes" 300s Copyright (C) 2023 The R Foundation for Statistical Computing 300s Platform: x86_64-pc-linux-gnu (64-bit) 300s 300s R is free software and comes with ABSOLUTELY NO WARRANTY. 300s You are welcome to redistribute it under certain conditions. 300s Type 'license()' or 'licence()' for distribution details. 300s 300s R is a collaborative project with many contributors. 300s Type 'contributors()' for more information and 300s 'citation()' on how to cite R or R packages in publications. 300s 300s Type 'demo()' for some demos, 'help()' for on-line help, or 300s 'help.start()' for an HTML browser interface to help. 300s Type 'q()' to quit R. 300s 301s > # maxtest.R 301s > ## author: John C. Nash -- revised 2023-10-21 301s > # rm(list=ls()) 301s > cat("maxfn.R -- test that maximize=TRUE works correctly\n") 301s maxfn.R -- test that maximize=TRUE works correctly 301s > 301s > ## Notes Dec 2 2021 301s > ##?? When we are using grfwd, the sign of the gradient is wrong. Why?? 301s > 301s > require(optimx) 301s Loading required package: optimx 301s > # source("optimx/tests/maxfn.R") 301s > source("maxfn.R") 301s > sessionInfo() 301s R version 4.3.2 (2023-10-31) 301s Platform: x86_64-pc-linux-gnu (64-bit) 301s Running under: Ubuntu Noble Numbat (development branch) 301s 301s Matrix products: default 301s BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.12.0 301s LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0 301s 301s locale: 301s [1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8 301s [4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8 301s [7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C 301s [10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C 301s 301s time zone: Etc/UTC 301s tzcode source: system (glibc) 301s 301s attached base packages: 301s [1] stats graphics grDevices utils datasets methods base 301s 301s other attached packages: 301s [1] optimx_2023-10.21 301s 301s loaded via a namespace (and not attached): 301s [1] compiler_4.3.2 nloptr_2.0.3 numDeriv_2016.8-1.1 301s [4] pracma_2.4.4 301s > 301s > n<-4 301s > xx<-rep(1,n) # start at all 1s 301s > rv0 <- Rvmmin(xx, maxfn, maxfn.g, control=list(maximize=TRUE, trace=2)) 301s Bounds: nolower = TRUE noupper = TRUE bounds = FALSE 301s Rvmminu -- J C Nash 2009-2015 - an R implementation of Alg 21 301s Problem of size n= 4 Dot arguments: 301s list() 301s Initial fn= 4 301s ig= 1 gnorm= 7.483315 Reset Inv. Hessian approx at ilast = 1 301s 1 1 4 301s Gradproj = -56 301s *ig= 2 gnorm= 4.489989 3 2 -4.96 301s Gradproj = -10.08 301s ig= 3 gnorm= 1.776357e-15 Small gradient norm 301s Seem to be done Rvmminu 301s > rv0 301s $par 301s [1] 1 2 3 4 301s 301s $value 301s [1] 10 301s 301s $counts 301s function gradient 301s 4 3 301s 301s $convergence 301s [1] 2 301s 301s $message 301s [1] "Rvmminu appears to have converged" 301s 301s > rv0f <- Rvmmin(xx, maxfn, "grfwd", control=list(maximize=TRUE, trace=2)) 301s Bounds: nolower = TRUE noupper = TRUE bounds = FALSE 301s WARNING: using gradient approximation ' grfwd ' 301s Rvmminu -- J C Nash 2009-2015 - an R implementation of Alg 21 301s Problem of size n= 4 Dot arguments: 301s list() 301s WARNING: using gradient approximation ' grfwd ' 301s Initial fn= 4 301s ig= 1 gnorm= 13.56465 Reset Inv. Hessian approx at ilast = 1 301s 1 1 4 301s Gradproj = -183.9999 301s *ig= 2 gnorm= 3.804792 3 2 -8.639998 301s Gradproj = -5.94588 301s ig= 3 gnorm= 2.855759 4 3 -9.157106 301s Gradproj = -2.293498 301s ig= 4 gnorm= 0.6918302 5 4 -9.923398 301s Gradproj = -0.1066547 301s ig= 5 gnorm= 0.6792094 6 5 -9.95836 301s Gradproj = -0.2224399 301s *ig= 6 gnorm= 0.5446848 8 6 -9.970856 301s Gradproj = -0.1257671 301s ig= 7 gnorm= 0.2927204 9 7 -9.979453 301s Gradproj = -0.02223421 301s ig= 8 gnorm= 0.1660062 10 8 -9.995099 301s Gradproj = -0.01704147 301s ig= 9 gnorm= 0.06793949 11 9 -9.998871 301s Gradproj = -0.001966741 301s ig= 10 gnorm= 0.01106384 12 10 -9.99998 301s Gradproj = -6.684127e-05 301s ig= 11 gnorm= 0.004497574 13 11 -9.999997 301s Gradproj = -8.012502e-06 301s ig= 12 gnorm= 0.0005488229 14 12 -10 301s Gradproj = -1.075937e-07 301s ig= 13 gnorm= 3.711149e-05 15 13 -10 301s Gradproj = -4.6129e-10 301s ig= 14 gnorm= 1.79744e-07 16 14 -10 301s Gradproj = -1.100046e-14 301s ig= 15 gnorm= 2.01168e-08 17 15 -10 301s Gradproj = -1.468632e-16 301s **********Unchanged in step redn 301s No acceptable point 301s Converged 301s Seem to be done Rvmminu 301s > rv0f 301s $par 301s [1] 0.9999995 1.9999990 2.9999985 3.9999980 301s 301s $value 301s [1] 10 301s 301s $counts 301s function gradient 301s 27 15 301s 301s $convergence 301s [1] 0 301s 301s $message 301s [1] "Rvmminu appears to have converged" 301s 301s > nrv0 <- Rvmmin(xx, negmaxfn, negmaxfn.g, control=list(trace=4)) 301s Bounds: nolower = TRUE noupper = TRUE bounds = FALSE 301s Rvmminu -- J C Nash 2009-2015 - an R implementation of Alg 21 301s Problem of size n= 4 Dot arguments: 301s list() 301s Initial fn= 4 301s [1] 1 1 1 1 301s g:[1] 0 -2 -4 -6 301s ig= 1 gnorm= 7.483315 Reset Inv. Hessian approx at ilast = 1 301s 1 1 4 301s t:[1] 0 2 4 6 301s Gradproj = -56 301s new bvec:[1] 1 3 5 7 301s changed = TRUE 301s New f= 4 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 1.0 1.4 1.8 2.2 301s changed = TRUE 301s New f= -4.96 lower = TRUE 301s accpoint = TRUE 301s ig= 2 gnorm= 4.489989 3 2 -4.96 301s t:[1] 0.0 0.6 1.2 1.8 301s Gradproj = -10.08 301s new bvec:[1] 1 2 3 4 301s changed = TRUE 301s New f= -10 lower = TRUE 301s accpoint = TRUE 301s ig= 3 gnorm= 1.776357e-15 Small gradient norm 301s Seem to be done Rvmminu 301s > nrv0 301s $par 301s [1] 1 2 3 4 301s 301s $value 301s [1] -10 301s 301s $counts 301s function gradient 301s 4 3 301s 301s $convergence 301s [1] 2 301s 301s $message 301s [1] "Rvmminu appears to have converged" 301s 301s > nrv0f <- Rvmmin(xx, negmaxfn, "grfwd", control=list(trace=4)) 301s Bounds: nolower = TRUE noupper = TRUE bounds = FALSE 301s WARNING: using gradient approximation ' grfwd ' 301s Rvmminu -- J C Nash 2009-2015 - an R implementation of Alg 21 301s Problem of size n= 4 Dot arguments: 301s list() 301s WARNING: using gradient approximation ' grfwd ' 301s Initial fn= 4 301s [1] 1 1 1 1 301s g:[1] 1.000088e-06 -1.999998e+00 -5.999997e+00 -1.200000e+01 301s ig= 1 gnorm= 13.56465 Reset Inv. Hessian approx at ilast = 1 301s 1 1 4 301s t:[1] -1.000088e-06 1.999998e+00 5.999997e+00 1.200000e+01 301s Gradproj = -183.9999 301s new bvec:[1] 0.999999 2.999998 6.999997 12.999996 301s changed = TRUE 301s New f= 87.9999 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999998 1.3999996 2.1999994 3.3999992 301s changed = TRUE 301s New f= -8.639998 lower = TRUE 301s accpoint = TRUE 301s ig= 2 gnorm= 3.804792 3 2 -8.639998 301s t:[1] -5.399320e-07 1.078797e+00 1.547086e+00 3.643931e-01 301s Gradproj = -5.94588 301s new bvec:[1] 0.9999993 2.4787967 3.7470855 3.7643923 301s changed = TRUE 301s New f= -9.157106 lower = TRUE 301s accpoint = TRUE 301s ig= 3 gnorm= 2.855759 4 3 -9.157106 301s t:[1] 2.358735e-07 -4.707672e-01 -8.495208e-01 -2.138316e-02 301s Gradproj = -2.293498 301s new bvec:[1] 0.9999995 2.0080294 2.8975647 3.7430091 301s changed = TRUE 301s New f= -9.923398 lower = TRUE 301s accpoint = TRUE 301s ig= 4 gnorm= 0.6918302 5 4 -9.923398 301s t:[1] 4.549826e-08 -8.934369e-02 -6.728596e-02 1.781076e-01 301s Gradproj = -0.1066547 301s new bvec:[1] 0.9999995 1.9186857 2.8302787 3.9211167 301s changed = TRUE 301s New f= -9.95836 lower = TRUE 301s accpoint = TRUE 301s ig= 5 gnorm= 0.6792094 6 5 -9.95836 301s t:[1] 2.367160e-08 -5.169774e-02 1.294047e-01 3.579482e-01 301s Gradproj = -0.2224399 301s new bvec:[1] 0.9999996 1.8669880 2.9596834 4.2790649 301s changed = TRUE 301s New f= -9.902805 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9083462 2.8561596 3.9927064 301s changed = TRUE 301s New f= -9.970856 lower = TRUE 301s accpoint = TRUE 301s ig= 6 gnorm= 0.5446848 8 6 -9.970856 301s t:[1] -2.989955e-08 6.616290e-02 1.671201e-01 1.464168e-01 301s Gradproj = -0.1257671 301s new bvec:[1] 0.9999995 1.9745091 3.0232798 4.1391232 301s changed = TRUE 301s New f= -9.979453 lower = TRUE 301s accpoint = TRUE 301s ig= 7 gnorm= 0.2927204 9 7 -9.979453 301s t:[1] -1.632996e-08 1.872952e-02 1.408721e-03 -7.396669e-02 301s Gradproj = -0.02223421 301s new bvec:[1] 0.9999995 1.9932386 3.0246885 4.0651565 301s changed = TRUE 301s New f= -9.995099 lower = TRUE 301s accpoint = TRUE 301s ig= 8 gnorm= 0.1660062 10 8 -9.995099 301s t:[1] 8.243860e-09 1.507766e-02 -3.175215e-02 -9.694390e-02 301s Gradproj = -0.01704147 301s new bvec:[1] 0.9999995 2.0083163 2.9929364 3.9682126 301s changed = TRUE 301s New f= -9.998871 lower = TRUE 301s accpoint = TRUE 301s ig= 9 gnorm= 0.06793949 11 9 -9.998871 301s t:[1] -1.597885e-08 -8.478648e-03 5.772073e-03 2.748432e-02 301s Gradproj = -0.001966741 301s new bvec:[1] 0.9999995 1.9998376 2.9987084 3.9956969 301s changed = TRUE 301s New f= -9.99998 lower = TRUE 301s accpoint = TRUE 301s ig= 10 gnorm= 0.01106384 12 10 -9.99998 301s t:[1] 1.750681e-08 6.126443e-04 1.781093e-03 5.763052e-03 301s Gradproj = -6.684127e-05 301s new bvec:[1] 0.9999995 2.0004503 3.0004895 4.0014600 301s changed = TRUE 301s New f= -9.999997 lower = TRUE 301s accpoint = TRUE 301s ig= 11 gnorm= 0.004497574 13 11 -9.999997 301s t:[1] -1.482301e-08 -5.272287e-04 -5.480917e-04 -1.621900e-03 301s Gradproj = -8.012502e-06 301s new bvec:[1] 0.9999995 1.9999230 2.9999414 3.9998381 301s changed = TRUE 301s New f= -10 lower = TRUE 301s accpoint = TRUE 301s ig= 12 gnorm= 0.0005488229 14 12 -10 301s t:[1] 8.988594e-09 8.119420e-05 6.090299e-05 1.706335e-04 301s Gradproj = -1.075937e-07 301s new bvec:[1] 0.9999995 2.0000042 3.0000023 4.0000087 301s changed = TRUE 301s New f= -10 lower = TRUE 301s accpoint = TRUE 301s ig= 13 gnorm= 3.711149e-05 15 13 -10 301s t:[1] -6.549467e-09 -5.259198e-06 -3.854986e-06 -1.077849e-05 301s Gradproj = -4.6129e-10 301s new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = TRUE 301s accpoint = TRUE 301s ig= 14 gnorm= 1.79744e-07 16 14 -10 301s t:[1] 5.300618e-09 3.402308e-08 1.852853e-08 4.939374e-08 301s Gradproj = -1.100046e-14 301s new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = TRUE 301s accpoint = TRUE 301s ig= 15 gnorm= 2.01168e-08 17 15 -10 301s t:[1] -4.780100e-09 -5.100037e-09 -1.396535e-09 -4.162935e-09 301s Gradproj = -1.468632e-16 301s new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = FALSE 301s Unchanged in step redn 301s No acceptable point 301s Converged 301s Seem to be done Rvmminu 301s > nrv0f 301s $par 301s [1] 0.9999995 1.9999990 2.9999985 3.9999980 301s 301s $value 301s [1] -10 301s 301s $counts 301s function gradient 301s 27 15 301s 301s $convergence 301s [1] 0 301s 301s $message 301s [1] "Rvmminu appears to have converged" 301s 301s > 301s > 301s > # Conflicting controls -- 'maximize' takes precedence over 'fnscale' 301s > ansconf0<-optimr(xx,maxfn, gr=maxfn.g, method="Rvmmin", control=list(maximize=TRUE, trace=2)) 301s Initial parameters:[1] 1 1 1 1 301s parchanged = FALSE 301s Parameter scaling:[1] 1 1 1 1 301s Bounds: nolower = TRUE noupper = TRUE bounds = FALSE 301s Rvmminu -- J C Nash 2009-2015 - an R implementation of Alg 21 301s Problem of size n= 4 Dot arguments: 301s list() 301s Initial fn= 4 301s ig= 1 gnorm= 7.483315 Reset Inv. Hessian approx at ilast = 1 301s 1 1 4 301s Gradproj = -56 301s *ig= 2 gnorm= 4.489989 3 2 -4.96 301s Gradproj = -10.08 301s ig= 3 gnorm= 1.776357e-15 Small gradient norm 301s Seem to be done Rvmminu 301s > proptimr(ansconf0) # should work OK 301s Result ansconf0 ( Rvmmin -> (no_name) ) calc. min. = 10 at 301s 1 2 3 4 301s After 4 fn evals, and 3 gr evals and 0 hessian evals 301s Termination code is 2 : Rvmminu appears to have converged 301s 301s ------------------------------------------------- 301s > 301s > ansconf0f<-optimr(xx,maxfn, gr="grfwd", method="Rvmmin", control=list(maximize=TRUE, trace=4)) 301s bdmsk:[1] 1 1 1 1 301s Bounds: nolower = TRUE noupper = TRUE bounds = FALSE 301s Initial parameters:[1] 1 1 1 1 301s parchanged = FALSE 301s Parameter scaling:[1] 1 1 1 1 301s Using numerical approximation ' grfwd ' to gradient in optimr() 301s spar = [1] 1 1 1 1 301s efn = 4 301s egr:par:[1] 1 1 1 1 301s fnscale = -1 pscale=[1] 1 1 1 1 301s gr:[1] "grfwd" 301s [1] 1.000088e-06 -1.999998e+00 -5.999997e+00 -1.200000e+01 301s ehess:[1] "is NULL" 301s Bounds: nolower = TRUE noupper = TRUE bounds = FALSE 301s Rvmminu -- J C Nash 2009-2015 - an R implementation of Alg 21 301s Problem of size n= 4 Dot arguments: 301s list() 301s Initial fn= 4 301s [1] 1 1 1 1 301s par:[1] 1 1 1 1 301s fnscale = -1 pscale=[1] 1 1 1 1 301s gr:[1] "grfwd" 301s g:[1] 1.000088e-06 -1.999998e+00 -5.999997e+00 -1.200000e+01 301s ig= 1 gnorm= 13.56465 Reset Inv. Hessian approx at ilast = 1 301s 1 1 4 301s t:[1] -1.000088e-06 1.999998e+00 5.999997e+00 1.200000e+01 301s Gradproj = -183.9999 301s new bvec:[1] 0.999999 2.999998 6.999997 12.999996 301s changed = TRUE 301s New f= 87.9999 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999998 1.3999996 2.1999994 3.3999992 301s changed = TRUE 301s New f= -8.639998 lower = TRUE 301s accpoint = TRUE 301s par:[1] 1 1 1 1 301s fnscale = -1 pscale=[1] 1 1 1 1 301s gr:[1] "grfwd" 301s ig= 2 gnorm= 3.804792 3 2 -8.639998 301s t:[1] -5.399320e-07 1.078797e+00 1.547086e+00 3.643931e-01 301s Gradproj = -5.94588 301s new bvec:[1] 0.9999993 2.4787967 3.7470855 3.7643923 301s changed = TRUE 301s New f= -9.157106 lower = TRUE 301s accpoint = TRUE 301s par:[1] 1 1 1 1 301s fnscale = -1 pscale=[1] 1 1 1 1 301s gr:[1] "grfwd" 301s ig= 3 gnorm= 2.855759 4 3 -9.157106 301s t:[1] 2.358735e-07 -4.707672e-01 -8.495208e-01 -2.138316e-02 301s Gradproj = -2.293498 301s new bvec:[1] 0.9999995 2.0080294 2.8975647 3.7430091 301s changed = TRUE 301s New f= -9.923398 lower = TRUE 301s accpoint = TRUE 301s par:[1] 1 1 1 1 301s fnscale = -1 pscale=[1] 1 1 1 1 301s gr:[1] "grfwd" 301s ig= 4 gnorm= 0.6918302 5 4 -9.923398 301s t:[1] 4.549826e-08 -8.934369e-02 -6.728596e-02 1.781076e-01 301s Gradproj = -0.1066547 301s new bvec:[1] 0.9999995 1.9186857 2.8302787 3.9211167 301s changed = TRUE 301s New f= -9.95836 lower = TRUE 301s accpoint = TRUE 301s par:[1] 1 1 1 1 301s fnscale = -1 pscale=[1] 1 1 1 1 301s gr:[1] "grfwd" 301s ig= 5 gnorm= 0.6792094 6 5 -9.95836 301s t:[1] 2.367160e-08 -5.169774e-02 1.294047e-01 3.579482e-01 301s Gradproj = -0.2224399 301s new bvec:[1] 0.9999996 1.8669880 2.9596834 4.2790649 301s changed = TRUE 301s New f= -9.902805 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9083462 2.8561596 3.9927064 301s changed = TRUE 301s New f= -9.970856 lower = TRUE 301s accpoint = TRUE 301s par:[1] 1 1 1 1 301s fnscale = -1 pscale=[1] 1 1 1 1 301s gr:[1] "grfwd" 301s ig= 6 gnorm= 0.5446848 8 6 -9.970856 301s t:[1] -2.989955e-08 6.616290e-02 1.671201e-01 1.464168e-01 301s Gradproj = -0.1257671 301s new bvec:[1] 0.9999995 1.9745091 3.0232798 4.1391232 301s changed = TRUE 301s New f= -9.979453 lower = TRUE 301s accpoint = TRUE 301s par:[1] 1 1 1 1 301s fnscale = -1 pscale=[1] 1 1 1 1 301s gr:[1] "grfwd" 301s ig= 7 gnorm= 0.2927204 9 7 -9.979453 301s t:[1] -1.632996e-08 1.872952e-02 1.408721e-03 -7.396669e-02 301s Gradproj = -0.02223421 301s new bvec:[1] 0.9999995 1.9932386 3.0246885 4.0651565 301s changed = TRUE 301s New f= -9.995099 lower = TRUE 301s accpoint = TRUE 301s par:[1] 1 1 1 1 301s fnscale = -1 pscale=[1] 1 1 1 1 301s gr:[1] "grfwd" 301s ig= 8 gnorm= 0.1660062 10 8 -9.995099 301s t:[1] 8.243860e-09 1.507766e-02 -3.175215e-02 -9.694390e-02 301s Gradproj = -0.01704147 301s new bvec:[1] 0.9999995 2.0083163 2.9929364 3.9682126 301s changed = TRUE 301s New f= -9.998871 lower = TRUE 301s accpoint = TRUE 301s par:[1] 1 1 1 1 301s fnscale = -1 pscale=[1] 1 1 1 1 301s gr:[1] "grfwd" 301s ig= 9 gnorm= 0.06793949 11 9 -9.998871 301s t:[1] -1.597885e-08 -8.478648e-03 5.772073e-03 2.748432e-02 301s Gradproj = -0.001966741 301s new bvec:[1] 0.9999995 1.9998376 2.9987084 3.9956969 301s changed = TRUE 301s New f= -9.99998 lower = TRUE 301s accpoint = TRUE 301s par:[1] 1 1 1 1 301s fnscale = -1 pscale=[1] 1 1 1 1 301s gr:[1] "grfwd" 301s ig= 10 gnorm= 0.01106384 12 10 -9.99998 301s t:[1] 1.750681e-08 6.126443e-04 1.781093e-03 5.763052e-03 301s Gradproj = -6.684127e-05 301s new bvec:[1] 0.9999995 2.0004503 3.0004895 4.0014600 301s changed = TRUE 301s New f= -9.999997 lower = TRUE 301s accpoint = TRUE 301s par:[1] 1 1 1 1 301s fnscale = -1 pscale=[1] 1 1 1 1 301s gr:[1] "grfwd" 301s ig= 11 gnorm= 0.004497574 13 11 -9.999997 301s t:[1] -1.482301e-08 -5.272287e-04 -5.480917e-04 -1.621900e-03 301s Gradproj = -8.012502e-06 301s new bvec:[1] 0.9999995 1.9999230 2.9999414 3.9998381 301s changed = TRUE 301s New f= -10 lower = TRUE 301s accpoint = TRUE 301s par:[1] 1 1 1 1 301s fnscale = -1 pscale=[1] 1 1 1 1 301s gr:[1] "grfwd" 301s ig= 12 gnorm= 0.0005488229 14 12 -10 301s t:[1] 8.988594e-09 8.119420e-05 6.090299e-05 1.706335e-04 301s Gradproj = -1.075937e-07 301s new bvec:[1] 0.9999995 2.0000042 3.0000023 4.0000087 301s changed = TRUE 301s New f= -10 lower = TRUE 301s accpoint = TRUE 301s par:[1] 1 1 1 1 301s fnscale = -1 pscale=[1] 1 1 1 1 301s gr:[1] "grfwd" 301s ig= 13 gnorm= 3.711149e-05 15 13 -10 301s t:[1] -6.549467e-09 -5.259198e-06 -3.854986e-06 -1.077849e-05 301s Gradproj = -4.6129e-10 301s new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = TRUE 301s accpoint = TRUE 301s par:[1] 1 1 1 1 301s fnscale = -1 pscale=[1] 1 1 1 1 301s gr:[1] "grfwd" 301s ig= 14 gnorm= 1.79744e-07 16 14 -10 301s t:[1] 5.300618e-09 3.402308e-08 1.852853e-08 4.939374e-08 301s Gradproj = -1.100046e-14 301s new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = TRUE 301s accpoint = TRUE 301s par:[1] 1 1 1 1 301s fnscale = -1 pscale=[1] 1 1 1 1 301s gr:[1] "grfwd" 301s ig= 15 gnorm= 2.01168e-08 17 15 -10 301s t:[1] -4.780100e-09 -5.100037e-09 -1.396535e-09 -4.162935e-09 301s Gradproj = -1.468632e-16 301s new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = TRUE 301s New f= -10 lower = FALSE 301s accpoint = FALSE 301s *new bvec:[1] 0.9999995 1.9999990 2.9999985 3.9999980 301s changed = FALSE 301s Unchanged in step redn 301s No acceptable point 301s Converged 301s Seem to be done Rvmminu 301s Rvmmin ans:$par 301s [1] 0.9999995 1.9999990 2.9999985 3.9999980 301s 301s $value 301s [1] -10 301s 301s $counts 301s function gradient 301s 27 15 301s 301s $convergence 301s [1] 0 301s 301s $message 301s [1] "Rvmminu appears to have converged" 301s 301s > proptimr(ansconf0f) # should work OK 301s Result ansconf0f ( Rvmmin -> (no_name) ) calc. min. = 10 at 301s 0.9999995 1.999999 2.999999 3.999998 301s After 27 fn evals, and 15 gr evals and 0 hessian evals 301s Termination code is 0 : Rvmminu appears to have converged 301s 301s ------------------------------------------------- 301s > ansconf0c<-optimr(xx,maxfn, gr="grcentral", method="Rvmmin", control=list(maximize=TRUE, trace=2)) 301s Initial parameters:[1] 1 1 1 1 301s parchanged = FALSE 301s Parameter scaling:[1] 1 1 1 1 301s Using numerical approximation ' grcentral ' to gradient in optimr() 301s Bounds: nolower = TRUE noupper = TRUE bounds = FALSE 301s Rvmminu -- J C Nash 2009-2015 - an R implementation of Alg 21 301s Problem of size n= 4 Dot arguments: 301s list() 301s Initial fn= 4 301s ig= 1 gnorm= 7.483315 Reset Inv. Hessian approx at ilast = 1 301s 1 1 4 301s Gradproj = -56 301s *ig= 2 gnorm= 4.489989 3 2 -4.96 301s Gradproj = -10.08 301s ig= 3 gnorm= 5.024294e-09 4 3 -10 301s Gradproj = -2.479276e-17 301s **********Unchanged in step redn 301s No acceptable point 301s Converged 301s Seem to be done Rvmminu 301s > proptimr(ansconf0c) # should work OK 301s Result ansconf0c ( Rvmmin -> (no_name) ) calc. min. = 10 at 301s 1 2 3 4 301s After 14 fn evals, and 3 gr evals and 0 hessian evals 301s Termination code is 0 : Rvmminu appears to have converged 301s 301s ------------------------------------------------- 301s > ansconf0n<-optimr(xx,maxfn, gr="grnd", method="Rvmmin", control=list(maximize=TRUE, trace=2)) 301s Initial parameters:[1] 1 1 1 1 301s parchanged = FALSE 301s Parameter scaling:[1] 1 1 1 1 301s Using numerical approximation ' grnd ' to gradient in optimr() 301s Bounds: nolower = TRUE noupper = TRUE bounds = FALSE 301s Rvmminu -- J C Nash 2009-2015 - an R implementation of Alg 21 301s Problem of size n= 4 Dot arguments: 301s list() 301s Initial fn= 4 301s ig= 1 gnorm= 7.483315 Reset Inv. Hessian approx at ilast = 1 301s 1 1 4 301s Gradproj = -56 301s *ig= 2 gnorm= 4.489989 3 2 -4.96 301s Gradproj = -10.08 301s ig= 3 gnorm= 2.179982e-10 4 3 -10 301s Gradproj = -4.701376e-20 301s ******Unchanged in step redn 301s No acceptable point 301s Converged 301s Seem to be done Rvmminu 301s > proptimr(ansconf0n) # should work OK 301s Result ansconf0n ( Rvmmin -> (no_name) ) calc. min. = 10 at 301s 1 2 3 4 301s After 10 fn evals, and 3 gr evals and 0 hessian evals 301s Termination code is 0 : Rvmminu appears to have converged 301s 301s ------------------------------------------------- 301s > ansconf1<-optimr(xx,maxfn, gr="grfwd", method="Rvmmin", control=list(maximize=TRUE, fnscale=1)) 301s > proptimr(ansconf1) # should work OK 301s Result ansconf1 ( Rvmmin -> (no_name) ) calc. min. = 10 at 301s 0.9999995 1.999999 2.999999 3.999998 301s After 27 fn evals, and 15 gr evals and 0 hessian evals 301s Termination code is 0 : Rvmminu appears to have converged 301s 301s ------------------------------------------------- 301s > # Warning 301s > ansconf2<-optimr(xx,maxfn, gr="grfwd", method="Rvmmin", control=list(maximize=FALSE, fnscale=-1)) 301s > proptimr(ansconf2) # should work OK 301s Result ansconf2 ( Rvmmin -> (no_name) ) calc. min. = 10 at 301s 0.9999995 1.999999 2.999999 3.999998 301s After 27 fn evals, and 15 gr evals and 0 hessian evals 301s Termination code is 0 : Rvmminu appears to have converged 301s 301s ------------------------------------------------- 301s > 301s > 301s > 301s Warning message: 301s In optimr(xx, maxfn, gr = "grfwd", method = "Rvmmin", control = list(maximize = FALSE, : 301s optimr: use maximize control rather than fnscale 301s BEGIN TEST run1param.R 301s 301s R version 4.3.2 (2023-10-31) -- "Eye Holes" 301s Copyright (C) 2023 The R Foundation for Statistical Computing 301s Platform: x86_64-pc-linux-gnu (64-bit) 301s 301s R is free software and comes with ABSOLUTELY NO WARRANTY. 301s You are welcome to redistribute it under certain conditions. 301s Type 'license()' or 'licence()' for distribution details. 301s 301s R is a collaborative project with many contributors. 301s Type 'contributors()' for more information and 301s 'citation()' on how to cite R or R packages in publications. 301s 301s Type 'demo()' for some demos, 'help()' for on-line help, or 301s 'help.start()' for an HTML browser interface to help. 301s Type 'q()' to quit R. 301s 301s > # run1param.R 301s > ## author: John C. Nash 301s > # rm(list=ls()) 301s > require(optimx) 301s Loading required package: optimx 301s > sessionInfo() 301s R version 4.3.2 (2023-10-31) 301s Platform: x86_64-pc-linux-gnu (64-bit) 301s Running under: Ubuntu Noble Numbat (development branch) 301s 301s Matrix products: default 301s BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.12.0 301s LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0 301s 301s locale: 301s [1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8 301s [4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8 301s [7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C 301s [10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C 301s 301s time zone: Etc/UTC 301s tzcode source: system (glibc) 301s 301s attached base packages: 301s [1] stats graphics grDevices utils datasets methods base 301s 301s other attached packages: 301s [1] optimx_2023-10.21 301s 301s loaded via a namespace (and not attached): 301s [1] compiler_4.3.2 nloptr_2.0.3 numDeriv_2016.8-1.1 301s [4] pracma_2.4.4 301s > 301s > # Note that solving 1 dimensional problems with multi-dimensional 301s > # minimizers can be unpredictable! 301s > 301s > f1<-function(xx){ # function of one parameter 301s + ((3*xx+2)*xx-5)*xx+4 ## 3*xx^3 + 2*xx^2 -5*xx + 4 301s + } 301s > 301s > g1 <- function(xx){ 301s + gg <- 9*xx*xx+4*xx -5 301s + } 301s > x0 <- .1234 301s > lb <- -1 301s > ub <- 10 301s > 301s > 301s > cat("R has optimize function for [1D] functions\n") 301s R has optimize function for [1D] functions 301s > aoptimize <- optimize(f1, c(-1, 10)) 301s > print(aoptimize) 301s $minimum 301s [1] 0.5555439 301s 301s $objective 301s [1] 2.353909 301s 301s > 301s > cat("or we can use optim() with method='Brent' \n") 301s or we can use optim() with method='Brent' 301s > abrent <- optim(x0, f1, lower=lb, upper=ub, method="Brent", control=list(trace=0)) 301s > print(abrent) 301s $par 301s [1] 0.5555556 301s 301s $value 301s [1] 2.353909 301s 301s $counts 301s function gradient 301s NA NA 301s 301s $convergence 301s [1] 0 301s 301s $message 301s NULL 301s 301s > 301s > # My own Rvmmin and Rcgmin handle 1D 301s > ansone2<-opm(x0, f1, g1, method = c("Rvmmin", "Rcgmin"), control=list(trace=0)) 301s > ansone2.sum<-summary(ansone2, order=value) 301s > print(ansone2.sum) 301s p1 s1 value fevals gevals hevals conv kkt1 kkt2 xtime 301s Rvmmin 0.5555556 2.353909 16 8 0 0 TRUE TRUE 0.009 301s Rcgmin 0.5555556 2.353909 8 6 0 0 TRUE TRUE 0.002 301s > 301s > 301s BEGIN TEST tfnchk.R 301s 301s R version 4.3.2 (2023-10-31) -- "Eye Holes" 301s Copyright (C) 2023 The R Foundation for Statistical Computing 301s Platform: x86_64-pc-linux-gnu (64-bit) 301s 301s R is free software and comes with ABSOLUTELY NO WARRANTY. 301s You are welcome to redistribute it under certain conditions. 301s Type 'license()' or 'licence()' for distribution details. 301s 301s R is a collaborative project with many contributors. 301s Type 'contributors()' for more information and 301s 'citation()' on how to cite R or R packages in publications. 301s 301s Type 'demo()' for some demos, 'help()' for on-line help, or 301s 'help.start()' for an HTML browser interface to help. 301s Type 'q()' to quit R. 301s 301s > # tfnchk.R 301s > ## author: John C. Nash 301s > # rm(list=ls()) 301s > cat("Show how fnchk works\n") 301s Show how fnchk works 301s > require(optimx) 301s Loading required package: optimx 301s > sessionInfo() 301s R version 4.3.2 (2023-10-31) 301s Platform: x86_64-pc-linux-gnu (64-bit) 301s Running under: Ubuntu Noble Numbat (development branch) 301s 301s Matrix products: default 301s BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.12.0 301s LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0 301s 301s locale: 301s [1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8 301s [4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8 301s [7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C 301s [10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C 301s 301s time zone: Etc/UTC 301s tzcode source: system (glibc) 301s 301s attached base packages: 301s [1] stats graphics grDevices utils datasets methods base 301s 301s other attached packages: 301s [1] optimx_2023-10.21 301s 301s loaded via a namespace (and not attached): 301s [1] compiler_4.3.2 nloptr_2.0.3 numDeriv_2016.8-1.1 301s [4] pracma_2.4.4 301s > 301s > # Want to illustrate each case. 301s > # Ben Bolker idea for a function that is NOT scalar 301s > 301s > benbad<-function(x, y){ 301s + # y may be provided with different structures 301s + f<-(x-y)^2 301s + } # very simple, but ... 301s > 301s > y<-1:10 301s > x<-c(1) 301s > cat("test benbad() with y=1:10, x=c(1)\n") 301s test benbad() with y=1:10, x=c(1) 301s > fc01<-fnchk(x, benbad, trace=1, y) 301s Function value at supplied parameters = [1] 0 1 4 9 16 25 36 49 64 81 301s num [1:10] 0 1 4 9 16 25 36 49 64 81 301s NULL 301s [1] TRUE 301s Function evaluation returns a vector not a scalar 301s Function evaluation returned non-numeric value 301s Function evaluation returned Inf or NA (non-computable) 301s Function at given point= NA 301s > print(fc01) 301s $fval 301s [1] NA 301s 301s $infeasible 301s [1] TRUE 301s 301s $excode 301s [1] -1 301s 301s $msg 301s [1] "Function evaluation returned Inf or NA (non-computable)" 301s 301s > 301s > y<-as.vector(y) 301s > cat("test benbad() with y=as.vector(1:10), x=c(1)\n") 301s test benbad() with y=as.vector(1:10), x=c(1) 301s > fc02<-fnchk(x, benbad, trace=1, y) 301s Function value at supplied parameters = [1] 0 1 4 9 16 25 36 49 64 81 301s num [1:10] 0 1 4 9 16 25 36 49 64 81 301s NULL 301s [1] TRUE 301s Function evaluation returns a vector not a scalar 301s Function evaluation returned non-numeric value 301s Function evaluation returned Inf or NA (non-computable) 301s Function at given point= NA 301s > print(fc02) 301s $fval 301s [1] NA 301s 301s $infeasible 301s [1] TRUE 301s 301s $excode 301s [1] -1 301s 301s $msg 301s [1] "Function evaluation returned Inf or NA (non-computable)" 301s 301s > 301s > y<-as.matrix(y) 301s > cat("test benbad() with y=as.matrix(1:10), x=c(1)\n") 301s test benbad() with y=as.matrix(1:10), x=c(1) 301s > fc03<-fnchk(x, benbad, trace=1, y) 301s Function value at supplied parameters = [,1] 301s [1,] 0 301s [2,] 1 301s [3,] 4 301s [4,] 9 301s [5,] 16 301s [6,] 25 301s [7,] 36 301s [8,] 49 301s [9,] 64 301s [10,] 81 301s num [1:10, 1] 0 1 4 9 16 25 36 49 64 81 301s NULL 301s [1] FALSE 301s Function evaluation returns a matrix list not a scalar 301s Function evaluation returned non-numeric value 301s Function evaluation returned Inf or NA (non-computable) 301s Function at given point= NA 301s > print(fc03) 301s $fval 301s [1] NA 301s 301s $infeasible 301s [1] TRUE 301s 301s $excode 301s [1] -1 301s 301s $msg 301s [1] "Function evaluation returned Inf or NA (non-computable)" 301s 301s > 301s > y<-as.array(y) 301s > cat("test benbad() with y=as.array(1:10), x=c(1)\n") 301s test benbad() with y=as.array(1:10), x=c(1) 301s > fc04<-fnchk(x, benbad, trace=1, y) 301s Function value at supplied parameters = [,1] 301s [1,] 0 301s [2,] 1 301s [3,] 4 301s [4,] 9 301s [5,] 16 301s [6,] 25 301s [7,] 36 301s [8,] 49 301s [9,] 64 301s [10,] 81 301s num [1:10, 1] 0 1 4 9 16 25 36 49 64 81 301s NULL 301s [1] FALSE 301s Function evaluation returns a matrix list not a scalar 301s Function evaluation returned non-numeric value 301s Function evaluation returned Inf or NA (non-computable) 301s Function at given point= NA 301s > print(fc04) 301s $fval 301s [1] NA 301s 301s $infeasible 301s [1] TRUE 301s 301s $excode 301s [1] -1 301s 301s $msg 301s [1] "Function evaluation returned Inf or NA (non-computable)" 301s 301s > 301s > y<-"This is a string" 301s > cat("test benbad() with y a string, x=c(1)\n") 301s test benbad() with y a string, x=c(1) 301s > fc05<-fnchk(x, benbad, trace=1, y) 301s Function value at supplied parameters =[1] NA 301s attr(,"inadmissible") 301s [1] TRUE 301s Error in x - y : non-numeric argument to binary operator 301s logi NA 301s - attr(*, "inadmissible")= logi TRUE 301s NULL 301s [1] FALSE 301s Function evaluation returns INADMISSIBLE 301s Function evaluation returned non-numeric value 301s Function evaluation returned Inf or NA (non-computable) 301s Function at given point= NA 301s > print(fc05) 301s $fval 301s [1] NA 301s 301s $infeasible 301s [1] TRUE 301s 301s $excode 301s [1] -1 301s 301s $msg 301s [1] "Function evaluation returned Inf or NA (non-computable)" 301s 301s > 301s > fr <- function(x) { ## Rosenbrock Banana function 301s + x1 <- x[1] 301s + x2 <- x[2] 301s + 100 * (x2 - x1 * x1)^2 + (1 - x1)^2 301s + } 301s > xtrad<-c(-1.2,1) 301s > ros1<-fnchk(xtrad, fr, trace=1) 301s Function value at supplied parameters =[1] 24.2 301s num 24.2 301s NULL 301s [1] TRUE 301s Function at given point= 24.2 301s > print(ros1) 301s $fval 301s [1] 24.2 301s 301s $infeasible 301s [1] FALSE 301s 301s $excode 301s [1] 0 301s 301s $msg 301s [1] "fnchk OK" 301s 301s > 301s > 301s BEGIN TEST tgrchk.R 301s 301s R version 4.3.2 (2023-10-31) -- "Eye Holes" 301s Copyright (C) 2023 The R Foundation for Statistical Computing 301s Platform: x86_64-pc-linux-gnu (64-bit) 301s 301s R is free software and comes with ABSOLUTELY NO WARRANTY. 301s You are welcome to redistribute it under certain conditions. 301s Type 'license()' or 'licence()' for distribution details. 301s 301s R is a collaborative project with many contributors. 301s Type 'contributors()' for more information and 301s 'citation()' on how to cite R or R packages in publications. 301s 301s Type 'demo()' for some demos, 'help()' for on-line help, or 301s 'help.start()' for an HTML browser interface to help. 301s Type 'q()' to quit R. 301s 301s > # tgrchk.R -- test gradient check for bad inputs or calls 301s > ## author: John C. Nash 301s > # rm(list=ls()) 301s > cat("Show how grchk works\n") 301s Show how grchk works 301s > require(optimx) 301s Loading required package: optimx 301s > 301s > jones<-function(xx){ 301s + x<-xx[1] 301s + y<-xx[2] 301s + ff<-sin(x*x/2 - y*y/4)*cos(2*x-exp(y)) 301s + ff<- -ff 301s + } 301s > 301s > jonesg <- function(xx) { 301s + x<-xx[1] 301s + y<-xx[2] 301s + gx <- cos(x * x/2 - y * y/4) * ((x + x)/2) * cos(2 * x - exp(y)) - 301s + sin(x * x/2 - y * y/4) * (sin(2 * x - exp(y)) * 2) 301s + gy <- sin(x * x/2 - y * y/4) * (sin(2 * x - exp(y)) * exp(y)) - cos(x * 301s + x/2 - y * y/4) * ((y + y)/4) * cos(2 * x - exp(y)) 301s + gg <- - c(gx, gy) 301s + } 301s > 301s > xx <- c(1, 2) 301s > 301s > gcans <- grchk(xx, jones, jonesg, trace=1, testtol=(.Machine$double.eps)^(1/3)) 302s gradient test tolerance = 6.055454e-06 fval= 0.3002153 302s compare to max(abs(gn-ga))/(1+abs(fval)) = 1.312852e-11 302s > gcans 302s [1] TRUE 302s attr(,"ga") 302s [1] -1.297122 3.311502 302s attr(,"gn") 302s [1] -1.297122 3.311502 302s attr(,"maxdiff") 302s [1] 1.70699e-11 302s > 302s > 302s > 302s BEGIN TEST tkktc.R 302s 302s R version 4.3.2 (2023-10-31) -- "Eye Holes" 302s Copyright (C) 2023 The R Foundation for Statistical Computing 302s Platform: x86_64-pc-linux-gnu (64-bit) 302s 302s R is free software and comes with ABSOLUTELY NO WARRANTY. 302s You are welcome to redistribute it under certain conditions. 302s Type 'license()' or 'licence()' for distribution details. 302s 302s R is a collaborative project with many contributors. 302s Type 'contributors()' for more information and 302s 'citation()' on how to cite R or R packages in publications. 302s 302s Type 'demo()' for some demos, 'help()' for on-line help, or 302s 'help.start()' for an HTML browser interface to help. 302s Type 'q()' to quit R. 302s 302s > # tkktc.R -- test how kkt check works 302s > ## author: John C. Nash 302s > # rm(list=ls()) 302s > cat("Show how kktc works\n") 302s Show how kktc works 302s > require(optimx) 302s Loading required package: optimx 302s > sessionInfo() 302s R version 4.3.2 (2023-10-31) 302s Platform: x86_64-pc-linux-gnu (64-bit) 302s Running under: Ubuntu Noble Numbat (development branch) 302s 302s Matrix products: default 302s BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.12.0 302s LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0 302s 302s locale: 302s [1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8 302s [4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8 302s [7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C 302s [10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C 302s 302s time zone: Etc/UTC 302s tzcode source: system (glibc) 302s 302s attached base packages: 302s [1] stats graphics grDevices utils datasets methods base 302s 302s other attached packages: 302s [1] optimx_2023-10.21 302s 302s loaded via a namespace (and not attached): 302s [1] compiler_4.3.2 nloptr_2.0.3 numDeriv_2016.8-1.1 302s [4] pracma_2.4.4 302s > 302s > jones<-function(xx){ 302s + x<-xx[1] 302s + y<-xx[2] 302s + ff<-sin(x*x/2 - y*y/4)*cos(2*x-exp(y)) 302s + ff<- -ff 302s + } 302s > 302s > jonesg <- function(xx) { 302s + x<-xx[1] 302s + y<-xx[2] 302s + gx <- cos(x * x/2 - y * y/4) * ((x + x)/2) * cos(2 * x - exp(y)) - 302s + sin(x * x/2 - y * y/4) * (sin(2 * x - exp(y)) * 2) 302s + gy <- sin(x * x/2 - y * y/4) * (sin(2 * x - exp(y)) * exp(y)) - cos(x * 302s + x/2 - y * y/4) * ((y + y)/4) * cos(2 * x - exp(y)) 302s + gg <- - c(gx, gy) 302s + } 302s > 302s > xx<-0.5*c(pi,pi) 302s > ans <- list() # set up structure 302s > 302s > 302s > # can call following if optimx present and updated 302s > ans <- optimr(xx, jones, jonesg, method="Rvmmin") 302s > ans 302s $par 302s [1] 3.154083 -3.689620 302s attr(,"status") 302s [1] " " " " 302s 302s $value 302s [1] -1 302s attr(,"fname") 302s [1] "(no_name)" 302s attr(,"method") 302s [1] "Rvmmin" 302s attr(,"ptype") 302s [1] "U" 302s 302s $counts 302s function gradient 302s 28 17 302s 302s $convergence 302s [1] 0 302s 302s $message 302s [1] "Rvmminu appears to have converged" 302s 302s $scounts 302s [1] 28 17 0 302s 302s > 302s > ans$par <- c(3.154083, -3.689620) 302s > # 20230823 may want to set dowarn 302s > kkans <- kktchk(ans$par, jones, jonesg) 302s Warning message: 302s In kktchk(ans$par, jones, jonesg) : 302s kktchk: pHes not symmetric -- symmetrizing 302s > kkans 302s $gmax 302s [1] 3.10669e-06 302s 302s $evratio 302s [1] 0.052218 302s 302s $kkt1 302s [1] TRUE 302s 302s $kkt2 302s [1] TRUE 302s 302s $hev 302s [1] 16.49106 0.86113 302s 302s $ngatend 302s [1] -3.106690e-06 -8.608104e-07 302s 302s $nhatend 302s [,1] [,2] 302s [1,] 13.948239 5.768721 302s [2,] 5.768721 3.403948 302s 302s > 302s autopkgtest [09:57:51]: test run-unit-test: -----------------------] 302s autopkgtest [09:57:51]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 302s run-unit-test PASS 303s autopkgtest [09:57:52]: test pkg-r-autopkgtest: preparing testbed 418s autopkgtest [09:59:47]: testbed dpkg architecture: amd64 418s autopkgtest [09:59:47]: testbed apt version: 2.7.12 418s autopkgtest [09:59:47]: test architecture: i386 418s autopkgtest [09:59:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 419s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 419s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4029 kB] 419s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 419s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 419s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 419s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [685 kB] 419s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [450 kB] 419s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 419s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 419s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 419s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 419s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1298 kB] 419s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4412 kB] 419s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 419s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [96.1 kB] 419s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [27.1 kB] 419s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 422s Fetched 11.7 MB in 1s (7919 kB/s) 422s Reading package lists... 424s Reading package lists... 424s Building dependency tree... 424s Reading state information... 425s Calculating upgrade... 425s The following packages will be upgraded: 425s libc-bin libc6 locales 425s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 425s Need to get 8176 kB of archives. 425s After this operation, 2048 B of additional disk space will be used. 425s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc6 amd64 2.39-0ubuntu6 [3262 kB] 425s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libc-bin amd64 2.39-0ubuntu6 [682 kB] 425s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 locales all 2.39-0ubuntu6 [4232 kB] 425s Preconfiguring packages ... 425s Fetched 8176 kB in 0s (65.4 MB/s) 426s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 436s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 437s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 437s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 437s invoke-rc.d: policy-rc.d denied execution of try-restart. 437s Reading package lists... 437s Building dependency tree... 437s Reading state information... 437s linux-generic is already the newest version (6.8.0-11.11+1). 437s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 438s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 438s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 438s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 440s Reading package lists... 440s Reading package lists... 440s Building dependency tree... 440s Reading state information... 440s Calculating upgrade... 441s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 441s Reading package lists... 441s Building dependency tree... 441s Reading state information... 441s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 441s autopkgtest [10:00:10]: rebooting testbed after setup commands that affected boot 599s Note, using file '/tmp/autopkgtest.afzAyY/3-autopkgtest-satdep.dsc' to get the build dependencies 599s Reading package lists... 599s Building dependency tree... 599s Reading state information... 600s Starting pkgProblemResolver with broken count: 0 600s Starting 2 pkgProblemResolver with broken count: 0 600s Done 600s The following NEW packages will be installed: 600s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 600s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 600s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 600s g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 600s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 600s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 600s javascript-common libasan8 libatomic1 libblas-dev libblas3 libbz2-dev 600s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1 600s libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 600s libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 600s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 600s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 600s libjs-highlight.js libjs-jquery libjs-jquery-datatables 600s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 600s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 600s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 600s liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnlopt0 600s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 600s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 600s libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 libreadline-dev 600s libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 600s libtiff6 libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 600s libxft2 libxrender1 libxss1 libxt6 linux-libc-dev littler 600s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 600s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 600s r-cran-base64enc r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 600s r-cran-cli r-cran-commonmark r-cran-crayon r-cran-desc r-cran-diffobj 600s r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap 600s r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools 600s r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later 600s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime 600s r-cran-minqa r-cran-nloptr r-cran-numderiv r-cran-optimx r-cran-pillar 600s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 600s r-cran-pracma r-cran-praise r-cran-processx r-cran-promises r-cran-ps 600s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rematch2 r-cran-rlang 600s r-cran-rmarkdown r-cran-rprojroot r-cran-sass r-cran-setrng r-cran-shiny 600s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-testthat 600s r-cran-tibble r-cran-tinytex r-cran-ucminf r-cran-utf8 r-cran-vctrs 600s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml rpcsvc-proto 600s unzip x11-common xdg-utils zip zlib1g-dev 600s 0 upgraded, 201 newly installed, 0 to remove and 0 not upgraded. 600s Need to get 213 MB of archives. 600s After this operation, 793 MB of additional disk space will be used. 600s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu6 [20.4 kB] 600s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 601s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 601s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 601s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu6 [2126 kB] 601s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 601s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 601s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 601s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 601s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 601s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 601s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 601s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 601s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 601s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 601s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 601s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 601s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 601s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 601s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 601s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 601s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 601s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 601s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 601s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 601s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 601s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 601s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 601s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 601s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 601s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 601s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 601s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 601s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 601s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 601s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 601s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 601s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 601s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 601s Get:40 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 601s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 601s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 601s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 601s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 601s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 601s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 601s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 601s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 601s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 601s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 601s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 601s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 601s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 601s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 601s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 601s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 601s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 601s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 601s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 601s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 601s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 601s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 601s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 601s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 601s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 601s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 601s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 601s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 601s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 601s Get:70 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 601s Get:71 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 601s Get:72 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 601s Get:73 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 601s Get:74 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 601s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 601s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 601s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 601s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 601s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 601s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 601s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 601s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 601s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 601s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 601s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 601s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 601s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 601s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 601s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 601s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 601s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 601s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 601s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 601s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 601s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 601s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 601s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 601s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 601s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 601s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 601s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 601s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 601s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 601s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 601s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 601s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 601s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 601s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 601s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 601s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 601s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 601s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.14-1 [779 kB] 601s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 601s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 601s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 601s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 601s Get:117 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 602s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 602s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 602s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 602s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 602s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 602s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 602s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 602s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 602s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 602s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 602s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 602s Get:129 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 602s Get:130 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 602s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 602s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 602s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 602s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 602s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 602s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 602s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 602s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 602s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 602s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 602s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 602s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 602s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 602s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 602s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 602s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 602s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 602s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 602s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 602s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 602s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 602s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 602s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 602s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 602s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 602s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 602s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 602s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 602s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 602s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 602s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 602s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 602s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 602s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 602s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 602s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 602s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 602s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 602s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 602s Get:170 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 602s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 602s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-minqa amd64 1.2.6-1 [116 kB] 602s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 libnlopt0 amd64 2.7.1-5build2 [184 kB] 602s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 602s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 602s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 602s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 602s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 602s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 602s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 602s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 602s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 602s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 602s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 602s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 602s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 602s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nloptr amd64 2.0.3-1 [381 kB] 602s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] 602s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pracma all 2.4.4-1 [1690 kB] 602s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-optimx all 2023-10.21-1 [2496 kB] 602s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 602s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 602s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 602s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 602s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 602s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 602s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 602s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 602s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 602s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-setrng all 2022.4-1-1 [55.3 kB] 602s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ucminf amd64 1.2.1-1 [34.9 kB] 603s Preconfiguring packages ... 603s Fetched 213 MB in 2s (139 MB/s) 603s Selecting previously unselected package libc-dev-bin. 603s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 603s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu6_amd64.deb ... 603s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 603s Selecting previously unselected package linux-libc-dev:amd64. 603s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 603s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 603s Selecting previously unselected package libcrypt-dev:amd64. 603s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 603s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 603s Selecting previously unselected package rpcsvc-proto. 603s Preparing to unpack .../003-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 603s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 603s Selecting previously unselected package libc6-dev:amd64. 603s Preparing to unpack .../004-libc6-dev_2.39-0ubuntu6_amd64.deb ... 603s Unpacking libc6-dev:amd64 (2.39-0ubuntu6) ... 603s Selecting previously unselected package libisl23:amd64. 603s Preparing to unpack .../005-libisl23_0.26-3_amd64.deb ... 603s Unpacking libisl23:amd64 (0.26-3) ... 603s Selecting previously unselected package libmpc3:amd64. 603s Preparing to unpack .../006-libmpc3_1.3.1-1_amd64.deb ... 603s Unpacking libmpc3:amd64 (1.3.1-1) ... 603s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 603s Preparing to unpack .../007-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 603s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 604s Selecting previously unselected package cpp-13. 604s Preparing to unpack .../008-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 604s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 604s Selecting previously unselected package cpp-x86-64-linux-gnu. 604s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 604s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 604s Selecting previously unselected package cpp. 604s Preparing to unpack .../010-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 604s Unpacking cpp (4:13.2.0-7ubuntu1) ... 604s Selecting previously unselected package libcc1-0:amd64. 604s Preparing to unpack .../011-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 604s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 604s Selecting previously unselected package libgomp1:amd64. 604s Preparing to unpack .../012-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 604s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 604s Selecting previously unselected package libitm1:amd64. 604s Preparing to unpack .../013-libitm1_14-20240303-1ubuntu1_amd64.deb ... 604s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 604s Selecting previously unselected package libatomic1:amd64. 604s Preparing to unpack .../014-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 604s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 604s Selecting previously unselected package libasan8:amd64. 604s Preparing to unpack .../015-libasan8_14-20240303-1ubuntu1_amd64.deb ... 604s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 604s Selecting previously unselected package liblsan0:amd64. 604s Preparing to unpack .../016-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 604s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 604s Selecting previously unselected package libtsan2:amd64. 604s Preparing to unpack .../017-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 604s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 604s Selecting previously unselected package libubsan1:amd64. 604s Preparing to unpack .../018-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 604s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 604s Selecting previously unselected package libhwasan0:amd64. 604s Preparing to unpack .../019-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 604s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 604s Selecting previously unselected package libquadmath0:amd64. 604s Preparing to unpack .../020-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 604s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 604s Selecting previously unselected package libgcc-13-dev:amd64. 604s Preparing to unpack .../021-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 604s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 604s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 604s Preparing to unpack .../022-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 604s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 605s Selecting previously unselected package gcc-13. 605s Preparing to unpack .../023-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 605s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 605s Selecting previously unselected package gcc-x86-64-linux-gnu. 605s Preparing to unpack .../024-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 605s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 605s Selecting previously unselected package gcc. 605s Preparing to unpack .../025-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 605s Unpacking gcc (4:13.2.0-7ubuntu1) ... 605s Selecting previously unselected package libstdc++-13-dev:amd64. 605s Preparing to unpack .../026-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 605s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 605s Selecting previously unselected package g++-13-x86-64-linux-gnu. 605s Preparing to unpack .../027-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 605s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 605s Selecting previously unselected package g++-13. 605s Preparing to unpack .../028-g++-13_13.2.0-17ubuntu2_amd64.deb ... 605s Unpacking g++-13 (13.2.0-17ubuntu2) ... 605s Selecting previously unselected package g++-x86-64-linux-gnu. 605s Preparing to unpack .../029-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 605s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 605s Selecting previously unselected package g++. 605s Preparing to unpack .../030-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 605s Unpacking g++ (4:13.2.0-7ubuntu1) ... 605s Selecting previously unselected package build-essential. 605s Preparing to unpack .../031-build-essential_12.10ubuntu1_amd64.deb ... 605s Unpacking build-essential (12.10ubuntu1) ... 605s Selecting previously unselected package dctrl-tools. 605s Preparing to unpack .../032-dctrl-tools_2.24-3build2_amd64.deb ... 605s Unpacking dctrl-tools (2.24-3build2) ... 605s Selecting previously unselected package fonts-dejavu-mono. 605s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8_all.deb ... 605s Unpacking fonts-dejavu-mono (2.37-8) ... 605s Selecting previously unselected package fonts-dejavu-core. 605s Preparing to unpack .../034-fonts-dejavu-core_2.37-8_all.deb ... 605s Unpacking fonts-dejavu-core (2.37-8) ... 605s Selecting previously unselected package fontconfig-config. 605s Preparing to unpack .../035-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 605s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 606s Selecting previously unselected package libfontconfig1:amd64. 606s Preparing to unpack .../036-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 606s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 606s Selecting previously unselected package fontconfig. 606s Preparing to unpack .../037-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 606s Unpacking fontconfig (2.15.0-1ubuntu1) ... 606s Selecting previously unselected package fonts-font-awesome. 606s Preparing to unpack .../038-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 606s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 606s Selecting previously unselected package fonts-glyphicons-halflings. 606s Preparing to unpack .../039-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 606s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 606s Selecting previously unselected package fonts-mathjax. 606s Preparing to unpack .../040-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 606s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 606s Selecting previously unselected package libgfortran5:amd64. 606s Preparing to unpack .../041-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 606s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 606s Selecting previously unselected package libgfortran-13-dev:amd64. 606s Preparing to unpack .../042-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 606s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 606s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 606s Preparing to unpack .../043-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 606s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 606s Selecting previously unselected package gfortran-13. 606s Preparing to unpack .../044-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 606s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 606s Selecting previously unselected package gfortran-x86-64-linux-gnu. 606s Preparing to unpack .../045-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 606s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 606s Selecting previously unselected package gfortran. 606s Preparing to unpack .../046-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 606s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 606s Selecting previously unselected package icu-devtools. 606s Preparing to unpack .../047-icu-devtools_74.2-1ubuntu1_amd64.deb ... 606s Unpacking icu-devtools (74.2-1ubuntu1) ... 606s Selecting previously unselected package javascript-common. 606s Preparing to unpack .../048-javascript-common_11+nmu1_all.deb ... 606s Unpacking javascript-common (11+nmu1) ... 606s Selecting previously unselected package libblas3:amd64. 606s Preparing to unpack .../049-libblas3_3.12.0-3_amd64.deb ... 606s Unpacking libblas3:amd64 (3.12.0-3) ... 606s Selecting previously unselected package libblas-dev:amd64. 606s Preparing to unpack .../050-libblas-dev_3.12.0-3_amd64.deb ... 606s Unpacking libblas-dev:amd64 (3.12.0-3) ... 606s Selecting previously unselected package libbz2-dev:amd64. 606s Preparing to unpack .../051-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 606s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 606s Selecting previously unselected package libpixman-1-0:amd64. 606s Preparing to unpack .../052-libpixman-1-0_0.42.2-1_amd64.deb ... 606s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 606s Selecting previously unselected package libxcb-render0:amd64. 606s Preparing to unpack .../053-libxcb-render0_1.15-1_amd64.deb ... 606s Unpacking libxcb-render0:amd64 (1.15-1) ... 606s Selecting previously unselected package libxcb-shm0:amd64. 606s Preparing to unpack .../054-libxcb-shm0_1.15-1_amd64.deb ... 606s Unpacking libxcb-shm0:amd64 (1.15-1) ... 607s Selecting previously unselected package libxrender1:amd64. 607s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 607s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 607s Selecting previously unselected package libcairo2:amd64. 607s Preparing to unpack .../056-libcairo2_1.18.0-1_amd64.deb ... 607s Unpacking libcairo2:amd64 (1.18.0-1) ... 607s Selecting previously unselected package libdatrie1:amd64. 607s Preparing to unpack .../057-libdatrie1_0.2.13-3_amd64.deb ... 607s Unpacking libdatrie1:amd64 (0.2.13-3) ... 607s Selecting previously unselected package libdeflate0:amd64. 607s Preparing to unpack .../058-libdeflate0_1.19-1_amd64.deb ... 607s Unpacking libdeflate0:amd64 (1.19-1) ... 607s Selecting previously unselected package libgraphite2-3:amd64. 607s Preparing to unpack .../059-libgraphite2-3_1.3.14-2_amd64.deb ... 607s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 607s Selecting previously unselected package libharfbuzz0b:amd64. 607s Preparing to unpack .../060-libharfbuzz0b_8.3.0-2_amd64.deb ... 607s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 607s Selecting previously unselected package x11-common. 607s Preparing to unpack .../061-x11-common_1%3a7.7+23ubuntu2_all.deb ... 607s Unpacking x11-common (1:7.7+23ubuntu2) ... 607s Selecting previously unselected package libice6:amd64. 607s Preparing to unpack .../062-libice6_2%3a1.0.10-1build2_amd64.deb ... 607s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 607s Selecting previously unselected package libicu-dev:amd64. 607s Preparing to unpack .../063-libicu-dev_74.2-1ubuntu1_amd64.deb ... 607s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 607s Selecting previously unselected package libjpeg-turbo8:amd64. 607s Preparing to 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zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 608s Selecting previously unselected package libpng-dev:amd64. 608s Preparing to unpack .../101-libpng-dev_1.6.43-1_amd64.deb ... 608s Unpacking libpng-dev:amd64 (1.6.43-1) ... 608s Selecting previously unselected package libreadline-dev:amd64. 608s Preparing to unpack .../102-libreadline-dev_8.2-3_amd64.deb ... 608s Unpacking libreadline-dev:amd64 (8.2-3) ... 609s Selecting previously unselected package libsharpyuv0:amd64. 609s Preparing to unpack .../103-libsharpyuv0_1.3.2-0.4_amd64.deb ... 609s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 609s Selecting previously unselected package libsm6:amd64. 609s Preparing to unpack .../104-libsm6_2%3a1.2.3-1build2_amd64.deb ... 609s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 609s Selecting previously unselected package libtcl8.6:amd64. 609s Preparing to unpack .../105-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 609s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 609s Selecting previously unselected package 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609s Unpacking r-cran-littler (0.3.19-1) ... 609s Selecting previously unselected package littler. 609s Preparing to unpack .../118-littler_0.3.19-1_all.deb ... 609s Unpacking littler (0.3.19-1) ... 609s Selecting previously unselected package node-bootstrap-sass. 609s Preparing to unpack .../119-node-bootstrap-sass_3.4.3-2_all.deb ... 609s Unpacking node-bootstrap-sass (3.4.3-2) ... 609s Selecting previously unselected package node-html5shiv. 609s Preparing to unpack .../120-node-html5shiv_3.7.3+dfsg-5_all.deb ... 609s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 609s Selecting previously unselected package node-normalize.css. 609s Preparing to unpack .../121-node-normalize.css_8.0.1-5_all.deb ... 609s Unpacking node-normalize.css (8.0.1-5) ... 609s Selecting previously unselected package pandoc-data. 609s Preparing to unpack .../122-pandoc-data_3.1.3-1_all.deb ... 609s Unpacking pandoc-data (3.1.3-1) ... 610s Selecting previously unselected package pandoc. 610s Preparing to unpack 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pkg-r-autopkgtest. 610s Preparing to unpack .../129-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 610s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 610s Selecting previously unselected package r-cran-base64enc. 611s Preparing to unpack .../130-r-cran-base64enc_0.1-3-3_amd64.deb ... 611s Unpacking r-cran-base64enc (0.1-3-3) ... 611s Selecting previously unselected package r-cran-brio. 611s Preparing to unpack .../131-r-cran-brio_1.1.4-1_amd64.deb ... 611s Unpacking r-cran-brio (1.1.4-1) ... 611s Selecting previously unselected package r-cran-rlang. 611s Preparing to unpack .../132-r-cran-rlang_1.1.3-1_amd64.deb ... 611s Unpacking r-cran-rlang (1.1.3-1) ... 611s Selecting previously unselected package r-cran-fastmap. 611s Preparing to unpack .../133-r-cran-fastmap_1.1.1-1_amd64.deb ... 611s Unpacking r-cran-fastmap (1.1.1-1) ... 611s Selecting previously unselected package r-cran-cachem. 611s Preparing to unpack .../134-r-cran-cachem_1.0.8-1_amd64.deb ... 611s Unpacking r-cran-cachem (1.0.8-1) ... 611s Selecting previously unselected package r-cran-digest. 611s Preparing to unpack .../135-r-cran-digest_0.6.34-1_amd64.deb ... 611s Unpacking r-cran-digest (0.6.34-1) ... 611s Selecting previously unselected package r-cran-ellipsis. 611s Preparing to unpack .../136-r-cran-ellipsis_0.3.2-2_amd64.deb ... 611s Unpacking r-cran-ellipsis (0.3.2-2) ... 611s Selecting previously unselected package r-cran-htmltools. 611s Preparing to unpack .../137-r-cran-htmltools_0.5.7-1_amd64.deb ... 611s Unpacking r-cran-htmltools (0.5.7-1) ... 611s Selecting previously unselected package r-cran-jquerylib. 611s Preparing to unpack .../138-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 611s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 611s Selecting previously unselected package r-cran-jsonlite. 611s Preparing to unpack .../139-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 611s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 611s Selecting previously unselected package r-cran-cli. 611s Preparing to unpack .../140-r-cran-cli_3.6.2-1_amd64.deb ... 611s Unpacking r-cran-cli (3.6.2-1) ... 611s Selecting previously unselected package r-cran-glue. 611s Preparing to unpack .../141-r-cran-glue_1.7.0-1_amd64.deb ... 611s Unpacking r-cran-glue (1.7.0-1) ... 611s Selecting previously unselected package r-cran-lifecycle. 611s Preparing to unpack .../142-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 611s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 611s Selecting previously unselected package r-cran-memoise. 611s Preparing to unpack .../143-r-cran-memoise_2.0.1-1_all.deb ... 611s Unpacking r-cran-memoise (2.0.1-1) ... 611s Selecting previously unselected package r-cran-mime. 611s Preparing to unpack .../144-r-cran-mime_0.12-1_amd64.deb ... 611s Unpacking r-cran-mime (0.12-1) ... 611s Selecting previously unselected package r-cran-fs. 611s Preparing to unpack .../145-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 611s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 611s Selecting previously unselected package r-cran-r6. 611s Preparing to unpack .../146-r-cran-r6_2.5.1-1_all.deb ... 611s Unpacking r-cran-r6 (2.5.1-1) ... 611s Selecting previously unselected package r-cran-rappdirs. 611s Preparing to unpack .../147-r-cran-rappdirs_0.3.3-1_amd64.deb ... 611s Unpacking r-cran-rappdirs (0.3.3-1) ... 611s Selecting previously unselected package r-cran-sass. 611s Preparing to unpack .../148-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 611s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 611s Selecting previously unselected package r-cran-bslib. 611s Preparing to unpack .../149-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 611s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 611s Selecting previously unselected package r-cran-ps. 611s Preparing to unpack .../150-r-cran-ps_1.7.6-1_amd64.deb ... 611s Unpacking r-cran-ps (1.7.6-1) ... 611s Selecting previously unselected package r-cran-processx. 611s Preparing to unpack .../151-r-cran-processx_3.8.3-1_amd64.deb ... 611s Unpacking r-cran-processx (3.8.3-1) ... 611s Selecting previously unselected package r-cran-callr. 611s Preparing to unpack .../152-r-cran-callr_3.7.3-2_all.deb ... 611s Unpacking r-cran-callr (3.7.3-2) ... 611s Selecting previously unselected package r-cran-commonmark. 611s Preparing to unpack .../153-r-cran-commonmark_1.9.1-1_amd64.deb ... 611s Unpacking r-cran-commonmark (1.9.1-1) ... 612s Selecting previously unselected package r-cran-crayon. 612s Preparing to unpack .../154-r-cran-crayon_1.5.2-1_all.deb ... 612s Unpacking r-cran-crayon (1.5.2-1) ... 612s Selecting previously unselected package r-cran-desc. 612s Preparing to unpack .../155-r-cran-desc_1.4.3-1_all.deb ... 612s Unpacking r-cran-desc (1.4.3-1) ... 612s Selecting previously unselected package r-cran-diffobj. 612s Preparing to unpack .../156-r-cran-diffobj_0.3.5-1_amd64.deb ... 612s Unpacking r-cran-diffobj (0.3.5-1) ... 612s Selecting previously unselected package r-cran-evaluate. 612s Preparing to unpack .../157-r-cran-evaluate_0.23-1_all.deb ... 612s Unpacking r-cran-evaluate (0.23-1) ... 612s Selecting previously unselected package r-cran-fansi. 612s Preparing to unpack .../158-r-cran-fansi_1.0.5-1_amd64.deb ... 612s Unpacking r-cran-fansi (1.0.5-1) ... 612s Selecting previously unselected package r-cran-fontawesome. 612s Preparing to unpack .../159-r-cran-fontawesome_0.5.2-1_all.deb ... 612s Unpacking r-cran-fontawesome (0.5.2-1) ... 612s Selecting previously unselected package r-cran-xfun. 612s Preparing to unpack .../160-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 612s Unpacking r-cran-xfun (0.41+dfsg-1) ... 612s Selecting previously unselected package r-cran-highr. 612s Preparing to unpack .../161-r-cran-highr_0.10+dfsg-1_all.deb ... 612s Unpacking r-cran-highr (0.10+dfsg-1) ... 612s Selecting previously unselected package r-cran-pkgkitten. 612s Preparing to unpack .../162-r-cran-pkgkitten_0.2.3-1_all.deb ... 612s Unpacking r-cran-pkgkitten (0.2.3-1) ... 612s Selecting previously unselected package r-cran-rcpp. 612s Preparing to unpack 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previously unselected package libjs-mathjax. 612s Preparing to unpack .../169-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 612s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 613s Selecting previously unselected package r-cran-knitr. 613s Preparing to unpack .../170-r-cran-knitr_1.45+dfsg-1_all.deb ... 613s Unpacking r-cran-knitr (1.45+dfsg-1) ... 613s Selecting previously unselected package r-cran-minqa. 613s Preparing to unpack .../171-r-cran-minqa_1.2.6-1_amd64.deb ... 613s Unpacking r-cran-minqa (1.2.6-1) ... 613s Selecting previously unselected package libnlopt0:amd64. 613s Preparing to unpack .../172-libnlopt0_2.7.1-5build2_amd64.deb ... 613s Unpacking libnlopt0:amd64 (2.7.1-5build2) ... 613s Selecting previously unselected package r-cran-pkgbuild. 613s Preparing to unpack .../173-r-cran-pkgbuild_1.4.3-1_all.deb ... 613s Unpacking r-cran-pkgbuild (1.4.3-1) ... 613s Selecting previously unselected package r-cran-rprojroot. 613s Preparing to unpack .../174-r-cran-rprojroot_2.0.4-1_all.deb 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libsharpyuv0:amd64 (1.3.2-0.4) ... 615s Setting up libpaper1:amd64 (1.1.29) ... 615s 615s Creating config file /etc/papersize with new version 615s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 615s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 615s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 615s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 615s Setting up libdatrie1:amd64 (0.2.13-3) ... 615s Setting up libjs-popper.js (1.16.1+ds-6) ... 615s Setting up libxcb-render0:amd64 (1.15-1) ... 615s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 615s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 615s Setting up unzip (6.0-28ubuntu3) ... 615s Setting up x11-common (1:7.7+23ubuntu2) ... 615s Setting up node-html5shiv (3.7.3+dfsg-5) ... 615s Setting up libdeflate0:amd64 (1.19-1) ... 615s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 615s Setting up libnlopt0:amd64 (2.7.1-5build2) ... 615s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 615s Setting up 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(13.2.0-17ubuntu2) ... 618s Setting up r-cran-brio (1.1.4-1) ... 618s Setting up r-cran-diffobj (0.3.5-1) ... 618s Setting up r-cran-rlang (1.1.3-1) ... 618s Setting up littler (0.3.19-1) ... 618s Setting up r-cran-pracma (2.4.4-1) ... 618s Setting up r-cran-xfun (0.41+dfsg-1) ... 618s Setting up r-cran-withr (2.5.0-1) ... 618s Setting up r-cran-processx (3.8.3-1) ... 618s Setting up r-cran-mime (0.12-1) ... 618s Setting up r-cran-praise (1.0.0-4build1) ... 618s Setting up r-cran-base64enc (0.1-3-3) ... 618s Setting up r-cran-digest (0.6.34-1) ... 618s Setting up r-cran-yaml (2.3.8-1) ... 618s Setting up r-cran-evaluate (0.23-1) ... 618s Setting up r-cran-highr (0.10+dfsg-1) ... 618s Setting up r-cran-fansi (1.0.5-1) ... 618s Setting up r-cran-setrng (2022.4-1-1) ... 618s Setting up r-cran-glue (1.7.0-1) ... 618s Setting up r-cran-xtable (1:1.8-4-2) ... 618s Setting up r-cran-cli (3.6.2-1) ... 618s Setting up gfortran (4:13.2.0-7ubuntu1) ... 618s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 618s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 618s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 618s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 618s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 618s Setting up r-cran-rprojroot (2.0.4-1) ... 618s Setting up r-cran-fastmap (1.1.1-1) ... 618s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 618s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 618s Setting up r-cran-utf8 (1.2.4-1) ... 618s Setting up r-cran-stringi (1.8.3-1) ... 618s Setting up r-cran-ucminf (1.2.1-1) ... 618s Setting up r-cran-later (1.3.2+dfsg-1) ... 618s Setting up r-cran-tinytex (0.49-1) ... 618s Setting up r-cran-knitr (1.45+dfsg-1) ... 618s Setting up g++ (4:13.2.0-7ubuntu1) ... 618s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 618s Setting up r-cran-cachem (1.0.8-1) ... 618s Setting up build-essential (12.10ubuntu1) ... 618s Setting up r-cran-vctrs (0.6.5-1) ... 618s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 618s Setting up r-cran-ellipsis (0.3.2-2) ... 618s Setting up r-cran-minqa (1.2.6-1) ... 618s Setting up r-base-dev (4.3.2-1build1) ... 618s Setting up r-cran-stringr (1.5.1-1) ... 618s Setting up r-cran-callr (3.7.3-2) ... 618s Setting up r-cran-desc (1.4.3-1) ... 618s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 618s Setting up r-cran-memoise (2.0.1-1) ... 618s Setting up r-cran-promises (1.2.1+dfsg-1) ... 618s Setting up r-cran-htmltools (0.5.7-1) ... 618s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 618s Setting up r-cran-pkgbuild (1.4.3-1) ... 618s Setting up r-cran-sass (0.4.8+dfsg-1) ... 618s Setting up r-cran-pkgload (1.3.4-1) ... 618s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 618s Setting up r-cran-rematch2 (2.1.2-2build1) ... 618s Setting up r-cran-fontawesome (0.5.2-1) ... 618s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 618s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 618s Setting up r-cran-waldo (0.5.2-1build1) ... 618s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 618s Setting up r-cran-testthat (3.2.1-1) ... 618s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 618s Setting up r-cran-nloptr (2.0.3-1) ... 618s Setting up r-cran-optimx (2023-10.21-1) ... 618s Processing triggers for libc-bin (2.39-0ubuntu6) ... 618s Processing triggers for man-db (2.12.0-3) ... 619s Processing triggers for install-info (7.1-3) ... 628s Reading package lists... 629s Building dependency tree... 629s Reading state information... 629s Starting pkgProblemResolver with broken count: 0 629s Starting 2 pkgProblemResolver with broken count: 0 629s Done 629s The following NEW packages will be installed: 629s autopkgtest-satdep 629s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 629s Need to get 0 B/700 B of archives. 629s After this operation, 0 B of additional disk space will be used. 629s Get:1 /tmp/autopkgtest.afzAyY/4-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 630s Selecting previously unselected package autopkgtest-satdep. 630s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 90850 files and directories currently installed.) 630s Preparing to unpack .../4-autopkgtest-satdep.deb ... 630s Unpacking autopkgtest-satdep (0) ... 630s Setting up autopkgtest-satdep (0) ... 631s (Reading database ... 90850 files and directories currently installed.) 631s Removing autopkgtest-satdep (0) ... 632s autopkgtest [10:03:21]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 632s autopkgtest [10:03:21]: test pkg-r-autopkgtest: [----------------------- 632s Test: Try to load the R library optimx 632s 632s R version 4.3.2 (2023-10-31) -- "Eye Holes" 632s Copyright (C) 2023 The R Foundation for Statistical Computing 632s Platform: x86_64-pc-linux-gnu (64-bit) 632s 632s R is free software and comes with ABSOLUTELY NO WARRANTY. 632s You are welcome to redistribute it under certain conditions. 632s Type 'license()' or 'licence()' for distribution details. 632s 632s R is a collaborative project with many contributors. 632s Type 'contributors()' for more information and 632s 'citation()' on how to cite R or R packages in publications. 632s 632s Type 'demo()' for some demos, 'help()' for on-line help, or 632s 'help.start()' for an HTML browser interface to help. 632s Type 'q()' to quit R. 632s 632s > library('optimx') 632s > 632s > 632s Other tests are currently unsupported! 632s They will be progressively added. 633s autopkgtest [10:03:22]: test pkg-r-autopkgtest: -----------------------] 633s autopkgtest [10:03:22]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 633s pkg-r-autopkgtest PASS 633s autopkgtest [10:03:22]: @@@@@@@@@@@@@@@@@@@@ summary 633s run-unit-test PASS 633s pkg-r-autopkgtest PASS 643s Creating nova instance adt-noble-i386-r-cran-optimx-20240323-095249-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240323.img (UUID 5df8a563-0957-4fdd-8453-862df650aaf8)... 643s Creating nova instance adt-noble-i386-r-cran-optimx-20240323-095249-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240323.img (UUID 5df8a563-0957-4fdd-8453-862df650aaf8)...