0s autopkgtest [06:57:25]: starting date and time: 2024-03-23 06:57:25+0000 0s autopkgtest [06:57:25]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [06:57:25]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4xv7edbz/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-cran-mlmrev --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-17.secgroup --name adt-noble-i386-r-cran-mlmrev-20240323-065724-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 214s autopkgtest [07:00:59]: testbed dpkg architecture: amd64 214s autopkgtest [07:00:59]: testbed apt version: 2.7.12 214s autopkgtest [07:00:59]: test architecture: i386 214s autopkgtest [07:00:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup 215s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 215s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 215s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 215s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.7 kB] 215s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3970 kB] 215s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [450 kB] 215s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [685 kB] 215s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 215s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 215s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 215s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 215s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1300 kB] 215s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4413 kB] 215s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 215s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [96.8 kB] 215s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [27.6 kB] 215s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 218s Fetched 11.7 MB in 2s (7645 kB/s) 218s Reading package lists... 220s Reading package lists... 220s Building dependency tree... 220s Reading state information... 221s Calculating upgrade... 221s The following packages will be upgraded: 221s libc-bin libc6 locales 221s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 221s Need to get 8176 kB of archives. 221s After this operation, 2048 B of additional disk space will be used. 221s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc6 amd64 2.39-0ubuntu6 [3262 kB] 221s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libc-bin amd64 2.39-0ubuntu6 [682 kB] 221s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 locales all 2.39-0ubuntu6 [4232 kB] 221s Preconfiguring packages ... 221s Fetched 8176 kB in 0s (102 MB/s) 221s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 221s Preparing to unpack .../libc6_2.39-0ubuntu6_amd64.deb ... 222s Unpacking libc6:amd64 (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 222s Setting up libc6:amd64 (2.39-0ubuntu6) ... 222s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 222s Preparing to unpack .../libc-bin_2.39-0ubuntu6_amd64.deb ... 222s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 222s Setting up libc-bin (2.39-0ubuntu6) ... 222s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 222s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ... 222s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 223s Setting up locales (2.39-0ubuntu6) ... 223s Generating locales (this might take a while)... 225s en_US.UTF-8... done 225s Generation complete. 225s Processing triggers for man-db (2.12.0-3) ... 226s Reading package lists... 226s Building dependency tree... 226s Reading state information... 227s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 227s sh: Attempting to set up Debian/Ubuntu apt sources automatically 227s sh: Distribution appears to be Ubuntu 228s Reading package lists... 228s Building dependency tree... 228s Reading state information... 229s eatmydata is already the newest version (131-1). 229s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 229s Reading package lists... 229s Building dependency tree... 229s Reading state information... 229s dbus is already the newest version (1.14.10-4ubuntu1). 229s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 229s Reading package lists... 229s Building dependency tree... 229s Reading state information... 229s rng-tools-debian is already the newest version (2.4). 229s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 229s Reading package lists... 230s Building dependency tree... 230s Reading state information... 230s The following packages will be REMOVED: 230s cloud-init* python3-configobj* python3-debconf* 230s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 230s After this operation, 3256 kB disk space will be freed. 230s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 230s Removing cloud-init (24.1.2-0ubuntu1) ... 231s Removing python3-configobj (5.0.8-3) ... 231s Removing python3-debconf (1.5.86) ... 231s Processing triggers for man-db (2.12.0-3) ... 231s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 231s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 232s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 232s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 232s invoke-rc.d: policy-rc.d denied execution of try-restart. 232s Reading package lists... 232s Building dependency tree... 232s Reading state information... 233s linux-generic is already the newest version (6.8.0-11.11+1). 233s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 233s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 233s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 233s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 235s Reading package lists... 235s Reading package lists... 235s Building dependency tree... 235s Reading state information... 235s Calculating upgrade... 235s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 235s Reading package lists... 235s Building dependency tree... 235s Reading state information... 236s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 236s autopkgtest [07:01:21]: rebooting testbed after setup commands that affected boot 393s autopkgtest [07:03:58]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 393s autopkgtest [07:03:58]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-mlmrev 394s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-mlmrev 1.0-8-2build1 (dsc) [2122 B] 394s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-mlmrev 1.0-8-2build1 (tar) [1490 kB] 394s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-mlmrev 1.0-8-2build1 (diff) [2868 B] 394s gpgv: Signature made Sat May 30 21:39:26 2020 UTC 394s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 394s gpgv: Can't check signature: No public key 394s dpkg-source: warning: cannot verify inline signature for ./r-cran-mlmrev_1.0-8-2build1.dsc: no acceptable signature found 394s autopkgtest [07:03:59]: testing package r-cran-mlmrev version 1.0-8-2build1 395s autopkgtest [07:04:00]: build not needed 396s autopkgtest [07:04:01]: test run-unit-test: preparing testbed 398s Note, using file '/tmp/autopkgtest.UJ3h2w/1-autopkgtest-satdep.dsc' to get the build dependencies 398s Reading package lists... 399s Building dependency tree... 399s Reading state information... 399s Starting pkgProblemResolver with broken count: 0 399s Starting 2 pkgProblemResolver with broken count: 0 399s Done 399s The following NEW packages will be installed: 399s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 399s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++ g++-13 399s g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 399s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu libasan8 libatomic1 libblas3 399s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1 399s libdeflate0 libfontconfig1 libgcc-13-dev libgfortran5 libgomp1 399s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libisl23 libitm1 libjbig0 399s libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 liblsan0 libmpc3 libnlopt0 399s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 399s libpaper1 libpixman-1-0 libquadmath0 libsharpyuv0 libsm6 libstdc++-13-dev 399s libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 399s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 399s linux-libc-dev littler r-base-core r-cran-boot r-cran-brio r-cran-callr 399s r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest 399s r-cran-evaluate r-cran-fansi r-cran-fs r-cran-glue r-cran-jsonlite 399s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-lme4 r-cran-magrittr 399s r-cran-mass r-cran-matrix r-cran-minqa r-cran-mlmrev r-cran-nlme 399s r-cran-nloptr r-cran-numderiv r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 399s r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps 399s r-cran-r6 r-cran-rcpp r-cran-rcppeigen r-cran-rematch2 r-cran-rlang 399s r-cran-rprojroot r-cran-statmod r-cran-testthat r-cran-tibble r-cran-utf8 399s r-cran-vctrs r-cran-waldo r-cran-withr rpcsvc-proto unzip x11-common 399s xdg-utils zip 399s 0 upgraded, 123 newly installed, 0 to remove and 0 not upgraded. 399s Need to get 136 MB of archives. 399s After this operation, 384 MB of additional disk space will be used. 399s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu6 [20.4 kB] 399s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 399s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 399s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 399s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu6 [2126 kB] 399s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 399s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 399s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 400s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 400s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 400s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 400s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 400s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 400s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 400s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 400s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 400s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 400s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 400s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 400s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 400s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 400s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 400s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 400s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 400s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 400s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 400s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 400s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 400s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 400s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 400s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 400s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 400s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 400s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 400s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 400s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 400s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 400s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 400s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 400s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 400s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 400s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 400s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 400s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 400s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 400s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 400s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 400s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 400s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 400s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 400s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 400s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 400s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 400s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 400s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 400s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 400s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 400s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 400s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 400s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 400s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 400s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 400s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 400s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 400s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 400s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 400s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 400s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 400s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 400s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.14-1 [779 kB] 400s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 400s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 400s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 400s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 400s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 400s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 400s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 400s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-boot all 1.3-30-1 [619 kB] 400s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 400s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 400s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 400s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 400s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 400s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 400s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 400s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 400s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 400s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 400s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 400s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 400s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 400s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 400s Get:93 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 400s Get:94 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 400s Get:95 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 400s Get:96 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 400s Get:97 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 400s Get:98 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 400s Get:99 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 400s Get:100 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 400s Get:101 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 400s Get:102 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-minqa amd64 1.2.6-1 [116 kB] 400s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 libnlopt0 amd64 2.7.1-5build2 [184 kB] 400s Get:104 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 400s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 400s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 400s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 400s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 400s Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 400s Get:110 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 400s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 400s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 400s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 400s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 400s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 400s Get:116 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 400s Get:117 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 400s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nloptr amd64 2.0.3-1 [381 kB] 400s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppeigen amd64 0.3.3.9.4-1 [1189 kB] 400s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 400s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lme4 amd64 1.1-35.1-4 [4138 kB] 401s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mlmrev all 1.0-8-2build1 [1806 kB] 401s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] 401s Preconfiguring packages ... 401s Fetched 136 MB in 1s (116 MB/s) 401s Selecting previously unselected package libc-dev-bin. 401s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 401s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu6_amd64.deb ... 401s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 401s Selecting previously unselected package linux-libc-dev:amd64. 401s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 401s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 401s Selecting previously unselected package libcrypt-dev:amd64. 401s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 401s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 401s Selecting previously unselected package rpcsvc-proto. 401s Preparing to unpack .../003-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 401s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 401s Selecting previously unselected package libc6-dev:amd64. 401s Preparing to unpack .../004-libc6-dev_2.39-0ubuntu6_amd64.deb ... 401s Unpacking libc6-dev:amd64 (2.39-0ubuntu6) ... 402s Selecting previously unselected package libisl23:amd64. 402s Preparing to unpack .../005-libisl23_0.26-3_amd64.deb ... 402s Unpacking libisl23:amd64 (0.26-3) ... 402s Selecting previously unselected package libmpc3:amd64. 402s Preparing to unpack .../006-libmpc3_1.3.1-1_amd64.deb ... 402s Unpacking libmpc3:amd64 (1.3.1-1) ... 402s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 402s Preparing to unpack .../007-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 402s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 402s Selecting previously unselected package cpp-13. 402s Preparing to unpack .../008-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 402s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 402s Selecting previously unselected package cpp-x86-64-linux-gnu. 402s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 402s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 402s Selecting previously unselected package cpp. 402s Preparing to unpack .../010-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 402s Unpacking cpp (4:13.2.0-7ubuntu1) ... 402s Selecting previously unselected package libcc1-0:amd64. 402s Preparing to unpack .../011-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 402s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 402s Selecting previously unselected package libgomp1:amd64. 402s Preparing to unpack .../012-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 402s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 402s Selecting previously unselected package libitm1:amd64. 402s Preparing to unpack .../013-libitm1_14-20240303-1ubuntu1_amd64.deb ... 402s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 402s Selecting previously unselected package libatomic1:amd64. 402s Preparing to unpack .../014-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 402s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 402s Selecting previously unselected package libasan8:amd64. 402s Preparing to unpack .../015-libasan8_14-20240303-1ubuntu1_amd64.deb ... 402s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 402s Selecting previously unselected package liblsan0:amd64. 402s Preparing to unpack .../016-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 402s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 402s Selecting previously unselected package libtsan2:amd64. 402s Preparing to unpack .../017-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 402s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 402s Selecting previously unselected package libubsan1:amd64. 402s Preparing to unpack .../018-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 402s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 402s Selecting previously unselected package libhwasan0:amd64. 402s Preparing to unpack .../019-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 402s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 402s Selecting previously unselected package libquadmath0:amd64. 402s Preparing to unpack .../020-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 402s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 402s Selecting previously unselected package libgcc-13-dev:amd64. 402s Preparing to unpack .../021-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 402s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 402s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 402s Preparing to unpack .../022-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 402s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 403s Selecting previously unselected package gcc-13. 403s Preparing to unpack .../023-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 403s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 403s Selecting previously unselected package gcc-x86-64-linux-gnu. 403s Preparing to unpack .../024-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 403s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 403s Selecting previously unselected package gcc. 403s Preparing to unpack .../025-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 403s Unpacking gcc (4:13.2.0-7ubuntu1) ... 403s Selecting previously unselected package libstdc++-13-dev:amd64. 403s Preparing to unpack .../026-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 403s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 403s Selecting previously unselected package g++-13-x86-64-linux-gnu. 403s Preparing to unpack .../027-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 403s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 403s Selecting previously unselected package g++-13. 403s Preparing to unpack .../028-g++-13_13.2.0-17ubuntu2_amd64.deb ... 403s Unpacking g++-13 (13.2.0-17ubuntu2) ... 403s Selecting previously unselected package g++-x86-64-linux-gnu. 403s Preparing to unpack .../029-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 403s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 403s Selecting previously unselected package g++. 403s Preparing to unpack .../030-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 403s Unpacking g++ (4:13.2.0-7ubuntu1) ... 403s Selecting previously unselected package build-essential. 403s Preparing to unpack .../031-build-essential_12.10ubuntu1_amd64.deb ... 403s Unpacking build-essential (12.10ubuntu1) ... 403s Selecting previously unselected package fonts-dejavu-mono. 403s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8_all.deb ... 403s Unpacking fonts-dejavu-mono (2.37-8) ... 403s Selecting previously unselected package fonts-dejavu-core. 403s Preparing to unpack .../033-fonts-dejavu-core_2.37-8_all.deb ... 403s Unpacking fonts-dejavu-core (2.37-8) ... 403s Selecting previously unselected package fontconfig-config. 403s Preparing to unpack .../034-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 404s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 404s Selecting previously unselected package libfontconfig1:amd64. 404s Preparing to unpack .../035-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 404s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 404s Selecting previously unselected package fontconfig. 404s Preparing to unpack .../036-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 404s Unpacking fontconfig (2.15.0-1ubuntu1) ... 404s Selecting previously unselected package libblas3:amd64. 404s Preparing to unpack .../037-libblas3_3.12.0-3_amd64.deb ... 404s Unpacking libblas3:amd64 (3.12.0-3) ... 404s Selecting previously unselected package libpixman-1-0:amd64. 404s Preparing to unpack .../038-libpixman-1-0_0.42.2-1_amd64.deb ... 404s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 404s Selecting previously unselected package libxcb-render0:amd64. 404s Preparing to unpack .../039-libxcb-render0_1.15-1_amd64.deb ... 404s Unpacking libxcb-render0:amd64 (1.15-1) ... 404s Selecting previously unselected package libxcb-shm0:amd64. 404s Preparing to unpack .../040-libxcb-shm0_1.15-1_amd64.deb ... 404s Unpacking libxcb-shm0:amd64 (1.15-1) ... 404s Selecting previously unselected package libxrender1:amd64. 404s Preparing to unpack .../041-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 404s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 404s Selecting previously unselected package libcairo2:amd64. 404s Preparing to unpack .../042-libcairo2_1.18.0-1_amd64.deb ... 404s Unpacking libcairo2:amd64 (1.18.0-1) ... 404s Selecting previously unselected package libdatrie1:amd64. 404s Preparing to unpack .../043-libdatrie1_0.2.13-3_amd64.deb ... 404s Unpacking libdatrie1:amd64 (0.2.13-3) ... 404s Selecting previously unselected package libdeflate0:amd64. 404s Preparing to unpack .../044-libdeflate0_1.19-1_amd64.deb ... 404s Unpacking libdeflate0:amd64 (1.19-1) ... 404s Selecting previously unselected package libgfortran5:amd64. 404s Preparing to unpack .../045-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 404s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 404s Selecting previously unselected package libgraphite2-3:amd64. 404s Preparing to unpack .../046-libgraphite2-3_1.3.14-2_amd64.deb ... 404s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 404s Selecting previously unselected package libharfbuzz0b:amd64. 404s Preparing to unpack .../047-libharfbuzz0b_8.3.0-2_amd64.deb ... 404s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 404s Selecting previously unselected package x11-common. 404s Preparing to unpack .../048-x11-common_1%3a7.7+23ubuntu2_all.deb ... 404s Unpacking x11-common (1:7.7+23ubuntu2) ... 404s Selecting previously unselected package libice6:amd64. 404s Preparing to unpack .../049-libice6_2%3a1.0.10-1build2_amd64.deb ... 404s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 404s Selecting previously unselected package libjpeg-turbo8:amd64. 404s Preparing to unpack .../050-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 404s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 404s Selecting previously unselected package libjpeg8:amd64. 404s Preparing to unpack .../051-libjpeg8_8c-2ubuntu11_amd64.deb ... 404s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 404s Selecting previously unselected package liblapack3:amd64. 404s Preparing to unpack .../052-liblapack3_3.12.0-3_amd64.deb ... 404s Unpacking liblapack3:amd64 (3.12.0-3) ... 404s Selecting previously unselected package liblerc4:amd64. 404s Preparing to unpack .../053-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 404s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 404s Selecting previously unselected package libthai-data. 404s Preparing to unpack .../054-libthai-data_0.1.29-2_all.deb ... 404s Unpacking libthai-data (0.1.29-2) ... 404s Selecting previously unselected package libthai0:amd64. 404s Preparing to unpack .../055-libthai0_0.1.29-2_amd64.deb ... 404s Unpacking libthai0:amd64 (0.1.29-2) ... 404s Selecting previously unselected package libpango-1.0-0:amd64. 404s Preparing to unpack .../056-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 404s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 404s Selecting previously unselected package libpangoft2-1.0-0:amd64. 404s Preparing to unpack .../057-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 404s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 404s Selecting previously unselected package libpangocairo-1.0-0:amd64. 404s Preparing to unpack .../058-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 404s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 404s Selecting previously unselected package libpaper1:amd64. 404s Preparing to unpack .../059-libpaper1_1.1.29_amd64.deb ... 404s Unpacking libpaper1:amd64 (1.1.29) ... 404s Selecting previously unselected package libpaper-utils. 404s Preparing to unpack .../060-libpaper-utils_1.1.29_amd64.deb ... 404s Unpacking libpaper-utils (1.1.29) ... 404s Selecting previously unselected package libsharpyuv0:amd64. 404s Preparing to unpack .../061-libsharpyuv0_1.3.2-0.4_amd64.deb ... 404s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 404s Selecting previously unselected package libsm6:amd64. 405s Preparing to unpack .../062-libsm6_2%3a1.2.3-1build2_amd64.deb ... 405s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 405s Selecting previously unselected package libtcl8.6:amd64. 405s Preparing to unpack .../063-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 405s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 405s Selecting previously unselected package libjbig0:amd64. 405s Preparing to unpack .../064-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 405s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 405s Selecting previously unselected package libwebp7:amd64. 405s Preparing to unpack .../065-libwebp7_1.3.2-0.4_amd64.deb ... 405s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 405s Selecting previously unselected package libtiff6:amd64. 405s Preparing to unpack .../066-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 405s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 405s Selecting previously unselected package libxft2:amd64. 405s Preparing to unpack .../067-libxft2_2.3.6-1_amd64.deb ... 405s Unpacking libxft2:amd64 (2.3.6-1) ... 405s Selecting previously unselected package libxss1:amd64. 405s Preparing to unpack .../068-libxss1_1%3a1.2.3-1build2_amd64.deb ... 405s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 405s Selecting previously unselected package libtk8.6:amd64. 405s Preparing to unpack .../069-libtk8.6_8.6.14-1_amd64.deb ... 405s Unpacking libtk8.6:amd64 (8.6.14-1) ... 405s Selecting previously unselected package libxt6:amd64. 405s Preparing to unpack .../070-libxt6_1%3a1.2.1-1.1_amd64.deb ... 405s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 405s Selecting previously unselected package zip. 405s Preparing to unpack .../071-zip_3.0-13_amd64.deb ... 405s Unpacking zip (3.0-13) ... 405s Selecting previously unselected package unzip. 405s Preparing to unpack .../072-unzip_6.0-28ubuntu3_amd64.deb ... 405s Unpacking unzip (6.0-28ubuntu3) ... 405s Selecting previously unselected package xdg-utils. 405s Preparing to unpack .../073-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 405s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 405s Selecting previously unselected package r-base-core. 405s Preparing to unpack .../074-r-base-core_4.3.2-1build1_amd64.deb ... 405s Unpacking r-base-core (4.3.2-1build1) ... 405s Selecting previously unselected package r-cran-littler. 405s Preparing to unpack .../075-r-cran-littler_0.3.19-1_amd64.deb ... 405s Unpacking r-cran-littler (0.3.19-1) ... 405s Selecting previously unselected package littler. 405s Preparing to unpack .../076-littler_0.3.19-1_all.deb ... 405s Unpacking littler (0.3.19-1) ... 405s Selecting previously unselected package r-cran-boot. 405s Preparing to unpack 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Reading package lists... 414s Building dependency tree... 414s Reading state information... 414s Starting pkgProblemResolver with broken count: 0 414s Starting 2 pkgProblemResolver with broken count: 0 414s Done 415s The following NEW packages will be installed: 415s autopkgtest-satdep 415s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 415s Need to get 0 B/700 B of archives. 415s After this operation, 0 B of additional disk space will be used. 415s Get:1 /tmp/autopkgtest.UJ3h2w/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 415s Selecting previously unselected package autopkgtest-satdep. 415s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81927 files and directories currently installed.) 415s Preparing to unpack .../2-autopkgtest-satdep.deb ... 415s Unpacking autopkgtest-satdep (0) ... 415s Setting up autopkgtest-satdep (0) ... 416s (Reading database ... 81927 files and directories currently installed.) 416s Removing autopkgtest-satdep (0) ... 417s autopkgtest [07:04:22]: test run-unit-test: [----------------------- 417s 417s R version 4.3.2 (2023-10-31) -- "Eye Holes" 417s Copyright (C) 2023 The R Foundation for Statistical Computing 417s Platform: x86_64-pc-linux-gnu (64-bit) 417s 417s R is free software and comes with ABSOLUTELY NO WARRANTY. 417s You are welcome to redistribute it under certain conditions. 417s Type 'license()' or 'licence()' for distribution details. 417s 417s R is a collaborative project with many contributors. 417s Type 'contributors()' for more information and 417s 'citation()' on how to cite R or R packages in publications. 417s 417s Type 'demo()' for some demos, 'help()' for on-line help, or 417s 'help.start()' for an HTML browser interface to help. 417s Type 'q()' to quit R. 417s 417s > library(mlmRev) 417s Loading required package: lme4 417s Loading required package: Matrix 418s > options(digits=6, useFancyQuotes = FALSE)# signif.stars for once.. 418s > fm <- glmer(immun ~ kid2p + mom25p + ord + ethn + momEd + 418s + husEd + momWork + rural + pcInd81 + (1|mom) + (1|comm), 418s + data = guImmun, family = binomial) 471s > print(fm, symbolic.cor = TRUE) 471s Generalized linear mixed model fit by maximum likelihood (Laplace 471s Approximation) [glmerMod] 471s Warning message: 471s In checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, : 471s Model failed to converge with max|grad| = 0.326795 (tol = 0.002, component 1) 471s Family: binomial ( logit ) 471s Formula: immun ~ kid2p + mom25p + ord + ethn + momEd + husEd + momWork + 471s rural + pcInd81 + (1 | mom) + (1 | comm) 471s Data: guImmun 471s AIC BIC logLik deviance df.resid 471s 2747.49 2849.69 -1355.75 2711.49 2141 471s Random effects: 471s Groups Name Std.Dev. 471s mom (Intercept) 1.15 471s comm (Intercept) 0.73 471s Number of obs: 2159, groups: mom, 1595; comm, 161 471s Fixed Effects: 471s (Intercept) kid2pY mom25pY ord23 ord46 ord7p 471s -0.879220 1.271488 -0.124117 -0.148842 0.162101 0.272012 471s ethnN ethnS momEdP momEdS husEdP husEdS 471s -0.156306 -0.053975 0.279443 0.285623 0.386052 0.350410 471s husEdU momWorkY ruralY pcInd81 471s -0.000467 0.258067 -0.676372 -0.863144 471s optimizer (Nelder_Mead) convergence code: 0 (OK) ; 0 optimizer warnings; 1 lme4 warnings 471s > 471s > fm.h <- update(fm, ~ . - husEd) 489s > print(fm.h, corr = FALSE) 489s Generalized linear mixed model fit by maximum likelihood (Laplace 489s Approximation) [glmerMod] 489s Family: binomial ( logit ) 489s Formula: immun ~ kid2p + mom25p + ord + ethn + momEd + momWork + rural + 489s pcInd81 + (1 | mom) + (1 | comm) 489s Data: guImmun 489s AIC BIC logLik deviance df.resid 489s 2748.60 2833.76 -1359.30 2718.60 2144 489s Random effects: 489s Warning message: 489s In checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, : 489s Model failed to converge with max|grad| = 0.468282 (tol = 0.002, component 1) 489s Groups Name Std.Dev. 489s mom (Intercept) 1.119 489s comm (Intercept) 0.723 489s Number of obs: 2159, groups: mom, 1595; comm, 161 489s Fixed Effects: 489s (Intercept) kid2pY mom25pY ord23 ord46 ord7p 489s -0.609 1.261 -0.147 -0.149 0.151 0.230 489s ethnN ethnS momEdP momEdS momWorkY ruralY 489s -0.247 -0.101 0.337 0.352 0.267 -0.715 489s pcInd81 489s -0.824 489s optimizer (Nelder_Mead) convergence code: 0 (OK) ; 0 optimizer warnings; 1 lme4 warnings 489s > fm.ho <- update(fm.h, ~ . - ord) 506s > ## FIXME: shows 53 outer iterations (+ probably IRLS ones) -- 506s > ## but no such info is kept stored 506s > print(fm.ho, corr = FALSE) 506s Generalized linear mixed model fit by maximum likelihood (Laplace 506s Approximation) [glmerMod] 506s Family: binomial ( logit ) 506s Formula: immun ~ kid2p + mom25p + ethn + momEd + momWork + rural + pcInd81 + 506s (1 | mom) + (1 | comm) 506s Data: guImmun 506s AIC BIC logLik deviance df.resid 506s 2746.30 2814.43 -1361.15 2722.30 2147 506s Random effects: 506s Groups Name Std.Dev. 506s mom (Intercept) 1.111 506s comm (Intercept) 0.711 506s Number of obs: 2159, groups: mom, 1595; comm, 161 506s Fixed Effects: 506s (Intercept) kid2pY mom25pY ethnN ethnS momEdP 506s -0.6808 1.2645 0.0262 -0.2113 -0.0791 0.3306 506s momEdS momWorkY ruralY pcInd81 506s 0.3229 0.2487 -0.6803 -0.8419 506s optimizer (Nelder_Mead) convergence code: 0 (OK) ; 0 optimizer warnings; 1 lme4 warnings 506s > 506s > anova(fm, fm.h, fm.ho) 506s Warning message: 506s In checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, : 506s Model failed to converge with max|grad| = 0.194023 (tol = 0.002, component 1) 506s Data: guImmun 506s Models: 506s fm.ho: immun ~ kid2p + mom25p + ethn + momEd + momWork + rural + pcInd81 + (1 | mom) + (1 | comm) 506s fm.h: immun ~ kid2p + mom25p + ord + ethn + momEd + momWork + rural + pcInd81 + (1 | mom) + (1 | comm) 506s fm: immun ~ kid2p + mom25p + ord + ethn + momEd + husEd + momWork + rural + pcInd81 + (1 | mom) + (1 | comm) 506s npar AIC BIC logLik deviance Chisq Df Pr(>Chisq) 506s fm.ho 12 2746 2814 -1361 2722 506s fm.h 15 2749 2834 -1359 2719 3.701 3 0.2956 506s fm 18 2748 2850 -1356 2712 7.106 3 0.0686 . 506s --- 506s Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 506s > 506s > (fm.hoe <- update(fm.ho, ~ . - ethn)) 515s Generalized linear mixed model fit by maximum likelihood (Laplace 515s Approximation) [glmerMod] 515s Family: binomial ( logit ) 515s Formula: immun ~ kid2p + mom25p + momEd + momWork + rural + pcInd81 + 515s (1 | mom) + (1 | comm) 515s Data: guImmun 515s AIC BIC logLik deviance df.resid 515s 2742.77 2799.54 -1361.38 2722.77 2149 515s Random effects: 515s Groups Name Std.Dev. 515s mom (Intercept) 1.093 515s comm (Intercept) 0.698 515s Number of obs: 2159, groups: mom, 1595; comm, 161 515s Fixed Effects: 515s (Intercept) kid2pY mom25pY momEdP momEdS momWorkY 515s -0.7017 1.2660 0.0252 0.3530 0.3604 0.2588 515s ruralY pcInd81 515s -0.6708 -0.9535 515s optimizer (Nelder_Mead) convergence code: 0 (OK) ; 0 optimizer warnings; 1 lme4 warnings 515s Warning message: 515s In checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, : 515s Model failed to converge with max|grad| = 0.181967 (tol = 0.002, component 1) 515s > 515s > (fm.hoem <- update(fm.hoe, ~ . - mom25p)) 523s Generalized linear mixed model fit by maximum likelihood (Laplace 523s Approximation) [glmerMod] 523s Family: binomial ( logit ) 523s Formula: immun ~ kid2p + momEd + momWork + rural + pcInd81 + (1 | mom) + 523s (1 | comm) 523s Data: guImmun 523s AIC BIC logLik deviance df.resid 523s 2740.8 2791.9 -1361.4 2722.8 2150 523s Random effects: 523s Groups Name Std.Dev. 523s mom (Intercept) 1.115 523s comm (Intercept) 0.697 523s Number of obs: 2159, groups: mom, 1595; comm, 161 523s Fixed Effects: 523s (Intercept) Warning message: 523s In checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, : 523s Model failed to converge with max|grad| = 0.109062 (tol = 0.002, component 1) 523s kid2pY momEdP momEdS momWorkY ruralY 523s -0.703 1.262 0.361 0.358 0.279 -0.672 523s pcInd81 523s -0.944 523s optimizer (Nelder_Mead) convergence code: 0 (OK) ; 0 optimizer warnings; 1 lme4 warnings 523s > 523s > (AN <- anova(fm, fm.h, fm.ho, fm.hoe, fm.hoem)) 523s Data: guImmun 523s Models: 523s fm.hoem: immun ~ kid2p + momEd + momWork + rural + pcInd81 + (1 | mom) + (1 | comm) 523s fm.hoe: immun ~ kid2p + mom25p + momEd + momWork + rural + pcInd81 + (1 | mom) + (1 | comm) 523s fm.ho: immun ~ kid2p + mom25p + ethn + momEd + momWork + rural + pcInd81 + (1 | mom) + (1 | comm) 523s fm.h: immun ~ kid2p + mom25p + ord + ethn + momEd + momWork + rural + pcInd81 + (1 | mom) + (1 | comm) 523s fm: immun ~ kid2p + mom25p + ord + ethn + momEd + husEd + momWork + rural + pcInd81 + (1 | mom) + (1 | comm) 523s npar AIC BIC logLik deviance Chisq Df Pr(>Chisq) 523s fm.hoem 9 2741 2792 -1361 2723 523s fm.hoe 10 2743 2800 -1361 2723 0.032 1 0.8587 523s fm.ho 12 2746 2814 -1361 2722 0.471 2 0.7903 523s fm.h 15 2749 2834 -1359 2719 3.701 3 0.2956 523s fm 18 2748 2850 -1356 2712 7.106 3 0.0686 . 523s --- 523s Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 523s > 523s > AN[, "logLik"] + 1362 # an inversion in the first two models 523s [1] 0.599243 0.615079 0.850419 2.701100 6.253956 523s > ## FIXME: AN doesn't have a deviance column! 523s > ## AN[, "deviance"] - 2711 # deviance scale shows this more clearly 523s > 523s > if (packageVersion("lme4") <= "1.1.21") { 523s + stopifnot(AN[,"Df"] == c(9,10,12,15,18), TRUE) 523s + } else { 523s + stopifnot(AN[,"npar"] == c(9,10,12,15,18), TRUE) 523s + } 523s > 523s > 523s > # all.equal(AN[,"logLik"] + 1362, 523s > # c(0.6072186497422, 0.6289103306312, 0.8541186984307, 523s > # 2.725550814599, 6.299084917162), tol = 1e-6), 523s > # all.equal(fixef(fm.hoem)[-1], 523s > # c("kid2pY" = 1.2662536, "momEdP"= 0.35116180, 523s > # "momEdS"= 0.3487824136, "momWorkY"=0.2672759992340, 523s > # "ruralY"=-0.678846606719, "pcInd81"=-0.9612710104134), 523s > # tol = 1e-4), 523s > 523s > 523s > cat('Time elapsed: ', proc.time(),'\n') # "stats" 523s Time elapsed: 106.582 0.192 106.784 0.004 0 523s > 524s 524s R version 4.3.2 (2023-10-31) -- "Eye Holes" 524s Copyright (C) 2023 The R Foundation for Statistical Computing 524s Platform: x86_64-pc-linux-gnu (64-bit) 524s 524s R is free software and comes with ABSOLUTELY NO WARRANTY. 524s You are welcome to redistribute it under certain conditions. 524s Type 'license()' or 'licence()' for distribution details. 524s 524s R is a collaborative project with many contributors. 524s Type 'contributors()' for more information and 524s 'citation()' on how to cite R or R packages in publications. 524s 524s Type 'demo()' for some demos, 'help()' for on-line help, or 524s 'help.start()' for an HTML browser interface to help. 524s Type 'q()' to quit R. 524s 524s > #### LMER: Put all the small data set tests into one file 524s > library(mlmRev) 524s Loading required package: lme4 524s Loading required package: Matrix 525s > options(digits=6, show.signif.stars = FALSE) 525s > old_optimizer = lmerControl(optimizer = "bobyqa") # use an older default 525s > 525s > ## bdf ---------------- Data --------------------- 525s > (fm01 <- lmer(langPOST ~ IQ.ver.cen + avg.IQ.ver.cen + (1|schoolNR), bdf, 525s + control = old_optimizer)) 525s Linear mixed model fit by REML ['lmerMod'] 525s Formula: langPOST ~ IQ.ver.cen + avg.IQ.ver.cen + (1 | schoolNR) 525s Data: bdf 525s REML criterion at convergence: 15232.2 525s Random effects: 525s Groups Name Std.Dev. 525s schoolNR (Intercept) 2.81 525s Residual 6.49 525s Number of obs: 2287, groups: schoolNR, 131 525s Fixed Effects: 525s (Intercept) IQ.ver.cen avg.IQ.ver.cen 525s 40.74 2.41 1.59 525s > (fm02 <- lmer(langPOST ~ IQ.ver.cen + avg.IQ.ver.cen +(IQ.ver.cen|schoolNR), bdf, 525s + control = old_optimizer)) 525s Linear mixed model fit by REML ['lmerMod'] 525s Formula: langPOST ~ IQ.ver.cen + avg.IQ.ver.cen + (IQ.ver.cen | schoolNR) 525s Data: bdf 525s REML criterion at convergence: 15217.9 525s Random effects: 525s Groups Name Std.Dev. Corr 525s schoolNR (Intercept) 2.842 525s IQ.ver.cen 0.456 -0.64 525s Residual 6.430 525s Number of obs: 2287, groups: schoolNR, 131 525s Fixed Effects: 525s (Intercept) IQ.ver.cen avg.IQ.ver.cen 525s 40.75 2.46 1.41 525s > ## 525s > anova(fm01, fm02) 525s refitting model(s) with ML (instead of REML) 525s Data: bdf 525s Models: 525s fm01: langPOST ~ IQ.ver.cen + avg.IQ.ver.cen + (1 | schoolNR) 525s fm02: langPOST ~ IQ.ver.cen + avg.IQ.ver.cen + (IQ.ver.cen | schoolNR) 525s npar AIC BIC logLik deviance Chisq Df Pr(>Chisq) 525s fm01 5 15238 15266 -7614 15228 525s fm02 7 15228 15268 -7607 15214 14.01 2 0.000905 525s > cat('Time elapsed: ', (.pt <- proc.time()),'\n') # "stats" 525s Time elapsed: 1.393 0.155 1.547 0.004 0 525s > 525s > ## egsingle ----------- Data --------------------- 525s > (fm1 <- lmer(math ~ year + (1|childid) + (1|schoolid), egsingle, 525s + control = old_optimizer)) 525s Linear mixed model fit by REML ['lmerMod'] 525s Formula: math ~ year + (1 | childid) + (1 | schoolid) 525s Data: egsingle 525s REML criterion at convergence: 16759.4 525s Random effects: 525s Groups Name Std.Dev. 525s childid (Intercept) 0.818 525s schoolid (Intercept) 0.432 525s Residual 0.589 525s Number of obs: 7230, groups: childid, 1721; schoolid, 60 525s Fixed Effects: 525s (Intercept) year 525s -0.780 0.746 525s > (fm2 <- lmer(math ~ year + (1|childid) + (year|schoolid), egsingle, 525s + control = old_optimizer)) 526s Linear mixed model fit by REML ['lmerMod'] 526s Formula: math ~ year + (1 | childid) + (year | schoolid) 526s Data: egsingle 526s REML criterion at convergence: 16482.4 526s Random effects: 526s Groups Name Std.Dev. Corr 526s childid (Intercept) 0.820 526s schoolid (Intercept) 0.408 526s year 0.108 0.44 526s Residual 0.570 526s Number of obs: 7230, groups: childid, 1721; schoolid, 60 526s Fixed Effects: 526s (Intercept) year 526s -0.777 0.763 526s > (fm3 <- lmer(math ~ year + (year|childid) + (1|schoolid), egsingle, 526s + control = old_optimizer)) 526s Linear mixed model fit by REML ['lmerMod'] 526s Formula: math ~ year + (year | childid) + (1 | schoolid) 526s Data: egsingle 526s REML criterion at convergence: 16517.5 526s Random effects: 526s Groups Name Std.Dev. Corr 526s childid (Intercept) 0.805 526s year 0.147 0.46 526s schoolid (Intercept) 0.392 526s Residual 0.549 526s Number of obs: 7230, groups: childid, 1721; schoolid, 60 526s Fixed Effects: 526s (Intercept) year 526s -0.793 0.747 526s > (fm4 <- lmer(math ~ year + (year|childid) + (year|schoolid), egsingle, 526s + control = old_optimizer)) 528s Linear mixed model fit by REML ['lmerMod'] 528s Formula:refitting model(s) with ML (instead of REML) 528s math ~ year + (year | childid) + (year | schoolid) 528s Data: egsingle 528s REML criterion at convergence: 16336.7 528s Random effects: 528s Groups Name Std.Dev. Corr 528s childid (Intercept) 0.800 528s year 0.106 0.55 528s schoolid (Intercept) 0.411 528s year 0.106 0.40 528s Residual 0.549 528s Number of obs: 7230, groups: childid, 1721; schoolid, 60 528s Fixed Effects: 528s (Intercept) year 528s -0.779 0.763 528s > ## 528s > anova(fm1, fm2, fm3, fm4) 529s Data: egsingle 529s Models: 529s fm1: math ~ year + (1 | childid) + (1 | schoolid) 529s fm2: math ~ year + (1 | childid) + (year | schoolid) 529s fm3: math ~ year + (year | childid) + (1 | schoolid) 529s fm4: math ~ year + (year | childid) + (year | schoolid) 529s npar AIC BIC logLik deviance Chisq Df Pr(>Chisq) 529s fm1 5 16757 16791 -8374 16747 529s fm2 7 16486 16534 -8236 16472 275.2 2 <2e-16 529s fm3 7 16519 16567 -8253 16505 0.0 0 529s fm4 9 16344 16406 -8163 16326 179.1 2 <2e-16 529s > cat('Time elapsed: ', {.ot <- .pt; (.pt <- proc.time()) - .ot},'\n') # "stats" 529s Time elapsed: 4.302 0.02 4.324 0 0 529s > 529s > ## Early -------------- Data --------------------- 529s > Early$tos <- Early$age - 0.5 529s > (fm1E <- lmer(cog ~ tos * trt + (tos|id), Early, 529s + control = old_optimizer)) 529s boundary (singular) fit: see help('isSingular') 529s Linear mixed model fit by REML ['lmerMod'] 529s Formula: cog ~ tos * trt + (tos | id) 529s Data: Early 529s REML criterion at convergence: 2358.74 529s Random effects: 529s Groups Name Std.Dev. Corr 529s id (Intercept) 12.87 529s tos 3.21 -1.00 529s Residual 8.69 529s Number of obs: 309, groups: id, 103 529s Fixed Effects: 529s (Intercept) tos trtY tos:trtY 529s 118.41 -21.13 4.22 5.27 529s optimizer (bobyqa) convergence code: 0 (OK) ; 0 optimizer warnings; 1 lme4 warnings 529s > 529s > ## Exam --------------- Data --------------------- 529s > (fm05 <- lmer(normexam ~ standLRT + sex + schgend + (1|school), Exam, 529s + control = old_optimizer)) 529s Linear mixed model fit by REML ['lmerMod'] 529s Formula: normexam ~ standLRT + sex + schgend + (1 | school) 529s Data: Exam 529s REML criterion at convergence: 9347.67 529s Random effects: 529s Groups Name Std.Dev. 529s school (Intercept) 0.293 529s Residual 0.750 529s Number of obs: 4059, groups: school, 65 529s Fixed Effects: 529s (Intercept) standLRT sexM schgendboys schgendgirls 529s -0.00105 0.55975 -0.16739 0.17769 0.15900 529s > 529s > ## Chem97 ------------- Data --------------------- 529s > (fm06 <- lmer(score ~ gcsecnt + (1|school) + (1|lea), Chem97, 529s + control = old_optimizer)) 530s Linear mixed model fit by REML ['lmerMod'] 530s Formula: score ~ gcsecnt + (1 | school) + (1 | lea) 530s Data: Chem97 530s REML criterion at convergence: 141697 530s Random effects: 530s Groups Name Std.Dev. 530s school (Intercept) 1.080 530s lea (Intercept) 0.122 530s Residual 2.270 530s Number of obs: 31022, groups: school, 2410; lea, 131 530s Fixed Effects: 530s (Intercept) gcsecnt 530s 5.64 2.47 530s > 530s > cat('Time elapsed: ', {.ot <- .pt; (.pt <- proc.time()) - .ot},'\n') # "stats" 530s Time elapsed: 0.581 0.008 0.591 0 0 530s > 530s > ## Hsb82 -------------- Data --------------------- 530s > lmer(mAch ~ meanses*cses + sector*cses + (cses|school), Hsb82, 530s + control = old_optimizer) 530s Linear mixed model fit by REML ['lmerMod'] 530s Formula: mAch ~ meanses * cses + sector * cses + (cses | school) 530s Data: Hsb82 530s REML criterion at convergence: 46503.7 530s Random effects: 530s Groups Name Std.Dev. Corr 530s school (Intercept) 1.543 530s cses 0.318 0.39 530s Residual 6.060 530s Number of obs: 7185, groups: school, 160 530s Fixed Effects: 530s (Intercept) meanses cses 530s 12.13 5.33 2.95 530s sectorCatholic meanses:cses cses:sectorCatholic 530s 1.23 1.04 -1.64 530s > 530s > ## Oxford ------------- Data --------------------- 530s > (fm07 <- lmer(height ~ age + I(age^2) + I(age^3) + I(age^4) + 530s + (age + I(age^2)|Subject), data = Oxboys, 530s + control = old_optimizer)) 530s Linear mixed model fit by REML ['lmerMod'] 530s Formula: height ~ age + I(age^2) + I(age^3) + I(age^4) + (age + I(age^2) | 530s Subject) 530s Data: Oxboys 530s REML criterion at convergence: 627.908 530s Random effects: 530s Groups Name Std.Dev. Corr 530s Subject (Intercept) 8.002 530s age 1.692 0.61 530s I(age^2) 0.821 0.22 0.66 530s Residual 0.466 530s Number of obs: 234, groups: Subject, 26 530s Fixed Effects: 530s (Intercept) age I(age^2) I(age^3) I(age^4) 530s 149.019 6.174 1.128 0.454 -0.377 530s > (fm08 <- lmer(height ~ poly(age,4) + 530s + (age + I(age^2)|Subject), data = Oxboys, 530s + control = old_optimizer)) 531s Linear mixed model fit by REML ['lmerMod'] 531s Formula: height ~ poly(age, 4) + (age + I(age^2) | Subject) 531s Data: Oxboys 531s REML criterion at convergence: 616.869 531s Random effects: 531s Groups Name Std.Dev. Corr 531s Subject (Intercept) 8.002 531s age 1.692 0.61 531s I(age^2) 0.821 0.22 0.66 531s Residual 0.466 531s Number of obs: 234, groups: Subject, 26 531s Fixed Effects: 531s (Intercept) poly(age, 4)1 poly(age, 4)2 poly(age, 4)3 poly(age, 4)4 531s 149.520 64.541 4.203 1.291 -0.585 531s > anova(fm07, fm08) 531s refitting model(s) with ML (instead of REML) 531s Data: Oxboys 531s Models: 531s fm07: height ~ age + I(age^2) + I(age^3) + I(age^4) + (age + I(age^2) | Subject) 531s fm08: height ~ poly(age, 4) + (age + I(age^2) | Subject) 531s npar AIC BIC logLik deviance Chisq Df Pr(>Chisq) 531s fm07 12 649.3 690.8 -312.7 625.3 531s fm08 12 649.3 690.8 -312.7 625.3 0 0 531s > stopifnot(all.equal(logLik(fm07, REML=FALSE), 531s + logLik(fm08, REML=FALSE), tol=1e-07)) 531s > cat('Time elapsed: ', {.ot <- .pt; (.pt <- proc.time()) - .ot},'\n') # "stats" 531s Time elapsed: 0.669 0.004 0.674 0 0 531s > 531s > ## ScotsSec ----------- Data --------------------- 531s > cntr <- list() 531s > (fmS1 <- lmer(attain ~ verbal * sex + (1|primary) + (1|second), ScotsSec, 531s + verbose = 1, 531s + control = old_optimizer)) 531s start par. = 0.450039 0.236489 fn = 14905 531s At return 531s eval: 34 fn: 14868.325 par: 0.254492 0.0588856 531s Linear mixed model fit by REML ['lmerMod'] 531s Formula: attain ~ verbal * sex + (1 | primary) + (1 | second) 531s Data: ScotsSec 531s REML criterion at convergence: 14868.3 531s Random effects: 531s Groups Name Std.Dev. 531s primary (Intercept) 0.525 531s second (Intercept) 0.121 531s Residual 2.062 531s Number of obs: 3435, groups: primary, 148; second, 19 531s Fixed Effects: 531s (Intercept) verbal sexF verbal:sexF 531s 5.91471 0.15836 0.12155 0.00259 531s > #(fmS2 <- lmer(attain ~ verbal * sex + (1|primary) + (1|second), ScotsSec, 531s > # control = c(cntr, list(niterEM = 40)))) 531s > ## fmS1 and fmS2 should be essentially identical when optimizing with nlminb 531s > ## The fits are substantially different when optimizing with optim 531s > ## 531s > (fmS3 <- lmer(attain ~ verbal + sex + (1|primary) + (1|second), ScotsSec, 531s + control = old_optimizer)) 531s Linear mixed model fit by REML ['lmerMod'] 531s Formula: attain ~ verbal + sex + (1 | primary) + (1 | second) 531s Data: ScotsSec 531s REML criterion at convergence: 14859.9 531s Random effects: 531s Groups Name Std.Dev. 531s primary (Intercept) 0.526 531s second (Intercept) 0.120 531s Residual 2.062 531s Number of obs: 3435, groups: primary, 148; second, 19 531s Fixed Effects: 531s (Intercept) verbal sexF 531s 5.919 0.160 0.116 531s > (fmS4 <- lmer(attain ~ verbal + sex + (1|primary) + (sex|second), ScotsSec, 531s + control = old_optimizer)) 531s Linear mixed model fit by REML ['lmerMod'] 531s Formula: attain ~ verbal + sex + (1 | primary) + (sex | second) 531s Data: ScotsSec 531s REML criterion at convergence: 14848.3 531s Random effects: 531s Groups Name Std.Dev. Corr 531s primary (Intercept) 0.518 531s second (Intercept) 0.215 531s sexF 0.382 -0.80 531s Residual 2.054 531s Number of obs: 3435, groups: primary, 148; second, 19 531s Fixed Effects: 531s (Intercept) verbal sexF 531s 5.9274 0.1596 0.0984 531s > ## 531s > anova(fmS1, fmS3, fmS4) 531s refitting model(s) with ML (instead of REML) 531s Data: ScotsSec 531s Models: 531s fmS3: attain ~ verbal + sex + (1 | primary) + (1 | second) 531s fmS1: attain ~ verbal * sex + (1 | primary) + (1 | second) 531s fmS4: attain ~ verbal + sex + (1 | primary) + (sex | second) 531s npar AIC BIC logLik deviance Chisq Df Pr(>Chisq) 531s fmS3 6 14855 14892 -7421 14843 531s fmS1 7 14857 14900 -7421 14843 0.23 1 0.6318 531s fmS4 8 14848 14897 -7416 14832 10.50 1 0.0012 531s > 531s > cat('Time elapsed: ', {.ot <- .pt; (.pt <- proc.time()) - .ot},'\n') # "stats" 531s Time elapsed: 0.608 0 0.611 0 0 531s > 531s 531s R version 4.3.2 (2023-10-31) -- "Eye Holes" 531s Copyright (C) 2023 The R Foundation for Statistical Computing 531s Platform: x86_64-pc-linux-gnu (64-bit) 531s 531s R is free software and comes with ABSOLUTELY NO WARRANTY. 531s You are welcome to redistribute it under certain conditions. 531s Type 'license()' or 'licence()' for distribution details. 531s 531s R is a collaborative project with many contributors. 531s Type 'contributors()' for more information and 531s 'citation()' on how to cite R or R packages in publications. 531s 531s Type 'demo()' for some demos, 'help()' for on-line help, or 531s 'help.start()' for an HTML browser interface to help. 531s Type 'q()' to quit R. 531s 531s > #### tests/versions.R 531s > ## Need this only as long as all other *.R test files, having a matching *.Rout 531s > 531s > library("mlmRev", verbose=TRUE) 531s Loading required package: lme4 531s Loading required package: Matrix 533s > 533s > for(p in c("mlmRev", "lme4", "Matrix")) { 533s + print(packageDescription(p)); cat(rep.int("-",60), "\n", sep="") } 533s Package: mlmRev 533s Version: 1.0-8 533s Date: 2020-04-04 533s Title: Examples from Multilevel Modelling Software Review 533s Author: Douglas Bates , Martin Maechler 533s and Ben Bolker 533s Contact: LME4 Authors 533s Maintainer: Steve Walker 533s Description: Data and examples from a multilevel modelling software 533s review as well as other well-known data sets from the 533s multilevel modelling literature. 533s Depends: lme4, R (>= 2.10) 533s Suggests: lattice 533s LazyData: yes 533s License: GPL (>= 2) 533s NeedsCompilation: no 533s Packaged: 2020-04-05 02:41:42 UTC; stevew 533s Repository: CRAN 533s Date/Publication: 2020-04-05 04:50:05 UTC 533s Built: R 4.0.1; ; 'Sat, 30 May 2020 21:39:24 +0000'; unix 533s 533s -- File: /usr/lib/R/site-library/mlmRev/Meta/package.rds 533s ------------------------------------------------------------ 533s Package: lme4 533s Version: 1.1-35.1 533s Title: Linear Mixed-Effects Models using 'Eigen' and S4 533s Authors@R: c( person("Douglas","Bates", role="aut", 533s comment=c(ORCID="0000-0001-8316-9503")), 533s person("Martin","Maechler", role="aut", 533s comment=c(ORCID="0000-0002-8685-9910")), 533s person("Ben","Bolker",email="bbolker+lme4@gmail.com", 533s role=c("aut","cre"), comment=c(ORCID="0000-0002-2127-0443")), 533s person("Steven","Walker",role="aut", 533s comment=c(ORCID="0000-0002-4394-9078")), person("Rune Haubo 533s Bojesen","Christensen", role="ctb", 533s comment=c(ORCID="0000-0002-4494-3399")), 533s person("Henrik","Singmann", role="ctb", 533s comment=c(ORCID="0000-0002-4842-3657")), person("Bin", "Dai", 533s role="ctb"), person("Fabian", "Scheipl", role="ctb", 533s comment=c(ORCID="0000-0001-8172-3603")), person("Gabor", 533s "Grothendieck", role="ctb"), person("Peter", "Green", 533s role="ctb", comment=c(ORCID="0000-0002-0238-9852")), 533s person("John", "Fox", role="ctb"), person("Alexander", "Bauer", 533s role="ctb"), person("Pavel N.", "Krivitsky", 533s role=c("ctb","cph"), comment=c(ORCID="0000-0002-9101-3362", 533s "shared copyright on simulate.formula")), person("Emi", 533s "Tanaka", role = "ctb", comment = 533s c(ORCID="0000-0002-1455-259X")) ) 533s Description: Fit linear and generalized linear mixed-effects models. 533s The models and their components are represented using S4 533s classes and methods. The core computational algorithms are 533s implemented using the 'Eigen' C++ library for numerical linear 533s algebra and 'RcppEigen' "glue". 533s Depends: R (>= 3.5.0), Matrix (>= 1.2-1), methods, stats 533s LinkingTo: Rcpp (>= 0.10.5), RcppEigen (>= 0.3.3.9.4), Matrix 533s Imports: graphics, grid, splines, utils, parallel, MASS, lattice, boot, 533s nlme (>= 3.1-123), minqa (>= 1.1.15), nloptr (>= 1.0.4) 533s Suggests: knitr, rmarkdown, MEMSS, testthat (>= 0.8.1), ggplot2, 533s mlmRev, optimx (>= 2013.8.6), gamm4, pbkrtest, HSAUR3, 533s numDeriv, car, dfoptim, mgcv, statmod, rr2, semEff, tibble, 533s merDeriv 533s VignetteBuilder: knitr 533s LazyData: yes 533s License: GPL (>= 2) 533s URL: https://github.com/lme4/lme4/ 533s BugReports: https://github.com/lme4/lme4/issues 533s Encoding: UTF-8 533s NeedsCompilation: yes 533s Packaged: 2023-11-04 19:46:00 UTC; bolker 533s Author: Douglas Bates [aut] (), 533s Martin Maechler [aut] 533s (), Ben Bolker [aut, 533s cre] (), Steven Walker 533s [aut] (), Rune Haubo 533s Bojesen Christensen [ctb] 533s (), Henrik Singmann 533s [ctb] (), Bin Dai [ctb], 533s Fabian Scheipl [ctb] (), 533s Gabor Grothendieck [ctb], Peter Green [ctb] 533s (), John Fox [ctb], 533s Alexander Bauer [ctb], Pavel N. Krivitsky [ctb, cph] 533s (, shared copyright on 533s simulate.formula), Emi Tanaka [ctb] 533s () 533s Maintainer: Ben Bolker 533s Repository: CRAN 533s Date/Publication: 2023-11-05 06:20:02 UTC 533s Built: R 4.3.2; x86_64-pc-linux-gnu; 'Mon, 20 Nov 2023 07:45:20 -0600'; 533s unix 533s 533s -- File: /usr/lib/R/site-library/lme4/Meta/package.rds 533s ------------------------------------------------------------ 533s Package: Matrix 533s Version: 1.6-5 533s VersionNote: do also bump src/version.h, inst/include/Matrix/version.h 533s Date: 2024-01-06 533s Priority: recommended 533s Title: Sparse and Dense Matrix Classes and Methods 533s Description: A rich hierarchy of sparse and dense matrix classes, 533s including general, symmetric, triangular, and diagonal matrices 533s with numeric, logical, or pattern entries. Efficient methods 533s for operating on such matrices, often wrapping the 'BLAS', 533s 'LAPACK', and 'SuiteSparse' libraries. 533s License: GPL (>= 2) | file LICENCE 533s URL: https://Matrix.R-forge.R-project.org 533s BugReports: https://R-forge.R-project.org/tracker/?atid=294&group_id=61 533s Contact: Matrix-authors@R-project.org 533s Authors@R: c(person("Douglas", "Bates", role = "aut", comment = c(ORCID 533s = "0000-0001-8316-9503")), person("Martin", "Maechler", role = 533s c("aut", "cre"), email = "mmaechler+Matrix@gmail.com", comment 533s = c(ORCID = "0000-0002-8685-9910")), person("Mikael", "Jagan", 533s role = "aut", comment = c(ORCID = "0000-0002-3542-2938")), 533s person("Timothy A.", "Davis", role = "ctb", comment = c(ORCID = 533s "0000-0001-7614-6899", "SuiteSparse libraries, notably CHOLMOD 533s and AMD", "collaborators listed in 533s dir(pattern=\"^[A-Z]+[.]txt$\", full.names=TRUE, 533s system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"))")), 533s person("Jens", "Oehlschlägel", role = "ctb", comment = "initial 533s nearPD()"), person("Jason", "Riedy", role = "ctb", comment = 533s c(ORCID = "0000-0002-4345-4200", "GNU Octave's condest() and 533s onenormest()", "Copyright: Regents of the University of 533s California")), person("R Core Team", role = "ctb", comment = 533s "base R's matrix implementation")) 533s Depends: R (>= 3.5.0), methods 533s Imports: grDevices, graphics, grid, lattice, stats, utils 533s Suggests: MASS, datasets, sfsmisc, tools 533s Enhances: SparseM, graph 533s LazyData: no 533s LazyDataNote: not possible, since we use data/*.R and our S4 classes 533s BuildResaveData: no 533s Encoding: UTF-8 533s NeedsCompilation: yes 533s Packaged: 2024-01-11 08:36:29 UTC; maechler 533s Author: Douglas Bates [aut] (), 533s Martin Maechler [aut, cre] 533s (), Mikael Jagan [aut] 533s (), Timothy A. Davis 533s [ctb] (, SuiteSparse 533s libraries, notably CHOLMOD and AMD, collaborators listed in 533s dir(pattern="^[A-Z]+[.]txt$", full.names=TRUE, 533s system.file("doc", "SuiteSparse", package="Matrix"))), Jens 533s Oehlschlägel [ctb] (initial nearPD()), Jason Riedy [ctb] 533s (, GNU Octave's 533s condest() and onenormest(), Copyright: Regents of the 533s University of California), R Core Team [ctb] (base R's matrix 533s implementation) 533s Maintainer: Martin Maechler 533s Repository: CRAN 533s Date/Publication: 2024-01-11 17:50:15 UTC 533s Built: R 4.3.2; x86_64-pc-linux-gnu; 'Thu, 11 Jan 2024 21:33:49 -0600'; 533s unix 533s 533s -- File: /usr/lib/R/library/Matrix/Meta/package.rds 533s ------------------------------------------------------------ 533s > 533s > sessionInfo() 533s R version 4.3.2 (2023-10-31) 533s Platform: x86_64-pc-linux-gnu (64-bit) 533s Running under: Ubuntu Noble Numbat (development branch) 533s 533s Matrix products: default 533s BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.12.0 533s LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0 533s 533s locale: 533s [1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8 533s [4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8 533s [7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C 533s [10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C 533s 533s time zone: Etc/UTC 533s tzcode source: system (glibc) 533s 533s attached base packages: 533s [1] stats graphics grDevices utils datasets methods base 533s 533s other attached packages: 533s [1] mlmRev_1.0-8 lme4_1.1-35.1 Matrix_1.6-5 533s 533s loaded via a namespace (and not attached): 533s [1] minqa_1.2.6 MASS_7.3-60.0.1 compiler_4.3.2 Rcpp_1.0.12 533s [5] splines_4.3.2 nlme_3.1-164 grid_4.3.2 nloptr_2.0.3 533s [9] boot_1.3-30 lattice_0.22-5 533s > ## host specific : 533s > structure(Sys.info()[c(4,5,1:3)], class="simple.list") 533s _ 533s nodename autopkgtest 533s machine x86_64 533s sysname Linux 533s release 6.8.0-11-generic 533s version #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 533s > 533s autopkgtest [07:06:18]: test run-unit-test: -----------------------] 533s autopkgtest [07:06:18]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 533s run-unit-test PASS 533s autopkgtest [07:06:18]: test pkg-r-autopkgtest: preparing testbed 684s autopkgtest [07:08:49]: testbed dpkg architecture: amd64 684s autopkgtest [07:08:49]: testbed apt version: 2.7.12 684s autopkgtest [07:08:49]: test architecture: i386 684s autopkgtest [07:08:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup 684s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 684s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3970 kB] 685s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 685s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.7 kB] 685s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 685s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [450 kB] 685s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [685 kB] 685s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 685s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 685s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 685s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 685s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1300 kB] 685s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4413 kB] 685s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 685s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [96.8 kB] 685s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [27.6 kB] 685s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 688s Fetched 11.7 MB in 2s (7430 kB/s) 688s Reading package lists... 690s Reading package lists... 690s Building dependency tree... 690s Reading state information... 691s Calculating upgrade... 691s The following packages will be upgraded: 691s libc-bin libc6 locales 691s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 691s Need to get 8176 kB of archives. 691s After this operation, 2048 B of additional disk space will be used. 691s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc6 amd64 2.39-0ubuntu6 [3262 kB] 691s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libc-bin amd64 2.39-0ubuntu6 [682 kB] 691s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 locales all 2.39-0ubuntu6 [4232 kB] 691s Preconfiguring packages ... 691s Fetched 8176 kB in 0s (95.6 MB/s) 692s (Reading database ... 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linux-generic is already the newest version (6.8.0-11.11+1). 703s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 704s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 704s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 704s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 706s Reading package lists... 706s Reading package lists... 706s Building dependency tree... 706s Reading state information... 706s Calculating upgrade... 707s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 707s Reading package lists... 707s Building dependency tree... 707s Reading state information... 707s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 707s autopkgtest [07:09:12]: rebooting testbed after setup commands that affected boot 733s Note, using file '/tmp/autopkgtest.UJ3h2w/3-autopkgtest-satdep.dsc' to get the build dependencies 733s Reading package lists... 733s Building dependency tree... 733s Reading state information... 734s Starting pkgProblemResolver with broken count: 0 734s Starting 2 pkgProblemResolver with broken count: 0 734s Done 734s The following NEW packages will be installed: 734s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 734s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 734s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 734s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 734s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8 734s libatomic1 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 734s libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 734s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 734s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 734s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev 734s liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnlopt0 734s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 734s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 734s libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 libreadline-dev 734s libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 734s libtiff6 libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 734s libxft2 libxrender1 libxss1 libxt6 linux-libc-dev littler pkg-config 734s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-cran-boot 734s r-cran-brio r-cran-callr r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj 734s r-cran-digest r-cran-evaluate r-cran-fansi r-cran-fs r-cran-glue 734s r-cran-jsonlite r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-lme4 734s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-minqa r-cran-mlmrev 734s r-cran-nlme r-cran-nloptr r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 734s r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps 734s r-cran-r6 r-cran-rcpp r-cran-rcppeigen r-cran-rematch2 r-cran-rlang 734s r-cran-rprojroot r-cran-statmod r-cran-testthat r-cran-tibble r-cran-utf8 734s r-cran-vctrs r-cran-waldo r-cran-withr rpcsvc-proto unzip x11-common 734s xdg-utils zip zlib1g-dev 734s 0 upgraded, 151 newly installed, 0 to remove and 0 not upgraded. 734s Need to get 170 MB of archives. 734s After this operation, 514 MB of additional disk space will be used. 734s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu6 [20.4 kB] 734s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 734s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 734s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 734s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu6 [2126 kB] 734s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 734s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 734s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 734s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 734s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 734s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 734s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 734s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 734s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 734s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 734s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 734s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 734s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 734s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 734s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 734s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 734s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 734s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 735s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 735s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 735s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 735s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 735s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 735s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 735s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 735s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 735s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 735s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 735s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 735s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 735s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 735s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 735s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 735s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 735s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 735s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 735s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 735s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 735s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 735s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 735s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 735s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 735s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 735s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 735s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 735s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 735s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 735s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 735s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 735s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 735s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 735s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 735s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 735s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 735s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 735s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 735s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 735s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 735s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 735s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 735s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 735s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 735s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 735s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 735s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 735s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 735s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 735s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 735s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 735s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 735s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 735s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 735s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 735s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 735s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 735s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 735s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 735s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 735s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 735s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 735s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 735s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 735s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 735s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 735s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 735s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 735s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 735s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.14-1 [779 kB] 735s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 735s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 735s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 735s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 735s Get:98 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 735s Get:99 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 735s Get:100 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 735s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 735s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 735s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 735s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 735s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 735s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 735s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-boot all 1.3-30-1 [619 kB] 735s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 735s Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 735s Get:110 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 735s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 735s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 735s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 735s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 735s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 735s Get:116 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 735s Get:117 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 735s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 735s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 735s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 735s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 735s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 735s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 735s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 735s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 735s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 735s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 735s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 735s Get:129 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 735s Get:130 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 735s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-minqa amd64 1.2.6-1 [116 kB] 735s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 libnlopt0 amd64 2.7.1-5build2 [184 kB] 735s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 735s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 735s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 735s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 735s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 735s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 735s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 735s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 735s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 735s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 735s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 735s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 735s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 735s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 735s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nloptr amd64 2.0.3-1 [381 kB] 735s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppeigen amd64 0.3.3.9.4-1 [1189 kB] 735s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 735s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lme4 amd64 1.1-35.1-4 [4138 kB] 735s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mlmrev all 1.0-8-2build1 [1806 kB] 736s Preconfiguring packages ... 736s Fetched 170 MB in 1s (136 MB/s) 736s Selecting previously unselected package libc-dev-bin. 736s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 736s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu6_amd64.deb ... 736s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 736s Selecting previously unselected package linux-libc-dev:amd64. 736s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 736s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 737s Selecting previously unselected package libcrypt-dev:amd64. 737s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 737s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 737s Selecting previously unselected package rpcsvc-proto. 737s Preparing to unpack .../003-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 737s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 737s Selecting previously unselected package libc6-dev:amd64. 737s Preparing to unpack .../004-libc6-dev_2.39-0ubuntu6_amd64.deb ... 737s Unpacking libc6-dev:amd64 (2.39-0ubuntu6) ... 737s Selecting previously unselected package libisl23:amd64. 737s Preparing to unpack .../005-libisl23_0.26-3_amd64.deb ... 737s Unpacking libisl23:amd64 (0.26-3) ... 737s Selecting previously unselected package libmpc3:amd64. 737s Preparing to unpack .../006-libmpc3_1.3.1-1_amd64.deb ... 737s Unpacking libmpc3:amd64 (1.3.1-1) ... 737s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 737s Preparing to unpack .../007-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 737s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 737s Selecting previously unselected package cpp-13. 737s Preparing to unpack .../008-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 737s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 737s Selecting previously unselected package cpp-x86-64-linux-gnu. 737s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 737s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 737s Selecting previously unselected package cpp. 737s Preparing to unpack .../010-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 737s Unpacking cpp (4:13.2.0-7ubuntu1) ... 737s Selecting previously unselected package libcc1-0:amd64. 737s Preparing to unpack .../011-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 737s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 737s Selecting previously unselected package libgomp1:amd64. 737s Preparing to unpack .../012-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 737s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 737s Selecting previously unselected package libitm1:amd64. 737s Preparing to unpack .../013-libitm1_14-20240303-1ubuntu1_amd64.deb ... 737s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 737s Selecting previously unselected package libatomic1:amd64. 737s Preparing to unpack .../014-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 737s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 737s Selecting previously unselected package libasan8:amd64. 737s Preparing to unpack .../015-libasan8_14-20240303-1ubuntu1_amd64.deb ... 737s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 737s Selecting previously unselected package liblsan0:amd64. 737s Preparing to unpack .../016-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 737s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 737s Selecting previously unselected package libtsan2:amd64. 737s Preparing to unpack .../017-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 737s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 737s Selecting previously unselected package libubsan1:amd64. 737s Preparing to unpack .../018-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 737s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 738s Selecting previously unselected package libhwasan0:amd64. 738s Preparing to unpack .../019-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 738s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 738s Selecting previously unselected package libquadmath0:amd64. 738s Preparing to unpack .../020-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 738s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 738s Selecting previously unselected package libgcc-13-dev:amd64. 738s Preparing to unpack .../021-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 738s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 738s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 738s Preparing to unpack .../022-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 738s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 738s Selecting previously unselected package gcc-13. 738s Preparing to unpack .../023-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 738s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 738s Selecting previously unselected package gcc-x86-64-linux-gnu. 738s Preparing to unpack .../024-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 738s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 738s Selecting previously unselected package gcc. 738s Preparing to unpack .../025-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 738s Unpacking gcc (4:13.2.0-7ubuntu1) ... 738s Selecting previously unselected package libstdc++-13-dev:amd64. 738s Preparing to unpack .../026-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 738s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 738s Selecting previously unselected package g++-13-x86-64-linux-gnu. 738s Preparing to unpack .../027-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 738s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 739s Selecting previously unselected package g++-13. 739s Preparing to unpack .../028-g++-13_13.2.0-17ubuntu2_amd64.deb ... 739s Unpacking g++-13 (13.2.0-17ubuntu2) ... 739s Selecting previously unselected package g++-x86-64-linux-gnu. 739s Preparing to unpack .../029-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 739s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 739s Selecting previously unselected package g++. 739s Preparing to unpack .../030-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 739s Unpacking g++ (4:13.2.0-7ubuntu1) ... 739s Selecting previously unselected package build-essential. 739s Preparing to unpack .../031-build-essential_12.10ubuntu1_amd64.deb ... 739s Unpacking build-essential (12.10ubuntu1) ... 739s Selecting previously unselected package dctrl-tools. 739s Preparing to unpack .../032-dctrl-tools_2.24-3build2_amd64.deb ... 739s Unpacking dctrl-tools (2.24-3build2) ... 739s Selecting previously unselected package fonts-dejavu-mono. 739s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8_all.deb ... 739s Unpacking fonts-dejavu-mono (2.37-8) ... 739s Selecting previously unselected package fonts-dejavu-core. 739s Preparing to unpack .../034-fonts-dejavu-core_2.37-8_all.deb ... 739s Unpacking fonts-dejavu-core (2.37-8) ... 739s Selecting previously unselected package fontconfig-config. 739s Preparing to unpack .../035-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 739s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 739s Selecting previously unselected package libfontconfig1:amd64. 739s Preparing to unpack .../036-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 739s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 739s Selecting previously unselected package fontconfig. 739s Preparing to unpack .../037-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 739s Unpacking fontconfig (2.15.0-1ubuntu1) ... 739s Selecting previously unselected package libgfortran5:amd64. 739s Preparing to unpack .../038-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 739s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 739s Selecting previously unselected package libgfortran-13-dev:amd64. 739s Preparing to unpack .../039-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 739s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 739s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 739s Preparing to unpack .../040-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 739s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 740s Selecting previously unselected package gfortran-13. 740s Preparing to unpack .../041-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 740s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 740s Selecting previously unselected package gfortran-x86-64-linux-gnu. 740s Preparing to unpack .../042-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 740s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 740s Selecting previously unselected package gfortran. 740s Preparing to unpack .../043-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 740s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 740s Selecting previously unselected package icu-devtools. 740s Preparing to unpack .../044-icu-devtools_74.2-1ubuntu1_amd64.deb ... 740s Unpacking icu-devtools (74.2-1ubuntu1) ... 740s Selecting previously unselected package libblas3:amd64. 740s Preparing to unpack .../045-libblas3_3.12.0-3_amd64.deb ... 740s Unpacking libblas3:amd64 (3.12.0-3) ... 740s Selecting previously unselected package libblas-dev:amd64. 740s Preparing to unpack .../046-libblas-dev_3.12.0-3_amd64.deb ... 740s Unpacking libblas-dev:amd64 (3.12.0-3) ... 740s Selecting previously unselected package libbz2-dev:amd64. 740s Preparing to unpack .../047-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 740s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 740s Selecting previously unselected package libpixman-1-0:amd64. 740s Preparing to unpack .../048-libpixman-1-0_0.42.2-1_amd64.deb ... 740s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 740s Selecting previously unselected package libxcb-render0:amd64. 740s Preparing to unpack .../049-libxcb-render0_1.15-1_amd64.deb ... 740s Unpacking libxcb-render0:amd64 (1.15-1) ... 740s Selecting previously unselected package libxcb-shm0:amd64. 740s Preparing to unpack .../050-libxcb-shm0_1.15-1_amd64.deb ... 740s Unpacking libxcb-shm0:amd64 (1.15-1) ... 740s Selecting previously unselected package libxrender1:amd64. 740s Preparing to unpack .../051-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 740s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 740s Selecting previously unselected package libcairo2:amd64. 740s Preparing to unpack .../052-libcairo2_1.18.0-1_amd64.deb ... 740s Unpacking libcairo2:amd64 (1.18.0-1) ... 740s Selecting previously unselected package libdatrie1:amd64. 740s Preparing to unpack .../053-libdatrie1_0.2.13-3_amd64.deb ... 740s Unpacking libdatrie1:amd64 (0.2.13-3) ... 740s Selecting previously unselected package libdeflate0:amd64. 740s Preparing to unpack .../054-libdeflate0_1.19-1_amd64.deb ... 740s Unpacking libdeflate0:amd64 (1.19-1) ... 740s Selecting previously unselected package libgraphite2-3:amd64. 740s Preparing to unpack .../055-libgraphite2-3_1.3.14-2_amd64.deb ... 740s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 740s Selecting previously unselected package libharfbuzz0b:amd64. 740s Preparing to unpack .../056-libharfbuzz0b_8.3.0-2_amd64.deb ... 740s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 740s Selecting previously unselected package x11-common. 740s Preparing to unpack .../057-x11-common_1%3a7.7+23ubuntu2_all.deb ... 740s Unpacking x11-common (1:7.7+23ubuntu2) ... 740s Selecting previously unselected package libice6:amd64. 740s Preparing to unpack .../058-libice6_2%3a1.0.10-1build2_amd64.deb ... 740s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 740s Selecting previously unselected package libicu-dev:amd64. 740s Preparing to unpack .../059-libicu-dev_74.2-1ubuntu1_amd64.deb ... 740s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 740s Selecting previously unselected package libjpeg-turbo8:amd64. 740s Preparing to unpack .../060-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 740s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 740s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 740s Preparing to unpack .../061-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 740s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 741s Selecting previously unselected package libjpeg8:amd64. 741s Preparing to unpack .../062-libjpeg8_8c-2ubuntu11_amd64.deb ... 741s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 741s Selecting previously unselected package libjpeg8-dev:amd64. 741s Preparing to unpack .../063-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 741s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 741s Selecting previously unselected package libjpeg-dev:amd64. 741s Preparing to unpack .../064-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 741s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 741s Selecting previously unselected package liblapack3:amd64. 741s Preparing to unpack .../065-liblapack3_3.12.0-3_amd64.deb ... 741s Unpacking liblapack3:amd64 (3.12.0-3) ... 741s Selecting previously unselected package liblapack-dev:amd64. 741s Preparing to unpack .../066-liblapack-dev_3.12.0-3_amd64.deb ... 741s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 741s Selecting previously unselected package liblerc4:amd64. 741s Preparing to unpack .../067-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 741s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 741s Selecting previously unselected package libncurses-dev:amd64. 741s Preparing to unpack .../068-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 741s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 741s Selecting previously unselected package libthai-data. 741s Preparing to unpack .../069-libthai-data_0.1.29-2_all.deb ... 741s Unpacking libthai-data (0.1.29-2) ... 741s Selecting previously unselected package libthai0:amd64. 741s Preparing to unpack .../070-libthai0_0.1.29-2_amd64.deb ... 741s Unpacking libthai0:amd64 (0.1.29-2) ... 741s Selecting previously unselected package libpango-1.0-0:amd64. 741s Preparing to unpack .../071-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 741s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 741s Selecting previously unselected package libpangoft2-1.0-0:amd64. 741s Preparing to unpack .../072-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 741s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 741s Selecting previously unselected package libpangocairo-1.0-0:amd64. 741s Preparing to unpack .../073-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 741s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 741s Selecting previously unselected package libpaper1:amd64. 741s Preparing to unpack .../074-libpaper1_1.1.29_amd64.deb ... 741s Unpacking libpaper1:amd64 (1.1.29) ... 741s Selecting previously unselected package libpaper-utils. 741s Preparing to unpack .../075-libpaper-utils_1.1.29_amd64.deb ... 741s Unpacking libpaper-utils (1.1.29) ... 741s Selecting previously unselected package libpcre2-16-0:amd64. 741s Preparing to unpack .../076-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 741s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 741s Selecting previously unselected package libpcre2-32-0:amd64. 741s Preparing to unpack .../077-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 741s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 741s Selecting previously unselected package libpcre2-posix3:amd64. 741s Preparing to unpack .../078-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 741s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 741s Selecting previously unselected package libpcre2-dev:amd64. 741s Preparing to unpack .../079-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 741s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 741s Selecting previously unselected package libpkgconf3:amd64. 741s Preparing to unpack .../080-libpkgconf3_1.8.1-2_amd64.deb ... 741s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 741s Selecting previously unselected package zlib1g-dev:amd64. 741s Preparing to unpack .../081-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 741s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 741s Selecting previously unselected package libpng-dev:amd64. 741s Preparing to unpack .../082-libpng-dev_1.6.43-1_amd64.deb ... 741s Unpacking libpng-dev:amd64 (1.6.43-1) ... 741s Selecting previously unselected package libreadline-dev:amd64. 741s Preparing to unpack .../083-libreadline-dev_8.2-3_amd64.deb ... 741s Unpacking libreadline-dev:amd64 (8.2-3) ... 741s Selecting previously unselected package libsharpyuv0:amd64. 741s Preparing to unpack .../084-libsharpyuv0_1.3.2-0.4_amd64.deb ... 741s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 741s Selecting previously unselected package libsm6:amd64. 741s Preparing to unpack .../085-libsm6_2%3a1.2.3-1build2_amd64.deb ... 741s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 741s Selecting previously unselected package libtcl8.6:amd64. 741s Preparing to unpack .../086-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 741s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 742s Selecting previously unselected package libjbig0:amd64. 742s Preparing to unpack .../087-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 742s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 742s Selecting previously unselected package libwebp7:amd64. 742s Preparing to unpack .../088-libwebp7_1.3.2-0.4_amd64.deb ... 742s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 742s Selecting previously unselected package libtiff6:amd64. 742s Preparing to unpack .../089-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 742s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 742s Selecting previously unselected package libxft2:amd64. 742s Preparing to unpack .../090-libxft2_2.3.6-1_amd64.deb ... 742s Unpacking libxft2:amd64 (2.3.6-1) ... 742s Selecting previously unselected package libxss1:amd64. 742s Preparing to unpack .../091-libxss1_1%3a1.2.3-1build2_amd64.deb ... 742s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 742s Selecting previously unselected package libtk8.6:amd64. 742s Preparing to unpack .../092-libtk8.6_8.6.14-1_amd64.deb ... 742s Unpacking libtk8.6:amd64 (8.6.14-1) ... 742s Selecting previously unselected package libxt6:amd64. 742s Preparing to unpack .../093-libxt6_1%3a1.2.1-1.1_amd64.deb ... 742s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 742s Selecting previously unselected package zip. 742s Preparing to unpack .../094-zip_3.0-13_amd64.deb ... 742s Unpacking zip (3.0-13) ... 742s Selecting previously unselected package unzip. 742s Preparing to unpack .../095-unzip_6.0-28ubuntu3_amd64.deb ... 742s Unpacking unzip (6.0-28ubuntu3) ... 742s Selecting previously unselected package xdg-utils. 742s Preparing to unpack .../096-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 742s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 742s Selecting previously unselected package r-base-core. 742s Preparing to unpack .../097-r-base-core_4.3.2-1build1_amd64.deb ... 742s Unpacking r-base-core (4.3.2-1build1) ... 742s Selecting previously unselected package r-cran-littler. 742s Preparing to unpack .../098-r-cran-littler_0.3.19-1_amd64.deb ... 742s Unpacking r-cran-littler (0.3.19-1) ... 742s Selecting previously unselected package littler. 742s Preparing to unpack .../099-littler_0.3.19-1_all.deb ... 742s Unpacking littler (0.3.19-1) ... 742s Selecting previously unselected package pkgconf-bin. 742s Preparing to unpack .../100-pkgconf-bin_1.8.1-2_amd64.deb ... 742s Unpacking pkgconf-bin (1.8.1-2) ... 742s Selecting previously unselected package pkgconf:amd64. 742s Preparing to unpack .../101-pkgconf_1.8.1-2_amd64.deb ... 742s Unpacking pkgconf:amd64 (1.8.1-2) ... 742s Selecting previously unselected package pkg-config:amd64. 742s Preparing to unpack .../102-pkg-config_1.8.1-2_amd64.deb ... 742s Unpacking pkg-config:amd64 (1.8.1-2) ... 742s Selecting previously unselected package liblzma-dev:amd64. 742s Preparing to unpack .../103-liblzma-dev_5.4.5-0.3_amd64.deb ... 742s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 742s Selecting previously unselected package r-base-dev. 742s Preparing to unpack .../104-r-base-dev_4.3.2-1build1_all.deb ... 742s Unpacking r-base-dev (4.3.2-1build1) ... 742s Selecting previously unselected package pkg-r-autopkgtest. 742s Preparing to unpack .../105-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 742s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 743s Selecting previously unselected package r-cran-boot. 743s Preparing to unpack .../106-r-cran-boot_1.3-30-1_all.deb ... 743s Unpacking r-cran-boot (1.3-30-1) ... 743s Selecting previously unselected package r-cran-brio. 743s Preparing to unpack .../107-r-cran-brio_1.1.4-1_amd64.deb ... 743s Unpacking r-cran-brio (1.1.4-1) ... 743s Selecting previously unselected package r-cran-ps. 743s Preparing to unpack .../108-r-cran-ps_1.7.6-1_amd64.deb ... 743s Unpacking r-cran-ps (1.7.6-1) ... 743s Selecting previously unselected package r-cran-r6. 743s Preparing to unpack .../109-r-cran-r6_2.5.1-1_all.deb ... 743s Unpacking r-cran-r6 (2.5.1-1) ... 743s Selecting previously unselected package r-cran-processx. 743s Preparing to unpack .../110-r-cran-processx_3.8.3-1_amd64.deb ... 743s Unpacking r-cran-processx (3.8.3-1) ... 743s Selecting previously unselected package r-cran-callr. 743s Preparing to unpack .../111-r-cran-callr_3.7.3-2_all.deb ... 743s Unpacking r-cran-callr (3.7.3-2) ... 743s Selecting previously unselected package r-cran-cli. 743s Preparing to unpack .../112-r-cran-cli_3.6.2-1_amd64.deb ... 743s Unpacking r-cran-cli (3.6.2-1) ... 743s Selecting previously unselected package r-cran-crayon. 743s Preparing to unpack .../113-r-cran-crayon_1.5.2-1_all.deb ... 743s Unpacking r-cran-crayon (1.5.2-1) ... 743s Selecting previously unselected package r-cran-desc. 743s Preparing to unpack .../114-r-cran-desc_1.4.3-1_all.deb ... 743s Unpacking r-cran-desc (1.4.3-1) ... 743s Selecting previously unselected package r-cran-diffobj. 743s Preparing to unpack .../115-r-cran-diffobj_0.3.5-1_amd64.deb ... 743s Unpacking r-cran-diffobj (0.3.5-1) ... 743s Selecting previously unselected package r-cran-digest. 743s Preparing to unpack .../116-r-cran-digest_0.6.34-1_amd64.deb ... 743s Unpacking r-cran-digest (0.6.34-1) ... 743s Selecting previously unselected package r-cran-evaluate. 743s Preparing to unpack .../117-r-cran-evaluate_0.23-1_all.deb ... 743s Unpacking r-cran-evaluate (0.23-1) ... 743s Selecting previously unselected package r-cran-fansi. 743s Preparing to unpack .../118-r-cran-fansi_1.0.5-1_amd64.deb ... 743s Unpacking r-cran-fansi (1.0.5-1) ... 743s Selecting previously unselected package r-cran-fs. 743s Preparing to unpack .../119-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 743s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 743s Selecting previously unselected package r-cran-glue. 743s Preparing to unpack .../120-r-cran-glue_1.7.0-1_amd64.deb ... 743s Unpacking r-cran-glue (1.7.0-1) ... 743s Selecting previously unselected package r-cran-jsonlite. 743s Preparing to unpack .../121-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 743s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 743s Selecting previously unselected package r-cran-lattice. 743s Preparing to unpack .../122-r-cran-lattice_0.22-5-1_amd64.deb ... 743s Unpacking r-cran-lattice (0.22-5-1) ... 743s Selecting previously unselected package r-cran-rlang. 743s Preparing to unpack .../123-r-cran-rlang_1.1.3-1_amd64.deb ... 743s Unpacking r-cran-rlang (1.1.3-1) ... 743s Selecting previously unselected package r-cran-lifecycle. 743s Preparing to unpack .../124-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 743s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 743s Selecting previously unselected package r-cran-matrix. 743s Preparing to unpack .../125-r-cran-matrix_1.6-5-1_amd64.deb ... 743s Unpacking r-cran-matrix (1.6-5-1) ... 743s Selecting previously unselected package r-cran-mass. 743s Preparing to unpack .../126-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 743s Unpacking r-cran-mass (7.3-60.0.1-1) ... 743s Selecting previously unselected package r-cran-nlme. 743s Preparing to unpack .../127-r-cran-nlme_3.1.164-1_amd64.deb ... 743s Unpacking r-cran-nlme (3.1.164-1) ... 743s Selecting previously unselected package r-cran-pkgkitten. 743s Preparing to unpack .../128-r-cran-pkgkitten_0.2.3-1_all.deb ... 743s Unpacking r-cran-pkgkitten (0.2.3-1) ... 744s Selecting previously unselected package r-cran-rcpp. 744s Preparing to unpack .../129-r-cran-rcpp_1.0.12-1_amd64.deb ... 744s Unpacking r-cran-rcpp (1.0.12-1) ... 744s Selecting previously unselected package r-cran-minqa. 744s Preparing to unpack .../130-r-cran-minqa_1.2.6-1_amd64.deb ... 744s Unpacking r-cran-minqa (1.2.6-1) ... 744s Selecting previously unselected package libnlopt0:amd64. 744s Preparing to unpack .../131-libnlopt0_2.7.1-5build2_amd64.deb ... 744s Unpacking libnlopt0:amd64 (2.7.1-5build2) ... 744s Selecting previously unselected package r-cran-magrittr. 744s Preparing to unpack .../132-r-cran-magrittr_2.0.3-1_amd64.deb ... 744s Unpacking r-cran-magrittr (2.0.3-1) ... 744s Selecting previously unselected package r-cran-pkgbuild. 744s Preparing to unpack .../133-r-cran-pkgbuild_1.4.3-1_all.deb ... 744s Unpacking r-cran-pkgbuild (1.4.3-1) ... 744s Selecting previously unselected package r-cran-rprojroot. 744s Preparing to unpack .../134-r-cran-rprojroot_2.0.4-1_all.deb ... 744s Unpacking r-cran-rprojroot (2.0.4-1) ... 744s Selecting previously unselected package r-cran-withr. 744s Preparing to unpack .../135-r-cran-withr_2.5.0-1_all.deb ... 744s Unpacking r-cran-withr (2.5.0-1) ... 744s Selecting previously unselected package r-cran-pkgload. 744s Preparing to unpack .../136-r-cran-pkgload_1.3.4-1_all.deb ... 744s Unpacking r-cran-pkgload (1.3.4-1) ... 744s Selecting previously unselected package r-cran-praise. 744s Preparing to unpack .../137-r-cran-praise_1.0.0-4build1_all.deb ... 744s Unpacking r-cran-praise (1.0.0-4build1) ... 744s Selecting previously unselected package r-cran-utf8. 744s Preparing to unpack .../138-r-cran-utf8_1.2.4-1_amd64.deb ... 744s Unpacking r-cran-utf8 (1.2.4-1) ... 744s Selecting previously unselected package r-cran-vctrs. 744s Preparing to unpack .../139-r-cran-vctrs_0.6.5-1_amd64.deb ... 744s Unpacking r-cran-vctrs (0.6.5-1) ... 744s Selecting previously unselected package r-cran-pillar. 744s Preparing to unpack .../140-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 744s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 744s Selecting previously unselected package r-cran-pkgconfig. 744s Preparing to unpack .../141-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 744s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 744s Selecting previously unselected package r-cran-tibble. 744s Preparing to unpack .../142-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 744s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 744s Selecting previously unselected package r-cran-rematch2. 744s Preparing to unpack .../143-r-cran-rematch2_2.1.2-2build1_all.deb ... 744s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 744s Selecting previously unselected package r-cran-waldo. 744s Preparing to unpack .../144-r-cran-waldo_0.5.2-1build1_all.deb ... 744s Unpacking r-cran-waldo (0.5.2-1build1) ... 744s Selecting previously unselected package r-cran-testthat. 744s Preparing to unpack .../145-r-cran-testthat_3.2.1-1_amd64.deb ... 744s Unpacking r-cran-testthat (3.2.1-1) ... 744s Selecting previously unselected package r-cran-nloptr. 744s Preparing to unpack .../146-r-cran-nloptr_2.0.3-1_amd64.deb ... 744s Unpacking r-cran-nloptr (2.0.3-1) ... 744s Selecting previously unselected package r-cran-rcppeigen. 744s Preparing to unpack .../147-r-cran-rcppeigen_0.3.3.9.4-1_amd64.deb ... 744s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 745s Selecting previously unselected package r-cran-statmod. 745s Preparing to unpack .../148-r-cran-statmod_1.5.0-1_amd64.deb ... 745s Unpacking r-cran-statmod (1.5.0-1) ... 745s Selecting previously unselected package r-cran-lme4. 745s Preparing to unpack .../149-r-cran-lme4_1.1-35.1-4_amd64.deb ... 745s Unpacking r-cran-lme4 (1.1-35.1-4) ... 745s Selecting previously unselected package r-cran-mlmrev. 745s Preparing to unpack .../150-r-cran-mlmrev_1.0-8-2build1_all.deb ... 745s Unpacking r-cran-mlmrev (1.0-8-2build1) ... 745s Setting up libgraphite2-3:amd64 (1.3.14-2) ... 745s Setting up libpixman-1-0:amd64 (0.42.2-1) ... 745s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ... 745s Setting up libpaper1:amd64 (1.1.29) ... 745s 745s Creating config file /etc/papersize with new version 745s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 745s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 745s Setting up libdatrie1:amd64 (0.2.13-3) ... 745s Setting up libxcb-render0:amd64 (1.15-1) ... 745s Setting up unzip (6.0-28ubuntu3) ... 745s Setting up x11-common (1:7.7+23ubuntu2) ... 745s Setting up libdeflate0:amd64 (1.19-1) ... 745s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 745s Setting up libnlopt0:amd64 (2.7.1-5build2) ... 745s Setting up libxcb-shm0:amd64 (1.15-1) ... 745s Setting up libpaper-utils (1.1.29) ... 745s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ... 745s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ... 745s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 745s Setting up zip (3.0-13) ... 745s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 745s Setting up libblas3:amd64 (3.12.0-3) ... 745s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 745s Setting up libpkgconf3:amd64 (1.8.1-2) ... 745s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 745s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ... 745s Setting up fonts-dejavu-mono (2.37-8) ... 745s Setting up libmpc3:amd64 (1.3.1-1) ... 745s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ... 745s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... 745s Setting up icu-devtools (74.2-1ubuntu1) ... 745s Setting up fonts-dejavu-core (2.37-8) ... 745s Setting up pkgconf-bin (1.8.1-2) ... 745s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 745s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 745s Setting up libwebp7:amd64 (1.3.2-0.4) ... 745s Setting up liblzma-dev:amd64 (5.4.5-0.3) ... 745s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ... 745s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 745s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 745s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 745s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 745s Setting up libharfbuzz0b:amd64 (8.3.0-2) ... 745s Setting up libthai-data (0.1.29-2) ... 745s Setting up libxss1:amd64 (1:1.2.3-1build2) ... 745s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ... 745s Setting up libisl23:amd64 (0.26-3) ... 745s Setting up libc-dev-bin (2.39-0ubuntu6) ... 745s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 745s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 745s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 745s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 745s Setting up libblas-dev:amd64 (3.12.0-3) ... 745s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 745s Setting up dctrl-tools (2.24-3build2) ... 745s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 745s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 745s Setting up libice6:amd64 (2:1.0.10-1build2) ... 745s Setting up liblapack3:amd64 (3.12.0-3) ... 745s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 745s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 745s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 746s Setting up pkgconf:amd64 (1.8.1-2) ... 746s Setting up libthai0:amd64 (0.1.29-2) ... 746s Setting up liblapack-dev:amd64 (3.12.0-3) ... 746s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 746s Setting up pkg-config:amd64 (1.8.1-2) ... 746s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 746s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 746s Setting up libc6-dev:amd64 (2.39-0ubuntu6) ... 746s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 746s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 746s Setting up libsm6:amd64 (2:1.2.3-1build2) ... 746s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ... 746s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 746s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 746s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 746s Setting up fontconfig (2.15.0-1ubuntu1) ... 748s Regenerating fonts cache... done. 748s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 748s Setting up libxft2:amd64 (2.3.6-1) ... 748s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 748s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ... 748s Setting up cpp-13 (13.2.0-17ubuntu2) ... 748s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 748s Setting up libtk8.6:amd64 (8.6.14-1) ... 748s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... 748s Setting up libreadline-dev:amd64 (8.2-3) ... 748s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 748s Setting up libcairo2:amd64 (1.18.0-1) ... 748s Setting up gcc-13 (13.2.0-17ubuntu2) ... 748s Setting up libxt6:amd64 (1:1.2.1-1.1) ... 748s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 748s Setting up cpp (4:13.2.0-7ubuntu1) ... 748s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 748s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 748s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 748s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 748s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 748s Setting up libpng-dev:amd64 (1.6.43-1) ... 748s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 748s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 748s Setting up gcc (4:13.2.0-7ubuntu1) ... 748s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 748s Setting up r-base-core (4.3.2-1build1) ... 748s 748s Creating config file /etc/R/Renviron with new version 748s Setting up r-cran-crayon (1.5.2-1) ... 748s Setting up r-cran-lattice (0.22-5-1) ... 748s Setting up r-cran-ps (1.7.6-1) ... 748s Setting up r-cran-nlme (3.1.164-1) ... 748s Setting up r-cran-statmod (1.5.0-1) ... 748s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 748s Setting up r-cran-r6 (2.5.1-1) ... 748s Setting up r-cran-pkgkitten (0.2.3-1) ... 748s Setting up r-cran-magrittr (2.0.3-1) ... 748s Setting up r-cran-littler (0.3.19-1) ... 748s Setting up r-cran-fs (1.6.3+dfsg-1) ... 748s Setting up r-cran-rcpp (1.0.12-1) ... 748s Setting up g++-13 (13.2.0-17ubuntu2) ... 748s Setting up r-cran-brio (1.1.4-1) ... 748s Setting up r-cran-boot (1.3-30-1) ... 748s Setting up r-cran-diffobj (0.3.5-1) ... 748s Setting up r-cran-rlang (1.1.3-1) ... 748s Setting up littler (0.3.19-1) ... 748s Setting up r-cran-withr (2.5.0-1) ... 748s Setting up r-cran-processx (3.8.3-1) ... 748s Setting up r-cran-praise (1.0.0-4build1) ... 748s Setting up r-cran-digest (0.6.34-1) ... 748s Setting up r-cran-evaluate (0.23-1) ... 748s Setting up r-cran-fansi (1.0.5-1) ... 748s Setting up r-cran-mass (7.3-60.0.1-1) ... 748s Setting up r-cran-glue (1.7.0-1) ... 748s Setting up r-cran-cli (3.6.2-1) ... 748s Setting up gfortran (4:13.2.0-7ubuntu1) ... 748s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 748s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 748s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 748s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 748s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 748s Setting up r-cran-rprojroot (2.0.4-1) ... 748s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 748s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 748s Setting up r-cran-utf8 (1.2.4-1) ... 748s Setting up r-cran-matrix (1.6-5-1) ... 748s Setting up g++ (4:13.2.0-7ubuntu1) ... 748s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 748s Setting up build-essential (12.10ubuntu1) ... 748s Setting up r-cran-vctrs (0.6.5-1) ... 748s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 748s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 748s Setting up r-cran-minqa (1.2.6-1) ... 748s Setting up r-base-dev (4.3.2-1build1) ... 748s Setting up r-cran-callr (3.7.3-2) ... 748s Setting up r-cran-desc (1.4.3-1) ... 748s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 748s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 748s Setting up r-cran-pkgbuild (1.4.3-1) ... 748s Setting up r-cran-pkgload (1.3.4-1) ... 748s Setting up r-cran-rematch2 (2.1.2-2build1) ... 748s Setting up r-cran-waldo (0.5.2-1build1) ... 748s Setting up r-cran-testthat (3.2.1-1) ... 748s Setting up r-cran-nloptr (2.0.3-1) ... 748s Setting up r-cran-lme4 (1.1-35.1-4) ... 748s Setting up r-cran-mlmrev (1.0-8-2build1) ... 748s Processing triggers for libc-bin (2.39-0ubuntu6) ... 748s Processing triggers for man-db (2.12.0-3) ... 750s Processing triggers for install-info (7.1-3) ... 750s Reading package lists... 751s Building dependency tree... 751s Reading state information... 751s Starting pkgProblemResolver with broken count: 0 751s Starting 2 pkgProblemResolver with broken count: 0 751s Done 751s The following NEW packages will be installed: 751s autopkgtest-satdep 751s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 751s Need to get 0 B/696 B of archives. 751s After this operation, 0 B of additional disk space will be used. 751s Get:1 /tmp/autopkgtest.UJ3h2w/4-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 752s Selecting previously unselected package autopkgtest-satdep. 752s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82622 files and directories currently installed.) 752s Preparing to unpack .../4-autopkgtest-satdep.deb ... 752s Unpacking autopkgtest-satdep (0) ... 752s Setting up autopkgtest-satdep (0) ... 753s (Reading database ... 82622 files and directories currently installed.) 753s Removing autopkgtest-satdep (0) ... 754s autopkgtest [07:09:59]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 754s autopkgtest [07:09:59]: test pkg-r-autopkgtest: [----------------------- 754s Test: Try to load the R library mlmRev 754s 754s R version 4.3.2 (2023-10-31) -- "Eye Holes" 754s Copyright (C) 2023 The R Foundation for Statistical Computing 754s Platform: x86_64-pc-linux-gnu (64-bit) 754s 754s R is free software and comes with ABSOLUTELY NO WARRANTY. 754s You are welcome to redistribute it under certain conditions. 754s Type 'license()' or 'licence()' for distribution details. 754s 754s R is a collaborative project with many contributors. 754s Type 'contributors()' for more information and 754s 'citation()' on how to cite R or R packages in publications. 754s 754s Type 'demo()' for some demos, 'help()' for on-line help, or 754s 'help.start()' for an HTML browser interface to help. 754s Type 'q()' to quit R. 754s 754s > library('mlmRev') 754s Loading required package: lme4 754s Loading required package: Matrix 755s > 755s > 756s Other tests are currently unsupported! 756s They will be progressively added. 756s autopkgtest [07:10:01]: test pkg-r-autopkgtest: -----------------------] 756s pkg-r-autopkgtest PASS 756s autopkgtest [07:10:01]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 756s autopkgtest [07:10:01]: @@@@@@@@@@@@@@@@@@@@ summary 756s run-unit-test PASS 756s pkg-r-autopkgtest PASS 772s Creating nova instance adt-noble-i386-r-cran-mlmrev-20240323-065724-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240323.img (UUID 5df8a563-0957-4fdd-8453-862df650aaf8)... 772s Creating nova instance adt-noble-i386-r-cran-mlmrev-20240323-065724-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240323.img (UUID 5df8a563-0957-4fdd-8453-862df650aaf8)...