0s autopkgtest [11:30:04]: starting date and time: 2024-03-22 11:30:04+0000 0s autopkgtest [11:30:04]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [11:30:04]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.mlqrnn0t/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-cran-fit.models --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-60.secgroup --name adt-noble-i386-r-cran-fit.models-20240322-113004-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 430s autopkgtest [11:37:14]: testbed dpkg architecture: amd64 430s autopkgtest [11:37:14]: testbed apt version: 2.7.12 430s autopkgtest [11:37:14]: test architecture: i386 430s autopkgtest [11:37:14]: @@@@@@@@@@@@@@@@@@@@ test bed setup 430s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 430s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [54.0 kB] 430s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 430s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 430s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3760 kB] 430s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [463 kB] 430s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [698 kB] 430s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 430s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 430s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 430s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 430s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1279 kB] 430s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4241 kB] 430s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 430s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 430s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 430s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 433s Fetched 11.3 MB in 1s (8095 kB/s) 434s Reading package lists... 435s Reading package lists... 435s Building dependency tree... 435s Reading state information... 436s Calculating upgrade... 436s The following packages will be upgraded: 436s cloud-init fonts-ubuntu-console python3-markupsafe 436s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 436s Need to get 629 kB of archives. 436s After this operation, 11.3 kB disk space will be freed. 436s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 436s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 436s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 436s Preconfiguring packages ... 436s Fetched 629 kB in 0s (24.0 MB/s) 436s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 436s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 436s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 436s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 436s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 436s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 437s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 437s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 437s Setting up cloud-init (24.1.2-0ubuntu1) ... 438s Setting up python3-markupsafe (2.1.5-1build1) ... 438s Processing triggers for man-db (2.12.0-3) ... 439s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 439s Reading package lists... 439s Building dependency tree... 439s Reading state information... 440s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 440s sh: Attempting to set up Debian/Ubuntu apt sources automatically 440s sh: Distribution appears to be Ubuntu 441s Reading package lists... 441s Building dependency tree... 441s Reading state information... 442s eatmydata is already the newest version (131-1). 442s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 442s Reading package lists... 442s Building dependency tree... 442s Reading state information... 442s dbus is already the newest version (1.14.10-4ubuntu1). 442s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 442s Reading package lists... 443s Building dependency tree... 443s Reading state information... 443s rng-tools-debian is already the newest version (2.4). 443s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 443s Reading package lists... 443s Building dependency tree... 443s Reading state information... 443s The following packages will be REMOVED: 443s cloud-init* python3-configobj* python3-debconf* 444s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 444s After this operation, 3256 kB disk space will be freed. 444s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 444s Removing cloud-init (24.1.2-0ubuntu1) ... 444s Removing python3-configobj (5.0.8-3) ... 444s Removing python3-debconf (1.5.86) ... 444s Processing triggers for man-db (2.12.0-3) ... 445s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 445s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 445s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 445s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 445s invoke-rc.d: policy-rc.d denied execution of try-restart. 445s Reading package lists... 446s Building dependency tree... 446s Reading state information... 446s linux-generic is already the newest version (6.8.0-11.11+1). 446s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 446s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 446s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 446s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 448s Reading package lists... 448s Reading package lists... 448s Building dependency tree... 448s Reading state information... 449s Calculating upgrade... 449s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 449s Reading package lists... 449s Building dependency tree... 449s Reading state information... 449s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 449s autopkgtest [11:37:33]: rebooting testbed after setup commands that affected boot 471s autopkgtest [11:37:55]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 472s autopkgtest [11:37:56]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-fit.models 473s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-fit.models 0.64-1 (dsc) [2144 B] 473s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-fit.models 0.64-1 (tar) [32.5 kB] 473s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-fit.models 0.64-1 (diff) [2324 B] 473s gpgv: Signature made Wed Sep 2 09:42:33 2020 UTC 473s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 473s gpgv: issuer "tille@debian.org" 473s gpgv: Can't check signature: No public key 473s dpkg-source: warning: cannot verify inline signature for ./r-cran-fit.models_0.64-1.dsc: no acceptable signature found 473s autopkgtest [11:37:57]: testing package r-cran-fit.models version 0.64-1 473s autopkgtest [11:37:57]: build not needed 475s autopkgtest [11:37:59]: test run-unit-test: preparing testbed 477s Note, using file '/tmp/autopkgtest.JbCE7a/1-autopkgtest-satdep.dsc' to get the build dependencies 477s Reading package lists... 478s Building dependency tree... 478s Reading state information... 478s Starting pkgProblemResolver with broken count: 0 478s Starting 2 pkgProblemResolver with broken count: 0 478s Done 478s The following NEW packages will be installed: 478s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 478s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++ g++-13 478s g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 478s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu libasan8 libatomic1 libblas3 478s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1 478s libdeflate0 libfontconfig1 libgcc-13-dev libgfortran5 libgomp1 478s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libisl23 libitm1 libjbig0 478s libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 liblsan0 libmpc3 libnsl-dev 478s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 478s libpaper1 libpixman-1-0 libquadmath0 libsharpyuv0 libsm6 libstdc++-13-dev 478s libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 478s libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 478s libxt6 linux-libc-dev r-base-core r-cran-fit.models r-cran-lattice 478s r-cran-mass rpcsvc-proto unzip x11-common xdg-utils zip 478s 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded. 478s Need to get 107 MB of archives. 478s After this operation, 325 MB of additional disk space will be used. 478s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 478s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 478s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 478s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 478s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 478s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 478s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 478s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 478s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 478s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 479s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 479s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 479s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 479s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 479s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 479s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 479s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 479s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 479s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 479s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 479s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 479s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 479s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 479s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 479s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 479s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 479s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 479s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 479s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 479s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 479s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 479s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 479s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 479s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 479s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 479s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 479s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 479s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 479s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 479s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 479s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 479s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 479s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 479s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 479s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 479s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 479s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 479s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 479s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 479s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 479s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 479s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 479s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 479s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 479s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 479s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 479s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 479s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 479s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 479s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 479s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 479s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 479s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 479s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 479s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 479s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 479s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 479s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 479s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 479s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 479s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 479s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 479s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 479s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 479s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 479s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 479s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 479s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 479s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fit.models all 0.64-1 [144 kB] 479s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 480s Preconfiguring packages ... 480s Fetched 107 MB in 1s (121 MB/s) 480s Selecting previously unselected package libc-dev-bin. 480s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 480s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 480s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 480s Selecting previously unselected package linux-libc-dev:amd64. 480s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_amd64.deb ... 480s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 480s Selecting previously unselected package libcrypt-dev:amd64. 480s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 480s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 480s Selecting previously unselected package libtirpc-dev:amd64. 480s Preparing to unpack .../03-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 480s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 480s Selecting previously unselected package libnsl-dev:amd64. 480s Preparing to unpack .../04-libnsl-dev_1.3.0-3_amd64.deb ... 480s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 480s Selecting previously unselected package rpcsvc-proto. 480s Preparing to unpack .../05-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 480s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 480s Selecting previously unselected package libc6-dev:amd64. 480s Preparing to unpack .../06-libc6-dev_2.39-0ubuntu2_amd64.deb ... 480s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 480s Selecting previously unselected package libisl23:amd64. 480s Preparing to unpack .../07-libisl23_0.26-3_amd64.deb ... 480s Unpacking libisl23:amd64 (0.26-3) ... 480s Selecting previously unselected package libmpc3:amd64. 480s Preparing to unpack .../08-libmpc3_1.3.1-1_amd64.deb ... 480s Unpacking libmpc3:amd64 (1.3.1-1) ... 480s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 480s Preparing to unpack .../09-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 480s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 481s Selecting previously unselected package cpp-13. 481s Preparing to unpack .../10-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 481s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 481s Selecting previously unselected package cpp-x86-64-linux-gnu. 481s Preparing to unpack .../11-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 481s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 481s Selecting previously unselected package cpp. 481s Preparing to unpack .../12-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 481s Unpacking cpp (4:13.2.0-7ubuntu1) ... 481s Selecting previously unselected package libcc1-0:amd64. 481s Preparing to unpack .../13-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 481s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 481s Selecting previously unselected package libgomp1:amd64. 481s Preparing to unpack .../14-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 481s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 481s Selecting previously unselected package libitm1:amd64. 481s Preparing to unpack .../15-libitm1_14-20240303-1ubuntu1_amd64.deb ... 481s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 481s Selecting previously unselected package libatomic1:amd64. 481s Preparing to unpack .../16-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 481s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 481s Selecting previously unselected package libasan8:amd64. 481s Preparing to unpack .../17-libasan8_14-20240303-1ubuntu1_amd64.deb ... 481s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 481s Selecting previously unselected package liblsan0:amd64. 481s Preparing to unpack .../18-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 481s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 481s Selecting previously unselected package libtsan2:amd64. 481s Preparing to unpack .../19-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 481s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 481s Selecting previously unselected package libubsan1:amd64. 481s Preparing to unpack .../20-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 481s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 481s Selecting previously unselected package libhwasan0:amd64. 481s Preparing to unpack .../21-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 481s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 481s Selecting previously unselected package libquadmath0:amd64. 481s Preparing to unpack .../22-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 481s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 481s Selecting previously unselected package libgcc-13-dev:amd64. 481s Preparing to unpack .../23-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 481s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 481s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 481s Preparing to unpack .../24-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 481s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 482s Selecting previously unselected package gcc-13. 482s Preparing to unpack .../25-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 482s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 482s Selecting previously unselected package gcc-x86-64-linux-gnu. 482s Preparing to unpack .../26-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 482s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 482s Selecting previously unselected package gcc. 482s Preparing to unpack .../27-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 482s Unpacking gcc (4:13.2.0-7ubuntu1) ... 482s Selecting previously unselected package libstdc++-13-dev:amd64. 482s Preparing to unpack .../28-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 482s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 482s Selecting previously unselected package g++-13-x86-64-linux-gnu. 482s Preparing to unpack .../29-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 482s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 482s Selecting previously unselected package g++-13. 482s Preparing to unpack .../30-g++-13_13.2.0-17ubuntu2_amd64.deb ... 482s Unpacking g++-13 (13.2.0-17ubuntu2) ... 482s Selecting previously unselected package g++-x86-64-linux-gnu. 482s Preparing to unpack .../31-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 482s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 482s Selecting previously unselected package g++. 482s Preparing to unpack .../32-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 482s Unpacking g++ (4:13.2.0-7ubuntu1) ... 482s Selecting previously unselected package build-essential. 482s Preparing to unpack .../33-build-essential_12.10ubuntu1_amd64.deb ... 482s Unpacking build-essential (12.10ubuntu1) ... 482s Selecting previously unselected package fonts-dejavu-mono. 482s Preparing to unpack .../34-fonts-dejavu-mono_2.37-8_all.deb ... 482s Unpacking fonts-dejavu-mono (2.37-8) ... 482s Selecting previously unselected package fonts-dejavu-core. 482s Preparing to unpack .../35-fonts-dejavu-core_2.37-8_all.deb ... 482s Unpacking fonts-dejavu-core (2.37-8) ... 482s Selecting previously unselected package fontconfig-config. 482s Preparing to unpack .../36-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 483s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 483s Selecting previously unselected package libfontconfig1:amd64. 483s Preparing to unpack .../37-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 483s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 483s Selecting previously unselected package fontconfig. 483s Preparing to unpack .../38-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 483s Unpacking fontconfig (2.15.0-1ubuntu1) ... 483s Selecting previously unselected package libblas3:amd64. 483s Preparing to unpack .../39-libblas3_3.12.0-3_amd64.deb ... 483s Unpacking libblas3:amd64 (3.12.0-3) ... 483s Selecting previously unselected package libpixman-1-0:amd64. 483s Preparing to unpack .../40-libpixman-1-0_0.42.2-1_amd64.deb ... 483s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 483s Selecting previously unselected package libxcb-render0:amd64. 483s Preparing to unpack .../41-libxcb-render0_1.15-1_amd64.deb ... 483s Unpacking libxcb-render0:amd64 (1.15-1) ... 483s Selecting previously unselected package libxcb-shm0:amd64. 483s Preparing to unpack .../42-libxcb-shm0_1.15-1_amd64.deb ... 483s Unpacking libxcb-shm0:amd64 (1.15-1) ... 483s Selecting previously unselected package libxrender1:amd64. 483s Preparing to unpack .../43-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 483s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 483s Selecting previously unselected package libcairo2:amd64. 483s Preparing to unpack .../44-libcairo2_1.18.0-1_amd64.deb ... 483s Unpacking libcairo2:amd64 (1.18.0-1) ... 483s Selecting previously unselected package libdatrie1:amd64. 483s Preparing to unpack .../45-libdatrie1_0.2.13-3_amd64.deb ... 483s Unpacking libdatrie1:amd64 (0.2.13-3) ... 483s Selecting previously unselected package libdeflate0:amd64. 483s Preparing to unpack .../46-libdeflate0_1.19-1_amd64.deb ... 483s Unpacking libdeflate0:amd64 (1.19-1) ... 483s Selecting previously unselected package libgfortran5:amd64. 483s Preparing to unpack .../47-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 483s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 483s Selecting previously unselected package libgraphite2-3:amd64. 483s Preparing to unpack .../48-libgraphite2-3_1.3.14-2_amd64.deb ... 483s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 483s Selecting previously unselected package libharfbuzz0b:amd64. 483s Preparing to unpack .../49-libharfbuzz0b_8.3.0-2_amd64.deb ... 483s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 483s Selecting previously unselected package x11-common. 483s Preparing to unpack .../50-x11-common_1%3a7.7+23ubuntu2_all.deb ... 483s Unpacking x11-common (1:7.7+23ubuntu2) ... 483s Selecting previously unselected package libice6:amd64. 483s Preparing to unpack .../51-libice6_2%3a1.0.10-1build2_amd64.deb ... 483s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 483s Selecting previously unselected package libjpeg-turbo8:amd64. 483s Preparing to unpack .../52-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 483s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 483s Selecting previously unselected package libjpeg8:amd64. 483s Preparing to unpack .../53-libjpeg8_8c-2ubuntu11_amd64.deb ... 483s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 483s Selecting previously unselected package liblapack3:amd64. 483s Preparing to unpack .../54-liblapack3_3.12.0-3_amd64.deb ... 483s Unpacking liblapack3:amd64 (3.12.0-3) ... 483s Selecting previously unselected package liblerc4:amd64. 483s Preparing to unpack .../55-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 483s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 483s Selecting previously unselected package libthai-data. 483s Preparing to unpack .../56-libthai-data_0.1.29-2_all.deb ... 483s Unpacking libthai-data (0.1.29-2) ... 483s Selecting previously unselected package libthai0:amd64. 483s Preparing to unpack .../57-libthai0_0.1.29-2_amd64.deb ... 483s Unpacking libthai0:amd64 (0.1.29-2) ... 483s Selecting previously unselected package libpango-1.0-0:amd64. 483s Preparing to unpack .../58-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 483s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 483s Selecting previously unselected package libpangoft2-1.0-0:amd64. 483s Preparing to unpack .../59-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 483s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 483s Selecting previously unselected package libpangocairo-1.0-0:amd64. 483s Preparing to unpack .../60-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 483s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 483s Selecting previously unselected package libpaper1:amd64. 483s Preparing to unpack .../61-libpaper1_1.1.29_amd64.deb ... 483s Unpacking libpaper1:amd64 (1.1.29) ... 484s Selecting previously unselected package libpaper-utils. 484s Preparing to unpack .../62-libpaper-utils_1.1.29_amd64.deb ... 484s Unpacking libpaper-utils (1.1.29) ... 484s Selecting previously unselected package libsharpyuv0:amd64. 484s Preparing to unpack .../63-libsharpyuv0_1.3.2-0.4_amd64.deb ... 484s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 484s Selecting previously unselected package libsm6:amd64. 484s Preparing to unpack .../64-libsm6_2%3a1.2.3-1build2_amd64.deb ... 484s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 484s Selecting previously unselected package libtcl8.6:amd64. 484s Preparing to unpack .../65-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 484s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 484s Selecting previously unselected package libjbig0:amd64. 484s Preparing to unpack .../66-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 484s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 484s Selecting previously unselected package libwebp7:amd64. 484s Preparing to unpack .../67-libwebp7_1.3.2-0.4_amd64.deb ... 484s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 484s Selecting previously unselected package libtiff6:amd64. 484s Preparing to unpack .../68-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 484s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 484s Selecting previously unselected package libxft2:amd64. 484s Preparing to unpack .../69-libxft2_2.3.6-1_amd64.deb ... 484s Unpacking libxft2:amd64 (2.3.6-1) ... 484s Selecting previously unselected package libxss1:amd64. 484s Preparing to unpack .../70-libxss1_1%3a1.2.3-1build2_amd64.deb ... 484s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 484s Selecting previously unselected package libtk8.6:amd64. 484s Preparing to unpack .../71-libtk8.6_8.6.13-2_amd64.deb ... 484s Unpacking libtk8.6:amd64 (8.6.13-2) ... 484s Selecting previously unselected package libxt6:amd64. 484s Preparing to unpack .../72-libxt6_1%3a1.2.1-1.1_amd64.deb ... 484s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 484s Selecting previously unselected package zip. 484s Preparing to unpack .../73-zip_3.0-13_amd64.deb ... 484s Unpacking zip (3.0-13) ... 484s Selecting previously unselected package unzip. 484s Preparing to unpack .../74-unzip_6.0-28ubuntu3_amd64.deb ... 484s Unpacking unzip (6.0-28ubuntu3) ... 484s Selecting previously unselected package xdg-utils. 484s Preparing to unpack .../75-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 484s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 484s Selecting previously unselected package r-base-core. 484s Preparing to unpack .../76-r-base-core_4.3.2-1build1_amd64.deb ... 484s Unpacking r-base-core (4.3.2-1build1) ... 484s Selecting previously unselected package r-cran-lattice. 484s Preparing to unpack .../77-r-cran-lattice_0.22-5-1_amd64.deb ... 484s Unpacking r-cran-lattice (0.22-5-1) ... 484s Selecting previously unselected package r-cran-fit.models. 484s Preparing to unpack .../78-r-cran-fit.models_0.64-1_all.deb ... 484s Unpacking r-cran-fit.models (0.64-1) ... 484s Selecting previously unselected package r-cran-mass. 485s Preparing to unpack .../79-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 485s Unpacking r-cran-mass (7.3-60.0.1-1) ... 485s Setting up libgraphite2-3:amd64 (1.3.14-2) ... 485s Setting up libpixman-1-0:amd64 (0.42.2-1) ... 485s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ... 485s Setting up libpaper1:amd64 (1.1.29) ... 485s 485s Creating config file /etc/papersize with new version 485s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 485s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 485s Setting up libdatrie1:amd64 (0.2.13-3) ... 485s Setting up libxcb-render0:amd64 (1.15-1) ... 485s Setting up unzip (6.0-28ubuntu3) ... 485s Setting up x11-common (1:7.7+23ubuntu2) ... 485s Setting up libdeflate0:amd64 (1.19-1) ... 485s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 485s Setting up libxcb-shm0:amd64 (1.15-1) ... 485s Setting up libpaper-utils (1.1.29) ... 485s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ... 485s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ... 485s Setting up zip (3.0-13) ... 485s Setting up libblas3:amd64 (3.12.0-3) ... 485s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 485s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 485s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 485s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ... 485s Setting up fonts-dejavu-mono (2.37-8) ... 485s Setting up libmpc3:amd64 (1.3.1-1) ... 485s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ... 485s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... 485s Setting up fonts-dejavu-core (2.37-8) ... 485s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 485s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 485s Setting up libwebp7:amd64 (1.3.2-0.4) ... 485s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ... 485s Setting up libnsl-dev:amd64 (1.3.0-3) ... 485s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 485s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 485s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 485s Setting up libharfbuzz0b:amd64 (8.3.0-2) ... 485s Setting up libthai-data (0.1.29-2) ... 485s Setting up libxss1:amd64 (1:1.2.3-1build2) ... 485s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ... 485s Setting up libisl23:amd64 (0.26-3) ... 485s Setting up libc-dev-bin (2.39-0ubuntu2) ... 485s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 485s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 485s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 485s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 485s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 485s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 485s Setting up libice6:amd64 (2:1.0.10-1build2) ... 485s Setting up liblapack3:amd64 (3.12.0-3) ... 485s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 485s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 485s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 485s Setting up libthai0:amd64 (0.1.29-2) ... 485s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 485s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 485s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ... 485s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 485s Setting up libsm6:amd64 (2:1.2.3-1build2) ... 485s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 485s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 485s Setting up fontconfig (2.15.0-1ubuntu1) ... 487s Regenerating fonts cache... done. 487s Setting up libxft2:amd64 (2.3.6-1) ... 487s Setting up cpp-13 (13.2.0-17ubuntu2) ... 487s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 487s Setting up libtk8.6:amd64 (8.6.13-2) ... 487s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... 487s Setting up libcairo2:amd64 (1.18.0-1) ... 487s Setting up gcc-13 (13.2.0-17ubuntu2) ... 487s Setting up libxt6:amd64 (1:1.2.1-1.1) ... 487s Setting up cpp (4:13.2.0-7ubuntu1) ... 487s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 487s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 487s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 487s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 487s Setting up gcc (4:13.2.0-7ubuntu1) ... 488s Setting up r-base-core (4.3.2-1build1) ... 488s 488s Creating config file /etc/R/Renviron with new version 488s Setting up r-cran-lattice (0.22-5-1) ... 488s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 488s Setting up r-cran-fit.models (0.64-1) ... 488s Setting up g++-13 (13.2.0-17ubuntu2) ... 488s Setting up r-cran-mass (7.3-60.0.1-1) ... 488s Setting up g++ (4:13.2.0-7ubuntu1) ... 488s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 488s Setting up build-essential (12.10ubuntu1) ... 488s Processing triggers for libc-bin (2.39-0ubuntu2) ... 488s Processing triggers for man-db (2.12.0-3) ... 489s Processing triggers for install-info (7.1-3) ... 491s Reading package lists... 492s Building dependency tree... 492s Reading state information... 492s Starting pkgProblemResolver with broken count: 0 492s Starting 2 pkgProblemResolver with broken count: 0 492s Done 493s The following NEW packages will be installed: 493s autopkgtest-satdep 493s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 493s Need to get 0 B/696 B of archives. 493s After this operation, 0 B of additional disk space will be used. 493s Get:1 /tmp/autopkgtest.JbCE7a/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 493s Selecting previously unselected package autopkgtest-satdep. 493s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76605 files and directories currently installed.) 493s Preparing to unpack .../2-autopkgtest-satdep.deb ... 493s Unpacking autopkgtest-satdep (0) ... 493s Setting up autopkgtest-satdep (0) ... 494s (Reading database ... 76605 files and directories currently installed.) 494s Removing autopkgtest-satdep (0) ... 495s autopkgtest [11:38:19]: test run-unit-test: [----------------------- 495s BEGIN TEST glmfm.R 495s 495s R version 4.3.2 (2023-10-31) -- "Eye Holes" 495s Copyright (C) 2023 The R Foundation for Statistical Computing 495s Platform: x86_64-pc-linux-gnu (64-bit) 495s 495s R is free software and comes with ABSOLUTELY NO WARRANTY. 495s You are welcome to redistribute it under certain conditions. 495s Type 'license()' or 'licence()' for distribution details. 495s 495s R is a collaborative project with many contributors. 495s Type 'contributors()' for more information and 495s 'citation()' on how to cite R or R packages in publications. 495s 495s Type 'demo()' for some demos, 'help()' for on-line help, or 495s 'help.start()' for an HTML browser interface to help. 495s Type 'q()' to quit R. 495s 495s > options(warn = 2) 495s > 495s > library(fit.models) 495s > library(MASS) 495s > 495s > ################################################################################ 495s > # Test models with differenct formulas 495s > ################################################################################ 495s > 495s > counts <- c(18, 17, 15, 20, 10, 20, 25, 13, 12) 495s > outcome <- gl(3, 1, 9) 495s > treatment <- c(gl(3,2), gl(3,1)) 495s > d.AD <- data.frame(treatment, outcome, counts) 495s > 495s > trt <- glm(counts ~ treatment, family = poisson()) 495s > out <- glm(counts ~ outcome, family = poisson()) 495s > 495s > fm1 <- fit.models(trt, out) 495s > print(fm1) 495s 495s Calls: 495s trt: glm(formula = counts ~ treatment, family = poisson()) 495s out: glm(formula = counts ~ outcome, family = poisson()) 495s 495s Coefficients: 495s (Intercept) treatment2 treatment3 outcome2 outcome3 495s trt 2.9957 -0.2231 -0.3567 495s out 3.0445 -0.4543 -0.293 495s 495s > print(fm1.sum <- summary(fm1, correlation = TRUE)) 495s 495s Calls: 495s trt: glm(formula = counts ~ treatment, family = poisson()) 495s out: glm(formula = counts ~ outcome, family = poisson()) 495s 495s Deviance Residuals: 495s Min 1Q Median 3Q Max 495s trt: -1.1272 -0.6887 -0.4550 0.9622 1.506 495s out: -0.9666 -0.6712 -0.1696 0.8472 1.049 495s 495s Coefficients: 495s Estimate Std. Error z value Pr(>|z|) 495s (Intercept): trt: 2.9957 0.1291 23.205 <2e-16 *** 495s out: 3.0445 0.1260 24.165 <2e-16 *** 495s 495s treatment2: trt: -0.2231 0.1936 -1.152 0.2492 495s out: 495s 495s treatment3: trt: -0.3567 0.2012 -1.773 0.0763 . 495s out: 495s 495s outcome2: trt: 495s out: -0.4543 0.2022 -2.247 0.0246 * 495s 495s outcome3: trt: 495s out: -0.2930 0.1927 -1.520 0.1285 495s --- 495s Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 495s 495s Null deviance: 495s trt: 10.58 on 8 degrees of freedom 495s out: 10.58 on 8 degrees of freedom 495s 495s Residual deviance: 495s trt: 7.267 on 6 degrees of freedom 495s out: 5.129 on 6 degrees of freedom 495s 495s Correlations: 495s trt: 495s (Intercept) treatment2 495s treatment2 -0.67 495s treatment3 -0.64 0.43 495s 495s out: 495s (Intercept) outcome2 495s outcome2 -0.62 495s outcome3 -0.65 0.41 495s 495s > 495s > pdf("fm1.pdf") 495s > plot(fm1, 1) 495s > plot(fm1, 2) 495s > plot(fm1, 3) 495s > plot(fm1, 4) 495s > plot(fm1, 5) 495s > plot(fm1, 6) 495s > dev.off() 495s null device 495s 1 495s > 495s > rm(fm1, fm1.sum) 495s > file.remove("fm1.pdf") 495s [1] TRUE 495s > 495s > 495s > ################################################################################ 495s > # Test models with different formulas 495s > ################################################################################ 495s > 495s > 495s > ## an example with offsets from Venables & Ripley (2002, p.189) 495s > utils::data(anorexia, package = "MASS") 495s > 495s > offset <- glm(Postwt ~ Prewt + Treat + offset(Prewt), family = gaussian, 495s + data = anorexia) 495s > 495s > no.offset <- glm(Postwt - Prewt ~ Treat, family = gaussian, data = anorexia) 495s > 495s > fm2 <- fit.models(offset, no.offset) 495s > print(fm2) 495s 495s Calls: 495s offset: glm(formula = Postwt ~ Prewt + Treat + offset(Prewt), family = gaussian, 495s data = anorexia) 495s no.offset: glm(formula = Postwt - Prewt ~ Treat, family = gaussian, data = anorexia) 495s 495s Coefficients: 495s (Intercept) Prewt TreatCont TreatFT 495s offset 49.7711 -0.5655 -4.0971 4.563 495s no.offset 3.0069 -3.4569 4.258 495s 495s > print(fm2.sum <- summary(fm2, correlation = TRUE)) 495s 495s Calls: 495s offset: glm(formula = Postwt ~ Prewt + Treat + offset(Prewt), family = gaussian, 495s data = anorexia) 495s no.offset: glm(formula = Postwt - Prewt ~ Treat, family = gaussian, data = anorexia) 495s 495s Deviance Residuals: 495s Min 1Q Median 3Q Max 495s offset: -14.11 -4.277 -0.5484 5.484 15.29 495s no.offset: -12.56 -4.543 -1.0069 3.846 17.89 495s 495s Coefficients: 495s Estimate Std. Error z value Pr(>|z|) 495s (Intercept): offset: 49.7711 13.3910 3.717 0.000410 *** 495s no.offset: 3.0069 1.3980 2.151 0.034992 * 495s 495s Prewt: offset: -0.5655 0.1612 -3.509 0.000803 *** 495s no.offset: 495s 495s TreatCont: offset: -4.0971 1.8935 -2.164 0.033999 * 495s no.offset: -3.4569 2.0333 -1.700 0.093608 . 495s 495s TreatFT: offset: 4.5631 2.1333 2.139 0.036035 * 495s no.offset: 4.2578 2.2996 1.852 0.068376 . 495s --- 495s Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 495s 495s Null deviance: 495s offset: 4525 on 71 degrees of freedom 495s no.offset: 4525 on 71 degrees of freedom 495s 495s Residual deviance: 495s offset: 3311 on 68 degrees of freedom 495s no.offset: 3911 on 69 degrees of freedom 495s 495s Correlations: 495s offset: 495s (Intercept) Prewt TreatCont 495s Prewt -1.00 495s TreatCont -0.16 0.10 495s TreatFT -0.02 -0.04 0.41 495s 495s no.offset: 495s (Intercept) TreatCont 495s TreatCont -0.69 495s TreatFT -0.61 0.42 495s 495s > 495s > pdf("fm2.pdf") 495s > plot(fm2, 1) 495s > plot(fm2, 2) 495s > plot(fm2, 3) 495s > plot(fm2, 4) 495s > plot(fm2, 5) 495s > plot(fm2, 6) 495s > dev.off() 495s null device 495s 1 495s > 495s > rm(fm2, fm2.sum) 495s > file.remove("fm2.pdf") 495s [1] TRUE 495s > 495s > 495s > ################################################################################ 495s > # Test models with different formulas and subsets 495s > ################################################################################ 495s > 495s > m1 <- glm(Postwt ~ Prewt + Treat, family = gaussian, 495s + data = subset(anorexia, Prewt > 75)) 495s > 495s > m2 <- glm(Postwt ~ Treat, family = gaussian, data = anorexia) 495s > 495s > fm3 <- fit.models(m1, m2) 495s > print(fm3) 495s 495s Calls: 495s m1: glm(formula = Postwt ~ Prewt + Treat, family = gaussian, data = subset(anorexia, 495s Prewt > 75)) 495s m2: glm(formula = Postwt ~ Treat, family = gaussian, data = anorexia) 495s 495s Coefficients: 495s (Intercept) Prewt TreatCont TreatFT 495s m1 18.2207 0.8093 -4.6651 4.141 495s m2 85.6966 -4.5889 4.798 495s 495s > print(fm3.sum <- summary(fm3, correlation = TRUE)) 495s 495s Calls: 495s m1: glm(formula = Postwt ~ Prewt + Treat, family = gaussian, data = subset(anorexia, 495s Prewt > 75)) 495s m2: glm(formula = Postwt ~ Treat, family = gaussian, data = anorexia) 495s 495s Deviance Residuals: 495s Min 1Q Median 3Q Max 495s m1: -12.31 -4.747 -0.463868 4.579 13.59 495s m2: -15.29 -3.730 -0.002122 4.781 17.90 495s 495s Coefficients: 495s Estimate Std. Error z value Pr(>|z|) 495s (Intercept): m1: 18.2207 15.0442 1.211 0.2304 495s m2: 85.6966 1.3534 63.321 < 2e-16 *** 495s 495s Prewt: m1: 0.8093 0.1803 4.488 3.12e-05 *** 495s m2: 495s 495s TreatCont: m1: -4.6651 1.8353 -2.542 0.0135 * 495s m2: -4.5889 1.9684 -2.331 0.0227 * 495s 495s TreatFT: m1: 4.1408 2.0463 2.024 0.0473 * 495s m2: 4.7976 2.2262 2.155 0.0347 * 495s --- 495s Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 495s 495s Null deviance: 495s m1: 4431 on 66 degrees of freedom 495s m2: 4584 on 71 degrees of freedom 495s 495s Residual deviance: 495s m1: 2676 on 63 degrees of freedom 495s m2: 3665 on 69 degrees of freedom 495s 495s Correlations: 495s m1: 495s (Intercept) Prewt TreatCont 495s Prewt -1.00 495s TreatCont -0.09 0.04 495s TreatFT 0.01 -0.06 0.40 495s 495s m2: 495s (Intercept) TreatCont 495s TreatCont -0.69 495s TreatFT -0.61 0.42 495s 495s > 495s > pdf("fm3.pdf") 495s > plot(fm3, 1) 495s > plot(fm3, 2) 495s > plot(fm3, 3) 496s > plot(fm3, 4) 496s > plot(fm3, 5) 496s > plot(fm3, 6) 496s > dev.off() 496s null device 496s 1 496s > 496s > rm(fm3, fm3.sum) 496s > file.remove("fm3.pdf") 496s [1] TRUE 496s > 496s > 496s > ################################################################################ 496s > 496s > 496s > 496s BEGIN TEST lmfm.R 496s 496s R version 4.3.2 (2023-10-31) -- "Eye Holes" 496s Copyright (C) 2023 The R Foundation for Statistical Computing 496s Platform: x86_64-pc-linux-gnu (64-bit) 496s 496s R is free software and comes with ABSOLUTELY NO WARRANTY. 496s You are welcome to redistribute it under certain conditions. 496s Type 'license()' or 'licence()' for distribution details. 496s 496s R is a collaborative project with many contributors. 496s Type 'contributors()' for more information and 496s 'citation()' on how to cite R or R packages in publications. 496s 496s Type 'demo()' for some demos, 'help()' for on-line help, or 496s 'help.start()' for an HTML browser interface to help. 496s Type 'q()' to quit R. 496s 496s > options(warn = 2) 496s > 496s > data(stackloss) 496s > 496s > library(fit.models) 496s > library(MASS) 496s > 496s > # add rlm to the lmfm fit.models class 496s > fmclass.add.class("lmfm", "rlm") 496s > 496s > ################################################################################ 496s > # Test original syntax 496s > ################################################################################ 496s > 496s > fm1 <- fit.models(list(Robust = "rlm", LS = "lm"), stack.loss ~ ., data = stackloss) 496s rlm is already registered in the fit.models registry 496s > print(fm1) 496s 496s Calls: 496s Robust: rlm(formula = stack.loss ~ ., data = stackloss) 496s LS: lm(formula = stack.loss ~ ., data = stackloss) 496s 496s Coefficients: 496s (Intercept) Air.Flow Water.Temp Acid.Conc. 496s Robust -41.0265 0.8294 0.9261 -0.128 496s LS -39.9197 0.7156 1.2953 -0.152 496s 496s > print(fm1.sum <- summary(fm1, correlation = TRUE)) 496s 496s Calls: 496s Robust: rlm(formula = stack.loss ~ ., data = stackloss) 496s LS: lm(formula = stack.loss ~ ., data = stackloss) 496s 496s Residual Statistics: 496s Min 1Q Median 3Q Max 496s Robust: -8.918 -1.731 0.06187 1.543 6.502 496s LS: -7.238 -1.712 -0.45509 2.361 5.698 496s 496s Coefficients: 496s Estimate Std. Error t value Pr(>|t|) 496s (Intercept): Robust: -41.0265 9.8073 -4.183 496s LS: -39.9197 11.8960 -3.356 0.00375 ** 496s 496s Air.Flow: Robust: 0.8294 0.1112 7.460 496s LS: 0.7156 0.1349 5.307 5.8e-05 *** 496s 496s Water.Temp: Robust: 0.9261 0.3034 3.052 496s LS: 1.2953 0.3680 3.520 0.00263 ** 496s 496s Acid.Conc.: Robust: -0.1278 0.1289 -0.992 496s LS: -0.1521 0.1563 -0.973 0.34405 496s --- 496s Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 496s 496s Residual Scale Estimates: 496s Robust: 2.441 on 17 degrees of freedom 496s LS: 3.243 on 17 degrees of freedom 496s 496s Multiple R-squared: 496s LS: 0.9136 496s 496s Correlations: 496s Robust: 496s (Intercept) Air.Flow Water.Temp 496s Air.Flow 0.18 496s Water.Temp -0.15 -0.74 496s Acid.Conc. -0.90 -0.34 0.00 496s 496s LS: 496s (Intercept) Air.Flow Water.Temp 496s Air.Flow 0.18 496s Water.Temp -0.15 -0.74 496s Acid.Conc. -0.90 -0.34 0.00 496s 496s > 496s > pdf("fm1.pdf") 496s > plot(fm1, 1) 496s > plot(fm1, 2) 496s > plot(fm1, 3) 496s > plot(fm1, 4) 496s > plot(fm1, 5) 496s > plot(fm1, 6) 496s > plot(fm1, 7) 496s > plot(fm1, 8) 496s > plot(fm1, 9) 496s > dev.off() 496s null device 496s 1 496s > 496s > rm(fm1, fm1.sum) 496s > file.remove("fm1.pdf") 496s [1] TRUE 496s > 496s > 496s > ################################################################################ 496s > # Test models with different subsets 496s > ################################################################################ 496s > 496s > complete <- lm(stack.loss ~ ., data = stackloss) 496s > clean <- lm(stack.loss ~ ., data = stackloss, subset = -c(1, 2, 4, 21)) 496s > fm2 <- fit.models(Clean = clean, Complete = complete) 496s > print(fm2) 496s 496s Calls: 496s Clean: lm(formula = stack.loss ~ ., data = stackloss, subset = -c(1, 496s 2, 4, 21)) 496s Complete: lm(formula = stack.loss ~ ., data = stackloss) 496s 496s Coefficients: 496s (Intercept) Air.Flow Water.Temp Acid.Conc. 496s Clean -42.0003 0.9555 0.5556 -0.113 496s Complete -39.9197 0.7156 1.2953 -0.152 496s 496s > print(fm2.sum <- summary(fm2, correlation = TRUE)) 496s 496s Calls: 496s Clean: lm(formula = stack.loss ~ ., data = stackloss, subset = -c(1, 496s 2, 4, 21)) 496s Complete: lm(formula = stack.loss ~ ., data = stackloss) 496s 496s Residual Statistics: 496s Min 1Q Median 3Q Max 496s Clean: -3.122 -1.333 -0.03041 0.9755 3.652 496s Complete: -7.238 -1.712 -0.45509 2.3614 5.698 496s 496s Coefficients: 496s Estimate Std. Error t value Pr(>|t|) 496s (Intercept): Clean: -42.00028 7.08242 -5.930 4.98e-05 *** 496s Complete: -39.91967 11.89600 -3.356 0.00375 ** 496s 496s Air.Flow: Clean: 0.95550 0.11018 8.672 9.15e-07 *** 496s Complete: 0.71564 0.13486 5.307 5.80e-05 *** 496s 496s Water.Temp: Clean: 0.55561 0.25128 2.211 0.04556 * 496s Complete: 1.29529 0.36802 3.520 0.00263 ** 496s 496s Acid.Conc.: Clean: -0.11339 0.09821 -1.155 0.26904 496s Complete: -0.15212 0.15629 -0.973 0.34405 496s --- 496s Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 496s 496s Residual Scale Estimates: 496s Clean: 1.896 on 13 degrees of freedom 496s Complete: 3.243 on 17 degrees of freedom 496s 496s Multiple R-squared: 496s Clean: 0.9428 496s Complete: 0.9136 496s 496s Correlations: 496s Clean: 496s (Intercept) Air.Flow Water.Temp 496s Air.Flow 0.01 496s Water.Temp -0.10 -0.61 496s Acid.Conc. -0.79 -0.40 -0.07 496s 496s Complete: 496s (Intercept) Air.Flow Water.Temp 496s Air.Flow 0.18 496s Water.Temp -0.15 -0.74 496s Acid.Conc. -0.90 -0.34 0.00 496s 496s > 496s > pdf("fm2.pdf") 496s > plot(fm2, 1) 496s > plot(fm2, 2) 496s > plot(fm2, 3) 497s > plot(fm2, 4) 497s > plot(fm2, 5) 497s > plot(fm2, 6) 497s > plot(fm2, 7) 497s > plot(fm2, 8) 497s > plot(fm2, 9) 497s > dev.off() 497s null device 497s 1 497s > 497s > rm(fm2, fm2.sum) 497s > file.remove("fm2.pdf") 497s [1] TRUE 497s > 497s > 497s > ################################################################################ 497s > # Test models with different formulas 497s > ################################################################################ 497s > 497s > m1 <- lm(stack.loss ~ Air.Flow + Water.Temp, data = stackloss) 497s > m2 <- lm(stack.loss ~ Water.Temp + Acid.Conc., data = stackloss) 497s > fm3 <- fit.models(m1, m2) 497s > print(fm3) 497s 497s Calls: 497s m1: lm(formula = stack.loss ~ Air.Flow + Water.Temp, data = stackloss) 497s m2: lm(formula = stack.loss ~ Water.Temp + Acid.Conc., data = stackloss) 497s 497s Coefficients: 497s (Intercept) Air.Flow Water.Temp Acid.Conc. 497s m1 -50.3588 0.6712 1.2954 497s m2 -51.2361 2.7320 0.129 497s 497s > print(fm3.sum <- summary(fm3, correlation = TRUE)) 497s 497s Calls: 497s m1: lm(formula = stack.loss ~ Air.Flow + Water.Temp, data = stackloss) 497s m2: lm(formula = stack.loss ~ Water.Temp + Acid.Conc., data = stackloss) 497s 497s Residual Statistics: 497s Min 1Q Median 3Q Max 497s m1: -7.529 -1.75 0.1894 2.116 5.659 497s m2: -7.820 -2.86 -0.6656 3.123 8.329 497s 497s Coefficients: 497s Estimate Std. Error t value Pr(>|t|) 497s (Intercept): m1: -50.3588 5.1383 -9.801 1.22e-08 *** 497s m2: -51.2361 18.5374 -2.764 0.01279 * 497s 497s Air.Flow: m1: 0.6712 0.1267 5.298 4.90e-05 *** 497s m2: 497s 497s Water.Temp: m1: 1.2954 0.3675 3.525 0.00242 ** 497s m2: 2.7320 0.3949 6.919 1.82e-06 *** 497s 497s Acid.Conc.: m1: 497s m2: 0.1290 0.2329 0.554 0.58657 497s --- 497s Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 497s 497s Residual Scale Estimates: 497s m1: 3.239 on 18 degrees of freedom 497s m2: 5.137 on 18 degrees of freedom 497s 497s Multiple R-squared: 497s m1: 0.9088 497s m2: 0.7704 497s 497s Correlations: 497s m1: 497s (Intercept) Air.Flow 497s Air.Flow -0.31 497s Water.Temp -0.34 -0.78 497s 497s m2: 497s (Intercept) Water.Temp 497s Water.Temp -0.03 497s Acid.Conc. -0.91 -0.39 497s 497s > 497s > pdf("fm3.pdf") 497s > plot(fm3, 1) 497s > plot(fm3, 2) 497s > plot(fm3, 3) 497s > plot(fm3, 4) 497s > plot(fm3, 5) 497s > plot(fm3, 6) 497s > plot(fm3, 7) 497s > plot(fm3, 8) 497s > plot(fm3, 9) 497s > dev.off() 497s null device 497s 1 497s > 497s > rm(fm3, fm3.sum) 497s > file.remove("fm3.pdf") 497s [1] TRUE 497s > 497s > 497s > ################################################################################ 497s > # Test models with different formulas and different subsets 497s > ################################################################################ 497s > 497s > m1 <- lm(stack.loss ~ Air.Flow + Water.Temp, data = stackloss, subset = -c(1, 2, 4, 21)) 497s > m2 <- lm(stack.loss ~ Water.Temp + Acid.Conc., data = stackloss) 497s > fm4 <- fit.models(m1, m2) 497s > print(fm4) 497s 497s Calls: 497s m1: lm(formula = stack.loss ~ Air.Flow + Water.Temp, data = stackloss, 497s subset = -c(1, 2, 4, 21)) 497s m2: lm(formula = stack.loss ~ Water.Temp + Acid.Conc., data = stackloss) 497s 497s Coefficients: 497s (Intercept) Air.Flow Water.Temp Acid.Conc. 497s m1 -48.4451 0.9052 0.5367 497s m2 -51.2361 2.7320 0.129 497s 497s > print(fm4.sum <- summary(fm4, correlation = TRUE)) 497s 497s Calls: 497s m1: lm(formula = stack.loss ~ Air.Flow + Water.Temp, data = stackloss, 497s subset = -c(1, 2, 4, 21)) 497s m2: lm(formula = stack.loss ~ Water.Temp + Acid.Conc., data = stackloss) 497s 497s Residual Statistics: 497s Min 1Q Median 3Q Max 497s m1: -2.719 -1.486 0.2814 0.9865 4.136 497s m2: -7.820 -2.860 -0.6656 3.1235 8.329 497s 497s Coefficients: 497s Estimate Std. Error t value Pr(>|t|) 497s (Intercept): m1: -48.4451 4.4107 -10.983 2.89e-08 *** 497s m2: -51.2361 18.5374 -2.764 0.0128 * 497s 497s Air.Flow: m1: 0.9052 0.1024 8.839 4.21e-07 *** 497s m2: 497s 497s Water.Temp: m1: 0.5367 0.2537 2.115 0.0528 . 497s m2: 2.7320 0.3949 6.919 1.82e-06 *** 497s 497s Acid.Conc.: m1: 497s m2: 0.1290 0.2329 0.554 0.5866 497s --- 497s Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 497s 497s Residual Scale Estimates: 497s m1: 1.918 on 14 degrees of freedom 497s m2: 5.137 on 18 degrees of freedom 497s 497s Multiple R-squared: 497s m1: 0.9369 497s m2: 0.7704 497s 497s Correlations: 497s m1: 497s (Intercept) Air.Flow 497s Air.Flow -0.53 497s Water.Temp -0.24 -0.69 497s 497s m2: 497s (Intercept) Water.Temp 497s Water.Temp -0.03 497s Acid.Conc. -0.91 -0.39 497s 497s > 497s > pdf("fm4.pdf") 497s > plot(fm4, 1) 497s > plot(fm4, 2) 497s > plot(fm4, 3) 497s > plot(fm4, 4) 497s > plot(fm4, 5) 497s > plot(fm4, 6) 497s > plot(fm4, 7) 497s > plot(fm4, 8) 498s > plot(fm4, 9) 498s > dev.off() 498s null device 498s 1 498s > 498s > rm(fm4, fm4.sum) 498s > file.remove("fm4.pdf") 498s [1] TRUE 498s > 498s > 498s > ################################################################################ 498s > # Test simple linear regression 498s > ################################################################################ 498s > 498s > fm5 <- fit.models(list(Robust = "rlm", LS = "lm"), stack.loss ~ Acid.Conc., data = stackloss) 498s > print(fm5) 498s 498s Calls: 498s Robust: rlm(formula = stack.loss ~ Acid.Conc., data = stackloss) 498s LS: lm(formula = stack.loss ~ Acid.Conc., data = stackloss) 498s 498s Coefficients: 498s (Intercept) Acid.Conc. 498s Robust -32.07 0.547 498s LS -47.96 0.759 498s 498s > print(fm5.sum <- summary(fm5, correlation = TRUE)) 498s 498s Calls: 498s Robust: rlm(formula = stack.loss ~ Acid.Conc., data = stackloss) 498s LS: lm(formula = stack.loss ~ Acid.Conc., data = stackloss) 498s 498s Residual Statistics: 498s Min 1Q Median 3Q Max 498s Robust: -8.649 -2.744 0.1617 2.446 25.35 498s LS: -11.584 -5.584 -3.0659 1.247 22.42 498s 498s Coefficients: 498s Estimate Std. Error t value Pr(>|t|) 498s (Intercept): Robust: -32.0654 21.6292 -1.483 498s LS: -47.9632 34.5044 -1.390 0.1806 498s 498s Acid.Conc.: Robust: 0.5474 0.2502 2.188 498s LS: 0.7590 0.3992 1.901 0.0725 . 498s --- 498s Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 498s 498s Residual Scale Estimates: 498s Robust: 4.037 on 19 degrees of freedom 498s LS: 9.565 on 19 degrees of freedom 498s 498s Multiple R-squared: 498s LS: 0.1599 498s 498s Correlations: 498s Robust: 498s (Intercept) 498s Acid.Conc. -1.00 498s 498s LS: 498s (Intercept) 498s Acid.Conc. -1.00 498s 498s > 498s > pdf("fm5.pdf") 498s > plot(fm5, 1) 498s > plot(fm5, 2) 498s > plot(fm5, 3) 498s > plot(fm5, 4) 498s > plot(fm5, 5) 498s > plot(fm5, 6) 498s > plot(fm5, 7) 498s > plot(fm5, 8) 498s > plot(fm5, 9) 498s > plot(fm5, 10) 498s > dev.off() 498s null device 498s 1 498s > 498s > rm(fm5, fm5.sum) 498s > file.remove("fm5.pdf") 498s [1] TRUE 498s > 498s > 498s > ################################################################################ 498s > 498s > 498s > 498s autopkgtest [11:38:22]: test run-unit-test: -----------------------] 499s autopkgtest [11:38:23]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 499s run-unit-test PASS 499s autopkgtest [11:38:23]: test pkg-r-autopkgtest: preparing testbed 500s Note, using file '/tmp/autopkgtest.JbCE7a/3-autopkgtest-satdep.dsc' to get the build dependencies 500s Reading package lists... 501s Building dependency tree... 501s Reading state information... 501s Starting pkgProblemResolver with broken count: 0 501s Starting 2 pkgProblemResolver with broken count: 0 501s Done 501s The following NEW packages will be installed: 501s dctrl-tools gfortran gfortran-13 gfortran-13-x86-64-linux-gnu 501s gfortran-x86-64-linux-gnu icu-devtools libblas-dev libbz2-dev 501s libgfortran-13-dev libicu-dev libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev 501s liblapack-dev liblzma-dev libncurses-dev libpcre2-16-0 libpcre2-32-0 501s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev 501s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev zlib1g-dev 501s 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. 501s Need to get 33.6 MB of archives. 501s After this operation, 130 MB of additional disk space will be used. 501s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 501s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 501s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 502s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 502s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 502s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 502s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 502s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 502s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 502s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 502s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 502s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 502s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 502s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 502s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 502s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 502s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 502s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 502s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 502s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 502s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 502s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 502s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 502s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 502s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 502s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 502s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 502s Get:28 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 502s Get:29 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 502s Fetched 33.6 MB in 0s (115 MB/s) 502s Selecting previously unselected package dctrl-tools. 502s (Reading database ... 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to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 503s Setting up dctrl-tools (2.24-3build2) ... 504s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 504s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ... 504s Setting up libpng-dev:amd64 (1.6.43-1) ... 504s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 504s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 504s Setting up pkgconf:amd64 (1.8.1-2) ... 504s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 504s Setting up liblapack-dev:amd64 (3.12.0-3) ... 504s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 504s Setting up pkg-config:amd64 (1.8.1-2) ... 504s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 504s Setting up gfortran (4:13.2.0-7ubuntu1) ... 504s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 504s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 504s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 504s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 504s Setting up r-base-dev (4.3.2-1build1) ... 504s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 504s Processing triggers for libc-bin (2.39-0ubuntu2) ... 504s Processing triggers for man-db (2.12.0-3) ... 504s Processing triggers for install-info (7.1-3) ... 505s Reading package lists... 505s Building dependency tree... 505s Reading state information... 505s Starting pkgProblemResolver with broken count: 0 505s Starting 2 pkgProblemResolver with broken count: 0 505s Done 506s The following NEW packages will be installed: 506s autopkgtest-satdep 506s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 506s Need to get 0 B/696 B of archives. 506s After this operation, 0 B of additional disk space will be used. 506s Get:1 /tmp/autopkgtest.JbCE7a/4-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 506s Selecting previously unselected package autopkgtest-satdep. 506s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 77334 files and directories currently installed.) 506s Preparing to unpack .../4-autopkgtest-satdep.deb ... 506s Unpacking autopkgtest-satdep (0) ... 506s Setting up autopkgtest-satdep (0) ... 508s (Reading database ... 77334 files and directories currently installed.) 508s Removing autopkgtest-satdep (0) ... 508s autopkgtest [11:38:32]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 508s autopkgtest [11:38:32]: test pkg-r-autopkgtest: [----------------------- 508s Test: Try to load the R library fit.models 508s 508s R version 4.3.2 (2023-10-31) -- "Eye Holes" 508s Copyright (C) 2023 The R Foundation for Statistical Computing 508s Platform: x86_64-pc-linux-gnu (64-bit) 508s 508s R is free software and comes with ABSOLUTELY NO WARRANTY. 508s You are welcome to redistribute it under certain conditions. 508s Type 'license()' or 'licence()' for distribution details. 508s 508s R is a collaborative project with many contributors. 508s Type 'contributors()' for more information and 508s 'citation()' on how to cite R or R packages in publications. 508s 508s Type 'demo()' for some demos, 'help()' for on-line help, or 508s 'help.start()' for an HTML browser interface to help. 508s Type 'q()' to quit R. 508s 508s > library('fit.models') 508s > 508s > 508s Other tests are currently unsupported! 508s They will be progressively added. 509s autopkgtest [11:38:33]: test pkg-r-autopkgtest: -----------------------] 509s autopkgtest [11:38:33]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 509s pkg-r-autopkgtest PASS 509s autopkgtest [11:38:33]: @@@@@@@@@@@@@@@@@@@@ summary 509s run-unit-test PASS 509s pkg-r-autopkgtest PASS 519s Creating nova instance adt-noble-i386-r-cran-fit.models-20240322-113004-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...