0s autopkgtest [05:26:14]: starting date and time: 2024-03-22 05:26:14+0000 0s autopkgtest [05:26:14]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [05:26:14]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.dbkzf7cx/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-cran-adegraphics --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-11.secgroup --name adt-noble-i386-r-cran-adegraphics-20240322-052614-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 432s autopkgtest [05:33:26]: testbed dpkg architecture: amd64 433s autopkgtest [05:33:27]: testbed apt version: 2.7.12 433s autopkgtest [05:33:27]: test architecture: i386 433s autopkgtest [05:33:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup 433s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 433s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 433s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 433s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 433s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3803 kB] 433s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [695 kB] 433s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [459 kB] 433s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 433s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 433s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 433s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 433s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1274 kB] 433s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4245 kB] 433s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 433s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 433s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 433s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 436s Fetched 11.3 MB in 1s (8256 kB/s) 436s Reading package lists... 438s Reading package lists... 438s Building dependency tree... 438s Reading state information... 439s Calculating upgrade... 439s The following packages will be upgraded: 439s cloud-init fonts-ubuntu-console python3-markupsafe 439s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 439s Need to get 629 kB of archives. 439s After this operation, 11.3 kB disk space will be freed. 439s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 439s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 439s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 440s Preconfiguring packages ... 440s Fetched 629 kB in 0s (18.2 MB/s) 440s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 440s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 440s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 440s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 440s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 440s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 440s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 440s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 440s Setting up cloud-init (24.1.2-0ubuntu1) ... 441s Setting up python3-markupsafe (2.1.5-1build1) ... 441s Processing triggers for man-db (2.12.0-3) ... 442s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 442s Reading package lists... 442s Building dependency tree... 442s Reading state information... 443s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 443s sh: Attempting to set up Debian/Ubuntu apt sources automatically 443s sh: Distribution appears to be Ubuntu 444s Reading package lists... 444s Building dependency tree... 444s Reading state information... 445s eatmydata is already the newest version (131-1). 445s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 445s Reading package lists... 445s Building dependency tree... 445s Reading state information... 445s dbus is already the newest version (1.14.10-4ubuntu1). 445s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 445s Reading package lists... 445s Building dependency tree... 445s Reading state information... 446s rng-tools-debian is already the newest version (2.4). 446s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 446s Reading package lists... 446s Building dependency tree... 446s Reading state information... 446s The following packages will be REMOVED: 446s cloud-init* python3-configobj* python3-debconf* 446s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 446s After this operation, 3256 kB disk space will be freed. 447s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 447s Removing cloud-init (24.1.2-0ubuntu1) ... 447s Removing python3-configobj (5.0.8-3) ... 447s Removing python3-debconf (1.5.86) ... 447s Processing triggers for man-db (2.12.0-3) ... 448s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 448s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 448s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 448s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 448s invoke-rc.d: policy-rc.d denied execution of try-restart. 448s Reading package lists... 449s Building dependency tree... 449s Reading state information... 449s linux-generic is already the newest version (6.8.0-11.11+1). 449s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 449s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 449s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 449s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 451s Reading package lists... 451s Reading package lists... 451s Building dependency tree... 451s Reading state information... 452s Calculating upgrade... 452s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 452s Reading package lists... 452s Building dependency tree... 452s Reading state information... 452s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 452s autopkgtest [05:33:46]: rebooting testbed after setup commands that affected boot 614s autopkgtest [05:36:28]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 615s autopkgtest [05:36:29]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-adegraphics 616s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-adegraphics 1.0-21-1 (dsc) [2334 B] 616s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-adegraphics 1.0-21-1 (tar) [2868 kB] 616s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-adegraphics 1.0-21-1 (diff) [3404 B] 616s gpgv: Signature made Tue Oct 17 06:34:49 2023 UTC 616s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 616s gpgv: issuer "tille@debian.org" 616s gpgv: Can't check signature: No public key 616s dpkg-source: warning: cannot verify inline signature for ./r-cran-adegraphics_1.0-21-1.dsc: no acceptable signature found 616s autopkgtest [05:36:30]: testing package r-cran-adegraphics version 1.0-21-1 616s autopkgtest [05:36:30]: build not needed 617s autopkgtest [05:36:31]: test run-unit-test: preparing testbed 622s Note, using file '/tmp/autopkgtest.OnMooF/1-autopkgtest-satdep.dsc' to get the build dependencies 622s Reading package lists... 622s Building dependency tree... 622s Reading state information... 623s Starting pkgProblemResolver with broken count: 0 623s Starting 2 pkgProblemResolver with broken count: 0 623s Done 623s The following NEW packages will be installed: 623s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 623s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 623s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 623s g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 623s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins 623s javascript-common libaec0 libarmadillo12 libarpack2 libasan8 libatomic1 623s libblas3 libblosc1 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcfitsio10 623s libcrypt-dev libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 623s libfreexl1 libfyba0 libgcc-13-dev libgdal34 libgeos-c1v5 libgeos3.12.1 623s libgeotiff5 libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b 623s libhdf4-0-alt libhdf5-103-1 libhdf5-hl-100 libheif-plugin-dav1d 623s libheif-plugin-libde265 libheif1 libhwasan0 libice6 libisl23 libitm1 623s libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 623s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 623s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 623s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 623s libjs-sifter.js libjs-twitter-bootstrap-datepicker libkmlbase1 libkmldom1 623s libkmlengine1 liblapack3 liblcms2-2 liblerc4 liblsan0 libltdl7 liblua5.4-0 623s libminizip1 libmpc3 libmysqlclient21 libnetcdf19 libnlopt0 libnsl-dev 623s libodbc2 libodbcinst2 libogdi4.1 libopenjp2-7 libpango-1.0-0 623s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 623s libpoppler134 libpq5 libproj25 libqhull-r8.0 libquadmath0 librttopo1 623s libsharpyuv0 libsm6 libsnappy1v5 libspatialite8 libstdc++-13-dev libsuperlu6 623s libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 623s libtsan2 libubsan1 libudunits2-0 libudunits2-data liburiparser1 libwebp7 623s libxcb-render0 libxcb-shm0 libxerces-c3.2 libxft2 libxrender1 libxss1 libxt6 623s linux-libc-dev littler mysql-common node-bootstrap-sass node-html5shiv 623s node-normalize.css pandoc pandoc-data proj-data r-base-core r-cran-abind 623s r-cran-ade4 r-cran-adegraphics r-cran-backports r-cran-base64enc r-cran-bit 623s r-cran-bit64 r-cran-boot r-cran-brio r-cran-broom r-cran-bslib r-cran-cachem 623s r-cran-callr r-cran-car r-cran-cardata r-cran-caret r-cran-cellranger 623s r-cran-class r-cran-classint r-cran-cli r-cran-clipr r-cran-clock 623s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-conquer 623s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi 623s r-cran-deldir r-cran-desc r-cran-diagram r-cran-diffobj r-cran-digest 623s r-cran-dplyr r-cran-e1071 r-cran-ellipsis r-cran-evaluate r-cran-fansi 623s r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-forcats 623s r-cran-foreach r-cran-foreign r-cran-fs r-cran-future r-cran-future.apply 623s r-cran-generics r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gower 623s r-cran-gtable r-cran-hardhat r-cran-haven r-cran-highr r-cran-hms 623s r-cran-htmltools r-cran-httpuv r-cran-interp r-cran-ipred r-cran-isoband 623s r-cran-iterators r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 623s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice 623s r-cran-latticeextra r-cran-lava r-cran-lifecycle r-cran-listenv 623s r-cran-littler r-cran-lme4 r-cran-lubridate r-cran-magrittr r-cran-maptools 623s r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixmodels 623s r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-minqa 623s r-cran-modelmetrics r-cran-munsell r-cran-nlme r-cran-nloptr r-cran-nnet 623s r-cran-numderiv r-cran-openxlsx r-cran-parallelly r-cran-pbkrtest 623s r-cran-pillar r-cran-pixmap r-cran-pkgbuild r-cran-pkgconfig 623s r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-png r-cran-praise 623s r-cran-prettyunits r-cran-proc r-cran-processx r-cran-prodlim 623s r-cran-progress r-cran-progressr r-cran-promises r-cran-proxy r-cran-ps 623s r-cran-purrr r-cran-quantreg r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 623s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 623s r-cran-rcpparmadillo r-cran-rcppeigen r-cran-readr r-cran-readxl 623s r-cran-recipes r-cran-rematch r-cran-rematch2 r-cran-reshape2 r-cran-rio 623s r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-s2 623s r-cran-sass r-cran-scales r-cran-sf r-cran-shape r-cran-shiny 623s r-cran-sourcetools r-cran-sp r-cran-sparsem r-cran-spdata r-cran-spdep 623s r-cran-squarem r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival 623s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 623s r-cran-timechange r-cran-timedate r-cran-tinytex r-cran-tzdb r-cran-units 623s r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-vroom r-cran-waldo 623s r-cran-withr r-cran-wk r-cran-writexl r-cran-xfun r-cran-xtable r-cran-yaml 623s r-cran-zip rpcsvc-proto unixodbc-common unzip x11-common xdg-utils zip 623s 0 upgraded, 334 newly installed, 0 to remove and 0 not upgraded. 623s Need to get 318 MB of archives. 623s After this operation, 944 MB of additional disk space will be used. 623s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 623s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 623s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 623s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 623s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 623s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 623s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 623s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 623s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 623s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 623s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 623s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 623s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 623s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 623s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 623s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 623s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 623s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 623s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 623s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 623s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 623s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 623s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 623s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 623s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 624s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 624s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 624s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 624s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 624s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 624s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 624s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 624s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 624s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 624s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 624s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 624s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 624s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 624s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 624s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 624s Get:41 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 624s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 624s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 gdal-data all 3.8.4+dfsg-1 [261 kB] 624s Get:44 http://ftpmaster.internal/ubuntu noble/universe amd64 gdal-plugins amd64 3.8.4+dfsg-1 [24.5 kB] 624s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 624s Get:46 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 624s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 624s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 624s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 624s Get:50 http://ftpmaster.internal/ubuntu noble/universe amd64 libarpack2 amd64 3.9.1-1 [105 kB] 624s Get:51 http://ftpmaster.internal/ubuntu noble/universe amd64 libsuperlu6 amd64 6.0.1+dfsg1-1 [184 kB] 624s Get:52 http://ftpmaster.internal/ubuntu noble/universe amd64 libarmadillo12 amd64 1:12.6.7+dfsg-1 [135 kB] 624s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libsnappy1v5 amd64 1.1.10-1 [28.4 kB] 624s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 libblosc1 amd64 1.21.5+ds-1 [36.5 kB] 624s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 624s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 624s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 624s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 624s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 624s Get:60 http://ftpmaster.internal/ubuntu noble/universe amd64 libcfitsio10 amd64 4.3.1-1 [528 kB] 624s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 624s Get:62 http://ftpmaster.internal/ubuntu noble/universe amd64 libdav1d7 amd64 1.4.0-1 [605 kB] 624s Get:63 http://ftpmaster.internal/ubuntu noble/universe amd64 libde265-0 amd64 1.0.15-1 [192 kB] 624s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 624s Get:65 http://ftpmaster.internal/ubuntu noble/universe amd64 libfyba0 amd64 4.1.1-8 [119 kB] 624s Get:66 http://ftpmaster.internal/ubuntu noble/universe amd64 libminizip1 amd64 1:1.3.dfsg-3ubuntu1 [21.8 kB] 624s Get:67 http://ftpmaster.internal/ubuntu noble/universe amd64 libfreexl1 amd64 2.0.0-1 [41.8 kB] 624s Get:68 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeos3.12.1 amd64 3.12.1-1 [852 kB] 624s Get:69 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeos-c1v5 amd64 3.12.1-1 [96.1 kB] 624s Get:70 http://ftpmaster.internal/ubuntu noble/universe amd64 proj-data all 9.3.1-1 [7867 kB] 624s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 624s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 624s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 624s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 624s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 624s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 624s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 624s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libproj25 amd64 9.3.1-1 [1379 kB] 624s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeotiff5 amd64 1.7.1-5 [62.5 kB] 624s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libgif7 amd64 5.2.1-2.5 [34.0 kB] 624s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf4-0-alt amd64 4.2.16-3 [282 kB] 624s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 624s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 624s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif-plugin-dav1d amd64 1.17.6-1ubuntu1 [10.9 kB] 624s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif-plugin-libde265 amd64 1.17.6-1ubuntu1 [9024 B] 624s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif1 amd64 1.17.6-1ubuntu1 [325 kB] 624s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 liburiparser1 amd64 0.9.7+dfsg-2 [35.9 kB] 624s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmlbase1 amd64 1.3.0-10 [47.4 kB] 624s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmldom1 amd64 1.3.0-10 [151 kB] 624s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmlengine1 amd64 1.3.0-10 [69.3 kB] 624s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 mysql-common all 5.8+1.1.0 [6626 B] 624s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libmysqlclient21 amd64 8.0.36-1 [1283 kB] 624s Get:93 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB] 624s Get:94 http://ftpmaster.internal/ubuntu noble/universe amd64 libnetcdf19 amd64 1:4.9.2-3ubuntu1 [472 kB] 624s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libltdl7 amd64 2.4.7-7 [40.5 kB] 624s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libodbc2 amd64 2.3.12-1 [159 kB] 624s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 unixodbc-common all 2.3.12-1 [8524 B] 624s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libodbcinst2 amd64 2.3.12-1 [30.9 kB] 624s Get:99 http://ftpmaster.internal/ubuntu noble/universe amd64 libogdi4.1 amd64 4.1.1+ds-1 [218 kB] 624s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libopenjp2-7 amd64 2.5.0-2 [174 kB] 624s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 liblcms2-2 amd64 2.14-2 [161 kB] 624s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpoppler134 amd64 24.02.0-1ubuntu2 [1112 kB] 624s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpq5 amd64 16.2-1 [138 kB] 624s Get:104 http://ftpmaster.internal/ubuntu noble/universe amd64 libqhull-r8.0 amd64 2020.2-6 [194 kB] 624s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 librttopo1 amd64 1.1.0-3 [191 kB] 624s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 libspatialite8 amd64 5.1.0-1 [2055 kB] 624s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 libxerces-c3.2 amd64 3.2.4+debian-1.1 [1110 kB] 624s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 libgdal34 amd64 3.8.4+dfsg-1 [8343 kB] 624s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 624s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 624s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 624s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 624s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 624s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 624s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 624s Get:116 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 624s Get:117 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 624s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 624s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 624s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 624s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 624s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 624s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 624s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 624s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 624s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 624s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 624s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 624s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 624s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 624s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 624s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 624s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 624s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 624s Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 624s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 624s Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 624s Get:138 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 624s Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 624s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 libudunits2-data all 2.2.28-7 [19.3 kB] 624s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 libudunits2-0 amd64 2.2.28-7 [54.2 kB] 624s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 624s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 624s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 624s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 624s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 624s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 624s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 624s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 624s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 624s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 624s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 624s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 624s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 624s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 624s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pixmap all 0.4-12-1 [201 kB] 624s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 624s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sp amd64 1:2.1-2+dfsg-1 [1447 kB] 624s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 624s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 624s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpparmadillo amd64 0.12.8.0.0-1 [862 kB] 624s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ade4 amd64 1.7-22-1 [5333 kB] 624s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-kernsmooth amd64 2.23-22-1 [91.7 kB] 624s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 624s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 624s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 624s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-deldir amd64 2.0-4-1 [270 kB] 624s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 625s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppeigen amd64 0.3.3.9.4-1 [1189 kB] 625s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 625s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 625s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-adegraphics all 1.0-21-1 [3262 kB] 625s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-backports amd64 1.4.1-1 [101 kB] 625s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 625s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 625s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 625s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-boot all 1.3-30-1 [619 kB] 625s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 625s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 625s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 625s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 625s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 625s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 625s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 625s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 625s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 625s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 625s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 625s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 625s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 625s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 625s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 625s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 625s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 625s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 625s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 625s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 625s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 625s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 625s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 625s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-broom all 1.0.5+dfsg-1 [1729 kB] 625s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 625s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 625s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 625s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 625s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 625s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 625s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 625s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 625s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 625s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 625s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 625s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 625s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 625s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 625s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 625s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cardata all 3.0.5-1 [1819 kB] 625s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 625s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 625s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nnet amd64 7.3-19-2 [112 kB] 625s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-minqa amd64 1.2.6-1 [116 kB] 625s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 libnlopt0 amd64 2.7.1-5build2 [184 kB] 625s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 625s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 625s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 625s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 625s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 625s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 625s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 625s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 625s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 625s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 625s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 625s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nloptr amd64 2.0.3-1 [381 kB] 625s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 625s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lme4 amd64 1.1-35.1-4 [4138 kB] 625s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] 625s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 625s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 625s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 625s Get:241 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 625s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 625s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pbkrtest all 0.5.2-2 [182 kB] 625s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sparsem amd64 1.81-1 [905 kB] 625s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixmodels all 0.5-3-1 [361 kB] 625s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 625s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 625s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 625s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 625s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 625s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 625s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 625s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 625s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 625s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 625s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 625s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-class amd64 7.3-22-2 [88.3 kB] 625s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 625s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-e1071 amd64 1.7-14-1 [558 kB] 625s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 625s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-iterators all 1.0.14-1 [336 kB] 625s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-foreach all 1.5.2-1 [124 kB] 625s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-data.table amd64 1.14.10+dfsg-1 [1837 kB] 625s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-modelmetrics amd64 1.2.2.2-1build1 [128 kB] 625s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 625s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-proc amd64 1.18.5-1 [966 kB] 625s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] 625s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-clock amd64 0.7.0-1.1 [1765 kB] 625s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gower amd64 1.0.1-1 [207 kB] 625s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hardhat all 1.3.1+dfsg-1 [554 kB] 625s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rpart amd64 4.1.23-1 [661 kB] 625s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shape all 1.4.6-1 [770 kB] 625s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diagram all 1.6.5-2 [656 kB] 625s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-globals all 0.16.2-1 [117 kB] 625s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 625s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-parallelly amd64 1.37.1-1 [365 kB] 625s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 625s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-future.apply all 1.11.1+dfsg-1 [171 kB] 625s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progressr all 0.14.0-1 [338 kB] 625s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-squarem all 2021.1-1 [179 kB] 625s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lava all 1.7.3+dfsg-1 [2166 kB] 625s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prodlim amd64 2023.08.28-1 [408 kB] 625s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ipred amd64 0.9-14-1 [383 kB] 625s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-timechange amd64 0.3.0-1 [178 kB] 625s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lubridate amd64 1.9.3+dfsg-1 [1010 kB] 625s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-timedate amd64 4032.109-1 [1229 kB] 625s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-recipes all 1.0.9+dfsg-1 [1964 kB] 625s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 625s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-caret amd64 6.0-94+dfsg-1 [3434 kB] 625s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-conquer amd64 1.3.3-1 [499 kB] 625s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-quantreg amd64 5.97-1 [1533 kB] 625s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-foreign amd64 0.8.86-1 [242 kB] 625s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-maptools amd64 1:1.1-8+dfsg-1 [1365 kB] 625s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-forcats all 1.0.0-1 [369 kB] 625s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 625s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-clipr all 0.8.0-1 [53.5 kB] 625s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 625s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 625s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vroom amd64 1.6.5-1 [848 kB] 625s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-readr amd64 2.1.5-1 [766 kB] 625s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-haven amd64 2.5.4-1 [346 kB] 625s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 625s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch all 2.0.0-1 [18.3 kB] 625s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cellranger all 1.1.0-3 [102 kB] 625s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-readxl amd64 1.4.3-1 [736 kB] 625s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-writexl amd64 1.5.0-1 [157 kB] 625s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 625s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.oo all 1.26.0-1 [955 kB] 625s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.utils all 2.12.3-1 [1386 kB] 625s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-zip amd64 2.3.1-1 [123 kB] 625s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openxlsx amd64 4.2.5.2-1 [1943 kB] 625s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rio all 1.0.1-1 [529 kB] 625s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-car all 3.1-2-2 [1692 kB] 625s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-classint amd64 0.4-10+dfsg-1 [106 kB] 625s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 625s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 625s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 625s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 625s Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 625s Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 625s Get:321 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-markdown all 1.12+dfsg-1 [179 kB] 625s Get:322 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 625s Get:323 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 625s Get:324 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 625s Get:325 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 625s Get:326 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 625s Get:327 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 626s Get:328 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 626s Get:329 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-wk amd64 0.9.1-1 [1784 kB] 626s Get:330 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-s2 amd64 1.1.6-1 [1980 kB] 626s Get:331 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-units amd64 0.8-5+dfsg-1 [275 kB] 626s Get:332 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sf amd64 1.0-15+dfsg-1 [3028 kB] 626s Get:333 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spdata all 2.3.0-1 [3734 kB] 626s Get:334 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spdep amd64 1.3-1+dfsg-1 [2134 kB] 626s Preconfiguring packages ... 626s Fetched 318 MB in 3s (126 MB/s) 627s Selecting previously unselected package libc-dev-bin. 627s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 627s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 627s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 627s Selecting previously unselected package linux-libc-dev:amd64. 627s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 627s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 627s Selecting previously unselected package libcrypt-dev:amd64. 627s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 627s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 627s Selecting previously unselected package libtirpc-dev:amd64. 627s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 627s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 627s Selecting previously unselected package libnsl-dev:amd64. 627s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 627s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 627s Selecting previously unselected package rpcsvc-proto. 627s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 627s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 627s Selecting previously unselected package libc6-dev:amd64. 627s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 627s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 627s Selecting previously unselected package libisl23:amd64. 627s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 627s Unpacking libisl23:amd64 (0.26-3) ... 627s Selecting previously unselected package libmpc3:amd64. 627s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 627s Unpacking libmpc3:amd64 (1.3.1-1) ... 627s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 627s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 627s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 628s Selecting previously unselected package cpp-13. 628s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 628s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 628s Selecting previously unselected package cpp-x86-64-linux-gnu. 628s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 628s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 628s Selecting previously unselected package cpp. 628s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 628s Unpacking cpp (4:13.2.0-7ubuntu1) ... 628s Selecting previously unselected package libcc1-0:amd64. 628s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 628s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 628s Selecting previously unselected package libgomp1:amd64. 628s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 628s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 628s Selecting previously unselected package libitm1:amd64. 628s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 628s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 628s Selecting previously unselected package libatomic1:amd64. 628s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 628s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 628s Selecting previously unselected package libasan8:amd64. 628s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 628s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 628s Selecting previously unselected package liblsan0:amd64. 628s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 628s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 628s Selecting previously unselected package libtsan2:amd64. 628s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 628s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 628s Selecting previously unselected package libubsan1:amd64. 628s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 628s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 628s Selecting previously unselected package libhwasan0:amd64. 628s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 628s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 628s Selecting previously unselected package libquadmath0:amd64. 628s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 628s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 628s Selecting previously unselected package libgcc-13-dev:amd64. 628s 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gdal-plugins:amd64 (3.8.4+dfsg-1) ... 630s Selecting previously unselected package javascript-common. 630s Preparing to unpack .../044-javascript-common_11+nmu1_all.deb ... 630s Unpacking javascript-common (11+nmu1) ... 630s Selecting previously unselected package libaec0:amd64. 630s Preparing to unpack .../045-libaec0_1.1.2-1_amd64.deb ... 630s Unpacking libaec0:amd64 (1.1.2-1) ... 630s Selecting previously unselected package libblas3:amd64. 630s Preparing to unpack .../046-libblas3_3.12.0-3_amd64.deb ... 630s Unpacking libblas3:amd64 (3.12.0-3) ... 630s Selecting previously unselected package libgfortran5:amd64. 630s Preparing to unpack .../047-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 630s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 630s Selecting previously unselected package liblapack3:amd64. 630s Preparing to unpack .../048-liblapack3_3.12.0-3_amd64.deb ... 630s Unpacking liblapack3:amd64 (3.12.0-3) ... 631s Selecting previously unselected package libarpack2:amd64. 631s Preparing to unpack .../049-libarpack2_3.9.1-1_amd64.deb ... 631s Unpacking libarpack2:amd64 (3.9.1-1) ... 631s Selecting previously unselected package libsuperlu6:amd64. 631s Preparing to unpack .../050-libsuperlu6_6.0.1+dfsg1-1_amd64.deb ... 631s Unpacking libsuperlu6:amd64 (6.0.1+dfsg1-1) ... 631s Selecting previously unselected package libarmadillo12. 631s Preparing to unpack .../051-libarmadillo12_1%3a12.6.7+dfsg-1_amd64.deb ... 631s Unpacking libarmadillo12 (1:12.6.7+dfsg-1) ... 631s Selecting previously unselected package libsnappy1v5:amd64. 631s Preparing to unpack .../052-libsnappy1v5_1.1.10-1_amd64.deb ... 631s Unpacking libsnappy1v5:amd64 (1.1.10-1) ... 631s Selecting previously unselected package libblosc1:amd64. 631s Preparing to unpack .../053-libblosc1_1.21.5+ds-1_amd64.deb ... 631s Unpacking libblosc1:amd64 (1.21.5+ds-1) ... 631s Selecting previously unselected package libpixman-1-0:amd64. 631s Preparing to unpack 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631s Selecting previously unselected package libdatrie1:amd64. 631s Preparing to unpack .../060-libdatrie1_0.2.13-3_amd64.deb ... 631s Unpacking libdatrie1:amd64 (0.2.13-3) ... 631s Selecting previously unselected package libdav1d7:amd64. 631s Preparing to unpack .../061-libdav1d7_1.4.0-1_amd64.deb ... 631s Unpacking libdav1d7:amd64 (1.4.0-1) ... 631s Selecting previously unselected package libde265-0:amd64. 631s Preparing to unpack .../062-libde265-0_1.0.15-1_amd64.deb ... 631s Unpacking libde265-0:amd64 (1.0.15-1) ... 631s Selecting previously unselected package libdeflate0:amd64. 631s Preparing to unpack .../063-libdeflate0_1.19-1_amd64.deb ... 631s Unpacking libdeflate0:amd64 (1.19-1) ... 631s Selecting previously unselected package libfyba0:amd64. 631s Preparing to unpack .../064-libfyba0_4.1.1-8_amd64.deb ... 631s Unpacking libfyba0:amd64 (4.1.1-8) ... 631s Selecting previously unselected package libminizip1:amd64. 631s Preparing to unpack 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631s Selecting previously unselected package libjpeg-turbo8:amd64. 631s Preparing to unpack .../071-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 631s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 631s Selecting previously unselected package libjpeg8:amd64. 631s Preparing to unpack .../072-libjpeg8_8c-2ubuntu11_amd64.deb ... 631s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 631s Selecting previously unselected package liblerc4:amd64. 631s Preparing to unpack .../073-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 631s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 632s Selecting previously unselected package libsharpyuv0:amd64. 632s Preparing to unpack .../074-libsharpyuv0_1.3.2-0.4_amd64.deb ... 632s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 632s Selecting previously unselected package libwebp7:amd64. 632s Preparing to unpack .../075-libwebp7_1.3.2-0.4_amd64.deb ... 632s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 632s Selecting previously unselected package libtiff6:amd64. 632s 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Unpacking liburiparser1:amd64 (0.9.7+dfsg-2) ... 632s Selecting previously unselected package libkmlbase1:amd64. 632s Preparing to unpack .../087-libkmlbase1_1.3.0-10_amd64.deb ... 632s Unpacking libkmlbase1:amd64 (1.3.0-10) ... 632s Selecting previously unselected package libkmldom1:amd64. 632s Preparing to unpack .../088-libkmldom1_1.3.0-10_amd64.deb ... 632s Unpacking libkmldom1:amd64 (1.3.0-10) ... 632s Selecting previously unselected package libkmlengine1:amd64. 632s Preparing to unpack .../089-libkmlengine1_1.3.0-10_amd64.deb ... 632s Unpacking libkmlengine1:amd64 (1.3.0-10) ... 632s Selecting previously unselected package mysql-common. 632s Preparing to unpack .../090-mysql-common_5.8+1.1.0_all.deb ... 632s Unpacking mysql-common (5.8+1.1.0) ... 632s Selecting previously unselected package libmysqlclient21:amd64. 632s Preparing to unpack .../091-libmysqlclient21_8.0.36-1_amd64.deb ... 632s Unpacking libmysqlclient21:amd64 (8.0.36-1) ... 632s Selecting previously unselected package libhdf5-hl-100:amd64. 632s Preparing to unpack .../092-libhdf5-hl-100_1.10.10+repack-3ubuntu1_amd64.deb ... 632s Unpacking libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 632s Selecting previously unselected package libnetcdf19:amd64. 632s Preparing to unpack .../093-libnetcdf19_1%3a4.9.2-3ubuntu1_amd64.deb ... 632s Unpacking libnetcdf19:amd64 (1:4.9.2-3ubuntu1) ... 632s Selecting previously unselected package libltdl7:amd64. 632s Preparing to unpack .../094-libltdl7_2.4.7-7_amd64.deb ... 632s Unpacking libltdl7:amd64 (2.4.7-7) ... 632s Selecting previously unselected package libodbc2:amd64. 632s Preparing to unpack .../095-libodbc2_2.3.12-1_amd64.deb ... 632s Unpacking libodbc2:amd64 (2.3.12-1) ... 632s Selecting previously unselected package unixodbc-common. 632s Preparing to unpack .../096-unixodbc-common_2.3.12-1_all.deb ... 632s Unpacking unixodbc-common (2.3.12-1) ... 632s Selecting previously unselected package libodbcinst2:amd64. 632s Preparing to unpack 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previously unselected package libqhull-r8.0:amd64. 632s Preparing to unpack .../103-libqhull-r8.0_2020.2-6_amd64.deb ... 632s Unpacking libqhull-r8.0:amd64 (2020.2-6) ... 632s Selecting previously unselected package librttopo1:amd64. 632s Preparing to unpack .../104-librttopo1_1.1.0-3_amd64.deb ... 632s Unpacking librttopo1:amd64 (1.1.0-3) ... 632s Selecting previously unselected package libspatialite8:amd64. 632s Preparing to unpack .../105-libspatialite8_5.1.0-1_amd64.deb ... 632s Unpacking libspatialite8:amd64 (5.1.0-1) ... 633s Selecting previously unselected package libxerces-c3.2:amd64. 633s Preparing to unpack .../106-libxerces-c3.2_3.2.4+debian-1.1_amd64.deb ... 633s Unpacking libxerces-c3.2:amd64 (3.2.4+debian-1.1) ... 633s Selecting previously unselected package libgdal34:amd64. 633s Preparing to unpack .../107-libgdal34_3.8.4+dfsg-1_amd64.deb ... 633s Unpacking libgdal34:amd64 (3.8.4+dfsg-1) ... 633s Selecting previously unselected package libgraphite2-3:amd64. 633s Preparing to unpack .../108-libgraphite2-3_1.3.14-2_amd64.deb ... 633s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 633s Selecting previously unselected package libharfbuzz0b:amd64. 633s Preparing to unpack .../109-libharfbuzz0b_8.3.0-2_amd64.deb ... 633s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 633s Selecting previously unselected package x11-common. 633s Preparing to unpack .../110-x11-common_1%3a7.7+23ubuntu2_all.deb ... 633s Unpacking x11-common (1:7.7+23ubuntu2) ... 633s Selecting previously unselected package libice6:amd64. 633s Preparing to unpack .../111-libice6_2%3a1.0.10-1build2_amd64.deb ... 633s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 633s Selecting previously unselected package libjs-bootstrap. 633s Preparing to unpack .../112-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 633s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 633s Selecting previously unselected package libjs-popper.js. 633s Preparing to unpack .../113-libjs-popper.js_1.16.1+ds-6_all.deb ... 633s 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package libjs-jquery-datatables. 633s Preparing to unpack .../119-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 633s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 633s Selecting previously unselected package libjs-sifter.js. 633s Preparing to unpack .../120-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 633s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 633s Selecting previously unselected package libjs-microplugin.js. 633s Preparing to unpack .../121-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 633s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 633s Selecting previously unselected package libjs-jquery-selectize.js. 633s Preparing to unpack .../122-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 633s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 633s Selecting previously unselected package libjs-jquery-ui. 633s Preparing to unpack .../123-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 633s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 633s Selecting previously unselected package libjs-json. 633s Preparing to unpack .../124-libjs-json_0~20221030+~1.0.8-1_all.deb ... 633s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 633s Selecting previously unselected package libjs-prettify. 633s Preparing to unpack .../125-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 633s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 633s Selecting previously unselected package liblua5.4-0:amd64. 633s Preparing to unpack .../126-liblua5.4-0_5.4.6-3_amd64.deb ... 633s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 633s Selecting previously unselected package libthai-data. 633s Preparing to unpack .../127-libthai-data_0.1.29-2_all.deb ... 633s Unpacking libthai-data (0.1.29-2) ... 634s Selecting previously unselected package libthai0:amd64. 634s Preparing to unpack .../128-libthai0_0.1.29-2_amd64.deb ... 634s Unpacking libthai0:amd64 (0.1.29-2) ... 634s Selecting previously unselected package libpango-1.0-0:amd64. 634s Preparing to unpack .../129-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 634s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 634s Selecting previously unselected package libpangoft2-1.0-0:amd64. 634s Preparing to unpack .../130-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 634s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 634s Selecting previously unselected package libpangocairo-1.0-0:amd64. 634s Preparing to unpack .../131-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 634s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 634s Selecting previously unselected package libpaper1:amd64. 634s Preparing to unpack .../132-libpaper1_1.1.29_amd64.deb ... 634s Unpacking libpaper1:amd64 (1.1.29) ... 634s Selecting previously unselected package libpaper-utils. 634s Preparing to unpack .../133-libpaper-utils_1.1.29_amd64.deb ... 634s Unpacking libpaper-utils (1.1.29) ... 634s Selecting previously unselected package libsm6:amd64. 634s Preparing to unpack .../134-libsm6_2%3a1.2.3-1build2_amd64.deb ... 634s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 634s Selecting previously unselected package libtcl8.6:amd64. 634s Preparing to unpack .../135-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 634s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 634s Selecting previously unselected package libxft2:amd64. 634s Preparing to unpack .../136-libxft2_2.3.6-1_amd64.deb ... 634s Unpacking libxft2:amd64 (2.3.6-1) ... 634s Selecting previously unselected package libxss1:amd64. 634s Preparing to unpack .../137-libxss1_1%3a1.2.3-1build2_amd64.deb ... 634s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 634s Selecting previously unselected package libtk8.6:amd64. 634s Preparing to unpack .../138-libtk8.6_8.6.13-2_amd64.deb ... 634s Unpacking libtk8.6:amd64 (8.6.13-2) ... 634s Selecting previously unselected package libudunits2-data. 634s Preparing to unpack .../139-libudunits2-data_2.2.28-7_all.deb ... 634s Unpacking libudunits2-data (2.2.28-7) ... 634s Selecting previously unselected package libudunits2-0. 634s Preparing to unpack .../140-libudunits2-0_2.2.28-7_amd64.deb ... 634s Unpacking libudunits2-0 (2.2.28-7) ... 634s Selecting previously unselected package libxt6:amd64. 634s Preparing to unpack .../141-libxt6_1%3a1.2.1-1.1_amd64.deb ... 634s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 634s Selecting previously unselected package zip. 634s Preparing to unpack .../142-zip_3.0-13_amd64.deb ... 634s Unpacking zip (3.0-13) ... 634s Selecting previously unselected package unzip. 634s Preparing to unpack .../143-unzip_6.0-28ubuntu3_amd64.deb ... 634s Unpacking unzip (6.0-28ubuntu3) ... 634s Selecting previously unselected package xdg-utils. 634s Preparing to unpack .../144-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 634s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 634s Selecting previously unselected package r-base-core. 634s Preparing to unpack .../145-r-base-core_4.3.2-1build1_amd64.deb ... 634s Unpacking r-base-core (4.3.2-1build1) ... 634s Selecting previously unselected package r-cran-littler. 634s Preparing to unpack .../146-r-cran-littler_0.3.19-1_amd64.deb ... 634s Unpacking r-cran-littler (0.3.19-1) ... 634s Selecting previously unselected package littler. 634s Preparing to unpack .../147-littler_0.3.19-1_all.deb ... 634s Unpacking littler (0.3.19-1) ... 634s Selecting previously unselected package node-bootstrap-sass. 634s Preparing to unpack .../148-node-bootstrap-sass_3.4.3-2_all.deb ... 634s Unpacking node-bootstrap-sass (3.4.3-2) ... 634s Selecting previously unselected package node-html5shiv. 634s Preparing to unpack .../149-node-html5shiv_3.7.3+dfsg-5_all.deb ... 634s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 635s Selecting previously unselected package node-normalize.css. 635s Preparing to unpack .../150-node-normalize.css_8.0.1-5_all.deb ... 635s Unpacking node-normalize.css (8.0.1-5) ... 635s Selecting previously unselected package pandoc-data. 635s Preparing to unpack .../151-pandoc-data_3.1.3-1_all.deb ... 635s Unpacking pandoc-data (3.1.3-1) ... 635s Selecting previously unselected package pandoc. 635s Preparing to unpack .../152-pandoc_3.1.3+ds-2_amd64.deb ... 635s Unpacking pandoc (3.1.3+ds-2) ... 635s Selecting previously unselected package r-cran-abind. 635s Preparing to unpack .../153-r-cran-abind_1.4-5-2_all.deb ... 635s Unpacking r-cran-abind (1.4-5-2) ... 635s Selecting previously unselected package r-cran-mass. 635s Preparing to unpack .../154-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 635s Unpacking r-cran-mass (7.3-60.0.1-1) ... 636s Selecting previously unselected package r-cran-pixmap. 636s Preparing to unpack .../155-r-cran-pixmap_0.4-12-1_all.deb ... 636s Unpacking r-cran-pixmap (0.4-12-1) ... 636s Selecting previously unselected package r-cran-lattice. 636s Preparing to unpack .../156-r-cran-lattice_0.22-5-1_amd64.deb ... 636s Unpacking r-cran-lattice (0.22-5-1) ... 636s Selecting previously unselected package r-cran-sp. 636s Preparing to unpack .../157-r-cran-sp_1%3a2.1-2+dfsg-1_amd64.deb ... 636s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 636s Selecting previously unselected package r-cran-pkgkitten. 636s Preparing to unpack .../158-r-cran-pkgkitten_0.2.3-1_all.deb ... 636s Unpacking r-cran-pkgkitten (0.2.3-1) ... 636s Selecting previously unselected package r-cran-rcpp. 636s Preparing to unpack .../159-r-cran-rcpp_1.0.12-1_amd64.deb ... 636s Unpacking r-cran-rcpp (1.0.12-1) ... 636s Selecting previously unselected package r-cran-rcpparmadillo. 636s Preparing to unpack .../160-r-cran-rcpparmadillo_0.12.8.0.0-1_amd64.deb ... 636s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 636s Selecting previously unselected package r-cran-ade4. 636s Preparing to unpack .../161-r-cran-ade4_1.7-22-1_amd64.deb ... 636s Unpacking r-cran-ade4 (1.7-22-1) ... 636s Selecting previously unselected package r-cran-kernsmooth. 636s Preparing to unpack .../162-r-cran-kernsmooth_2.23-22-1_amd64.deb ... 636s Unpacking r-cran-kernsmooth (2.23-22-1) ... 636s Selecting previously unselected package r-cran-png. 636s Preparing to unpack .../163-r-cran-png_0.1-8-1_amd64.deb ... 636s Unpacking r-cran-png (0.1-8-1) ... 636s Selecting previously unselected package r-cran-jpeg. 636s Preparing to unpack .../164-r-cran-jpeg_0.1-10-1_amd64.deb ... 636s Unpacking r-cran-jpeg (0.1-10-1) ... 636s Selecting previously unselected package r-cran-rcolorbrewer. 636s Preparing to unpack .../165-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 636s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 636s Selecting previously unselected package r-cran-deldir. 636s Preparing to unpack .../166-r-cran-deldir_2.0-4-1_amd64.deb ... 636s Unpacking r-cran-deldir (2.0-4-1) ... 636s Selecting previously unselected package r-cran-matrix. 636s Preparing to unpack .../167-r-cran-matrix_1.6-5-1_amd64.deb ... 636s Unpacking r-cran-matrix (1.6-5-1) ... 636s Selecting previously unselected package r-cran-rcppeigen. 636s Preparing to unpack .../168-r-cran-rcppeigen_0.3.3.9.4-1_amd64.deb ... 636s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 636s Selecting previously unselected package r-cran-interp. 636s Preparing to unpack .../169-r-cran-interp_1.1-6-1_amd64.deb ... 636s Unpacking r-cran-interp (1.1-6-1) ... 636s Selecting previously unselected package r-cran-latticeextra. 636s Preparing to unpack .../170-r-cran-latticeextra_0.6-30-1_all.deb ... 636s Unpacking r-cran-latticeextra (0.6-30-1) ... 636s Selecting previously unselected package r-cran-adegraphics. 636s Preparing to unpack .../171-r-cran-adegraphics_1.0-21-1_all.deb ... 636s Unpacking r-cran-adegraphics (1.0-21-1) ... 637s Selecting previously unselected package r-cran-backports. 637s Preparing to unpack .../172-r-cran-backports_1.4.1-1_amd64.deb ... 637s Unpacking r-cran-backports (1.4.1-1) ... 637s Selecting previously unselected package r-cran-base64enc. 637s Preparing to unpack .../173-r-cran-base64enc_0.1-3-3_amd64.deb ... 637s Unpacking r-cran-base64enc (0.1-3-3) ... 637s Selecting previously unselected package r-cran-bit. 637s Preparing to unpack .../174-r-cran-bit_4.0.5-1_amd64.deb ... 637s Unpacking r-cran-bit (4.0.5-1) ... 637s Selecting previously unselected package r-cran-bit64. 637s Preparing to unpack .../175-r-cran-bit64_4.0.5-1_amd64.deb ... 637s Unpacking r-cran-bit64 (4.0.5-1) ... 637s Selecting previously unselected package r-cran-boot. 637s Preparing to unpack .../176-r-cran-boot_1.3-30-1_all.deb ... 637s Unpacking r-cran-boot (1.3-30-1) ... 637s Selecting previously unselected package r-cran-brio. 637s Preparing to unpack .../177-r-cran-brio_1.1.4-1_amd64.deb ... 637s Unpacking r-cran-brio (1.1.4-1) ... 637s Selecting previously unselected package r-cran-cli. 637s Preparing to unpack .../178-r-cran-cli_3.6.2-1_amd64.deb ... 637s Unpacking r-cran-cli (3.6.2-1) ... 637s Selecting previously unselected package r-cran-generics. 637s Preparing to unpack .../179-r-cran-generics_0.1.3-1_all.deb ... 637s Unpacking r-cran-generics (0.1.3-1) ... 637s Selecting previously unselected package r-cran-glue. 637s Preparing to unpack .../180-r-cran-glue_1.7.0-1_amd64.deb ... 637s Unpacking r-cran-glue (1.7.0-1) ... 637s Selecting previously unselected package r-cran-rlang. 637s Preparing to unpack .../181-r-cran-rlang_1.1.3-1_amd64.deb ... 637s Unpacking r-cran-rlang (1.1.3-1) ... 637s Selecting previously unselected package r-cran-lifecycle. 637s Preparing to unpack .../182-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 637s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 637s Selecting previously unselected package r-cran-magrittr. 637s Preparing to unpack .../183-r-cran-magrittr_2.0.3-1_amd64.deb ... 637s Unpacking r-cran-magrittr (2.0.3-1) ... 637s Selecting previously unselected package r-cran-fansi. 637s Preparing to unpack .../184-r-cran-fansi_1.0.5-1_amd64.deb ... 637s Unpacking r-cran-fansi (1.0.5-1) ... 637s Selecting previously unselected package r-cran-utf8. 637s Preparing to unpack .../185-r-cran-utf8_1.2.4-1_amd64.deb ... 637s Unpacking r-cran-utf8 (1.2.4-1) ... 637s Selecting previously unselected package r-cran-vctrs. 637s Preparing to unpack .../186-r-cran-vctrs_0.6.5-1_amd64.deb ... 637s Unpacking r-cran-vctrs (0.6.5-1) ... 637s Selecting previously unselected package r-cran-pillar. 637s Preparing to unpack .../187-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 637s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 637s Selecting previously unselected package r-cran-r6. 637s Preparing to unpack .../188-r-cran-r6_2.5.1-1_all.deb ... 637s Unpacking r-cran-r6 (2.5.1-1) ... 637s Selecting previously unselected package r-cran-pkgconfig. 637s Preparing to unpack .../189-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 637s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 637s Selecting previously unselected package r-cran-tibble. 637s Preparing to unpack .../190-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 637s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 637s Selecting previously unselected package r-cran-withr. 637s Preparing to unpack .../191-r-cran-withr_2.5.0-1_all.deb ... 637s Unpacking r-cran-withr (2.5.0-1) ... 637s Selecting previously unselected package r-cran-tidyselect. 638s Preparing to unpack .../192-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 638s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 638s Selecting previously unselected package r-cran-dplyr. 638s Preparing to unpack .../193-r-cran-dplyr_1.1.4-1_amd64.deb ... 638s Unpacking r-cran-dplyr (1.1.4-1) ... 638s Selecting previously unselected package r-cran-ellipsis. 638s Preparing to unpack .../194-r-cran-ellipsis_0.3.2-2_amd64.deb ... 638s Unpacking r-cran-ellipsis (0.3.2-2) ... 638s Selecting previously unselected package r-cran-purrr. 638s Preparing to unpack .../195-r-cran-purrr_1.0.2-1_amd64.deb ... 638s Unpacking r-cran-purrr (1.0.2-1) ... 638s Selecting previously unselected package r-cran-stringi. 638s Preparing to unpack .../196-r-cran-stringi_1.8.3-1_amd64.deb ... 638s Unpacking r-cran-stringi (1.8.3-1) ... 638s Selecting previously unselected package r-cran-stringr. 638s Preparing to unpack .../197-r-cran-stringr_1.5.1-1_all.deb ... 638s Unpacking r-cran-stringr (1.5.1-1) ... 638s Selecting previously unselected package r-cran-cpp11. 638s Preparing to unpack .../198-r-cran-cpp11_0.4.7-1_all.deb ... 638s Unpacking r-cran-cpp11 (0.4.7-1) ... 638s Selecting previously unselected package r-cran-tidyr. 638s Preparing to unpack .../199-r-cran-tidyr_1.3.1-1_amd64.deb ... 638s Unpacking r-cran-tidyr (1.3.1-1) ... 638s Selecting previously unselected package r-cran-broom. 638s Preparing to unpack .../200-r-cran-broom_1.0.5+dfsg-1_all.deb ... 638s Unpacking r-cran-broom (1.0.5+dfsg-1) ... 638s Selecting previously unselected package r-cran-fastmap. 638s Preparing to unpack .../201-r-cran-fastmap_1.1.1-1_amd64.deb ... 638s Unpacking r-cran-fastmap (1.1.1-1) ... 638s Selecting previously unselected package r-cran-cachem. 638s Preparing to unpack .../202-r-cran-cachem_1.0.8-1_amd64.deb ... 638s Unpacking r-cran-cachem (1.0.8-1) ... 638s Selecting previously unselected package r-cran-digest. 638s Preparing to unpack .../203-r-cran-digest_0.6.34-1_amd64.deb ... 638s Unpacking r-cran-digest (0.6.34-1) ... 638s Selecting previously unselected package r-cran-htmltools. 638s Preparing to unpack .../204-r-cran-htmltools_0.5.7-1_amd64.deb ... 638s Unpacking r-cran-htmltools (0.5.7-1) ... 638s Selecting previously unselected package r-cran-jquerylib. 638s Preparing to unpack .../205-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 638s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 638s Selecting previously unselected package r-cran-jsonlite. 638s Preparing to unpack .../206-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 638s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 638s Selecting previously unselected package r-cran-memoise. 638s Preparing to unpack .../207-r-cran-memoise_2.0.1-1_all.deb ... 638s Unpacking r-cran-memoise (2.0.1-1) ... 638s Selecting previously unselected package r-cran-mime. 638s Preparing to unpack .../208-r-cran-mime_0.12-1_amd64.deb ... 638s Unpacking r-cran-mime (0.12-1) ... 638s Selecting previously unselected package r-cran-fs. 638s Preparing to unpack .../209-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 638s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 638s Selecting previously unselected package r-cran-rappdirs. 638s Preparing to unpack .../210-r-cran-rappdirs_0.3.3-1_amd64.deb ... 638s Unpacking r-cran-rappdirs (0.3.3-1) ... 638s Selecting previously unselected package r-cran-sass. 638s Preparing to unpack .../211-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 638s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 638s Selecting previously unselected package r-cran-bslib. 638s Preparing to unpack .../212-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 638s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 639s Selecting previously unselected package r-cran-ps. 639s Preparing to unpack .../213-r-cran-ps_1.7.6-1_amd64.deb ... 639s Unpacking r-cran-ps (1.7.6-1) ... 639s Selecting previously unselected package r-cran-processx. 639s Preparing to unpack .../214-r-cran-processx_3.8.3-1_amd64.deb ... 639s Unpacking r-cran-processx (3.8.3-1) ... 639s Selecting previously unselected package r-cran-callr. 639s Preparing to unpack .../215-r-cran-callr_3.7.3-2_all.deb ... 639s Unpacking r-cran-callr (3.7.3-2) ... 639s Selecting previously unselected package r-cran-cardata. 639s Preparing to unpack .../216-r-cran-cardata_3.0.5-1_all.deb ... 639s Unpacking r-cran-cardata (3.0.5-1) ... 639s Selecting previously unselected package r-cran-nlme. 639s Preparing to unpack .../217-r-cran-nlme_3.1.164-1_amd64.deb ... 639s Unpacking r-cran-nlme (3.1.164-1) ... 639s Selecting previously unselected package r-cran-mgcv. 639s Preparing to unpack .../218-r-cran-mgcv_1.9-1-1_amd64.deb ... 639s Unpacking r-cran-mgcv (1.9-1-1) ... 639s Selecting previously unselected package r-cran-nnet. 639s Preparing to unpack .../219-r-cran-nnet_7.3-19-2_amd64.deb ... 639s Unpacking r-cran-nnet (7.3-19-2) ... 639s Selecting previously unselected package r-cran-minqa. 639s Preparing to unpack .../220-r-cran-minqa_1.2.6-1_amd64.deb ... 639s Unpacking r-cran-minqa (1.2.6-1) ... 639s Selecting previously unselected package libnlopt0:amd64. 639s Preparing to unpack .../221-libnlopt0_2.7.1-5build2_amd64.deb ... 639s Unpacking libnlopt0:amd64 (2.7.1-5build2) ... 639s Selecting previously unselected package r-cran-desc. 639s Preparing to unpack .../222-r-cran-desc_1.4.3-1_all.deb ... 639s Unpacking r-cran-desc (1.4.3-1) ... 639s Selecting previously unselected package r-cran-evaluate. 639s Preparing to unpack .../223-r-cran-evaluate_0.23-1_all.deb ... 639s Unpacking r-cran-evaluate (0.23-1) ... 639s Selecting previously unselected package r-cran-crayon. 639s Preparing to unpack .../224-r-cran-crayon_1.5.2-1_all.deb ... 639s Unpacking r-cran-crayon (1.5.2-1) ... 639s Selecting previously unselected package r-cran-pkgbuild. 639s Preparing to unpack .../225-r-cran-pkgbuild_1.4.3-1_all.deb ... 639s Unpacking r-cran-pkgbuild (1.4.3-1) ... 639s Selecting previously unselected package r-cran-rprojroot. 639s Preparing to unpack .../226-r-cran-rprojroot_2.0.4-1_all.deb ... 639s Unpacking r-cran-rprojroot (2.0.4-1) ... 639s Selecting previously unselected package r-cran-pkgload. 639s Preparing to unpack .../227-r-cran-pkgload_1.3.4-1_all.deb ... 639s Unpacking r-cran-pkgload (1.3.4-1) ... 639s Selecting previously unselected package r-cran-praise. 639s Preparing to unpack .../228-r-cran-praise_1.0.0-4build1_all.deb ... 639s Unpacking r-cran-praise (1.0.0-4build1) ... 639s Selecting previously unselected package r-cran-diffobj. 639s Preparing to unpack .../229-r-cran-diffobj_0.3.5-1_amd64.deb ... 639s Unpacking r-cran-diffobj (0.3.5-1) ... 639s Selecting previously unselected package r-cran-rematch2. 639s Preparing to unpack .../230-r-cran-rematch2_2.1.2-2build1_all.deb ... 639s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 639s Selecting previously unselected package r-cran-waldo. 639s Preparing to unpack .../231-r-cran-waldo_0.5.2-1build1_all.deb ... 639s Unpacking r-cran-waldo (0.5.2-1build1) ... 639s Selecting previously unselected package r-cran-testthat. 639s Preparing to unpack .../232-r-cran-testthat_3.2.1-1_amd64.deb ... 639s Unpacking r-cran-testthat (3.2.1-1) ... 639s Selecting previously unselected package r-cran-nloptr. 639s Preparing to unpack .../233-r-cran-nloptr_2.0.3-1_amd64.deb ... 639s Unpacking r-cran-nloptr (2.0.3-1) ... 639s Selecting previously unselected package r-cran-statmod. 639s Preparing to unpack .../234-r-cran-statmod_1.5.0-1_amd64.deb ... 639s Unpacking r-cran-statmod (1.5.0-1) ... 639s Selecting previously unselected package r-cran-lme4. 639s Preparing to unpack .../235-r-cran-lme4_1.1-35.1-4_amd64.deb ... 639s Unpacking r-cran-lme4 (1.1-35.1-4) ... 640s Selecting previously unselected package r-cran-numderiv. 640s Preparing to unpack .../236-r-cran-numderiv_2016.8-1.1-3_all.deb ... 640s Unpacking r-cran-numderiv (2016.8-1.1-3) ... 640s Selecting previously unselected package r-cran-xfun. 640s Preparing to unpack .../237-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 640s Unpacking r-cran-xfun (0.41+dfsg-1) ... 640s Selecting previously unselected package r-cran-highr. 640s Preparing to unpack .../238-r-cran-highr_0.10+dfsg-1_all.deb ... 640s Unpacking r-cran-highr (0.10+dfsg-1) ... 640s Selecting previously unselected package r-cran-yaml. 640s Preparing to unpack .../239-r-cran-yaml_2.3.8-1_amd64.deb ... 640s Unpacking r-cran-yaml (2.3.8-1) ... 640s Selecting previously unselected package libjs-mathjax. 640s Preparing to unpack .../240-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 640s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 641s Selecting previously unselected package r-cran-knitr. 641s Preparing to unpack .../241-r-cran-knitr_1.45+dfsg-1_all.deb ... 641s Unpacking r-cran-knitr (1.45+dfsg-1) ... 641s Selecting previously unselected package r-cran-pbkrtest. 641s Preparing to unpack .../242-r-cran-pbkrtest_0.5.2-2_all.deb ... 641s Unpacking r-cran-pbkrtest (0.5.2-2) ... 641s Selecting previously unselected package r-cran-sparsem. 641s Preparing to unpack .../243-r-cran-sparsem_1.81-1_amd64.deb ... 641s Unpacking r-cran-sparsem (1.81-1) ... 641s Selecting previously unselected package r-cran-matrixmodels. 641s Preparing to unpack .../244-r-cran-matrixmodels_0.5-3-1_all.deb ... 641s Unpacking r-cran-matrixmodels (0.5-3-1) ... 641s Selecting previously unselected package r-cran-survival. 641s Preparing to unpack .../245-r-cran-survival_3.5-8-1_amd64.deb ... 641s Unpacking r-cran-survival (3.5-8-1) ... 641s Selecting previously unselected package r-cran-matrixstats. 641s Preparing to unpack .../246-r-cran-matrixstats_1.2.0-1_amd64.deb ... 641s Unpacking r-cran-matrixstats (1.2.0-1) ... 641s Selecting previously unselected package r-cran-gtable. 641s Preparing to unpack .../247-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 641s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 641s Selecting previously unselected package r-cran-isoband. 641s Preparing to unpack .../248-r-cran-isoband_0.2.7-1_amd64.deb ... 641s Unpacking r-cran-isoband (0.2.7-1) ... 641s Selecting previously unselected package r-cran-farver. 641s Preparing to unpack .../249-r-cran-farver_2.1.1-1_amd64.deb ... 641s Unpacking r-cran-farver (2.1.1-1) ... 641s Selecting previously unselected package r-cran-labeling. 641s Preparing to unpack .../250-r-cran-labeling_0.4.3-1_all.deb ... 641s Unpacking r-cran-labeling (0.4.3-1) ... 641s Selecting previously unselected package r-cran-colorspace. 641s Preparing to unpack .../251-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 641s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 641s Selecting previously unselected package r-cran-munsell. 641s Preparing to unpack .../252-r-cran-munsell_0.5.0-2build1_all.deb ... 641s Unpacking r-cran-munsell (0.5.0-2build1) ... 641s Selecting previously unselected package r-cran-viridislite. 641s Preparing to unpack .../253-r-cran-viridislite_0.4.2-2_all.deb ... 641s Unpacking r-cran-viridislite (0.4.2-2) ... 641s Selecting previously unselected package r-cran-scales. 641s Preparing to unpack .../254-r-cran-scales_1.3.0-1_all.deb ... 641s Unpacking r-cran-scales (1.3.0-1) ... 641s Selecting previously unselected package r-cran-ggplot2. 641s Preparing to unpack .../255-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 641s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 642s Selecting previously unselected package r-cran-class. 642s Preparing to unpack .../256-r-cran-class_7.3-22-2_amd64.deb ... 642s Unpacking r-cran-class (7.3-22-2) ... 642s Selecting previously unselected package r-cran-proxy. 642s Preparing to unpack .../257-r-cran-proxy_0.4-27-1_amd64.deb ... 642s Unpacking r-cran-proxy (0.4-27-1) ... 642s Selecting previously unselected package r-cran-e1071. 642s Preparing to unpack .../258-r-cran-e1071_1.7-14-1_amd64.deb ... 642s Unpacking r-cran-e1071 (1.7-14-1) ... 642s Selecting previously unselected package r-cran-codetools. 642s Preparing to unpack .../259-r-cran-codetools_0.2-19-1_all.deb ... 642s Unpacking r-cran-codetools (0.2-19-1) ... 642s Selecting previously unselected package r-cran-iterators. 642s Preparing to unpack .../260-r-cran-iterators_1.0.14-1_all.deb ... 642s Unpacking r-cran-iterators (1.0.14-1) ... 642s Selecting previously unselected package r-cran-foreach. 642s Preparing to unpack .../261-r-cran-foreach_1.5.2-1_all.deb ... 642s Unpacking r-cran-foreach (1.5.2-1) ... 642s Selecting previously unselected package r-cran-data.table. 642s Preparing to unpack .../262-r-cran-data.table_1.14.10+dfsg-1_amd64.deb ... 642s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 642s Selecting previously unselected package r-cran-modelmetrics. 642s Preparing to unpack .../263-r-cran-modelmetrics_1.2.2.2-1build1_amd64.deb ... 642s Unpacking r-cran-modelmetrics (1.2.2.2-1build1) ... 642s Selecting previously unselected package r-cran-plyr. 642s Preparing to unpack .../264-r-cran-plyr_1.8.9-1_amd64.deb ... 642s Unpacking r-cran-plyr (1.8.9-1) ... 642s Selecting previously unselected package r-cran-proc. 642s Preparing to unpack .../265-r-cran-proc_1.18.5-1_amd64.deb ... 642s Unpacking r-cran-proc (1.18.5-1) ... 642s Selecting previously unselected package r-cran-tzdb. 642s Preparing to unpack .../266-r-cran-tzdb_0.4.0-2_amd64.deb ... 642s Unpacking r-cran-tzdb (0.4.0-2) ... 642s Selecting previously unselected package r-cran-clock. 642s Preparing to unpack .../267-r-cran-clock_0.7.0-1.1_amd64.deb ... 642s Unpacking r-cran-clock (0.7.0-1.1) ... 642s Selecting previously unselected package r-cran-gower. 642s Preparing to unpack .../268-r-cran-gower_1.0.1-1_amd64.deb ... 642s Unpacking r-cran-gower (1.0.1-1) ... 642s Selecting previously unselected package r-cran-hardhat. 642s Preparing to unpack .../269-r-cran-hardhat_1.3.1+dfsg-1_all.deb ... 642s Unpacking r-cran-hardhat (1.3.1+dfsg-1) ... 642s Selecting previously unselected package r-cran-rpart. 642s Preparing to unpack .../270-r-cran-rpart_4.1.23-1_amd64.deb ... 642s Unpacking r-cran-rpart (4.1.23-1) ... 642s Selecting previously unselected package r-cran-shape. 642s Preparing to unpack .../271-r-cran-shape_1.4.6-1_all.deb ... 642s Unpacking r-cran-shape (1.4.6-1) ... 642s Selecting previously unselected package r-cran-diagram. 642s Preparing to unpack .../272-r-cran-diagram_1.6.5-2_all.deb ... 642s Unpacking r-cran-diagram (1.6.5-2) ... 642s Selecting previously unselected package r-cran-globals. 642s Preparing to unpack .../273-r-cran-globals_0.16.2-1_all.deb ... 642s Unpacking r-cran-globals (0.16.2-1) ... 642s Selecting previously unselected package r-cran-listenv. 642s Preparing to unpack .../274-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 642s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 642s Selecting previously unselected package r-cran-parallelly. 642s Preparing to unpack .../275-r-cran-parallelly_1.37.1-1_amd64.deb ... 642s Unpacking r-cran-parallelly (1.37.1-1) ... 642s Selecting previously unselected package r-cran-future. 642s Preparing to unpack .../276-r-cran-future_1.33.1+dfsg-1_all.deb ... 642s Unpacking r-cran-future (1.33.1+dfsg-1) ... 642s Selecting previously unselected package r-cran-future.apply. 642s Preparing to unpack .../277-r-cran-future.apply_1.11.1+dfsg-1_all.deb ... 642s Unpacking r-cran-future.apply (1.11.1+dfsg-1) ... 642s Selecting previously unselected package r-cran-progressr. 642s Preparing to unpack .../278-r-cran-progressr_0.14.0-1_all.deb ... 642s Unpacking r-cran-progressr (0.14.0-1) ... 642s Selecting previously unselected package r-cran-squarem. 643s Preparing to unpack .../279-r-cran-squarem_2021.1-1_all.deb ... 643s Unpacking r-cran-squarem (2021.1-1) ... 643s Selecting previously unselected package r-cran-lava. 643s Preparing to unpack .../280-r-cran-lava_1.7.3+dfsg-1_all.deb ... 643s Unpacking r-cran-lava (1.7.3+dfsg-1) ... 643s Selecting previously unselected package r-cran-prodlim. 643s Preparing to unpack .../281-r-cran-prodlim_2023.08.28-1_amd64.deb ... 643s Unpacking r-cran-prodlim (2023.08.28-1) ... 643s Selecting previously unselected package r-cran-ipred. 643s Preparing to unpack .../282-r-cran-ipred_0.9-14-1_amd64.deb ... 643s Unpacking r-cran-ipred (0.9-14-1) ... 643s Selecting previously unselected package r-cran-timechange. 643s Preparing to unpack .../283-r-cran-timechange_0.3.0-1_amd64.deb ... 643s Unpacking r-cran-timechange (0.3.0-1) ... 643s Selecting previously unselected package r-cran-lubridate. 643s Preparing to unpack .../284-r-cran-lubridate_1.9.3+dfsg-1_amd64.deb ... 643s Unpacking r-cran-lubridate (1.9.3+dfsg-1) ... 643s Selecting previously unselected package r-cran-timedate. 643s Preparing to unpack .../285-r-cran-timedate_4032.109-1_amd64.deb ... 643s Unpacking r-cran-timedate (4032.109-1) ... 643s Selecting previously unselected package r-cran-recipes. 643s Preparing to unpack .../286-r-cran-recipes_1.0.9+dfsg-1_all.deb ... 643s Unpacking r-cran-recipes (1.0.9+dfsg-1) ... 643s Selecting previously unselected package r-cran-reshape2. 643s Preparing to unpack .../287-r-cran-reshape2_1.4.4-2build1_amd64.deb ... 643s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 643s Selecting previously unselected package r-cran-caret. 643s Preparing to unpack .../288-r-cran-caret_6.0-94+dfsg-1_amd64.deb ... 643s Unpacking r-cran-caret (6.0-94+dfsg-1) ... 643s Selecting previously unselected package r-cran-conquer. 643s Preparing to unpack .../289-r-cran-conquer_1.3.3-1_amd64.deb ... 643s Unpacking r-cran-conquer (1.3.3-1) ... 643s Selecting previously unselected package r-cran-quantreg. 643s Preparing to unpack .../290-r-cran-quantreg_5.97-1_amd64.deb ... 643s Unpacking r-cran-quantreg (5.97-1) ... 643s Selecting previously unselected package r-cran-foreign. 643s Preparing to unpack .../291-r-cran-foreign_0.8.86-1_amd64.deb ... 643s Unpacking r-cran-foreign (0.8.86-1) ... 643s Selecting previously unselected package r-cran-maptools. 643s Preparing to unpack .../292-r-cran-maptools_1%3a1.1-8+dfsg-1_amd64.deb ... 643s Unpacking r-cran-maptools (1:1.1-8+dfsg-1) ... 643s Selecting previously unselected package r-cran-forcats. 643s Preparing to unpack .../293-r-cran-forcats_1.0.0-1_all.deb ... 643s Unpacking r-cran-forcats (1.0.0-1) ... 643s Selecting previously unselected package r-cran-hms. 643s Preparing to unpack .../294-r-cran-hms_1.1.3-1_all.deb ... 643s Unpacking r-cran-hms (1.1.3-1) ... 643s Selecting previously unselected package r-cran-clipr. 643s Preparing to unpack .../295-r-cran-clipr_0.8.0-1_all.deb ... 643s Unpacking r-cran-clipr (0.8.0-1) ... 643s Selecting previously unselected package r-cran-prettyunits. 643s Preparing to unpack .../296-r-cran-prettyunits_1.2.0-1_all.deb ... 643s Unpacking r-cran-prettyunits (1.2.0-1) ... 643s Selecting previously unselected package r-cran-progress. 643s Preparing to unpack .../297-r-cran-progress_1.2.3-1_all.deb ... 643s Unpacking r-cran-progress (1.2.3-1) ... 643s Selecting previously unselected package r-cran-vroom. 643s Preparing to unpack .../298-r-cran-vroom_1.6.5-1_amd64.deb ... 643s Unpacking r-cran-vroom (1.6.5-1) ... 643s Selecting previously unselected package r-cran-readr. 643s Preparing to unpack .../299-r-cran-readr_2.1.5-1_amd64.deb ... 643s Unpacking r-cran-readr (2.1.5-1) ... 643s Selecting previously unselected package r-cran-haven. 643s Preparing to unpack .../300-r-cran-haven_2.5.4-1_amd64.deb ... 643s Unpacking r-cran-haven (2.5.4-1) ... 643s Selecting previously unselected package r-cran-curl. 643s Preparing to unpack .../301-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 643s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 644s Selecting previously unselected package r-cran-rematch. 644s Preparing to unpack .../302-r-cran-rematch_2.0.0-1_all.deb ... 644s Unpacking r-cran-rematch (2.0.0-1) ... 644s Selecting previously unselected package r-cran-cellranger. 644s Preparing to unpack .../303-r-cran-cellranger_1.1.0-3_all.deb ... 644s Unpacking r-cran-cellranger (1.1.0-3) ... 644s Selecting previously unselected package r-cran-readxl. 644s Preparing to unpack .../304-r-cran-readxl_1.4.3-1_amd64.deb ... 644s Unpacking r-cran-readxl (1.4.3-1) ... 644s Selecting previously unselected package r-cran-writexl. 644s Preparing to unpack .../305-r-cran-writexl_1.5.0-1_amd64.deb ... 644s Unpacking r-cran-writexl (1.5.0-1) ... 644s Selecting previously unselected package r-cran-r.methodss3. 644s Preparing to unpack .../306-r-cran-r.methodss3_1.8.2-1_all.deb ... 644s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 644s Selecting previously unselected package r-cran-r.oo. 644s Preparing to unpack .../307-r-cran-r.oo_1.26.0-1_all.deb ... 644s Unpacking r-cran-r.oo (1.26.0-1) ... 644s Selecting previously unselected package r-cran-r.utils. 644s Preparing to unpack .../308-r-cran-r.utils_2.12.3-1_all.deb ... 644s Unpacking r-cran-r.utils (2.12.3-1) ... 644s Selecting previously unselected package r-cran-zip. 644s Preparing to unpack .../309-r-cran-zip_2.3.1-1_amd64.deb ... 644s Unpacking r-cran-zip (2.3.1-1) ... 644s Selecting previously unselected package r-cran-openxlsx. 644s Preparing to unpack .../310-r-cran-openxlsx_4.2.5.2-1_amd64.deb ... 644s Unpacking r-cran-openxlsx (4.2.5.2-1) ... 644s Selecting previously unselected package r-cran-rio. 644s Preparing to unpack .../311-r-cran-rio_1.0.1-1_all.deb ... 644s Unpacking r-cran-rio (1.0.1-1) ... 644s Selecting previously unselected package r-cran-car. 644s Preparing to unpack .../312-r-cran-car_3.1-2-2_all.deb ... 644s Unpacking r-cran-car (3.1-2-2) ... 644s Selecting previously unselected package r-cran-classint. 644s Preparing to unpack .../313-r-cran-classint_0.4-10+dfsg-1_amd64.deb ... 644s Unpacking r-cran-classint (0.4-10+dfsg-1) ... 644s Selecting previously unselected package r-cran-commonmark. 644s Preparing to unpack .../314-r-cran-commonmark_1.9.1-1_amd64.deb ... 644s Unpacking r-cran-commonmark (1.9.1-1) ... 644s Selecting previously unselected package r-cran-dbi. 644s Preparing to unpack .../315-r-cran-dbi_1.2.2-1_all.deb ... 644s 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649s Setting up r-cran-shape (1.4.6-1) ... 649s Setting up r-cran-fastmap (1.1.1-1) ... 649s Setting up r-cran-png (0.1-8-1) ... 649s Setting up r-cran-r.methodss3 (1.8.2-1) ... 649s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 649s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 649s Setting up r-cran-sp (1:2.1-2+dfsg-1) ... 649s Setting up r-cran-utf8 (1.2.4-1) ... 649s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 649s Setting up r-cran-parallelly (1.37.1-1) ... 649s Setting up r-cran-stringi (1.8.3-1) ... 649s Setting up r-cran-spdata (2.3.0-1) ... 649s Setting up r-cran-markdown (1.12+dfsg-1) ... 649s Setting up r-cran-cpp11 (0.4.7-1) ... 649s Setting up r-cran-plyr (1.8.9-1) ... 649s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 649s Setting up r-cran-isoband (0.2.7-1) ... 649s Setting up r-cran-diagram (1.6.5-2) ... 649s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 649s Setting up r-cran-units (0.8-5+dfsg-1) ... 649s Setting up r-cran-later (1.3.2+dfsg-1) ... 649s Setting up r-cran-matrix (1.6-5-1) ... 649s Setting up r-cran-tinytex (0.49-1) ... 649s Setting up r-cran-kernsmooth (2.23-22-1) ... 649s Setting up r-cran-knitr (1.45+dfsg-1) ... 649s Setting up r-cran-mgcv (1.9-1-1) ... 649s Setting up g++ (4:13.2.0-7ubuntu1) ... 649s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 649s Setting up r-cran-cachem (1.0.8-1) ... 649s Setting up build-essential (12.10ubuntu1) ... 649s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ... 649s Setting up r-cran-tzdb (0.4.0-2) ... 649s Setting up r-cran-globals (0.16.2-1) ... 649s Setting up r-cran-maptools (1:1.1-8+dfsg-1) ... 649s Setting up r-cran-vctrs (0.6.5-1) ... 649s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 649s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 649s Setting up r-cran-ellipsis (0.3.2-2) ... 649s Setting up r-cran-minqa (1.2.6-1) ... 649s Setting up r-cran-stringr (1.5.1-1) ... 649s Setting up r-cran-class (7.3-22-2) ... 649s Setting up r-cran-modelmetrics (1.2.2.2-1build1) ... 649s Setting up r-cran-callr (3.7.3-2) ... 649s Setting up r-cran-openxlsx (4.2.5.2-1) ... 649s Setting up r-cran-matrixmodels (0.5-3-1) ... 649s Setting up r-cran-desc (1.4.3-1) ... 649s Setting up r-cran-munsell (0.5.0-2build1) ... 649s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 649s Setting up r-cran-clock (0.7.0-1.1) ... 649s Setting up r-cran-proc (1.18.5-1) ... 649s Setting up r-cran-survival (3.5-8-1) ... 649s Setting up r-cran-r.oo (1.26.0-1) ... 649s Setting up r-cran-ade4 (1.7-22-1) ... 649s Setting up r-cran-future (1.33.1+dfsg-1) ... 649s Setting up r-cran-forcats (1.0.0-1) ... 649s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 649s Setting up r-cran-reshape2 (1.4.4-2build1) ... 649s Setting up r-cran-interp (1.1-6-1) ... 649s Setting up r-cran-future.apply (1.11.1+dfsg-1) ... 649s Setting up r-cran-timechange (0.3.0-1) ... 649s Setting up r-cran-hms (1.1.3-1) ... 649s Setting up r-cran-scales (1.3.0-1) ... 649s Setting up r-cran-memoise (2.0.1-1) ... 649s Setting up r-cran-lava (1.7.3+dfsg-1) ... 649s Setting up r-cran-promises (1.2.1+dfsg-1) ... 649s Setting up r-cran-purrr (1.0.2-1) ... 649s Setting up r-cran-e1071 (1.7-14-1) ... 649s Setting up r-cran-htmltools (0.5.7-1) ... 649s Setting up r-cran-pkgbuild (1.4.3-1) ... 649s Setting up r-cran-hardhat (1.3.1+dfsg-1) ... 649s Setting up r-cran-sass (0.4.8+dfsg-1) ... 649s Setting up r-cran-dplyr (1.1.4-1) ... 649s Setting up r-cran-progress (1.2.3-1) ... 649s Setting up r-cran-lubridate (1.9.3+dfsg-1) ... 649s Setting up r-cran-pkgload (1.3.4-1) ... 649s Setting up r-cran-r.utils (2.12.3-1) ... 649s Setting up r-cran-vroom (1.6.5-1) ... 649s Setting up r-cran-prodlim (2023.08.28-1) ... 649s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 649s Setting up r-cran-cellranger (1.1.0-3) ... 649s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 649s Setting up r-cran-rematch2 (2.1.2-2build1) ... 649s Setting up r-cran-rpart (4.1.23-1) ... 649s Setting up r-cran-fontawesome (0.5.2-1) ... 649s Setting up r-cran-latticeextra (0.6-30-1) ... 649s Setting up r-cran-ipred (0.9-14-1) ... 649s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 649s Setting up r-cran-classint (0.4-10+dfsg-1) ... 649s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 649s Setting up r-cran-readr (2.1.5-1) ... 649s Setting up r-cran-waldo (0.5.2-1build1) ... 649s Setting up r-cran-tidyr (1.3.1-1) ... 649s Setting up r-cran-recipes (1.0.9+dfsg-1) ... 649s Setting up r-cran-readxl (1.4.3-1) ... 649s Setting up r-cran-haven (2.5.4-1) ... 649s Setting up r-cran-adegraphics (1.0-21-1) ... 649s Setting up r-cran-caret (6.0-94+dfsg-1) ... 649s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 649s Setting up r-cran-testthat (3.2.1-1) ... 649s Setting up r-cran-broom (1.0.5+dfsg-1) ... 649s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 649s Setting up r-cran-conquer (1.3.3-1) ... 649s Setting up r-cran-rio (1.0.1-1) ... 649s Setting up r-cran-nloptr (2.0.3-1) ... 649s Setting up r-cran-quantreg (5.97-1) ... 649s Setting up r-cran-lme4 (1.1-35.1-4) ... 649s Setting up r-cran-pbkrtest (0.5.2-2) ... 649s Setting up r-cran-car (3.1-2-2) ... 649s Setting up libheif-plugin-dav1d:amd64 (1.17.6-1ubuntu1) ... 649s Setting up libheif-plugin-libde265:amd64 (1.17.6-1ubuntu1) ... 649s Setting up libheif1:amd64 (1.17.6-1ubuntu1) ... 649s Setting up libgdal34:amd64 (3.8.4+dfsg-1) ... 649s Setting up r-cran-sf (1.0-15+dfsg-1) ... 649s Setting up r-cran-spdep (1.3-1+dfsg-1) ... 649s Processing triggers for install-info (7.1-3) ... 649s Processing triggers for libc-bin (2.39-0ubuntu2) ... 649s Processing triggers for man-db (2.12.0-3) ... 655s Reading package lists... 655s Building dependency tree... 655s Reading state information... 656s Starting pkgProblemResolver with broken count: 0 656s Starting 2 pkgProblemResolver with broken count: 0 656s Done 656s The following NEW packages will be installed: 656s autopkgtest-satdep 656s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 656s Need to get 0 B/704 B of archives. 656s After this operation, 0 B of additional disk space will be used. 656s Get:1 /tmp/autopkgtest.OnMooF/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [704 B] 657s Selecting previously unselected package autopkgtest-satdep. 657s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 100403 files and directories currently installed.) 657s Preparing to unpack .../2-autopkgtest-satdep.deb ... 657s Unpacking autopkgtest-satdep (0) ... 657s Setting up autopkgtest-satdep (0) ... 658s (Reading database ... 100403 files and directories currently installed.) 658s Removing autopkgtest-satdep (0) ... 659s autopkgtest [05:37:13]: test run-unit-test: [----------------------- 659s 659s R version 4.3.2 (2023-10-31) -- "Eye Holes" 659s Copyright (C) 2023 The R Foundation for Statistical Computing 659s Platform: x86_64-pc-linux-gnu (64-bit) 659s 659s R is free software and comes with ABSOLUTELY NO WARRANTY. 659s You are welcome to redistribute it under certain conditions. 659s Type 'license()' or 'licence()' for distribution details. 659s 659s R is a collaborative project with many contributors. 659s Type 'contributors()' for more information and 659s 'citation()' on how to cite R or R packages in publications. 659s 659s Type 'demo()' for some demos, 'help()' for on-line help, or 659s 'help.start()' for an HTML browser interface to help. 659s Type 'q()' to quit R. 659s 659s > library(adegraphics) 659s Registered S3 methods overwritten by 'adegraphics': 659s method from 659s biplot.dudi ade4 659s kplot.foucart ade4 659s kplot.mcoa ade4 659s kplot.mfa ade4 659s kplot.pta ade4 659s kplot.sepan ade4 659s kplot.statis ade4 659s scatter.coa ade4 659s scatter.dudi ade4 659s scatter.nipals ade4 659s scatter.pco ade4 659s score.acm ade4 659s score.mix ade4 659s score.pca ade4 659s screeplot.dudi ade4 659s > pdf("add.pdf") 659s > set.seed(40) 659s > 659s > ########################### add.ADEg ############################## 659s > 659s > data(granulo, package = "ade4") 659s > df <- data.frame(t(apply(granulo$tab, 1, function(x) x / sum(x)))) 659s > pca <- ade4::dudi.pca(df, scal = FALSE, scan = FALSE) 659s > 659s > g1 <- s.arrow(ade4::dudi.pca(data.frame(df), scan = F, nf = 2)$co) 660s > g2 <- s.label(pca$li, plabels.cex = 0.5, plabels.col = "blue", plot = F) 660s > g3 <- add.ADEg(g2) 660s > g4 <- s.label(pca$c1, plabels.col = "red", add = T) 660s > 660s > g5 <- s.arrow(pca$c1, plabels.cex = 1.5, plot = FALSE) 660s > g6 <- ADEgS(list(g1 = g1, g5 = g5), layout = c(1, 2)) 660s > update(g6, pback.col = "lightblue", g1.plabels.cex = 2, g5.plabels.col = "red") 660s > 660s > 660s > ############################## addhist ############################## 660s > dfxy1 <- matrix(rnorm(200), ncol = 2) 660s > gh1 <- s.label(dfxy1) 660s > gh2 <- addhist(gh1) 660s > 660s > dfxy2 <- dfxy1 660s > dfxy2[, 2] <- dfxy2[, 2] + rnorm(100, 2) 660s > gh3 <- s.label(dfxy2) 660s > gh4 <- addhist(gh3, plot.polygon = list(col = "red")) 660s > 660s > data(rpjdl, package = "ade4") 660s > coa1 <- ade4::dudi.coa(rpjdl$fau, scannf = FALSE, nf = 4) 660s > gh5 <- s.label(coa1$li) 660s > gh6 <- addhist(gh5) 661s > 661s > 661s > ############################## addtext ############################## 661s > # on a ADEg 661s > addtext(g1, -1, 1, "Data Granulo", plabels.cex = 1.5, plabels.col = "red") 661s > addtext(g1, -1, 1, c("Data", "Granulo"), plabels.cex = 1.5, plabels.col = c("red", "blue")) # the two labels are superposed 661s > addtext(g1, -1, 1, c("Data", "Granulo"), plabels.cex = 1.5, plabels.col = "red") # the two labels are superposed 661s > 661s > addtext(g1, c(-1, -0.5), 1, "Data Granulo", plabels.cex = 1.5, plabels.col = c("red", "blue")) 661s > addtext(g1, c(-1, -0.5), 1, c("Data", "Granulo"), plabels.cex = 1.5, plabels.col = c("red", "blue")) 661s > 661s > addtext(g1, -1, c(1, 0.9), c("Data", "Granulo"), plabels.cex = 1.5, plabels.col = "red") 661s > addtext(g1, -1, c(1, 0.9), c("Data", "Granulo"), plabels.cex = c(1.5, 2), plabels.col = "red") 661s > 661s > data(dunedata, package = "ade4") 661s > afc1 <- ade4::dudi.coa(dunedata$veg, scannf = FALSE) 661s > g7 <- table.value(dunedata$veg, symbol = "circle", ppoints.cex = 0.5, plot = FALSE) 661s > addtext(g7, 1, 20, "A", plabels.srt = 45, plabels.boxes.draw = FALSE) 661s > 661s > # on a ADEgS: juxtaposition 661s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = "blue", which = 1) 661s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = c("blue", "green"), which = 2) 661s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = c("green4", "blue"), which = 2) 661s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = "blue", which = 1:2) 662s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = c("green4", "blue")) 662s > addtext(g6, c(0.7, -0.5), c(0.2, -0.4), "Text added", plabels.col = "blue", plabels.cex = 1.2, which = 1:2) 662s > addtext(g6, c(0.7, -0.5), c(0.2, -0.4), "Text added", plabels.cex = c(0.5, 1.5), plabels.col = c("blue", "green4")) 662s > 662s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, 0.5)) 662s > fac2 <- factor(xy2$x > 0) 662s > g9 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, plot = FALSE) 662s > addtext(g9, 0, 0, "A", plabels.col = "red", plabels.cex = 2) 662s > addtext(g9, c(-2.1, -1.07), c(2, 1), c("A", "B"), plabels.col ="red", plabels.cex = 2, which = 1:2) 662s > addtext(g9, c(-2.1, -1.07), c(2, 1), c("A", "B"), plabels.col = c("green4", "red"), plabels.cex = c(3, 2), which = 1:2) 662s > 662s > # on a ADEgS: facets 662s > xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 662s > posi <- factor(xy$x > 0) : factor(xy$y > 0) 662s > g10 <- s.class(xy, fac = posi, facets = posi, pellipses.col = 1:4, plabels.cex = 0, plegend.drawKey = FALSE, psub.cex = 0, plot = FALSE) 662s > addtext(g10, c(0.5, 0.5, -0.5, -0.5), c(0.5, -0.5), levels(posi), plabels.cex = 2, plabels.col = 1:4) 663s > 663s > 663s > ############################## addline ############################## 663s > # on a 2D plot 663s > g11 <- s.label(cbind(rnorm(100), rnorm(100)), plot = FALSE) 663s > addline(g11, 0, 1, plines = list(col = "red", lwd = 2, lty = 2)) 663s > addline(g11, h = 1, plines.col = "chartreuse4", plines.lwd = 3) 663s > addline(g11, v = c(-1, 1), plines.col = "cadetblue", plines.lwd = 3) 663s > 663s > # on a 1D plot 663s > g12 <- s1d.label(rnorm(10), plot = FALSE) 663s > addline(g12, v = 1, plines.col = "chartreuse4", plines.lwd = 3) 663s > 663s > # on a ADEgS: juxtaposition 663s > g13 <- ADEgS(c(g11, g11), plot = FALSE) 663s > addline(g13, 0, 1, which = 1, plines.col = "red") 663s > addline(g13, 0, 1, which = 2, plines.col = "red") 663s > addline(g13, 0, 1, which = 1:2, plines.col = "red") 663s > addline(g13, 0, 1, plines.col = "red") 663s > addline(g13, h = 1, plines.col = "red") 663s > addline(g13, h = c(1, -1), plines.col = "red") 663s > addline(g13, v = c(-1, 1), plines.col = "red") 663s > addline(g13, v = c(-1, 1), plines.col = 2:3) 663s > addline(g13, c(0.7, -0.5), c(0.2, -0.4), which = 1:2, plines.col = "red") 663s > addline(g13, c(0.7, -0.5), c(0.2, -0.4), which = 1, plines.col = "red") 663s > addline(g13, 0.7, 0.2, which = 1, plines.col = "red") 664s > addline(g13, 0.7, -0.5, which = 1, plines.col = "red") 664s > 664s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, 0.5)) 664s > fac2 <- factor(xy2$x > 0) 664s > g9 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, plot = FALSE) 664s > addline(g9, 1, 0, "A", plines.col = "red", plabels.cex = 2) 664s Warning messages: 664s 1: In panel.abline(a = a, b = b, h = h, v = v, lwd = params$lwd, lty = params$lty, : 664s NAs introduced by coercion 664s 2: In panel.abline(a = a, b = b, h = h, v = v, lwd = params$lwd, lty = params$lty, : 664s NAs introduced by coercion 664s > addline(g9, c(-2.1, -1.07), c(2, 1), plines.col ="red", which = 1:2) 664s > addline(g9, c(-2.1, -1.07), c(2, 1), plines.col = c("green4", "red")) 664s > 664s > # on a ADEgS: facets 664s > xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 664s > posi <- factor(xy$x > 0) : factor(xy$y > 0) 664s > g10 <- s.class(xy, fac = posi, facets = posi, pellipses.col = 1:4, plabels.cex = 0, plegend.drawKey = FALSE, psub.cex = 0, plot = FALSE) 664s > addline(g10, 0, c(0.5, -0.5), plines.col = 1:4) 664s > 664s > 664s > ############################## addpoint ############################## 664s > # on a 2D plot 664s > g11 <- s.label(cbind(rnorm(100), rnorm(100)), ylab = "y axis label", 664s + paxes.draw = TRUE, plot = FALSE) 664s > addpoint(g11, 2, 2, ppoints.col = "coral", ppoints.pch = "*", ppoints.cex = 4) 664s > addpoint(g11, c(1, 2), c(1, 2), ppoints.col = "brown2") 664s > addpoint(g11, 1, c(1, 2), ppoints.col = "cyan3") 664s > 664s > # on a 1D plot 664s > g12 <- s1d.density(rnorm(1000), paxes.draw = TRUE, plot = FALSE) 664s > addpoint(g12, 2, 0, ppoints.col = "brown4", ppoints.cex = 3) 664s > 664s > g12 <- s1d.density(rnorm(1000), plot = FALSE, ylab = "y axis label") 664s > addpoint(g12, 2, 0, ppoints.col = "brown4", ppoints.cex = 3) 664s > 664s > # on a ADEgS: juxtaposition 664s > g13 <- ADEgS(c(g11, g11), plot = FALSE) 664s > addpoint(g13, 2, 2, which = 1, ppoints.col = "cyan3") 665s > addpoint(g13, 2, 2, which = 2, ppoints.col = "cyan3") 665s > addpoint(g13, 2, 2, which = 1:2, ppoints.col = "cyan3") 665s > addpoint(g13, 2, 2, ppoints.col = "cyan3") 665s > addpoint(g13, c(1, 2), 2, ppoints.col = "cyan3") 665s > addpoint(g13, 2, c(1, 2), ppoints.col = "cyan3") 665s > 665s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, 0.5)) 665s > fac2 <- factor(xy2$x > 0) 665s > g9 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, plot = FALSE) 665s > addpoint(g9, 1, 0, ppoints.col = "red", ppoints.cex = 2) 665s > addpoint(g9, c(1, -1), 0, ppoints.col = "red", ppoints.cex = 2) 665s > addpoint(g9, 0, c(1, -1), ppoints.col = "red", ppoints.cex = 2) 665s > 665s > # on a ADEgS: facets 665s > xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 665s > posi <- factor(xy$x > 0) : factor(xy$y > 0) 665s > g10 <- s.class(xy, fac = posi, facets = posi, pellipses.col = 1:4, plabels.cex = 0, plegend.drawKey = FALSE, psub.cex = 0, plot = FALSE) 665s > addpoint(g10, 0, c(0.5, -0.5), ppoints.col = 1:4, ppoints.cex = 3) 666s > 666s > 666s > ############################## addsegment ############################## 666s > # on a 2D plot 666s > g11 <- s.label(cbind(rnorm(100), rnorm(100)), paxes.draw = TRUE, plot = FALSE) 666s > addsegment(g11, 0, 2, 0, -2, plines = list(col = "brown2", lwd = 3, lty = 2)) 666s > addsegment(g11, c(0, 1), 2, 0, -2, plines = list(col = "brown2", lwd = 3, lty = 2)) 666s > addsegment(g11, c(0, 1), 2, c(0, 1), -2, plines = list(col = c("cyan3", "brown2"), lwd = 3, lty = 2)) 666s > addsegment(g11, -2, -2, 2, 2, plines = list(col = "brown2", lwd = 3, lty = 2)) 666s > addsegment(g11, -2, 2, 2, -2, plines = list(col = "cyan3", lwd = 3, lty = 2)) 666s > 666s > g12 <- s.label(cbind(rnorm(100), rnorm(100)), ylab = "y axis label", plot = FALSE) 666s > addsegment(g12, 0, 2, 0, -2, plines = list(col = "brown2", lwd = 3, lty = 2)) 666s > addsegment(g12, -2, -2, 2, 2, plines = list(col = "brown2", lwd = 3, lty = 2)) 666s > addsegment(g12, -2, 2, 2, -2, plines = list(col = "cyan3", lwd = 3, lty = 2)) 666s > 666s > # on a 1D plot 666s > g13 <- s1d.density(rnorm(1000), paxes.draw = TRUE, ylab = "ylab", plot = FALSE) 666s > addsegment(g13, 2, 0, 2, 0.2, plines.col = 1, plines.lwd = 3) 666s > 666s > # on a ADEgS: juxtaposition 666s > g14 <- ADEgS(c(g11, g11), plot = FALSE) 666s > addsegment(g14, 1, 2, 1, -2, which = 1, plines.col = "brown2") 666s > addsegment(g14, 1, 2, 1, -2, which = 2, plines.col = "brown2") 666s > addsegment(g14, c(0, 1), 2, c(0, 1), -2, which = 1:2, plines.col = "brown2") 666s > addsegment(g14, 1, 2, c(0, 1), -2, which = 1:2, plines.col = "brown2") 666s > addsegment(g14, 1, 2, 1, -2, plines.col = "brown2") 667s > 667s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, 0.5)) 667s > fac2 <- factor(xy2$x > 0) 667s > g9 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, plot = FALSE) 667s > addsegment(g9, 1, 0, 1, 0.5, plines.col = "red", plines.lwd = 2) 667s > addsegment(g9, 1, -1, 0, 1, plines.col = "red", plines.lwd = 2) 667s > addsegment(g9, 0, 1, -1, 1, plines.col = "red", plines.lwd = 2) 667s > 667s > # on a ADEgS: facets 667s > xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 667s > posi <- factor(xy$x > 0) : factor(xy$y > 0) 667s > g10 <- s.class(xy, fac = posi, facets = posi, pellipses.col = 1:4, plabels.cex = 0, plegend.drawKey = FALSE, psub.cex = 0, plot = FALSE) 667s > addsegment(g10, c(-0.5, 0.5), c(0.5, -0.5), c(-0.5, 0.5), 1, plines.col = 1:4, plines.lwd = 3) 667s > 667s 667s R version 4.3.2 (2023-10-31) -- "Eye Holes" 667s Copyright (C) 2023 The R Foundation for Statistical Computing 667s Platform: x86_64-pc-linux-gnu (64-bit) 667s 667s R is free software and comes with ABSOLUTELY NO WARRANTY. 667s You are welcome to redistribute it under certain conditions. 667s Type 'license()' or 'licence()' for distribution details. 667s 667s R is a collaborative project with many contributors. 667s Type 'contributors()' for more information and 667s 'citation()' on how to cite R or R packages in publications. 667s 667s Type 'demo()' for some demos, 'help()' for on-line help, or 667s 'help.start()' for an HTML browser interface to help. 667s Type 'q()' to quit R. 667s 667s > ## delete/remove this file when 'scatter' functions will be removed in ade4 667s > 667s > library(adegraphics) 668s Registered S3 methods overwritten by 'adegraphics': 668s method from 668s biplot.dudi ade4 668s kplot.foucart ade4 668s kplot.mcoa ade4 668s kplot.mfa ade4 668s kplot.pta ade4 668s kplot.sepan ade4 668s kplot.statis ade4 668s scatter.coa ade4 668s scatter.dudi ade4 668s scatter.nipals ade4 668s scatter.pco ade4 668s score.acm ade4 668s score.mix ade4 668s score.pca ade4 668s screeplot.dudi ade4 668s > pdf("ade4-functions.pdf") 668s > 668s > ##################### scatter.dudi 668s > data(deug, package = "ade4") 668s > dd1 <- ade4::dudi.pca(deug$tab, scannf = FALSE, nf = 4) 668s > scatter(dd1, posieig = "bottomright") 668s > scatter(dd1, posieig = "bottomright", plot = T, prop = TRUE) 669s > scatter(dd1, posieig = "none", plot = T) 669s > scatter(dd1, posieig = "bottomleft", plot = T) 669s > scatter(dd1, posieig = "topright", plot = T) 669s > scatter(dd1, posieig = "topleft", plot = T, eig.col = c("white", "blue", "red")) 670s > 670s > data(rhone, package = "ade4") 670s > dd1 <- ade4::dudi.pca(rhone$tab, nf = 4, scannf = FALSE) 670s > g1 <- scatter(dd1, sub = "Principal component analysis", row = list(plabels.optim = TRUE), col.pla.boxes.alpha = 0.5) 670s > g1[2, drop = TRUE] 670s > scatter(dd1, row = list(sub = "Principal component analysis", plabels.optim = TRUE), col.pla.boxes.alpha = 0.5) 670s > scatter(dd1, prop = TRUE, ppoints.cex = 0.2, density.plot = TRUE, row = list(threshold = 0.01)) 671s > 671s > scatter(dd1, posieig = "none") 671s > scatter(dd1, posieig = "bottomright") 671s > scatter(dd1, posieig = c(0.5, 0.5)) 671s > scatter(dd1, posieig = c(0.5, 0.5, 1, 1)) 672s > 672s > 672s > ##################### scatter.coa 672s > data(housetasks, package = "ade4") 672s > par(mfrow = c(2, 2)) 672s > dd2 <- ade4::dudi.coa(housetasks, scan = FALSE) 672s > ade4::scatter(dd2, method = 1, sub = "1 / Standard", posieig = "none") 672s > ade4::scatter(dd2, method = 2, sub = "2 / Columns -> averaging -> Rows", posieig = "none") 672s > ade4::scatter(dd2, method = 3, sub = "3 / Rows -> averaging -> Columns ", posieig = "none") 672s > par(mfrow = c(1, 1)) 672s > 672s > g1 <- scatter(dd2, method = 1, row.sub = "1 / Standard", posieig = "none", plot = FALSE) 672s > g2 <- scatter(dd2, method = 2, col.sub = "2 / Columns -> averaging -> Rows", posieig = "none", plot = FALSE) 672s > g3 <- scatter(dd2, method = 3, row.sub = "3 / Rows -> averaging -> Columns ", posieig = "none", plot = FALSE) 672s > G <- ADEgS(list(g1, g2, g3), layout = c(2, 2), plot = TRUE) 672s > 672s > scatter(dd2, posieig = "none") 672s > scatter(dd2, posieig = "bottomright") 672s > scatter(dd2, posieig = c(0.5, 0.5)) 672s > scatter(dd2, posieig = c(0.5, 0.5, 1, 1)) 673s > 673s > 673s > ##################### scatter.pco 673s > data(yanomama, package = "ade4") 673s > gen <- ade4::quasieuclid(as.dist(yanomama$gen)) 673s > gen1 <- ade4::dudi.pco(gen, scann = FALSE, nf = 3) 673s > scatter(gen1, posieig = "none") 673s > scatter(gen1, posieig = "bottomri") 673s > scatter(gen1, posieig = c(0.5, 0.5)) 673s > scatter(gen1, posieig = c(0.5, 0.5, 1, 1)) 673s > 673s > 673s > ##################### scatter.nipals 673s > data(doubs, package = "ade4") 673s > acp1 <- ade4::dudi.pca(doubs$env, scannf = FALSE, nf = 2) 673s > nip1 <- ade4::nipals(doubs$env) 674s > scatter(nip1, posieig = "none") 674s > scatter(nip1, posieig = "bottomri") 674s > scatter(nip1, posieig = c(0.5, 0.5)) 674s > scatter(nip1, posieig = c(0.5, 0.5, 1, 1)) 674s > 674s > 674s > ##################### score.inertia - plot.inertia 674s > data(housetasks, package = "ade4") 674s > coa2 <- ade4::dudi.coa(housetasks, scann = FALSE) 674s > res21 <- ade4::inertia(coa2, row = TRUE, col = FALSE) 674s > plot(res21, posieig = "none") 674s > plot(res21, posieig = "bottomri") 674s > plot(res21, posieig = c(0.5,0.5)) 674s > plot(res21, posieig = c(0.5, 0.5, 1, 1)) 675s > score(res21, posieig = "none") 675s > score(res21, posieig = "bottomri") 675s > score(res21, posieig = c(0.5, 0.5)) 675s > score(res21, posieig = c(0.5, 0.5, 1, 1)) 675s > 675s > res22 <- ade4::inertia(coa2, row = FALSE, col = TRUE) 675s > plot(res22, posieig = "none") 675s > plot(res22, posieig = "bottomri") 675s > plot(res22, posieig = c(0.5, 0.5)) 675s > plot(res22, posieig = c(0.5, 0.5, 1, 1)) 675s > score(res22, posieig = "none") 675s > score(res22, posieig = "bottomri") 676s > score(res22, posieig = c(0.5, 0.5)) 676s > score(res22, posieig = c(0.5, 0.5, 1, 1)) 676s > 676s > res23 <- ade4::inertia(coa2, row = TRUE, col = TRUE) 676s > plot(res23, posieig = "none") 676s > plot(res23, posieig = "bottomri") 676s > plot(res23, posieig = c(0.5, 0.5)) 676s > plot(res23, posieig = c(0.5, 0.5, 1, 1)) 676s > score(res23, posieig = "none") 676s > score(res23, posieig = "bottomri") 677s > score(res23, posieig = c(0.5, 0.5)) 677s > score(res23, posieig = c(0.5, 0.5, 2, 2)) 677s > 677s > 677s > ##################### plot.acm 677s > data(lascaux, package = "ade4") 677s > 677s > acm1 <- ade4::dudi.acm(lascaux$ornem, sca = FALSE) 677s > p1 <- proc.time() 677s > ade4::scatter(acm1) 677s > Tade4 <- proc.time() - p1 677s > 677s > p2 <- proc.time() 677s > plot(acm1, ppoints.cex = 0.3, plot = T) 678s > Tadegraphics <- proc.time() - p2 678s > ## faster calculus, longest display than for ade4 678s > 678s > 678s > ##################### plot.fca 678s > data(coleo, package = "ade4") 678s > coleo.fuzzy <- ade4::prep.fuzzy.var(coleo$tab, coleo$col.blocks) 678s 2 missing data found in block 1 678s 1 missing data found in block 3 678s 2 missing data found in block 4 678s > 678s > fca1 <- ade4::dudi.fca(coleo.fuzzy, scannf = FALSE, nf = 3) 678s > ade4::scatter(fca1) 678s > plot(fca1) 679s > 679s 679s R version 4.3.2 (2023-10-31) -- "Eye Holes" 679s Copyright (C) 2023 The R Foundation for Statistical Computing 679s Platform: x86_64-pc-linux-gnu (64-bit) 679s 679s R is free software and comes with ABSOLUTELY NO WARRANTY. 679s You are welcome to redistribute it under certain conditions. 679s Type 'license()' or 'licence()' for distribution details. 679s 679s R is a collaborative project with many contributors. 679s Type 'contributors()' for more information and 679s 'citation()' on how to cite R or R packages in publications. 679s 679s Type 'demo()' for some demos, 'help()' for on-line help, or 679s 'help.start()' for an HTML browser interface to help. 679s Type 'q()' to quit R. 679s 679s > library(adegraphics) 679s Registered S3 methods overwritten by 'adegraphics': 679s method from 679s biplot.dudi ade4 679s kplot.foucart ade4 679s kplot.mcoa ade4 679s kplot.mfa ade4 679s kplot.pta ade4 679s kplot.sepan ade4 679s kplot.statis ade4 679s scatter.coa ade4 679s scatter.dudi ade4 679s scatter.nipals ade4 679s scatter.pco ade4 679s score.acm ade4 679s score.mix ade4 679s score.pca ade4 679s screeplot.dudi ade4 679s > pdf("adegraphics.pdf") 679s > 679s > xy <- cbind.data.frame(runif(7), runif(7)) 679s > g1 <- s.label(xy) 679s > 679s > data(olympic, package = "ade4") 679s > pca <- ade4::dudi.pca(olympic$tab, scan = FALSE) 679s > g2 <- s.corcircle(pca$co, lab = names(olympic$tab)) 679s > 679s > g3 <- ADEgS(list(g1, g2), rbind(c(0, 0, 0.5, 1), c(0.5, 0, 1, 1))) 679s > g4 <- ADEgS(list(g1, g2), layout = c(1, 2)) ## the same as g3 680s > g4b <- ADEgS(list(g1, g2)) ## the same as g3 680s > g5 <- s.label(xy, plabels.cex = 0, paxes.draw = TRUE, ppoints.col = "red") 680s > 680s > g6 <- superpose(g1, g5, plot = TRUE) 680s > g6b <- s.density(xy) 680s > g7 <- superpose(s.density(xy), g5, plot = TRUE) 681s > 681s > g8 <- superpose(s.label(xy, plabels.boxes.col = "orange", plot = FALSE), 681s + s.label(xy, plabels.cex = 0, paxes.draw = TRUE, ppoints.col = "red", plot = FALSE), 681s + plot = TRUE) 681s > 681s > g9 <- g8[1, drop = TRUE] 681s > class(g9) 681s [1] "S2.label" 681s attr(,"package") 681s [1] "adegraphics" 681s > g10 <- g8[1, drop = FALSE] 681s > class(g10) 681s [1] "ADEgS" 681s attr(,"package") 681s [1] "adegraphics" 681s > 681s > g11 <- ADEgS(list(g8, g3), positions = rbind(c(0, 0, 0.5, 1), c(0.5, 0, 1, 1))) 681s > 681s > ## cbindADEgS - rbindADEgS 681s > g12 <- cbindADEg(g1, g2, plot = TRUE) ## the same as g3 681s > g13 <- cbindADEg(g8, g3, plot = TRUE) ## the same as g11 681s > g14 <- rbindADEg(g8, g3, plot = TRUE) 681s > 681s > data(banque, package = "ade4") 681s > banque.acm <- ade4::dudi.acm(banque, scann = FALSE, nf = 3) 681s > g15 <- score(banque.acm, which = which(banque.acm$cr[, 1] > 0.2), plot = FALSE) 681s > g15 <- g15[[1]] 681s > cbindADEg(g15[[1]], g15[[2]], plot = TRUE) ## work on trellis object 682s > 682s > 682s 682s R version 4.3.2 (2023-10-31) -- "Eye Holes" 682s Copyright (C) 2023 The R Foundation for Statistical Computing 682s Platform: x86_64-pc-linux-gnu (64-bit) 682s 682s R is free software and comes with ABSOLUTELY NO WARRANTY. 682s You are welcome to redistribute it under certain conditions. 682s Type 'license()' or 'licence()' for distribution details. 682s 682s R is a collaborative project with many contributors. 682s Type 'contributors()' for more information and 682s 'citation()' on how to cite R or R packages in publications. 682s 682s Type 'demo()' for some demos, 'help()' for on-line help, or 682s 'help.start()' for an HTML browser interface to help. 682s Type 'q()' to quit R. 682s 682s > library(ade4) 682s > library(adegraphics) 682s Registered S3 methods overwritten by 'adegraphics': 682s method from 682s biplot.dudi ade4 682s kplot.foucart ade4 682s kplot.mcoa ade4 682s kplot.mfa ade4 682s kplot.pta ade4 682s kplot.sepan ade4 682s kplot.statis ade4 682s scatter.coa ade4 682s scatter.dudi ade4 682s scatter.nipals ade4 682s scatter.pco ade4 682s score.acm ade4 682s score.mix ade4 682s score.pca ade4 682s screeplot.dudi ade4 682s 682s Attaching package: 'adegraphics' 682s 682s > library(sp) 682s The following objects are masked from 'package:ade4': 682s 682s kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image, 682s s.label, s.logo, s.match, s.traject, s.value, table.value, 682s triangle.class 682s 682s > library(lattice) 682s > 682s > pdf("nbgraph.pdf") 682s > 682s > if(require(spdep)) { 682s + data(elec88, package = "ade4") 682s + coords <- sp::coordinates(elec88$Spatial) 682s + 682s + xyplot(coords[, 2] ~ coords[, 1], 682s + panel = function(...) {adeg.panel.nb(elec88$nb, coords)}) 682s + 682s + g1 <- s.label(coords, nb = elec88$nb, porigin.include = F, plabels.cex = 0.7, 682s + ppoints.cex = 2, Sp = elec88$Spatial, pSp.col = "red", pSp.alpha = 0.5) 682s + } 682s Loading required package: spdep 682s Loading required package: spData 682s To access larger datasets in this package, install the spDataLarge 682s package with: `install.packages('spDataLarge', 682s repos='https://nowosad.github.io/drat/', type='source')` 682s Loading required package: sf 683s Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.3.1; sf_use_s2() is TRUE 683s 683s Attaching package: 'spdep' 683s 683s The following object is masked from 'package:ade4': 683s 683s mstree 683s 683s > 684s 684s R version 4.3.2 (2023-10-31) -- "Eye Holes" 684s Copyright (C) 2023 The R Foundation for Statistical Computing 684s Platform: x86_64-pc-linux-gnu (64-bit) 684s 684s R is free software and comes with ABSOLUTELY NO WARRANTY. 684s You are welcome to redistribute it under certain conditions. 684s Type 'license()' or 'licence()' for distribution details. 684s 684s R is a collaborative project with many contributors. 684s Type 'contributors()' for more information and 684s 'citation()' on how to cite R or R packages in publications. 684s 684s Type 'demo()' for some demos, 'help()' for on-line help, or 684s 'help.start()' for an HTML browser interface to help. 684s Type 'q()' to quit R. 684s 684s > library(ade4) 684s > library(adegraphics) 684s Registered S3 methods overwritten by 'adegraphics': 684s method from 684s biplot.dudi ade4 684s kplot.foucart ade4 684s kplot.mcoa ade4 684s kplot.mfa ade4 684s kplot.pta ade4 684s kplot.sepan ade4 684s kplot.statis ade4 684s scatter.coa ade4 684s scatter.dudi ade4 684s scatter.nipals ade4 684s scatter.pco ade4 684s score.acm ade4 684s score.mix ade4 684s score.pca ade4 684s screeplot.dudi ade4 684s 684s Attaching package: 'adegraphics' 684s 684s The following objects are masked from 'package:ade4': 684s 684s kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image, 684s > s.label, s.logo, s.match, s.traject, s.value, table.value, 684s triangle.class 684s 684s library(sp) 684s > pdf("panelSpatial.pdf") 684s > 684s > ## ex1 684s > data(mafragh, package = "ade4") 684s > dfxy1 <- coordinates(mafragh$Spatial) 684s > g1 <- s.label(dfxy1, Sp = mafragh$Spatial, pSp.col = colorRampPalette(c("yellow", "blue"))(97), pgrid.draw = FALSE, plabels.cex = 0) 685s > 685s > 685s > ## ex2 685s > data(meuse, package = "sp") 685s > coordinates(meuse) <- ~ x + y 685s > data(meuse.grid, package = "sp") 685s > m <- SpatialPixelsDataFrame(points = meuse.grid[c("x", "y")], data = meuse.grid) 685s > data(meuse.riv) 685s > meuse.sr <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)), "meuse.riv"))) 685s > 685s > scale1 <- list("SpatialPolygonsRescale", offset = c(179900, 329600), scale = 500, fill = c("transparent", "black"), layout.scale.bar()) 685s > text11 <- list("sp.text", c(179900, 329700), "0") 685s > text21 <- list("sp.text", c(180400, 329700), "500 m") 685s > arrow1 <- list("SpatialPolygonsRescale", offset = c(178750, 332500), scale = 400, layout.north.arrow()) 685s > river <- list("sp.polygons", meuse.sr, fill = "lightblue") 685s > dfxy2 <- as.data.frame(coordinates(meuse)) 685s > g2 <- s.value(dfxy2, z = meuse[, 1]$cadmium, sp.layout = list(scale1, text11, text21, arrow1, river), Sp = m) 686s > 686s > fac <- meuse@data$ffreq 686s > levels(fac)[1] <- "1 in 2 years" 686s > levels(fac)[2] <- "1 in 10 years" 686s > levels(fac)[3] <- "1 in 50 years" 686s > arrow2 <- list("SpatialPolygonsRescale", layout.north.arrow(), offset = c(181750, 330000), scale = 400) 686s > scale2 <- list("SpatialPolygonsRescale", layout.scale.bar(), offset = c(178050, 333600), scale = 500, fill = c("transparent", "black")) 686s > text12 <- list("sp.text", c(178050, 333700), "0") 686s > text22 <- list("sp.text", c(178550, 333700), "500 m") 686s > g3 <- s.class(dfxy2, fac = fac, sp.layout = list(scale2, text12, text22, arrow2, river), starSize = 1, col = c(1, 2, 4), pellipses.col = c(1, 2, 4), 686s + pellipses.alpha = 0.7, plines.lty = 3, psub.text = "Flooding frequency \n near the Meuse river", psub.pos = c(0.2, 0.88), pgrid.text.cex = 0, 686s + porigin.include = FALSE, Sp = meuse.sr) 686s > 686s > ## ex3 686s > # if(require(Guerry)) { 686s > # data(gfrance85) 686s > # 686s > # dfxy4 <- coordinates(gfrance85) 686s > # region.names <- data.frame(gfrance85)[, 5] 686s > # col.region <- colors()[c(149, 254, 468, 552, 26)] 686s > # g4 <- s.class(dfxy4, region.names, ellip = 0, star = 0, col = col.region, Sp = gfrance85, pSp.col = col.region[region.names], porig.inclu = F) 686s > # } 686s > 686s > ## ex4 686s > library(sp) 686s > library(lattice) 686s > 686s > data(elec88, package = "ade4") 686s > sp <- elec88$Spatial 686s > 686s > g5 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], panel = function(...) {adeg.panel.Spatial(SpObject = sp, col = "black", border = "black")}) 686s > g6 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], panel = function(...) {adeg.panel.Spatial(sp, col = 1:14, border = "black")}) 686s > g7 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], aspect = "iso", panel = function(...) {sp.polygons(sp, col = "black", fill = 1:5)}) 686s > g8 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], panel = function(...) {adeg.panel.Spatial(SpObject = sp, col = "black", border = "blue")}) 686s > g9 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], panel = function(...) {adeg.panel.Spatial(SpObject = sp, col = "black", border = "blue")}) 686s > #g10 <- s.label(cbind(-80, 35), Sp = nc) 686s > #g11 <- s.label(cbind(-80, 35), Sp = sp) 686s > 686s > 686s > ## ex5 686s > data(jv73, package = "ade4") 686s > g12 <- s.label(jv73$xy, Sp = jv73$Spatial) 686s > g13 <- s.label(jv73$xy, Sp = jv73$Spatial, pSp.col = "red") 686s > 686s > spoints <- SpatialPoints(jv73$xy) 686s > g14 <- s.label(jv73$xy, Sp = spoints, plab.cex = 0, ppoin.cex = 0, pSp.col = 1) 686s > 686s > sgrid <- SpatialGrid(GridTopology(c(0, 0), c(1, 1), c(3, 5))) 686s > xyplot(0:5 ~ 0:3, panel = function(...) sp.grid(sgrid, col = 1:2)) 686s > 686s > nc <- SpatialGridDataFrame(getGridTopology(sgrid), data = data.frame(matrix(1:15, ncol = 1))) 686s > xyplot(0:5 ~ 0:3, panel = function(...) sp.grid(nc, col = 1, at = pretty(rnorm(15), 2), col.region = 2:3)) 686s > xyplot(0:5 ~ 0:3, panel = function(...) adeg.panel.Spatial(nc, col = 1:3)) 686s > xyplot(0:5 ~ 0:3, panel = function(...) adeg.panel.Spatial(nc, col = 1:2)) 686s > 686s > 686s > ## ex6 686s > mysp <- SpatialPointsDataFrame(matrix(rnorm(20), 10), data.frame(matrix(rnorm(20), 10))) 686s > s.Spatial(mysp) 686s > s.Spatial(mysp, col = c("red", "blue")) 686s > s.Spatial(mysp, ppoints.cex = 2) 686s > s.Spatial(mysp, ppoints.alpha = 0.5) 686s > s.Spatial(mysp, symbol = "circle") 686s > s.Spatial(mysp, method = "color", ppalette.quanti = colorRampPalette(c("red", "white", "blue"))) 686s > 687s 687s R version 4.3.2 (2023-10-31) -- "Eye Holes" 687s Copyright (C) 2023 The R Foundation for Statistical Computing 687s Platform: x86_64-pc-linux-gnu (64-bit) 687s 687s R is free software and comes with ABSOLUTELY NO WARRANTY. 687s You are welcome to redistribute it under certain conditions. 687s Type 'license()' or 'licence()' for distribution details. 687s 687s R is a collaborative project with many contributors. 687s Type 'contributors()' for more information and 687s 'citation()' on how to cite R or R packages in publications. 687s 687s Type 'demo()' for some demos, 'help()' for on-line help, or 687s 'help.start()' for an HTML browser interface to help. 687s Type 'q()' to quit R. 687s 687s > library(ade4) 687s > library(adegraphics) 687s Registered S3 methods overwritten by 'adegraphics': 687s method from 687s biplot.dudi ade4 687s kplot.foucart ade4 687s kplot.mcoa ade4 687s kplot.mfa ade4 687s kplot.pta ade4 687s kplot.sepan ade4 687s kplot.statis ade4 687s scatter.coa ade4 687s scatter.dudi ade4 687s scatter.nipals ade4 687s scatter.pco ade4 687s score.acm ade4 687s score.mix ade4 687s score.pca ade4 687s screeplot.dudi ade4 687s 687s Attaching package: 'adegraphics' 687s 687s The following objects are masked from 'package:ade4': 687s 687s kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image, 687s s.label, s.logo, s.match, s.traject, s.value, table.value, 687s triangle.class 687s 687s > pdf("parameter.pdf") 687s > 687s > adegparold <- adegpar() 687s > b1 <- length(adegraphics:::separation(plines = list(col = "blue"), plab.bo.dra = FALSE, plab = list(orien = F))$rest) == 0 687s > b2 <- length(adegraphics:::separation(plines = list(col = "blue", lwd = c(1:5)), parr.end = NA, plab.boxes.dr = FALSE)$rest) == 0 687s > b3 <- length(adegraphics:::separation(plot.li = list(col = "blue", lwd = c(1:5)), par.end = NA, pl.boxes.draw = FALSE, pattern = 1)$rest) == 2 687s > b4 <- length(adegraphics:::separation(plot.li = list(col = "blue", lwd = c(1:5)), par.end = NA, pl.boxes.draw = FALSE, pattern = 0)$rest) == 2 687s > b5 <- length(adegraphics:::separation()) == 2 687s > b6 <- length(adegraphics:::separation(par.sub.text = list("lineheight" = 5), pattern = 1)$rest) == 0 687s > b7 <- names(adegraphics:::separation(toto = "rienavoir!")$rest) == "toto" 687s > b8 <- names(adegraphics:::separation(toto = "rienavoir!", pattern = 1)$rest) == "toto" 687s > 687s > l1 <- list(parrow = list(col = "blue", lwd = c(1:5), end = NA), plboxes.draw = FALSE, pattern = 1) 687s > sep1 <- adegraphics:::separation(l1) ## no recognition of "pattern" in a list 687s > 687s > l2 <- list("parrow.lwd", "plboxes.draw") 687s > sep2 <- adegraphics:::separation(l2) 687s > 687s > sep3 <- adegraphics:::separation("plboxes" = list("draw" = FALSE, "col")) 687s > sep4 <- adegraphics:::separation("plboxes" = list("draw" = FALSE, "col" = 2)) 687s > sep5 <- adegraphics:::separation(pla.box = list(col = 1:5)) 687s > sep6 <- adegraphics:::separation(pla.box.col = c(1:5)) 687s > sep7 <- adegraphics:::separation(pla = list(box.col = 1:5)) ## don't match 687s > 687s > 687s > ## adegpar test 687s > ad1 <- adegpar() 687s > ad2 <- adegpar("paxes.draw") 687s > ad3 <- adegpar("paxes.draw", "psub.cex") 687s > 687s > ad4 <- adegpar("psub.cex" = 5) 687s > ad5 <- adegpar("psub.cex" = 5, paxes.draw = FALSE) 687s > ad6 <- adegpar("psub") 687s > ad7 <- adegpar("psub.cex", "plabe.boxes") 687s > 687s > ad8 <- adegpar(ppoints = list(col = "yellow"), pgrid.space = 4, plines = list(lwd = c(1:5))) 687s > ad9 <- adegpar(ppoints = list(col = "red"), pgrid = list(nint = 12), plines = list(lwd = c(1:5))) 687s > ad10 <- adegpar("ppoints.col", "pgrid.nint", "plines") 687s > 687s > ad11 <- adegpar(paxes = list("x"), pgrid = list("nint", "col")) 687s > ad12 <- adegpar(list(pellip = list(col = "red"), grid.nint = 8, plines = list(lwd = c(1:5)))) 687s > ad13 <- adegpar(paxes = list("x"), pgrid = list("nint", "col"), "plines", "pellipse") 687s > 687s > ad14 <- adegpar(plegend.drawKey = FALSE) 687s > ad15 <- adegpar(list(paxes = list(col = "white"), pgrid.nint = 6, plines = list(lwd = c(1:5)))) 687s > ad16 <- adegpar(paxes = list(x = list(draw = TRUE))) 687s > 687s > adegpar(adegparold) 687s > 687s > ## merging list 687s > l3 <- list(plabels = list(boxes = list(col = "white", alpha = 1)), plabels = list(cex = 2), plabels = list(col = "red")) 687s > adegraphics:::.mergingList(l3) 687s $plabels 687s $plabels$boxes 687s $plabels$boxes$col 687s [1] "white" 687s 687s $plabels$boxes$alpha 687s [1] 1 687s 687s 687s $plabels$cex 687s [1] 2 687s 687s $plabels$col 687s [1] "red" 687s 687s 687s > adegraphics:::.mergingList(list(plabels = list(cex = 3))) 687s $plabels 687s $plabels$cex 687s [1] 3 687s 687s 687s > 687s > 687s > ## update parameters in graphics 687s > cha <- rep(LETTERS, length.out = 100) 687s > xy <- cbind.data.frame(runif(length(cha)), runif(length(cha))) 687s > g1 <- s.label(xy, labels = cha, paxes.draw = TRUE, plabels.cex = runif(length(cha), 0.5, 1.5)) 687s > update(g1, paxes = list(aspect = "fill", draw = TRUE, x = list(draw = FALSE)), 687s + pgrid = list(col = "black", lwd = 2, lty = 5), 687s + plabels = list(col = 1:4, alpha = 0.5, cex = 2, boxes = list(border = "blue", col = "antiquewhite", alpha = 0.2, lwd = 2.5, lty = 5))) 688s > 688s > g2 <- s.label(xy, labels = cha) 688s > update(g2, paxes.draw = FALSE, pgrid = list(col = "blue", lwd = 2, lty = 5, text = list(pos = "bottomright", cex = 2, col = "green"))) 688s > update(g2, porigin = list(alpha = 0.5, col = "red", lty = 5 , lwd = 2, origin = c(0.6, 0.1)), pgrid.lwd = 0.5) 688s > update(g2, psub = list(text = "parameters", cex = 2, col = "red", position = "topright")) 688s > update(g2, plabels.cex = 0, ppoints = list(alpha = 0.4, cex = 2, col = "red", fill = "blue", pch = 21)) 688s > 688s > 688s > ## from tdr641 688s > data(doubs, package = "ade4") 688s > dudi1 <- ade4::dudi.pca(doubs$env, scale = T, scannf = F, nf = 3) 688s > dudi2 <- ade4::dudi.pca(doubs$fish, scale = T, scannf = F, nf = 2) 688s > coin1 <- ade4::coinertia(dudi1, dudi2, scannf = F, nf = 2) 688s > g3 <- s.arrow(coin1$l1, plabels.cex = .87) 688s > update(g3, plines = list(col = "blue", lwd = 2, lty = 3), parr.end = "both", parr = list(angle = 25, length = 0.5)) 688s > 688s > ## with spatial object 688s > data(elec88, package = "ade4") 688s > g4 <- s.label(elec88$xy, label = as.character(1:nrow(elec88$xy)), porigin.include = FALSE, Sp = elec88$Spatial, pSp.col = colorRampPalette(c("yellow", "blue"))(5), pgrid.draw = TRUE) 689s > update(g4, pSp = list(col = "yellow", border = "blue", lwd = 2, lty = 5, alpha = 0.01)) ## don't match : to solve 689s > 689s > ## plabels parameter 689s > data(tortues, package = "ade4") 689s > pturtles <- tortues 689s > names(pturtles) <- c("length", "width", "height", "sex") 689s > sex <- pturtles$sex 689s > sexcol <- ifelse(sex == "M", "blue", "red") 689s > measures <- pturtles[, 1:3] 689s > pca1 <- ade4::dudi.pca(measures, scann = FALSE, nf = 3) 689s > g5 <- scatter(pca1, row.plabel.cex = 0, col.plabel.cex = c(1, 2, 3), posieig = "none", col.plabel.col = c("red", "blue", "green")) 689s > 689s 689s R version 4.3.2 (2023-10-31) -- "Eye Holes" 689s Copyright (C) 2023 The R Foundation for Statistical Computing 689s Platform: x86_64-pc-linux-gnu (64-bit) 689s 689s R is free software and comes with ABSOLUTELY NO WARRANTY. 689s You are welcome to redistribute it under certain conditions. 689s Type 'license()' or 'licence()' for distribution details. 689s 689s R is a collaborative project with many contributors. 689s Type 'contributors()' for more information and 689s 'citation()' on how to cite R or R packages in publications. 689s 689s Type 'demo()' for some demos, 'help()' for on-line help, or 689s 'help.start()' for an HTML browser interface to help. 689s Type 'q()' to quit R. 689s 690s > library(adegraphics) 690s Registered S3 methods overwritten by 'adegraphics': 690s method from 690s biplot.dudi ade4 690s kplot.foucart ade4 690s kplot.mcoa ade4 690s kplot.mfa ade4 690s kplot.pta ade4 690s kplot.sepan ade4 690s kplot.statis ade4 690s scatter.coa ade4 690s scatter.dudi ade4 690s scatter.nipals ade4 690s scatter.pco ade4 690s score.acm ade4 690s score.mix ade4 690s score.pca ade4 690s screeplot.dudi ade4 690s > pdf("s.arrow.pdf") 690s > 690s > ## ex1 : from tdr641 690s > data(doubs, package = "ade4") 690s > dudi1 <- ade4::dudi.pca(doubs$env, scale = T, scan = F, nf = 3) 690s > dudi2 <- ade4::dudi.pca(doubs$fish, scale = T, scan = F, nf = 2) 690s > coin1 <- ade4::coinertia(dudi1, dudi2, scan = F, nf = 2) 690s > g1 <- s.arrow(coin1$l1, plabels.cex = 0.87) 691s > g2 <- s.arrow(coin1$c1, plabels.cex = 1) 691s > 691s > ## ex2 : from bs81 691s > data(granulo, package = "ade4") 691s > w <- data.frame(t(apply(granulo$tab, 1, function(x) x / sum(x)))) 691s > g3 <- s.arrow(ade4::dudi.pca(data.frame(w), scan = F, nf = 2)$co) 691s > 691s > wtr <- data.frame(t(w)) 691s > wmoy <- data.frame(matrix(apply(wtr, 1, mean), 1)) 691s > dudi3 <- ade4::dudi.pca(w, scal = FALSE, scan = FALSE) 691s > wmoy <- ade4::suprow(dudi3, wmoy)$lisup 691s > 691s > g4 <- s.arrow(dudi3$c1, plabels.cex = 1.5) 691s > g4 <- s.distri(dudi3$c1, wtr, starSize = 0.33, ellipseSize = 0, add = TRUE, plabels.cex = 1) 691s > g4 <- s.label(wmoy, ppoint.cex = 5, plabels.cex = 0, add = TRUE) 691s > 691s > ## ex3 691s > data(deug, package = "ade4") 691s > pca1 <- ade4::dudi.pca(deug$tab, scal = FALSE, center = deug$cent, scan = FALSE) 691s > g5 <- s.arrow(40 * pca1$c1) 691s > 691s > ## ex4 691s > xy <- cbind(rnorm(50), rnorm(50)) 691s > g6 <- s.arrow(xy, plabels.cex = 0.9, parrows = list(angle = 20)) 691s > 691s 691s R version 4.3.2 (2023-10-31) -- "Eye Holes" 691s Copyright (C) 2023 The R Foundation for Statistical Computing 691s Platform: x86_64-pc-linux-gnu (64-bit) 691s 691s R is free software and comes with ABSOLUTELY NO WARRANTY. 691s You are welcome to redistribute it under certain conditions. 691s Type 'license()' or 'licence()' for distribution details. 691s 691s R is a collaborative project with many contributors. 691s Type 'contributors()' for more information and 691s 'citation()' on how to cite R or R packages in publications. 691s 691s Type 'demo()' for some demos, 'help()' for on-line help, or 691s 'help.start()' for an HTML browser interface to help. 691s Type 'q()' to quit R. 691s 691s > library(adegraphics) 692s Registered S3 methods overwritten by 'adegraphics': 692s method from 692s biplot.dudi ade4 692s kplot.foucart ade4 692s kplot.mcoa ade4 692s kplot.mfa ade4 692s kplot.pta ade4 692s kplot.sepan ade4 692s kplot.statis ade4 692s scatter.coa ade4 692s scatter.dudi ade4 692s scatter.nipals ade4 692s scatter.pco ade4 692s score.acm ade4 692s score.mix ade4 692s score.pca ade4 692s screeplot.dudi ade4 692s > pdf("s.class.pdf") 692s > 692s > xy0 <- cbind.data.frame(x = runif(20, -1, 1), y = runif(20, -1, 6)) 692s > basic <- s.class(xy0, fac = factor(rep(c("A", "B"), le = 20)), chull = 0, star = 0) 692s > 692s > xy1 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 6)) 692s > fac1 <- factor(xy1$x > 0) : factor(xy1$y > 0) 692s > g1 <- s.class(xy1, fac = fac1, storeData = F, col = 1:4, pbackground.box = T, pbackground.col = grey(0.85), paxes.draw = T, ell = 0) 692s > 692s > ## multiaxis 692s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, .5)) 692s > fac2 <- factor(xy2$x > 0) 692s > g2 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, storeData = F, plot = F) 692s > print(g2) 692s > 692s > ## insertion 692s > print(ADEgS(list(g1, g2), posi = rbind(c(0, 0, 1, 1), c(0.7, 0.5, 1, 0.9)))) 693s > 693s > ## color test 693s > g3 <- s.class(xy1, fac = fac2, psub.text = "Graphic 3", "ppoints.col" = 1:5, plabels.boxes = list(col = "white", alpha = 0.8), pellipses.col = 1:5, col = 1:5) 693s > 693s > ## test convex hull and parameters 693s > xy4 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 693s > fac4 <- factor(xy4$x > 0) : factor(xy4$y > 0) 693s > col <- c("black", "red", "green", "blue") 693s > g4 <- s.class(xy4, fac4, ppoints.cex = 1.5, chull = T, ellipseSize = 0, starSize = 0, ppolygon = list(border = 4:1, col = 1:4, lty = 1:4, lwd = 2, alpha = 0.4)) 693s > 693s > 693s 693s R version 4.3.2 (2023-10-31) -- "Eye Holes" 693s Copyright (C) 2023 The R Foundation for Statistical Computing 693s Platform: x86_64-pc-linux-gnu (64-bit) 693s 693s R is free software and comes with ABSOLUTELY NO WARRANTY. 693s You are welcome to redistribute it under certain conditions. 693s Type 'license()' or 'licence()' for distribution details. 693s 693s R is a collaborative project with many contributors. 693s Type 'contributors()' for more information and 693s 'citation()' on how to cite R or R packages in publications. 693s 693s Type 'demo()' for some demos, 'help()' for on-line help, or 693s 'help.start()' for an HTML browser interface to help. 693s Type 'q()' to quit R. 693s 693s > library(adegraphics) 693s Registered S3 methods overwritten by 'adegraphics': 693s method from 693s biplot.dudi ade4 693s kplot.foucart ade4 693s kplot.mcoa ade4 693s kplot.mfa ade4 693s kplot.pta ade4 693s kplot.sepan ade4 693s kplot.statis ade4 693s scatter.coa ade4 693s scatter.dudi ade4 693s scatter.nipals ade4 693s scatter.pco ade4 693s score.acm ade4 693s score.mix ade4 693s score.pca ade4 693s screeplot.dudi ade4 693s > pdf("s.corcircle.pdf") 693s > data(olympic, package = "ade4") 694s > 694s > dudi1 <- ade4::dudi.pca(olympic$tab, scan = FALSE) # a normed PCA 694s > g1 <- s.corcircle(dudi1$co, lab = names(olympic$tab)) 694s > 694s > g2 <- s.corcircle(dudi1$co, lab = names(olympic$tab), fullcircle = T) 694s > g3 <- s.corcircle(dudi1$co, lab = names(olympic$tab), fullcircle = FALSE) 694s > g4 <- s.corcircle(dudi1$co, lab = names(olympic$tab), pback.col = "red", pbackground.box = FALSE) 694s > 694s 694s R version 4.3.2 (2023-10-31) -- "Eye Holes" 694s Copyright (C) 2023 The R Foundation for Statistical Computing 694s Platform: x86_64-pc-linux-gnu (64-bit) 694s 694s R is free software and comes with ABSOLUTELY NO WARRANTY. 694s You are welcome to redistribute it under certain conditions. 694s Type 'license()' or 'licence()' for distribution details. 694s 694s R is a collaborative project with many contributors. 694s Type 'contributors()' for more information and 694s 'citation()' on how to cite R or R packages in publications. 694s 694s Type 'demo()' for some demos, 'help()' for on-line help, or 694s 'help.start()' for an HTML browser interface to help. 694s Type 'q()' to quit R. 694s 694s > library(adegraphics) 694s Registered S3 methods overwritten by 'adegraphics': 694s method from 694s biplot.dudi ade4 694s kplot.foucart ade4 694s kplot.mcoa ade4 694s kplot.mfa ade4 694s kplot.pta ade4 694s kplot.sepan ade4 694s kplot.statis ade4 694s scatter.coa ade4 694s scatter.dudi ade4 694s scatter.nipals ade4 694s scatter.pco ade4 694s score.acm ade4 694s score.mix ade4 694s score.pca ade4 694s screeplot.dudi ade4 695s > pdf("s.density.pdf") 695s > 695s > xx1 <- rnorm(1000, 1, 2) 695s > yy1 <- rnorm(1000, 1, 2) 695s > 695s > g1 <- s.density(cbind(xx1, yy1), paxes.draw = T, gridsize = c(40, 40)) 695s > g2 <- s.density(cbind(xx1, yy1), paxes.draw = T, gridsize = c(80, 80), col = colorRampPalette(c("red", "blue"))(58), storeData = FALSE, region = TRUE) 695s > g3 <- s.density(cbind(yy1 + 3, xx1 + 3), gridsize = c(400, 400)) 695s > g4 <- s.density(cbind(xx1, yy1), paxes.draw = T, gridsize = c(200, 200), add = TRUE) 695s > g5 <- s.density(cbind(c(rnorm(50000, 1, 1), rnorm(50000, -1, 1)), c(rnorm(50000, -1, 0.5), rnorm(50000, 1, 0.5))), paxes.draw = T, gridsize = c(200, 200), region = TRUE, contour = TRUE, plabels.cex = 1, plabels.srt = "vertial") 695s > g6 <- s.density(cbind(rnorm(300, 3, 0.3), rnorm(300, -2, 0.5)), gridsize = c(500, 500), thres = 0.01, nr = 10, regions = list(alpha = 0.5), col = colorRampPalette(c("red", "blue"))(108)) 697s > g7 <- s.density(cbind(c(rnorm(50000, 1, 1), rnorm(50000, -1, 1)), c(rnorm(50000, -1, 0.5), rnorm(50000, 1, 0.5))), paxes.draw = T, gridsize = c(100, 100), region = TRUE, contour = TRUE, plabels.cex = 1, nclass = 5) 697s > 697s 697s R version 4.3.2 (2023-10-31) -- "Eye Holes" 697s Copyright (C) 2023 The R Foundation for Statistical Computing 697s Platform: x86_64-pc-linux-gnu (64-bit) 697s 697s R is free software and comes with ABSOLUTELY NO WARRANTY. 697s You are welcome to redistribute it under certain conditions. 697s Type 'license()' or 'licence()' for distribution details. 697s 697s R is a collaborative project with many contributors. 697s Type 'contributors()' for more information and 697s 'citation()' on how to cite R or R packages in publications. 697s 697s Type 'demo()' for some demos, 'help()' for on-line help, or 697s 'help.start()' for an HTML browser interface to help. 697s Type 'q()' to quit R. 697s 697s > library(adegraphics) 698s Registered S3 methods overwritten by 'adegraphics': 698s method from 698s biplot.dudi ade4 698s kplot.foucart ade4 698s kplot.mcoa ade4 698s kplot.mfa ade4 698s kplot.pta ade4 698s kplot.sepan ade4 698s kplot.statis ade4 698s scatter.coa ade4 698s scatter.dudi ade4 698s scatter.nipals ade4 698s scatter.pco ade4 698s score.acm ade4 698s score.mix ade4 698s score.pca ade4 698s screeplot.dudi ade4 698s > pdf("s.distri.pdf") 698s > 698s > xy5 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 698s > w1 <- as.numeric((xy5$x > 0) & (xy5$y > 0)) 698s > w2 <- ((xy5$x > 0) & (xy5$y < 0)) * (1 - xy5$y) * xy5$x 698s > w3 <- ((xy5$x < 0) & (xy5$y > 0)) * (1 - xy5$x) * xy5$y 698s > w4 <- ((xy5$x < 0) & (xy5$y < 0)) * xy5$y * xy5$x 698s > distri <- data.frame(a = w1 / sum(w1), b = w2 / sum(w2), c = w3 / sum(w3), d = w4 / sum(w4)) 698s > g5 <- s.distri(xy5, distri, plabels.boxes = list(col = "white", alpha = 1), plabels.cex = 2, plabels.col = 1:5) 698s > 698s > data(rpjdl, package = "ade4") 698s > xy6 <- ade4::dudi.coa(rpjdl$fau, scan = FALSE)$li + 3 698s > g6 <- s.distri(xy6, rpjdl$fau[, 5], ellipseSize = 1.5, psub = list(text = rpjdl$frlab[5], cex = 2, pos = c(0.2, 0.1))) 698s > g7 <- s.distri(xy6, rpjdl$fau[, 5], ellipseSize = 1.5, psub = list(text = rpjdl$frlab[5], cex = 2, pos = c(0.2, 0.1)), porigin = list(include = FALSE), pellipses.axes.col = "blue") 698s > 698s > ## test add 698s > g8 <- s.distri(xy6, rpjdl$fau[, 5], ellipseSize = 1.5, psub = list(text = rpjdl$frlab[5], cex = 2, pos = c(0.2, 0.1)), porigin.include = FALSE, pellipses = list(col = "blue")) 698s > g9 <- s.distri(xy6, rpjdl$fau[, 12], ellipseSize = 1.5, psub = list(text = rpjdl$frlab[5], cex = 2, pos = c(0.2, 0.1)), porigin.include = FALSE, pellipses = list(col = "red"), add = TRUE) 698s > show(g9) ## g8 is a superposition, an ADEgS object 698s > 698s > ## add 698s > index <- c(1, 5, 8, 20, 21, 23, 26, 33, 36, 44, 47, 49) 698s > col <- colorRampPalette(c("blue", "red", "orange"))(49) 698s > s.distri(xy6, rpjdl$fau[, 1], ellipseSize = 1, starSize = 0, porigin.include = FALSE, pellipses = list(col = col[1], alpha = 0.3)) 698s > for(i in index[-1]) 698s + s.distri(xy6, rpjdl$fau[, i], ellipseSize = 1, starSize = 0, porigin.include = FALSE, pellipses = list(col = col[i], alpha = 0.3), add = TRUE) 699s > 699s > current <- get("currentadeg", env = adegraphics:::.ADEgEnv) 699s > print(current[[6]]) 699s > length(current) == length(index) 699s [1] TRUE 699s > 699s 699s R version 4.3.2 (2023-10-31) -- "Eye Holes" 699s Copyright (C) 2023 The R Foundation for Statistical Computing 699s Platform: x86_64-pc-linux-gnu (64-bit) 699s 699s R is free software and comes with ABSOLUTELY NO WARRANTY. 699s You are welcome to redistribute it under certain conditions. 699s Type 'license()' or 'licence()' for distribution details. 699s 699s R is a collaborative project with many contributors. 699s Type 'contributors()' for more information and 699s 'citation()' on how to cite R or R packages in publications. 699s 699s Type 'demo()' for some demos, 'help()' for on-line help, or 699s 'help.start()' for an HTML browser interface to help. 699s Type 'q()' to quit R. 699s 699s > library(adegraphics) 699s Registered S3 methods overwritten by 'adegraphics': 699s method from 699s biplot.dudi ade4 699s kplot.foucart ade4 699s kplot.mcoa ade4 699s kplot.mfa ade4 699s kplot.pta ade4 699s kplot.sepan ade4 699s kplot.statis ade4 699s scatter.coa ade4 699s scatter.dudi ade4 699s scatter.nipals ade4 699s scatter.pco ade4 699s score.acm ade4 699s score.mix ade4 699s score.pca ade4 699s screeplot.dudi ade4 699s > library(sp) 699s > pdf("s.image.pdf") 699s > 699s > ## ex1 699s > xy <- data.frame(expand.grid(-3:3, -3:3)) 699s > names(xy) <- c("x", "y") 699s > z <- (1 / sqrt(2)) * exp(-(xy$x ^ 2 + xy$y ^ 2) / 2) 699s > s.image(xy, z) 700s > s.image(xy, z, grid = 20) 700s > s.image(xy, z, grid = 500) 700s > 700s > ## ex2 700s > Sr1 <- Polygon(cbind(c(0, 1, 2, 1, 2, 0 , -2, -1, -2, -1, 0), c(2.5, 1.5, 2, 0, -2, -1, -2, 0, 2, 1.5, 2.5))) 700s > Srs1 <- Polygons(list(Sr1), ID = "stars") 700s > SPp1 <- SpatialPolygons(list(Srs1)) 700s > xy1 <- cbind(rnorm(100, 0, 1), rnorm(100, 0, 1.5)) 700s > g1 <- s.image(xy1, runif(100), outsideLimits = SPp1) 700s > 700s > ## ex3 700s > Sr2 <- Polygon(cbind(c(-0.5, 0.5, 0.5, -0.5, -0.5), c(0, 0, 1 ,1, 0)), hole = TRUE) 700s > Srs2 <- Polygons(list(Sr1, Sr2), ID = "hole") 700s > SPp2 <- SpatialPolygons(list(Srs2)) 700s > xy2 <- cbind(c(rnorm(2000, 1, 0.25), rnorm(3000, -1, 1.5)), c(rnorm(2000, 1, 0.5), rnorm(3000, -1, 3))) 700s > z <- c(rnorm(2000, 12, 1), rnorm(3000, 1, 2)) 700s > g2 <- s.image(xy2, z, outsideLimits = SPp2, grid = 500, xlim = c(-2.5, 2.5), ylim = c(-2, 3)) 702s > 702s 702s R version 4.3.2 (2023-10-31) -- "Eye Holes" 702s Copyright (C) 2023 The R Foundation for Statistical Computing 702s Platform: x86_64-pc-linux-gnu (64-bit) 702s 702s R is free software and comes with ABSOLUTELY NO WARRANTY. 702s You are welcome to redistribute it under certain conditions. 702s Type 'license()' or 'licence()' for distribution details. 702s 702s R is a collaborative project with many contributors. 702s Type 'contributors()' for more information and 702s 'citation()' on how to cite R or R packages in publications. 702s 702s Type 'demo()' for some demos, 'help()' for on-line help, or 702s 'help.start()' for an HTML browser interface to help. 702s Type 'q()' to quit R. 702s 702s > library(adegraphics) 702s Registered S3 methods overwritten by 'adegraphics': 702s method from 702s biplot.dudi ade4 702s kplot.foucart ade4 702s kplot.mcoa ade4 702s kplot.mfa ade4 702s kplot.pta ade4 702s kplot.sepan ade4 702s kplot.statis ade4 702s scatter.coa ade4 702s scatter.dudi ade4 702s scatter.nipals ade4 702s scatter.pco ade4 702s score.acm ade4 702s score.mix ade4 702s score.pca ade4 702s screeplot.dudi ade4 702s > library(grid) 702s > pdf("s.label.pdf") 702s > 702s > x0 <- runif(50, -2, 2) 702s > y0 <- runif(50, -2, 2) 702s > z <- x0 ^ 2 + y0 ^ 2 702s > dfxy1 <- data.frame(x0, y0) 702s > g1 <- s.label(dfxy1, label = as.character(z < 1), paxes.draw = TRUE, axis.text = list(col = "grey")) 703s > g2 <- s.label(dfxy1[1, ]) 703s > g3 <- s.label(dfxy1[1, ], pori.incl = FALSE) 703s > g4 <- s.label(dfxy1, labels = c("", "MM", "", NA, "ooo"), plabels.optim = TRUE) 703s > g5 <- s.label(dfxy1, labels = as.character(z < 1), psub = list(text = "Subtitle", col = "blue", position = "topleft"), plabels.col = 1:5, pgrid.text.pos = c(unit(0.95, "npc"), unit(0.94, "npc"))) 703s > 703s > dfxy2 <- cbind(dfxy1, runif(50, -5, 5)) 703s > g6 <- s.label(dfxy2, xax = 1, yax = 2:3, paxes.draw = TRUE, paxes.aspectratio = 1.5, plabels.cex = 0.8) 703s > 703s > l <- ls() 703s > x1 <- runif(length(l)) 703s > x2 <- runif(100) 703s > y1 <- runif(length(l)) 703s > y2 <- runif(100) 703s > g7 <- s.label(cbind(x2, y2), labels = as.character((x2 * x2 + y2 * y2) < 1)) 703s > g8 <- s.label(cbind(x1, y1), labels = l, add = TRUE, plabels.col = "blue") 703s > 703s 703s R version 4.3.2 (2023-10-31) -- "Eye Holes" 703s Copyright (C) 2023 The R Foundation for Statistical Computing 703s Platform: x86_64-pc-linux-gnu (64-bit) 703s 703s R is free software and comes with ABSOLUTELY NO WARRANTY. 703s You are welcome to redistribute it under certain conditions. 703s Type 'license()' or 'licence()' for distribution details. 703s 703s R is a collaborative project with many contributors. 703s Type 'contributors()' for more information and 703s 'citation()' on how to cite R or R packages in publications. 703s 703s Type 'demo()' for some demos, 'help()' for on-line help, or 703s 'help.start()' for an HTML browser interface to help. 703s Type 'q()' to quit R. 703s 703s > library(adegraphics) 704s Registered S3 methods overwritten by 'adegraphics': 704s method from 704s biplot.dudi ade4 704s kplot.foucart ade4 704s kplot.mcoa ade4 704s kplot.mfa ade4 704s kplot.pta ade4 704s kplot.sepan ade4 704s kplot.statis ade4 704s scatter.coa ade4 704s scatter.dudi ade4 704s scatter.nipals ade4 704s scatter.pco ade4 704s score.acm ade4 704s score.mix ade4 704s score.pca ade4 704s screeplot.dudi ade4 704s > pdf("s.logo.pdf") 704s > 704s > ## ex1 704s > data(ggtortoises, package = "ade4") 704s > ico <- ggtortoises$ico[as.character(ggtortoises$pop$carap)] 704s > g1 <- s.logo(ggtortoises$pop, ico, pori.incl = FALSE) 704s Loading required package: pixmap 704s > g2 <- s.label(ggtortoises$pop, add = TRUE, plabels = list(boxes = list(alpha = 0.4, border = "transparent"))) 704s > 704s > ## ex2 704s > data(capitales, package = "ade4") 704s > index <- unlist(lapply(1:15, function(i) which(names(capitales$logo) == tolower(rownames(capitales$xy)[i]))), use.names = FALSE) 704s > g3 <- s.logo(capitales$xy, capitales$logo[index]) 704s > 704s > x <- c(0, max(capitales$area$x)) 704s > y <- c(0, max(capitales$area$y)) 704s > #g4 <- s.image(cbind(x, y), z = c(1, 2), outsideLimits = capitales$area, grid = 500, regions = list(col = "yellow", alpha = 0.9)) 704s > #s.logo(capitales$xy, capitales$logo[index], add = TRUE) 704s > 704s 704s R version 4.3.2 (2023-10-31) -- "Eye Holes" 704s Copyright (C) 2023 The R Foundation for Statistical Computing 704s Platform: x86_64-pc-linux-gnu (64-bit) 704s 704s R is free software and comes with ABSOLUTELY NO WARRANTY. 704s You are welcome to redistribute it under certain conditions. 704s Type 'license()' or 'licence()' for distribution details. 704s 704s R is a collaborative project with many contributors. 704s Type 'contributors()' for more information and 704s 'citation()' on how to cite R or R packages in publications. 704s 704s Type 'demo()' for some demos, 'help()' for on-line help, or 704s 'help.start()' for an HTML browser interface to help. 704s Type 'q()' to quit R. 704s 704s > library(adegraphics) 705s Registered S3 methods overwritten by 'adegraphics': 705s method from 705s biplot.dudi ade4 705s kplot.foucart ade4 705s kplot.mcoa ade4 705s kplot.mfa ade4 705s kplot.pta ade4 705s kplot.sepan ade4 705s kplot.statis ade4 705s scatter.coa ade4 705s scatter.dudi ade4 705s scatter.nipals ade4 705s scatter.pco ade4 705s score.acm ade4 705s score.mix ade4 705s score.pca ade4 705s screeplot.dudi ade4 705s > pdf("s.match.pdf") 705s > 705s > X <- data.frame(x = runif(50, -1, 2), y = runif(50, -1, 2)) 705s > Y <- X + rnorm(100, sd = 0.3) 705s > 705s > g1 <- s.match(X, Y, ppoints.cex = 0, col = c("blue", "red")) 705s > g2 <- s.match(X, Y, arr = FALSE, ppoints.cex = 2, ppoints.col = c("blue", "green")) 705s > g3 <- s.match(X, Y, arr = FALSE) 705s > g4 <- s.match(X, Y, arrows = TRUE, plabels = list(alpha = 1, col = "black", cex = 1), plines = list(col = "red"), panel.background = list(col = "antiquewhite")) 705s > 705s 705s R version 4.3.2 (2023-10-31) -- "Eye Holes" 705s Copyright (C) 2023 The R Foundation for Statistical Computing 705s Platform: x86_64-pc-linux-gnu (64-bit) 705s 705s R is free software and comes with ABSOLUTELY NO WARRANTY. 705s You are welcome to redistribute it under certain conditions. 705s Type 'license()' or 'licence()' for distribution details. 705s 705s R is a collaborative project with many contributors. 705s Type 'contributors()' for more information and 705s 'citation()' on how to cite R or R packages in publications. 705s 705s Type 'demo()' for some demos, 'help()' for on-line help, or 705s 'help.start()' for an HTML browser interface to help. 705s Type 'q()' to quit R. 705s 705s > library(adegraphics) 706s Registered S3 methods overwritten by 'adegraphics': 706s method from 706s biplot.dudi ade4 706s kplot.foucart ade4 706s kplot.mcoa ade4 706s kplot.mfa ade4 706s kplot.pta ade4 706s kplot.sepan ade4 706s kplot.statis ade4 706s scatter.coa ade4 706s scatter.dudi ade4 706s scatter.nipals ade4 706s scatter.pco ade4 706s score.acm ade4 706s score.mix ade4 706s score.pca ade4 706s screeplot.dudi ade4 706s > pdf("s.traject.pdf") 706s > 706s > rw <- function(a){ 706s + x <- 0 706s + for(i in 1:49) 706s + x <- c(x, x[length(x)] + runif(1, -1, 1)) 706s + x 706s + } 706s > 706s > x <- unlist(lapply(1:5, rw), use.names = FALSE) 706s > y <- unlist(lapply(1:5, rw), use.names = FALSE) 706s > z <- gl(5, 50) 706s > g1 <- s.traject(data.frame(x, y), z, ppoints.pch = 19:23, plines.col = rainbow(5)) 706s > 706s > x <- unlist(lapply(1:2, rw), use.names = FALSE) 706s > y <- unlist(lapply(1:2, rw), use.names = FALSE) 706s > z <- gl(2, 50) 706s > g2 <- s.traject(data.frame(x, y), z, ppoints.pch = 21:20, plines.col = 1:2) 706s > 706s 706s R version 4.3.2 (2023-10-31) -- "Eye Holes" 706s Copyright (C) 2023 The R Foundation for Statistical Computing 706s Platform: x86_64-pc-linux-gnu (64-bit) 706s 706s R is free software and comes with ABSOLUTELY NO WARRANTY. 706s You are welcome to redistribute it under certain conditions. 706s Type 'license()' or 'licence()' for distribution details. 706s 706s R is a collaborative project with many contributors. 706s Type 'contributors()' for more information and 706s 'citation()' on how to cite R or R packages in publications. 706s 706s Type 'demo()' for some demos, 'help()' for on-line help, or 706s 'help.start()' for an HTML browser interface to help. 706s Type 'q()' to quit R. 706s 707s > library(adegraphics) 707s Registered S3 methods overwritten by 'adegraphics': 707s method from 707s biplot.dudi ade4 707s kplot.foucart ade4 707s kplot.mcoa ade4 707s kplot.mfa ade4 707s kplot.pta ade4 707s kplot.sepan ade4 707s kplot.statis ade4 707s scatter.coa ade4 707s scatter.dudi ade4 707s scatter.nipals ade4 707s scatter.pco ade4 707s score.acm ade4 707s score.mix ade4 707s score.pca ade4 707s screeplot.dudi ade4 707s > pdf("s.value.pdf") 707s > 707s > ## ex1 707s > xy <- cbind.data.frame(x = runif(50, -1, 1), y = runif(50, 0, 2)) 707s > z <- rnorm(50) 707s > z <- sapply(z, function(X) max(X, -3)) 707s > z <- sapply(z, function(X) min(X, 3)) 707s > val1 <- s.value(xy, z, method = "size", symbol = "square", plot = F) 707s > val2 <- s.value(xy, z, method = "color", symbol = "square", plot = F) 707s > val3 <- s.value(xy, z, method = "size", symbol = "circle", plot = F) 707s > val4 <- s.value(xy, z, method = "color", symbol = "circle", plot = F) 707s > g1 <- ADEgS(c(val1, val2, val3, val4), positions = layout2position(matrix(c(1, 2, 3, 4), 2, 2)), add = matrix(0, ncol = 4, nrow = 4)) 707s > g2 <- s.value(xy, z, method = "color", symbol = "square", breaks = c(-3, -1, -0.5, 0, 0.5, 1, 3)) 707s > g3 <- s.value(xy, z, method = "color", col = colorRampPalette(c("yellow", "blue"))(6)) 707s > g4 <- s.value(xy, z, method = "size", symbol = "circle", paxes.draw = FALSE) 708s > 708s > ## ex2 708s > xx <- runif(100) * 100 708s > yy <- 1:100 708s > zz <- 1:100 708s > breaks <- c(0, 25, 50, 75, 100) 708s > g5 <- s.value(data.frame(xx, yy), zz, breaks = breaks, method = "color", paxes.draw = TRUE, porigin.include = FALSE) 708s > g6 <- s.value(data.frame(xx, yy), cbind(zz, rev(zz)), breaks = breaks, method = "color", col = c("blue", "red", "green", "yellow"), paxes.draw = TRUE) 708s > g7 <- s.value(data.frame(xx, yy), cbind(zz, rev(zz)), nclass = c(2, 6), method = "color", col = c("blue", "red", "pink", "green", "yellow"), paxes.draw = TRUE) 708s > 708s > ## ex3 708s > data(rpjdl, package = "ade4") 708s > fau.coa <- ade4::dudi.coa(rpjdl$fau, scan = FALSE, nf = 3) 708s > val5 <- s.value(fau.coa$li, fau.coa$li[,3], plot = FALSE) 708s > val6 <- s.value(fau.coa$li, fau.coa$li[, 3], center = 0, method = "size", symbol = "circle", col = c("yellow", "red"), plot = FALSE) 708s > g8 <- ADEgS(c(val5, val6), positions = layout2position(matrix(c(1, 2), 1, 2)), add = matrix(0, ncol = 2, nrow = 2)) 708s > 708s > ## ex3 708s > data(doubs, package = "ade4") 708s > g9 <- s.value(doubs$xy, doubs$env[, 1:2]) 708s > g10 <- s.value(doubs$xy, doubs$env) 709s > 709s 709s R version 4.3.2 (2023-10-31) -- "Eye Holes" 709s Copyright (C) 2023 The R Foundation for Statistical Computing 709s Platform: x86_64-pc-linux-gnu (64-bit) 709s 709s R is free software and comes with ABSOLUTELY NO WARRANTY. 709s You are welcome to redistribute it under certain conditions. 709s Type 'license()' or 'licence()' for distribution details. 709s 709s R is a collaborative project with many contributors. 709s Type 'contributors()' for more information and 709s 'citation()' on how to cite R or R packages in publications. 709s 709s Type 'demo()' for some demos, 'help()' for on-line help, or 709s 'help.start()' for an HTML browser interface to help. 709s Type 'q()' to quit R. 709s 709s > library(ade4) 709s > library(adegraphics) 709s Registered S3 methods overwritten by 'adegraphics': 709s method from 709s biplot.dudi ade4 709s kplot.foucart ade4 709s kplot.mcoa ade4 709s kplot.mfa ade4 709s kplot.pta ade4 709s kplot.sepan ade4 709s kplot.statis ade4 709s scatter.coa ade4 709s scatter.dudi ade4 709s scatter.nipals ade4 709s scatter.pco ade4 709s score.acm ade4 709s score.mix ade4 709s score.pca ade4 709s screeplot.dudi ade4 709s 709s Attaching package: 'adegraphics' 709s 709s The following objects are masked from 'package:ade4': 709s 709s kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image, 709s s.label, s.logo, s.match, s.traject, s.value, table.value, 709s triangle.class 709s 709s > pdf("s1d.barchart.pdf") 709s > 709s > ## 1 : reverse and horizontal 709s > set.seed(40) 709s > x1 <- rnorm(10) 709s > g11 <- s1d.barchart(x1) 710s > g12 <- s1d.barchart(x1, ppoly.col = "blue") 710s > 710s > g21 <- s1d.barchart(x1, p1d.hori = FALSE, p1d.rev = TRUE) 710s > g23 <- s1d.barchart(x1, p1d.hori = FALSE, p1d.rev = FALSE) 710s > g24 <- s1d.barchart(x1, p1d.hori = TRUE, p1d.rev = TRUE) 710s > g24 <- s1d.barchart(x1, p1d.hori = TRUE, p1d.rev = FALSE) 710s > 710s > ## 2 : at and sort 710s > data(rpjdl, package = "ade4") 710s > rpjdl.coa <- ade4::dudi.coa(rpjdl$fau, scannf = FALSE, nf = 4) 710s > nam <- rownames(rpjdl.coa$co) 710s > gg1 <- s1d.barchart(rpjdl.coa$co[, 1]) 710s > gg2 <- s1d.barchart(rpjdl.coa$co[, 1], labels = nam, at = 51:1) 710s > gg3 <- s1d.barchart(rpjdl.coa$co[, 1], labels = nam, sort = TRUE) 710s > gg4 <- s1d.barchart(rpjdl.coa$co[, 1], labels = nam, sort = TRUE, at = 51:1) # 'at' is ignored 710s > gg5 <- s1d.barchart(rpjdl.coa$co, labels = nam, sort = TRUE) 710s > gg6 <- s1d.barchart(rpjdl.coa$co, labels = nam, sort = FALSE) 710s > stopifnot(gg6[[1]]@data$labels == gg6[[2]]@data$labels) 710s > 710s 710s R version 4.3.2 (2023-10-31) -- "Eye Holes" 710s Copyright (C) 2023 The R Foundation for Statistical Computing 710s Platform: x86_64-pc-linux-gnu (64-bit) 710s 710s R is free software and comes with ABSOLUTELY NO WARRANTY. 710s You are welcome to redistribute it under certain conditions. 710s Type 'license()' or 'licence()' for distribution details. 710s 710s R is a collaborative project with many contributors. 710s Type 'contributors()' for more information and 710s 'citation()' on how to cite R or R packages in publications. 710s 710s Type 'demo()' for some demos, 'help()' for on-line help, or 710s 'help.start()' for an HTML browser interface to help. 710s Type 'q()' to quit R. 710s 710s > library(adegraphics) 711s Registered S3 methods overwritten by 'adegraphics': 711s method from 711s biplot.dudi ade4 711s kplot.foucart ade4 711s kplot.mcoa ade4 711s kplot.mfa ade4 711s kplot.pta ade4 711s kplot.sepan ade4 711s kplot.statis ade4 711s scatter.coa ade4 711s scatter.dudi ade4 711s scatter.nipals ade4 711s scatter.pco ade4 711s score.acm ade4 711s score.mix ade4 711s score.pca ade4 711s screeplot.dudi ade4 711s > pdf("s1d.boxplot.pdf") 711s > 711s > ## ex1 711s > x <- c(rnorm(10), rnorm(10)) 711s > fact <- factor(rep(c("A", "B"), 10)) 711s > g11 <- s1d.boxplot(x, fact) 711s > g12 <- s1d.boxplot(x, fact, col = TRUE) 711s > g12 <- s1d.boxplot(x, fact, col = 2:3) 711s > g12 <- s1d.boxplot(x, fact, col = TRUE, plines.col = "black") 711s > 711s > g2 <- s1d.boxplot(x, fact, ppolygon.border = c("red", "blue"), box.rectangle = list(alpha = 1, fill = "green")) 711s > 711s > ## ex2 711s > w1 <- rnorm(100, -1) 711s > w2 <- rnorm(100) 711s > w3 <- rnorm(100, 1) 711s > f1 <- gl(3, 100) 711s > f2 <- gl(30, 10) 711s > g3 <- s1d.boxplot(c(w1, w2, w3), f1) 711s > g4 <- s1d.boxplot(c(w1, w2, w3), f2) 711s > g5 <- s1d.boxplot(c(w1, w2, w3), f2, p1d.rug.draw = FALSE) 711s > 711s > mat <- matrix(0, ncol = 1, nrow = 8) 711s > mat[c(2), ] <- 1 711s > mat[c(3:8), ] <- 2 711s > mat[1, ] <- 3 711s > g6 <- ADEgS(c(g3, g4, s1d.label(c(w1, w2, w3), p1d = list(rug = list(tck = 0.8), rev = TRUE), ppoints.cex = 0, plabels.cex = 0, plot = F, pgrid.draw = F)), 711s + layout = matrix((rev(mat)), ncol = 1)) 711s > g7 <- s1d.boxplot(c(w1, w2, w3), data.frame(f1, f2)) 712s > 712s > ## ex3 712s > data(banque, package = "ade4") 712s > banque.acm <- ade4::dudi.acm(banque, scan = FALSE, nf = 4) 712s > s1d.boxplot(banque.acm$l1[, 1], banque[, 1:7], plabels.cex = 1.8) 712s > 712s > 712s 712s R version 4.3.2 (2023-10-31) -- "Eye Holes" 712s Copyright (C) 2023 The R Foundation for Statistical Computing 712s Platform: x86_64-pc-linux-gnu (64-bit) 712s 712s R is free software and comes with ABSOLUTELY NO WARRANTY. 712s You are welcome to redistribute it under certain conditions. 712s Type 'license()' or 'licence()' for distribution details. 712s 712s R is a collaborative project with many contributors. 712s Type 'contributors()' for more information and 712s 'citation()' on how to cite R or R packages in publications. 712s 712s Type 'demo()' for some demos, 'help()' for on-line help, or 712s 'help.start()' for an HTML browser interface to help. 712s Type 'q()' to quit R. 712s 712s > library(adegraphics) 713s Registered S3 methods overwritten by 'adegraphics': 713s method from 713s biplot.dudi ade4 713s kplot.foucart ade4 713s kplot.mcoa ade4 713s kplot.mfa ade4 713s kplot.pta ade4 713s kplot.sepan ade4 713s kplot.statis ade4 713s scatter.coa ade4 713s scatter.dudi ade4 713s scatter.nipals ade4 713s scatter.pco ade4 713s score.acm ade4 713s score.mix ade4 713s score.pca ade4 713s screeplot.dudi ade4 713s > pdf("s1d.class.pdf") 713s > data(meau, package = "ade4") 713s > 713s > ## ex1 713s > envpca <- ade4::dudi.pca(meau$env, scannf = FALSE) 713s > g1 <- s1d.class(envpca$li[, 1], poslab = "value", meau$design$season, col = 1:6) 713s > update(g1, p1d.horizontal = FALSE) 713s > update(g1, p1d.reverse = TRUE) 713s > g2 <- s1d.class(envpca$li[, 1], meau$design$season, col = 1:6, p1d.reverse = TRUE) 713s > g3 <- s1d.class(envpca$li[, 1], meau$design$season, col = 1:6, p1d.hori = F) 713s > 713s > ## ex2 713s > set.seed(0) 713s > score1 <- c(rnorm(3, mean = 0, sd = 0.5), rnorm(3, mean = 1, sd = 0.5), rnorm(5, mean = 2, sd = 0.5)) 713s > factor1 <- factor(rep(LETTERS[1:3], times = c(3, 3, 5))) 713s > g41 <- s1d.class(score1, factor1) 713s > g42 <- s1d.class(score1, factor1, col = 1:3) 713s > g43 <- s1d.class(score1, factor1, col = TRUE) 713s > g44 <- s1d.class(score1, factor1, col = FALSE) 713s > g45 <- s1d.class(score1, factor1, plines.col = "grey") 713s > g46 <- s1d.class(score1, factor1, plines.col = "grey", col = TRUE) 713s > 713s > ## ex3 713s > score2 <- c(rnorm(10, mean = 0, sd = 0.5), rnorm(15, mean = -1, sd = 0.2), rnorm(10, mean = 2, sd = 0.5)) 713s > factor2 <- factor(rep(c(1, 3, 2), times = c(10, 15, 10))) 713s > levels(factor2) <- c("mean0", "mean2", "mean-1") 713s > g5 <- s1d.class(score2, factor2, col = 1:3) 713s > update(g5, posla = "value") 713s > 713s > indx <- rank(rnorm(35)) 713s > factor2 <- factor2[rank(indx)] 713s > s1d.class(score2[indx], factor2[indx], col = 1:3, posla = "regular") 713s > 713s > 713s 713s R version 4.3.2 (2023-10-31) -- "Eye Holes" 713s Copyright (C) 2023 The R Foundation for Statistical Computing 713s Platform: x86_64-pc-linux-gnu (64-bit) 713s 713s R is free software and comes with ABSOLUTELY NO WARRANTY. 713s You are welcome to redistribute it under certain conditions. 713s Type 'license()' or 'licence()' for distribution details. 713s 713s R is a collaborative project with many contributors. 713s Type 'contributors()' for more information and 713s 'citation()' on how to cite R or R packages in publications. 713s 713s Type 'demo()' for some demos, 'help()' for on-line help, or 713s 'help.start()' for an HTML browser interface to help. 713s Type 'q()' to quit R. 713s 713s > library(adegraphics) 714s Registered S3 methods overwritten by 'adegraphics': 714s method from 714s biplot.dudi ade4 714s kplot.foucart ade4 714s kplot.mcoa ade4 714s kplot.mfa ade4 714s kplot.pta ade4 714s kplot.sepan ade4 714s kplot.statis ade4 714s scatter.coa ade4 714s scatter.dudi ade4 714s scatter.nipals ade4 714s scatter.pco ade4 714s score.acm ade4 714s score.mix ade4 714s score.pca ade4 714s screeplot.dudi ade4 714s > pdf("s1d.density.pdf") 714s > 714s > set.seed(40) 714s > x1 <- rnorm(1000) 714s > g11 <- s1d.density(x1) 714s > g12 <- s1d.density(x1, col = FALSE, ppoly.col = "blue", p1d.rev = TRUE) 714s > g13 <- s1d.density(x1, col = TRUE, ppoly.col = "blue", p1d.hori = FALSE) 714s > g14 <- s1d.density(x1, col = TRUE, p1d.hori = FALSE, p1d.rev = TRUE) 714s > 714s > update(g11, ppolygons.border = "red") 714s > update(g11, col = FALSE, ppolygons.col = "black") 714s > update(g11, ppolygons.lwd = 3, ppolygons.lty = 3, ppolygons.alpha = 1) 714s > update(g11, ylim = c(-0.04, 0.5)) 714s > 714s > set.seed(50) 714s > x2 <- c(rnorm(1000, mean = -0.5, sd = 0.5), rnorm(1000, mean = 1)) 714s > fact <- rep(c("A", "B"), each = 1000) 714s > g21 <- s1d.density(x2, fact, col = c("red", "blue")) 714s > g22 <- s1d.density(x2, fact, col = FALSE, ppoly.col = 2:3) 715s > g23 <- s1d.density(x2, fact, col = FALSE, ppoly.col = 2:3, p1d.rev = TRUE) 715s > g24 <- s1d.density(x2, fact, col = FALSE, ppoly.col = 2:3, p1d.horizontal = FALSE) 715s > g25 <- s1d.density(x2, fact, col = FALSE, ppoly.col = 2:3, p1d.horizontal = FALSE, p1d.rev = TRUE) 715s > 715s > set.seed(60) 715s > x3 <- rnorm(1000) 715s > g31 <- s1d.density(x3) 715s > g32 <- s1d.density(x3, p1d.rug.draw = FALSE) 715s > g33 <- s1d.density(x3, p1d.rug.draw = FALSE, p1d.rev = TRUE) 715s > g34 <- s1d.density(x3, p1d.rug.draw = FALSE, p1d.hori = FALSE) 715s > g35 <- s1d.density(x3, p1d.rug.draw = FALSE, p1d.hori = FALSE, p1d.rev = TRUE) 715s > 715s > update(g31, p1d.rev = TRUE) 715s > update(g32, p1d.rev = TRUE) 715s > update(g33, p1d.rev = FALSE) 715s > update(g34, p1d.rev = TRUE) 715s > update(g35, p1d.rev = FALSE) 715s > 715s > 715s 715s R version 4.3.2 (2023-10-31) -- "Eye Holes" 715s Copyright (C) 2023 The R Foundation for Statistical Computing 715s Platform: x86_64-pc-linux-gnu (64-bit) 715s 715s R is free software and comes with ABSOLUTELY NO WARRANTY. 715s You are welcome to redistribute it under certain conditions. 715s Type 'license()' or 'licence()' for distribution details. 715s 715s R is a collaborative project with many contributors. 715s Type 'contributors()' for more information and 715s 'citation()' on how to cite R or R packages in publications. 715s 715s Type 'demo()' for some demos, 'help()' for on-line help, or 715s 'help.start()' for an HTML browser interface to help. 715s Type 'q()' to quit R. 715s 715s > library(adegraphics) 715s Registered S3 methods overwritten by 'adegraphics': 715s method from 715s biplot.dudi ade4 715s kplot.foucart ade4 715s kplot.mcoa ade4 715s kplot.mfa ade4 715s kplot.pta ade4 715s kplot.sepan ade4 715s kplot.statis ade4 715s scatter.coa ade4 715s scatter.dudi ade4 715s scatter.nipals ade4 715s scatter.pco ade4 715s score.acm ade4 715s score.mix ade4 715s score.pca ade4 715s screeplot.dudi ade4 716s > pdf("s1d.distri.pdf") 716s > 716s > ## ex1 716s > score <- rnorm(10) 716s > df <- data.frame(matrix(rep(c(1, 2), 10), ncol = 2)) 716s > g1 <- s1d.distri(score, df) 716s > 716s > ## ex2 716s > set.seed(1) 716s > w <- seq(-1, 1, le = 200) 716s > distri <- data.frame(lapply(1:50, function(x) sample(200:1) * ((w >= (- x / 50)) & (w <= x / 50)))) 716s > names(distri) <- paste("w", 1:50, sep = "") 716s > g2 <- s1d.distri(w, distri) 716s > g3 <- s1d.distri(w, distri, yrank = TRUE, sdS = 1.5) 716s > 716s > g4 <- s1d.distri(w, distri, p1d.rug.draw = FALSE) 716s > g5 <- s1d.distri(w, distri, p1d.reverse = TRUE) 716s > g6 <- s1d.distri(w, distri, p1d.hori = FALSE) 716s > g7 <- s1d.distri(w, distri, p1d.hori = FALSE, p1d.reverse = TRUE) 716s > 716s > update(g2, p1d.rug.draw = FALSE) 716s > update(g5, p1d.rug.draw = FALSE) 716s > 717s 717s R version 4.3.2 (2023-10-31) -- "Eye Holes" 717s Copyright (C) 2023 The R Foundation for Statistical Computing 717s Platform: x86_64-pc-linux-gnu (64-bit) 717s 717s R is free software and comes with ABSOLUTELY NO WARRANTY. 717s You are welcome to redistribute it under certain conditions. 717s Type 'license()' or 'licence()' for distribution details. 717s 717s R is a collaborative project with many contributors. 717s Type 'contributors()' for more information and 717s 'citation()' on how to cite R or R packages in publications. 717s 717s Type 'demo()' for some demos, 'help()' for on-line help, or 717s 'help.start()' for an HTML browser interface to help. 717s Type 'q()' to quit R. 717s 717s > library(adegraphics) 717s Registered S3 methods overwritten by 'adegraphics': 717s method from 717s biplot.dudi ade4 717s kplot.foucart ade4 717s kplot.mcoa ade4 717s kplot.mfa ade4 717s kplot.pta ade4 717s kplot.sepan ade4 717s kplot.statis ade4 717s scatter.coa ade4 717s scatter.dudi ade4 717s scatter.nipals ade4 717s scatter.pco ade4 717s score.acm ade4 717s score.mix ade4 717s score.pca ade4 717s screeplot.dudi ade4 717s > pdf("s1d.gauss.pdf") 717s > 717s > data(meau, package= "ade4") 717s > envpca <- ade4::dudi.pca(meau$env, scannf = FALSE) 717s > dffac <- cbind.data.frame(meau$design$season, meau$design$site) 717s > g11 <- s1d.gauss(envpca$li[, 1], dffac[, 1]) 717s > g12 <- s1d.gauss(envpca$li[, 1], dffac[, 1], p1d.rev = TRUE) 717s > g13 <- s1d.gauss(envpca$li[, 1], dffac[, 1], p1d.hori = FALSE) 717s > g14 <- s1d.gauss(envpca$li[, 1], dffac[, 1], p1d.hori = FALSE, p1d.rev = TRUE) 717s > 717s > g2 <- s1d.gauss(envpca$li[, 1], dffac[, 1], ppoly.col = 1:4, fill = TRUE, plines.col = 1:4, col = FALSE) 718s > 718s > g31 <- s1d.gauss(envpca$li[, 1], dffac[, 2], ppoly.col = 1:4, paxes.draw = TRUE, ylim = c(0, 2), fill = TRUE, p1d.hori = FALSE) 718s > g32 <- s1d.gauss(envpca$li[, 1], dffac[, 2], ppoly.col = 1:4, paxes.draw = TRUE, fill = TRUE, p1d.hori = FALSE) 718s > 718s > g4 <- s1d.gauss(envpca$li[, 1], fac = dffac, fill = TRUE, col = 1:5) 718s > g5 <- s1d.gauss(envpca$li[, 1], fac = dffac, fill = TRUE, col = FALSE, ppoly.col = 1:6) 718s > g6 <- s1d.gauss(envpca$li[, 1], fac = dffac[, 1], fill = TRUE, col = 1:6, ppoly.col = 1:6) 718s > 718s > g7 <- s1d.gauss(envpca$li[, 1], fac = dffac, fill = TRUE, col = 1:6, ppoly.col = 1:6, steps = 10) 718s > g8 <- s1d.gauss(envpca$li[, 1], dffac[, 2]) 718s > 718s > update(g11, p1d.reverse = TRUE) 718s > update(g12, p1d.reverse = FALSE) 718s > update(g13, p1d.reverse = TRUE) 718s > update(g14, p1d.reverse = FALSE) 718s > 718s 718s R version 4.3.2 (2023-10-31) -- "Eye Holes" 718s Copyright (C) 2023 The R Foundation for Statistical Computing 718s Platform: x86_64-pc-linux-gnu (64-bit) 718s 718s R is free software and comes with ABSOLUTELY NO WARRANTY. 718s You are welcome to redistribute it under certain conditions. 718s Type 'license()' or 'licence()' for distribution details. 718s 718s R is a collaborative project with many contributors. 718s Type 'contributors()' for more information and 718s 'citation()' on how to cite R or R packages in publications. 718s 718s Type 'demo()' for some demos, 'help()' for on-line help, or 718s 'help.start()' for an HTML browser interface to help. 718s Type 'q()' to quit R. 718s 718s > library(ade4) 719s > library(adegraphics) 719s Registered S3 methods overwritten by 'adegraphics': 719s method from 719s biplot.dudi ade4 719s kplot.foucart ade4 719s kplot.mcoa ade4 719s kplot.mfa ade4 719s kplot.pta ade4 719s kplot.sepan ade4 719s kplot.statis ade4 719s scatter.coa ade4 719s scatter.dudi ade4 719s scatter.nipals ade4 719s scatter.pco ade4 719s score.acm ade4 719s score.mix ade4 719s score.pca ade4 719s screeplot.dudi ade4 719s 719s Attaching package: 'adegraphics' 719s 719s > pdf("s1d.hist.pdf") 719s The following objects are masked from 'package:ade4': 719s 719s kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image, 719s s.label, s.logo, s.match, s.traject, s.value, table.value, 719s triangle.class 719s 719s > 719s > set.seed(40) 719s > x1 <- rnorm(1000) 719s > g11 <- s1d.hist(x1) 719s > g12 <- s1d.hist(x1, col = 1:10) 719s > g13 <- s1d.hist(x1, col = FALSE, ppoly.col = 1:10) 719s > g14 <- s1d.hist(x1, col = TRUE, ppoly.col = "blue") 719s > 719s > set.seed(50) 719s > x1 <- rnorm(1000) 719s > g21 <- s1d.hist(x1) # p1d.hori = TRUE and p1d.reverse = FALSE by default 719s > # g22 <- s1d.hist(x1, p1d.hori = TRUE, p1d.rev = TRUE) 719s > g23 <- s1d.hist(x1, p1d.hori = FALSE, p1d.rev = FALSE) 719s > # g24 <- s1d.hist(x1, p1d.hori = FALSE, p1d.rev = TRUE) 719s > 719s > 719s > # randtest.pcaiv 719s > data(rpjdl, package = "ade4") 719s > millog <- log(rpjdl$mil + 1) 719s > coa1 <- dudi.coa(rpjdl$fau, scann = FALSE) 719s > caiv1 <- pcaiv(coa1, millog, scan = FALSE) 719s > set.seed(50) 719s > rd11 <- randtest(caiv1) 719s > plot(rd11) 720s > set.seed(50) 720s > rd12 <- randtest(caiv1, output = "full") 720s > plot(rd12, nclass = 15) # must be the same output as rd11 720s > set.seed(50) 720s > rd13 <- randtest(caiv1, output = "full") 720s > plot(rd13, nclass = 8) 720s > plot(rd13, nclass = 8, plines.col = "red") 720s > plot(rd13, nclass = 8, obs.plines.col = "red") 720s > plot(rd13, nclass = 8, sim.plines.col = "red") 720s > 720s > # randtest.dpcoa 720s > data(humDNAm, package = "ade4") 720s > dpcoahum <- dpcoa(data.frame(t(humDNAm$samples)), sqrt(humDNAm$distances), scan = FALSE, nf = 2) 720s > set.seed(50) 720s > rd21 <- randtest(dpcoahum) 720s > plot(rd21) 720s > rd22 <- randtest(dpcoahum, output = "full") 721s > plot(rd22) 721s > 721s > # randtest.amova (plot.krandtest) 721s > amovahum <- amova(humDNAm$samples, sqrt(humDNAm$distances), humDNAm$structures) 721s > set.seed(50) 721s > rd31 <- randtest(amovahum, 49) 721s > plot(rd31) 721s > plot(rd31, plines.col = "red") 721s > plot(rd31, g1.plines.col = "red") 722s > set.seed(50) 722s > rd32 <- randtest(amovahum, 49, output = "full") 722s > plot(rd32) 722s > plot(rd32, plines.col = "red") 722s > plot(rd32, g1.plines.col = "red") 722s > plot(rd32, nclass = 30, g2.pback.col = "lightblue") 722s > 722s > # randtest.coinertia 722s > data(doubs, package = "ade4") 722s > dudi1 <- dudi.pca(doubs$env, scale = TRUE, scan = FALSE, nf = 3) 722s > dudi2 <- dudi.pca(doubs$fish, scale = FALSE, scan = FALSE, nf = 2) 722s > coin1 <- coinertia(dudi1,dudi2, scan = FALSE, nf = 2) 722s > set.seed(50) 722s > rd4 <- randtest(coin1) 722s > plot(rd4) 723s > 723s > # randtest.pcaivortho 723s > data(rpjdl, package = "ade4") 723s > millog <- log(rpjdl$mil + 1) 723s > coa1 <- dudi.coa(rpjdl$fau, scann = FALSE) 723s > caiv1 <- pcaiv(coa1, millog, scan = FALSE) 723s > set.seed(50) 723s > rd5 <- randtest(caiv1) 723s > plot(rd5) 723s > 723s > # randtest.rlq (plot.krandtest) 723s > data(aviurba, package = "ade4") 723s > coa1 <- dudi.coa(aviurba$fau, scannf = FALSE, nf = 2) 723s > dudimil <- dudi.hillsmith(aviurba$mil, scannf = FALSE, nf = 2, row.w = coa1$lw) 723s > duditrait <- dudi.hillsmith(aviurba$traits, scannf = FALSE, nf = 2, row.w = coa1$cw) 723s > rlq1 <- rlq(dudimil, coa1, duditrait, scannf = FALSE, nf = 2) 723s > set.seed(50) 723s > rd6 <- randtest(rlq1) 723s > plot(rd6) 723s > 723s > # randtest.between 723s > data(meaudret, package = "ade4") 723s > pca1 <- dudi.pca(meaudret$env, scan = FALSE, nf = 3) 723s > set.seed(50) 723s > rd7 <- randtest(bca(pca1, meaudret$design$season, scan = FALSE), 99) 723s > plot(rd7, main = "Monte-Carlo test") 723s > 723s > # randtest.discrimin 723s > set.seed(50) 723s > rd8 <- randtest(discrimin(pca1, meaudret$design$season, scan = FALSE), 99) 723s > plot(rd8, main = "Monte-Carlo test") 723s > 723s 723s R version 4.3.2 (2023-10-31) -- "Eye Holes" 723s Copyright (C) 2023 The R Foundation for Statistical Computing 723s Platform: x86_64-pc-linux-gnu (64-bit) 723s 723s R is free software and comes with ABSOLUTELY NO WARRANTY. 723s You are welcome to redistribute it under certain conditions. 723s Type 'license()' or 'licence()' for distribution details. 723s 723s R is a collaborative project with many contributors. 723s Type 'contributors()' for more information and 723s 'citation()' on how to cite R or R packages in publications. 723s 723s Type 'demo()' for some demos, 'help()' for on-line help, or 723s 'help.start()' for an HTML browser interface to help. 723s Type 'q()' to quit R. 723s 723s > library(adegraphics) 724s Registered S3 methods overwritten by 'adegraphics': 724s method from 724s biplot.dudi ade4 724s kplot.foucart ade4 724s kplot.mcoa ade4 724s kplot.mfa ade4 724s kplot.pta ade4 724s kplot.sepan ade4 724s kplot.statis ade4 724s scatter.coa ade4 724s scatter.dudi ade4 724s scatter.nipals ade4 724s scatter.pco ade4 724s score.acm ade4 724s score.mix ade4 724s score.pca ade4 724s screeplot.dudi ade4 724s > pdf("s1d.label.pdf") 724s > data(meau, package= "ade4") 724s > 724s > envpca <- ade4::dudi.pca(meau$env, scannf = FALSE) 724s > 724s > g1 <- s1d.label(envpca$l1[, 1], row.names(envpca$l1)) 724s > g2 <- s1d.label(envpca$l1[, 1], row.names(envpca$l1), p1d.hori = F) 724s > g3 <- s1d.label(envpca$l1[, 1], row.names(envpca$l1), plabels.boxes.draw = FALSE, plab.srt = 45, plabel.boxes = list(draw = FALSE)) 724s > g4 <- s1d.label(envpca$co[, 1], row.names(envpca$co), p1d.reverse = TRUE, poslabel = "value") 724s > g5 <- s1d.label(envpca$l1[, 1], row.names(envpca$l1), at = 0, plabel.cex = 0) 724s > 724s 724s R version 4.3.2 (2023-10-31) -- "Eye Holes" 724s Copyright (C) 2023 The R Foundation for Statistical Computing 724s Platform: x86_64-pc-linux-gnu (64-bit) 724s 724s R is free software and comes with ABSOLUTELY NO WARRANTY. 724s You are welcome to redistribute it under certain conditions. 724s Type 'license()' or 'licence()' for distribution details. 724s 724s R is a collaborative project with many contributors. 724s Type 'contributors()' for more information and 724s 'citation()' on how to cite R or R packages in publications. 724s 724s Type 'demo()' for some demos, 'help()' for on-line help, or 724s 'help.start()' for an HTML browser interface to help. 724s Type 'q()' to quit R. 724s 725s > library(adegraphics) 725s Registered S3 methods overwritten by 'adegraphics': 725s method from 725s biplot.dudi ade4 725s kplot.foucart ade4 725s kplot.mcoa ade4 725s kplot.mfa ade4 725s kplot.pta ade4 725s kplot.sepan ade4 725s kplot.statis ade4 725s scatter.coa ade4 725s scatter.dudi ade4 725s scatter.nipals ade4 725s scatter.pco ade4 725s score.acm ade4 725s score.mix ade4 725s score.pca ade4 725s screeplot.dudi ade4 725s > pdf("s1d.match.pdf") 725s > 725s > g1 <- s1d.match(-5:5, 2 * (-5:5)) 725s > g2 <- s1d.match(rnorm(10), runif(10), p1d.hor = FALSE) 725s > g3 <- s1d.match(1:5, 7:11, p1d.hor = F, p1d.rev = T) 725s > 725s 725s R version 4.3.2 (2023-10-31) -- "Eye Holes" 725s Copyright (C) 2023 The R Foundation for Statistical Computing 725s Platform: x86_64-pc-linux-gnu (64-bit) 725s 725s R is free software and comes with ABSOLUTELY NO WARRANTY. 725s You are welcome to redistribute it under certain conditions. 725s Type 'license()' or 'licence()' for distribution details. 725s 725s R is a collaborative project with many contributors. 725s Type 'contributors()' for more information and 725s 'citation()' on how to cite R or R packages in publications. 725s 725s Type 'demo()' for some demos, 'help()' for on-line help, or 725s 'help.start()' for an HTML browser interface to help. 725s Type 'q()' to quit R. 725s 725s > library(adegraphics) 726s Registered S3 methods overwritten by 'adegraphics': 726s method from 726s biplot.dudi ade4 726s kplot.foucart ade4 726s kplot.mcoa ade4 726s kplot.mfa ade4 726s kplot.pta ade4 726s kplot.sepan ade4 726s kplot.statis ade4 726s scatter.coa ade4 726s scatter.dudi ade4 726s scatter.nipals ade4 726s scatter.pco ade4 726s score.acm ade4 726s score.mix ade4 726s score.pca ade4 726s screeplot.dudi ade4 726s > pdf("table.image.pdf") 726s > 726s > ## ex1 726s > x <- 1:4 726s > y <- 1:4 726s > df <- data.frame(as.matrix(cbind(x, y))) 726s > g1 <- table.image(df, col = 2:4) 726s > update(g1, plegend.drawColorKey = TRUE) 726s > 726s > ## ex2 726s > df <- matrix(0, 10, 10) 726s > df[1:3, 1:3] <- 5 726s > g2 <- table.image(df) 726s > g3 <- table.image(df, breaks = c(5, 2, 0)) 726s > 726s > ## ex3 726s > data(rpjdl, package = "ade4") 726s > X <- data.frame(t(rpjdl$fau)) 726s > Y <- data.frame(t(rpjdl$mil)) 726s > coa1 <- ade4::dudi.coa(X, scan = FALSE) 726s > x <- rank(coa1$co[, 1]) 726s > y <- rank(coa1$li[, 1]) 726s > g4 <- table.image(Y, coordsx = x, coordsy = 1:8, axis.text = list(alpha = 0), pgrid.col = "black", pgrid.lwd = 0.8, col = c("white", "black"), plegend.drawKey = FALSE) 726s > g5 <- table.image(X, coordsx = x, coordsy = y, ptable = list(x = list(tck = 0), y = list(tck = 4)), pleg.drawKey = FALSE, labelsy = paste(" ", row.names(X), sep = "")) 726s > g6 <- ADEgS(list(g4, g5), positions = rbind(c(0, 0, 1, 0.3), c(0, 0.4, 1, 1))) 727s > 727s 727s R version 4.3.2 (2023-10-31) -- "Eye Holes" 727s Copyright (C) 2023 The R Foundation for Statistical Computing 727s Platform: x86_64-pc-linux-gnu (64-bit) 727s 727s R is free software and comes with ABSOLUTELY NO WARRANTY. 727s You are welcome to redistribute it under certain conditions. 727s Type 'license()' or 'licence()' for distribution details. 727s 727s R is a collaborative project with many contributors. 727s Type 'contributors()' for more information and 727s 'citation()' on how to cite R or R packages in publications. 727s 727s Type 'demo()' for some demos, 'help()' for on-line help, or 727s 'help.start()' for an HTML browser interface to help. 727s Type 'q()' to quit R. 727s 727s > library(adegraphics) 727s Registered S3 methods overwritten by 'adegraphics': 727s method from 727s biplot.dudi ade4 727s kplot.foucart ade4 727s kplot.mcoa ade4 727s kplot.mfa ade4 727s kplot.pta ade4 727s kplot.sepan ade4 727s kplot.statis ade4 727s scatter.coa ade4 727s scatter.dudi ade4 727s scatter.nipals ade4 727s scatter.pco ade4 727s score.acm ade4 727s score.mix ade4 727s score.pca ade4 727s screeplot.dudi ade4 727s > pdf("table.value.pdf") 727s > 727s > 727s > ## ex1 727s > data(olympic, package = "ade4") 727s > tab1 <- data.frame(scale(olympic$tab)) 727s > pca <- ade4::dudi.pca(tab1, scann = FALSE) 727s > g1 <- table.value(tab1, axis.line = list(col = "blue"), axis.text = list(col = "grey")) 727s > g2 <- table.value(tab1, coordsx = c(1:5, 10:6)) 727s > g3 <- table.value(tab1, coordsx = c(1:5, 10:8)) 728s > g4 <- table.value(tab1, coordsy = rank(pca$li[, 1]), coordsx = rank(pca$co[, 1]), method = "color") 728s > g5 <- table.value(tab1, coordsy = pca$li[, 1], coordsx = pca$co[, 1], ptable = list(x = list(srt = 90))) 728s > 728s > ## ex2 728s > data(eurodist) 728s > g61 <- table.value(eurodist) 728s > g62 <- table.value(eurodist, store = TRUE, symbol = "circle") 728s > g63 <- table.value(eurodist, store = FALSE, psub.text = "eurodist", psub.position = c(0, -0.04)) 728s > g64 <- table.value(eurodist, ptable.margin = list(b = 17, t = 17, l = 17, r = 17)) 728s > g65 <- table.value(eurodist, ptable.x = list(pos = "bottom"), 728s + ptable.margin = list(b = 17, t = 17, l = 17, r = 17)) 728s > 728s > ## ex3 728s > data("doubs", package = "ade4") 728s > tab2 <- as.table(as.matrix(doubs$fish)) 728s > g8 <- table.value(tab2) 728s > 728s > ## ex4 728s > data(chats, package = "ade4") 728s > tab3 <- as.table(as.matrix(data.frame(t(chats)))) 728s > coa1 <- ade4::dudi.coa(data.frame(t(chats)), scann = FALSE) 728s > adegparold <- adegpar() 728s > adegpar(ptable = list(x = list(pos = "bottom", srt = 0), y = list(pos = "left")), plegend.drawKey = FALSE) 728s > g9 <- table.value(tab3, meanX = TRUE, ablineX = TRUE) 728s > g10 <- table.value(tab3, meanY = TRUE, ablineY = TRUE) 728s > g11 <- table.value(tab3, coordsx = coa1$c1[, 1], coordsy = coa1$l1[, 1], meanX = TRUE, ablineX = TRUE) 728s > g12 <- table.value(tab3, coordsx = coa1$c1[, 1], coordsy = coa1$l1[, 1], meanY = TRUE, ablineY = TRUE) 728s > g13 <- ADEgS(list(g9, g10, g11, g12), pos = rbind(c(0, 0.5, 0.5, 1), c(0.5, 0.5, 1, 1), c(0, 0, 0.5, 0.5), c(0.5, 0, 1, 0.5))) 728s > adegpar(adegparold) 728s > 728s > ## ex5 728s > data(rpjdl, package = "ade4") 728s > tab4 <- data.frame(t(rpjdl$fau)) 728s > coa2 <- ade4::dudi.coa(tab4, scann = FALSE) 728s > g14 <- table.value(tab4, coordsx = coa2$c1[, 1], coordsy = rank(coa2$l1[, 1]), axis.text = list(cex = 0), labelsy = rpjdl$lalab, plot = F) 728s > 728s > ## ex6 728s > tab5 <- as.table(matrix(rep(0, 100), 10)) 728s > tab5[1:5, 1:5] <- 10 728s > ade4::table.cont(tab5, abmean.x = T, y = 10:1) 728s > g15 <- table.value(tab5, coordsy = 10:1, meanX = T) 728s > g16 <- table.value(tab5, coordsy = 10:1, meanX = T, meanY = TRUE, ablineX = TRUE, ablineY = TRUE) 728s > 728s > ## ex7 728s > tab6 <- matrix(rep(0, 100), 10) 728s > tab6[1:5, 1:5] <- 20 728s > colnames(tab6) <- LETTERS[1:10] 728s > rownames(tab6) <- LETTERS[1:10] 728s > ade4::table.value(tab6, x = 1:10, y = 10:1) 728s > g17 <- table.value(tab6, coordsx = 1:10, coordsy = 10:1) 728s > g18 <- table.value(tab6, coordsx = 1:10, coordsy = c(1, 2, 5, 6, 8, 9, 10, 3, 4, 7)) 728s > 728s > 728s > ## ex8 728s > d <- as.dist(matrix(rep(1:5, 5), 5), upper = TRUE) 728s > attr(d, "Labels") <- c ("A", "B", "C", "D", "E") 728s > g4 <- table.value(d) 729s > 729s > ## ex9 729s > data(irishdata, package = "ade4") 729s > d.geo <- dist(irishdata$xy.utm) 729s > g5 <- table.value(d.geo) 729s > 729s 729s R version 4.3.2 (2023-10-31) -- "Eye Holes" 729s Copyright (C) 2023 The R Foundation for Statistical Computing 729s Platform: x86_64-pc-linux-gnu (64-bit) 729s 729s R is free software and comes with ABSOLUTELY NO WARRANTY. 729s You are welcome to redistribute it under certain conditions. 729s Type 'license()' or 'licence()' for distribution details. 729s 729s R is a collaborative project with many contributors. 729s Type 'contributors()' for more information and 729s 'citation()' on how to cite R or R packages in publications. 729s 729s Type 'demo()' for some demos, 'help()' for on-line help, or 729s 'help.start()' for an HTML browser interface to help. 729s Type 'q()' to quit R. 729s 729s > library(adegraphics) 729s Registered S3 methods overwritten by 'adegraphics': 729s method from 729s biplot.dudi ade4 729s kplot.foucart ade4 729s kplot.mcoa ade4 729s kplot.mfa ade4 729s kplot.pta ade4 729s kplot.sepan ade4 729s kplot.statis ade4 729s scatter.coa ade4 729s scatter.dudi ade4 729s scatter.nipals ade4 729s scatter.pco ade4 729s score.acm ade4 729s score.mix ade4 729s score.pca ade4 729s screeplot.dudi ade4 729s > pdf("triangle.pdf") 729s > 729s > ## ex1 729s > data(euro123, package = "ade4") 729s > 729s > dfxyz1 <- rbind.data.frame(euro123$in78, euro123$in86, euro123$in97) 729s > row.names(dfxyz1) <- paste(row.names(euro123$in78), rep(c(1, 2, 3), rep(12, 3)), sep = "") 729s > g1 <- triangle.label(dfxyz1, label = row.names(dfxyz1)) 729s > g2 <- triangle.label(euro123$in86, label = row.names(euro123$in78), plab.cex = 0.8) 730s > g3 <- triangle.match(euro123$in78, euro123$in86) 730s > g4 <- triangle.label(rbind.data.frame(euro123$in78, euro123$in86), plab.cex = 1, addaxes = TRUE, psub = list(text = "Principal axis", cex = 2, pos = "topright")) 730s > g5 <- triangle.label(euro123[[1]], min3 = c(0, 0.2, 0.3), max3 = c(0.5, 0.7, 0.8), plabels.cex = 1, label = row.names(euro123[[1]]), addax = TRUE) 730s > g6 <- triangle.label(euro123[[2]], min3 = c(0, 0.2, 0.3), max3 = c(0.5, 0.7, 0.8), label = row.names(euro123[[1]]), addax = TRUE) 730s > g7 <- triangle.label(euro123[[3]], min3 = c(0, 0.2, 0.3), max3 = c(0.5, 0.7, 0.8), label = row.names(euro123[[1]]), addax = TRUE) 730s > g8 <- triangle.label(rbind.data.frame(euro123[[1]], euro123[[2]], euro123[[3]])) 730s > 730s > ## ex2 730s > dfxyz2 <- cbind.data.frame(a = runif(100), b = runif(100), c = runif(100, 4, 5)) 730s > g9 <- triangle.label(dfxyz2) 730s > 730s > ## ex3 730s > g10 <- triangle.label(dfxyz1) 730s > g11 <- triangle.class(dfxyz1, as.factor(rep("G", 36)), star = 0.5, ellips = 1) 730s > g12 <- triangle.class(dfxyz1, euro123$plan$an) 731s > g13 <- triangle.class(dfxyz1, euro123$plan$pays) 731s > g14 <- triangle.class(dfxyz1, euro123$plan$an, elli = 1, pell.axe.draw = TRUE) 731s > g15 <- triangle.class(dfxyz1, euro123$plan$an, elli = 0, sta = 0, col = c("red", "green", "blue"), pell.axe.draw = TRUE, plab.cex = 2, ppoi.cex = 2, pell.axe.draw = TRUE) 731s > g16 <- triangle.class(dfxyz1, euro123$plan$an, ell = 2, sta = 0.5, pell.axe.draw = TRUE, plab.cex = 1.5) 731s > g17 <- triangle.class(dfxyz1, euro123$plan$an, ell = 0, sta = 1, adjust = FALSE) 731s > g18 <- triangle.class(dfxyz1, euro123$plan$an, ell = 0, sta = 1, chull =c(0.2, 0.25, 0.5, 0.75, 1), adjust = TRUE, showposi = TRUE, col = 10:13, pgrid.draw = FALSE) 731s > 731s autopkgtest [05:38:25]: test run-unit-test: -----------------------] 731s run-unit-test PASS 731s autopkgtest [05:38:25]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 732s autopkgtest [05:38:26]: test pkg-r-autopkgtest: preparing testbed 734s Note, using file '/tmp/autopkgtest.OnMooF/3-autopkgtest-satdep.dsc' to get the build dependencies 734s Reading package lists... 734s Building dependency tree... 734s Reading state information... 734s Starting pkgProblemResolver with broken count: 0 734s Starting 2 pkgProblemResolver with broken count: 0 734s Done 735s The following NEW packages will be installed: 735s dctrl-tools gfortran gfortran-13 gfortran-13-x86-64-linux-gnu 735s gfortran-x86-64-linux-gnu icu-devtools libblas-dev libbz2-dev 735s libgfortran-13-dev libicu-dev libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev 735s liblapack-dev liblzma-dev libncurses-dev libpcre2-16-0 libpcre2-32-0 735s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev 735s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev zlib1g-dev 735s 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. 735s Need to get 33.6 MB of archives. 735s After this operation, 130 MB of additional disk space will be used. 735s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 735s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 735s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 735s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 735s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 735s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 735s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 735s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 735s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 735s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 735s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 735s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 735s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 735s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 735s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 735s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 735s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 735s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 735s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 735s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 735s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 735s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 735s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 735s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 735s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 735s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 735s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 735s Get:28 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 735s Get:29 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 735s Fetched 33.6 MB in 0s (103 MB/s) 735s Selecting previously unselected package dctrl-tools. 735s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 100403 files and directories currently installed.) 735s Preparing to unpack .../00-dctrl-tools_2.24-3build2_amd64.deb ... 735s Unpacking dctrl-tools (2.24-3build2) ... 735s Selecting previously unselected package libgfortran-13-dev:amd64. 735s Preparing to unpack .../01-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 735s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 736s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 736s Preparing to unpack .../02-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 736s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 736s Selecting previously unselected package gfortran-13. 736s Preparing to unpack .../03-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 736s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 736s Selecting previously unselected package gfortran-x86-64-linux-gnu. 736s Preparing to unpack .../04-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 736s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 736s Selecting previously unselected package gfortran. 736s Preparing to unpack .../05-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 736s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 736s Selecting previously unselected package icu-devtools. 736s Preparing to unpack .../06-icu-devtools_74.2-1ubuntu1_amd64.deb ... 736s Unpacking icu-devtools (74.2-1ubuntu1) ... 736s Selecting previously unselected package libblas-dev:amd64. 736s 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.../28-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 737s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 737s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 737s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 737s Setting up libreadline-dev:amd64 (8.2-3) ... 737s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 737s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 737s Setting up libpkgconf3:amd64 (1.8.1-2) ... 737s Setting up icu-devtools (74.2-1ubuntu1) ... 737s Setting up pkgconf-bin (1.8.1-2) ... 737s Setting up liblzma-dev:amd64 (5.4.5-0.3) ... 737s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 737s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 737s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 737s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 737s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ... 737s Setting up libblas-dev:amd64 (3.12.0-3) ... 737s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 737s Setting up dctrl-tools (2.24-3build2) ... 737s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 737s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ... 737s Setting up libpng-dev:amd64 (1.6.43-1) ... 737s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 737s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 737s Setting up pkgconf:amd64 (1.8.1-2) ... 737s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 737s Setting up liblapack-dev:amd64 (3.12.0-3) ... 737s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 737s Setting up pkg-config:amd64 (1.8.1-2) ... 737s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 737s Setting up gfortran (4:13.2.0-7ubuntu1) ... 737s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 737s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 737s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 737s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 737s Setting up r-base-dev (4.3.2-1build1) ... 737s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 737s Processing triggers for libc-bin (2.39-0ubuntu2) ... 737s Processing triggers for man-db (2.12.0-3) ... 739s Processing triggers for install-info (7.1-3) ... 746s Reading package lists... 746s Building dependency tree... 746s Reading state information... 747s Starting pkgProblemResolver with broken count: 0 747s Starting 2 pkgProblemResolver with broken count: 0 747s Done 747s The following NEW packages will be installed: 747s autopkgtest-satdep 747s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 747s Need to get 0 B/696 B of archives. 747s After this operation, 0 B of additional disk space will be used. 747s Get:1 /tmp/autopkgtest.OnMooF/4-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 747s Selecting previously unselected package autopkgtest-satdep. 747s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 101132 files and directories currently installed.) 747s Preparing to unpack .../4-autopkgtest-satdep.deb ... 747s Unpacking autopkgtest-satdep (0) ... 747s Setting up autopkgtest-satdep (0) ... 749s (Reading database ... 101132 files and directories currently installed.) 749s Removing autopkgtest-satdep (0) ... 749s autopkgtest [05:38:43]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 749s autopkgtest [05:38:43]: test pkg-r-autopkgtest: [----------------------- 749s Test: Try to load the R library adegraphics 750s 750s R version 4.3.2 (2023-10-31) -- "Eye Holes" 750s Copyright (C) 2023 The R Foundation for Statistical Computing 750s Platform: x86_64-pc-linux-gnu (64-bit) 750s 750s R is free software and comes with ABSOLUTELY NO WARRANTY. 750s You are welcome to redistribute it under certain conditions. 750s Type 'license()' or 'licence()' for distribution details. 750s 750s R is a collaborative project with many contributors. 750s Type 'contributors()' for more information and 750s 'citation()' on how to cite R or R packages in publications. 750s 750s Type 'demo()' for some demos, 'help()' for on-line help, or 750s 'help.start()' for an HTML browser interface to help. 750s Type 'q()' to quit R. 750s 750s > library('adegraphics') 750s Registered S3 methods overwritten by 'adegraphics': 750s method from 750s biplot.dudi ade4 750s kplot.foucart ade4 750s kplot.mcoa ade4 750s kplot.mfa ade4 750s kplot.pta ade4 750s kplot.sepan ade4 750s kplot.statis ade4 750s scatter.coa ade4 750s scatter.dudi ade4 750s scatter.nipals ade4 750s scatter.pco ade4 750s score.acm ade4 750s score.mix ade4 750s score.pca ade4 750s screeplot.dudi ade4 750s > 750s > 750s Other tests are currently unsupported! 750s They will be progressively added. 751s autopkgtest [05:38:45]: test pkg-r-autopkgtest: -----------------------] 751s pkg-r-autopkgtest PASS 751s autopkgtest [05:38:45]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 751s autopkgtest [05:38:45]: @@@@@@@@@@@@@@@@@@@@ summary 751s run-unit-test PASS 751s pkg-r-autopkgtest PASS 767s Creating nova instance adt-noble-i386-r-cran-adegraphics-20240322-052614-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...