0s autopkgtest [05:22:04]: starting date and time: 2024-03-22 05:22:04+0000 0s autopkgtest [05:22:04]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [05:22:04]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.42hsq8y4/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-tximeta --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-60.secgroup --name adt-noble-i386-r-bioc-tximeta-20240322-052203-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 526s autopkgtest [05:30:50]: testbed dpkg architecture: amd64 526s autopkgtest [05:30:50]: testbed apt version: 2.7.12 527s autopkgtest [05:30:51]: test architecture: i386 527s autopkgtest [05:30:51]: @@@@@@@@@@@@@@@@@@@@ test bed setup 527s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 527s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 527s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 527s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3803 kB] 527s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 527s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [459 kB] 527s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [695 kB] 527s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 527s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 527s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 527s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 527s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1274 kB] 527s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4245 kB] 527s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 527s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 527s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 527s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 530s Fetched 11.3 MB in 1s (7616 kB/s) 531s Reading package lists... 532s Reading package lists... 533s Building dependency tree... 533s Reading state information... 533s Calculating upgrade... 533s The following packages will be upgraded: 533s cloud-init fonts-ubuntu-console python3-markupsafe 533s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 533s Need to get 629 kB of archives. 533s After this operation, 11.3 kB disk space will be freed. 533s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 533s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 533s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 534s Preconfiguring packages ... 534s Fetched 629 kB in 0s (17.5 MB/s) 534s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 534s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 534s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 534s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 534s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 534s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 534s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 535s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 535s Setting up cloud-init (24.1.2-0ubuntu1) ... 536s Setting up python3-markupsafe (2.1.5-1build1) ... 536s Processing triggers for man-db (2.12.0-3) ... 537s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 537s Reading package lists... 538s Building dependency tree... 538s Reading state information... 538s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 538s sh: Attempting to set up Debian/Ubuntu apt sources automatically 538s sh: Distribution appears to be Ubuntu 539s Reading package lists... 540s Building dependency tree... 540s Reading state information... 540s eatmydata is already the newest version (131-1). 540s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 540s Reading package lists... 540s Building dependency tree... 540s Reading state information... 541s dbus is already the newest version (1.14.10-4ubuntu1). 541s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 541s Reading package lists... 541s Building dependency tree... 541s Reading state information... 541s rng-tools-debian is already the newest version (2.4). 541s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 541s Reading package lists... 542s Building dependency tree... 542s Reading state information... 542s The following packages will be REMOVED: 542s cloud-init* python3-configobj* python3-debconf* 542s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 542s After this operation, 3256 kB disk space will be freed. 542s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 542s Removing cloud-init (24.1.2-0ubuntu1) ... 543s Removing python3-configobj (5.0.8-3) ... 543s Removing python3-debconf (1.5.86) ... 543s Processing triggers for man-db (2.12.0-3) ... 543s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 543s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 544s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 544s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 544s invoke-rc.d: policy-rc.d denied execution of try-restart. 544s Reading package lists... 544s Building dependency tree... 544s Reading state information... 545s linux-generic is already the newest version (6.8.0-11.11+1). 545s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 545s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 545s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 545s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 547s Reading package lists... 547s Reading package lists... 547s Building dependency tree... 547s Reading state information... 548s Calculating upgrade... 548s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 548s Reading package lists... 548s Building dependency tree... 548s Reading state information... 548s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 548s autopkgtest [05:31:12]: rebooting testbed after setup commands that affected boot 572s autopkgtest [05:31:36]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 572s autopkgtest [05:31:36]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-tximeta 573s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-tximeta 1.20.3+dfsg-1 (dsc) [2392 B] 573s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-tximeta 1.20.3+dfsg-1 (tar) [612 kB] 573s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-tximeta 1.20.3+dfsg-1 (diff) [3156 B] 574s gpgv: Signature made Mon Feb 5 09:34:00 2024 UTC 574s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 574s gpgv: issuer "tille@debian.org" 574s gpgv: Can't check signature: No public key 574s dpkg-source: warning: cannot verify inline signature for ./r-bioc-tximeta_1.20.3+dfsg-1.dsc: no acceptable signature found 574s autopkgtest [05:31:38]: testing package r-bioc-tximeta version 1.20.3+dfsg-1 574s autopkgtest [05:31:38]: build not needed 576s autopkgtest [05:31:40]: test pkg-r-autopkgtest: preparing testbed 581s Note, using file '/tmp/autopkgtest.qCXpWl/1-autopkgtest-satdep.dsc' to get the build dependencies 581s Reading package lists... 581s Building dependency tree... 581s Reading state information... 582s Starting pkgProblemResolver with broken count: 0 582s Starting 2 pkgProblemResolver with broken count: 0 582s Done 582s The following NEW packages will be installed: 582s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 582s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 582s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 582s g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 582s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 582s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 582s javascript-common libasan8 libatomic1 libblas-dev libblas3 libboost-dev 582s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 582s libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 582s libgfortran-13-dev libgfortran5 libgit2-1.7 libgomp1 libgraphite2-3 582s libharfbuzz0b libhttp-parser2.9 libhwasan0 libice6 libicu-dev libisl23 582s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 582s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-bootswatch libjs-d3 582s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 582s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 582s libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr 582s libjs-popper.js libjs-prettify libjs-sifter.js 582s libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 liblerc4 582s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 582s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 582s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 582s libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 libreadline-dev 582s libsharpyuv0 libsm6 libssh2-1 libstdc++-13-dev libtcl8.6 libthai-data 582s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 582s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev 582s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 582s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 582s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 582s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 582s r-bioc-biocparallel r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 582s r-bioc-delayedarray r-bioc-deseq2 r-bioc-edger r-bioc-ensembldb 582s r-bioc-fishpond r-bioc-genomeinfodb r-bioc-genomeinfodbdata 582s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 582s r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-keggrest r-bioc-limma 582s r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-qvalue r-bioc-rhtslib 582s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 582s r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-summarizedexperiment 582s r-bioc-tximeta r-bioc-tximport r-bioc-tximportdata r-bioc-xvector 582s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 582s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 582s r-cran-brew r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli 582s r-cran-clipr r-cran-codetools r-cran-colorspace r-cran-commonmark 582s r-cran-cpp11 r-cran-crayon r-cran-credentials r-cran-crosstalk r-cran-curl 582s r-cran-dbi r-cran-dbplyr r-cran-desc r-cran-devtools r-cran-diffobj 582s r-cran-digest r-cran-downlit r-cran-dplyr r-cran-dt r-cran-ellipsis 582s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock 582s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 582s r-cran-futile.options r-cran-generics r-cran-gert r-cran-ggplot2 r-cran-gh 582s r-cran-gitcreds r-cran-glue r-cran-gtable r-cran-gtools r-cran-highr 582s r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 582s r-cran-httr2 r-cran-ini r-cran-isoband r-cran-jquerylib r-cran-jsonlite 582s r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 582s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-locfit 582s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 582s r-cran-mgcv r-cran-mime r-cran-miniui r-cran-munsell r-cran-nlme 582s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgdown 582s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr r-cran-png 582s r-cran-praise r-cran-prettyunits r-cran-processx r-cran-profvis 582s r-cran-progress r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-ragg 582s r-cran-rappdirs r-cran-rcmdcheck r-cran-rcolorbrewer r-cran-rcpp 582s r-cran-rcpparmadillo r-cran-rcurl r-cran-rematch2 r-cran-remotes 582s r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 582s r-cran-roxygen2 r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi 582s r-cran-rversions r-cran-sass r-cran-scales r-cran-sessioninfo r-cran-shiny 582s r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr 582s r-cran-svmisc r-cran-sys r-cran-systemfonts r-cran-testthat 582s r-cran-textshaping r-cran-tibble r-cran-tidyr r-cran-tidyselect 582s r-cran-tinytex r-cran-urlchecker r-cran-usethis r-cran-utf8 r-cran-vctrs 582s r-cran-viridislite r-cran-waldo r-cran-whisker r-cran-withr r-cran-xfun 582s r-cran-xml r-cran-xml2 r-cran-xopen r-cran-xtable r-cran-yaml r-cran-zip 582s rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 582s 0 upgraded, 334 newly installed, 0 to remove and 0 not upgraded. 582s Need to get 350 MB of archives. 582s After this operation, 1160 MB of additional disk space will be used. 582s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 582s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 582s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 582s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 582s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 582s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 582s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 582s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 582s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 582s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 582s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 582s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 582s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 582s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 582s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 582s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 582s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 582s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 582s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 582s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 583s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 583s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 583s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 583s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 583s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 583s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 583s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 583s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 583s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 583s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 583s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 583s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 583s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 583s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 583s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 583s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 583s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 583s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 583s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 583s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 583s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 583s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 583s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 583s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 583s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 583s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 583s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 583s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 583s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 583s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 583s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 583s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 583s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 583s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 583s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 583s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 583s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 583s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 583s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 583s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 583s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 583s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 583s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 583s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libhttp-parser2.9 amd64 2.9.4-6 [22.0 kB] 583s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libssh2-1 amd64 1.11.0-4 [138 kB] 583s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libgit2-1.7 amd64 1.7.2+ds-1ubuntu1 [528 kB] 583s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 583s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 583s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 583s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 583s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 583s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 583s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 583s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 583s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 583s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 583s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 583s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 583s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 583s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 583s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 583s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 583s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 583s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 583s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 583s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 583s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 583s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 583s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 583s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 583s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 583s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 583s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 583s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 583s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 583s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 583s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 583s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 583s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 583s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 583s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 583s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 583s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 583s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 583s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 583s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 583s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 583s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 583s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 583s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 583s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 583s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 583s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 583s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 583s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 583s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 583s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 583s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 583s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 583s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 583s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 583s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 583s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 583s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 583s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 583s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 584s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 584s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 584s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 584s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 584s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 584s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 584s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 584s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 584s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 584s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 584s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 584s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 584s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 584s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 584s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 584s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 584s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 584s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 584s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 584s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 584s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 584s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 584s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 584s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 584s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 584s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 584s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 584s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 584s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 584s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 584s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 584s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 584s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 584s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 584s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 584s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 584s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 584s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 584s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 584s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 584s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 584s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 584s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 584s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 584s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 584s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 584s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 584s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 584s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 584s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 584s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 584s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 584s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 584s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 584s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 584s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 584s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 584s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 584s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 584s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 584s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 584s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 584s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 584s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 584s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 585s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 585s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 585s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 585s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 585s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 585s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 585s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 585s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 585s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 585s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 585s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 585s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 585s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 585s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 585s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 585s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 585s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 585s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 585s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 585s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 585s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 585s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 585s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 585s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 585s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 585s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 585s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 585s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 585s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 585s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 585s Get:222 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 585s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 585s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 585s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 585s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 585s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 585s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 585s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dt all 0.31+dfsg-1 [265 kB] 585s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 585s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 585s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 585s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 585s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 585s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 585s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 585s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 585s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 585s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 585s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 585s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 585s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 585s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 585s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 585s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 585s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 585s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 585s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 585s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 585s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 585s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 585s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 585s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 585s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 585s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 585s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-locfit amd64 1.5-9.8-1 [513 kB] 585s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 585s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 585s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 585s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 585s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 585s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 585s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 585s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 585s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 585s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 585s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 585s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 585s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 585s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpparmadillo amd64 0.12.8.0.0-1 [862 kB] 585s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-deseq2 amd64 1.42.0+dfsg-1 [1226 kB] 585s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 585s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-limma amd64 3.58.1+dfsg-1 [1899 kB] 585s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-edger amd64 4.0.16+dfsg-1 [1149 kB] 585s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 585s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 585s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 585s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 585s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 585s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 585s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 585s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 585s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 585s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtools amd64 3.9.5-1 [340 kB] 585s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 585s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 585s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-qvalue all 2.34.0-1 [2803 kB] 585s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-svmisc all 1.2.3-1 [339 kB] 585s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-singlecellexperiment all 1.24.0+ds-1 [828 kB] 585s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-fishpond all 2.8.0+ds-1 [1517 kB] 585s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-tximport all 1.30.0+dfsg-1 [89.5 kB] 585s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-tximeta all 1.20.3+dfsg-1 [502 kB] 585s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-tximportdata all 1.30.0+ds-1 [9352 B] 585s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brew all 1.0-10-1 [77.7 kB] 585s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 585s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 585s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 585s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 585s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-clipr all 0.8.0-1 [53.5 kB] 585s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-credentials all 2.0.1-1 [207 kB] 585s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 585s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rstudioapi all 0.15.0-1 [277 kB] 585s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-zip amd64 2.3.1-1 [123 kB] 585s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gert amd64 2.0.1+dfsg-1 [234 kB] 585s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gitcreds all 0.1.2-1 [93.5 kB] 585s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr2 all 1.0.0-1 [553 kB] 586s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ini all 0.3.1-2build1 [15.8 kB] 586s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gh all 1.4.0-1 [108 kB] 586s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 586s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-whisker all 0.4.1-1 [62.7 kB] 586s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-usethis all 2.2.2-1 [882 kB] 586s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-miniui all 0.1.1.1-3build1 [36.1 kB] 586s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 586s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-downlit all 0.4.3-1 [125 kB] 586s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-systemfonts amd64 1.0.5-1 [229 kB] 586s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-textshaping amd64 0.3.7-2 [95.5 kB] 586s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ragg amd64 1.2.7-1 [395 kB] 586s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootswatch all 3.3.7+dfsg2-1.1 [133 kB] 586s Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgdown all 2.0.7-2 [837 kB] 586s Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 586s Get:321 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-profvis amd64 0.3.8+dfsg-1 [105 kB] 586s Get:322 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sessioninfo all 1.2.2-1 [268 kB] 586s Get:323 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xopen all 1.0.0+dfsg-1 [18.9 kB] 586s Get:324 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcmdcheck all 1.4.0-2 [206 kB] 586s Get:325 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-remotes all 2.4.2.1+dfsg-2 [411 kB] 586s Get:326 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-roxygen2 amd64 7.3.1-1 [712 kB] 586s Get:327 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rversions all 2.1.2-1 [59.4 kB] 586s Get:328 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 586s Get:329 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 586s Get:330 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 586s Get:331 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 586s Get:332 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 586s Get:333 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-urlchecker all 1.0.1-2 [34.0 kB] 586s Get:334 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-devtools all 2.4.5-1 [676 kB] 586s Preconfiguring packages ... 587s Fetched 350 MB in 3s (103 MB/s) 587s Selecting previously unselected package libc-dev-bin. 587s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 587s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 587s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 587s Selecting previously unselected package linux-libc-dev:amd64. 587s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 587s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 587s Selecting previously unselected package libcrypt-dev:amd64. 587s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 587s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 587s Selecting previously unselected package libtirpc-dev:amd64. 587s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 587s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 587s Selecting previously unselected package libnsl-dev:amd64. 587s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 587s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 587s Selecting previously unselected package rpcsvc-proto. 587s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 587s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 587s Selecting previously unselected package libc6-dev:amd64. 587s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 587s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 587s Selecting previously unselected package libisl23:amd64. 587s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 587s Unpacking libisl23:amd64 (0.26-3) ... 587s Selecting previously unselected package libmpc3:amd64. 587s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 587s Unpacking libmpc3:amd64 (1.3.1-1) ... 587s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 587s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 587s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 588s Selecting previously unselected package cpp-13. 588s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 588s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 588s Selecting previously unselected package cpp-x86-64-linux-gnu. 588s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 588s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 588s Selecting previously unselected package cpp. 588s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 588s Unpacking cpp (4:13.2.0-7ubuntu1) ... 588s Selecting previously unselected package libcc1-0:amd64. 588s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 588s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 588s Selecting previously unselected package libgomp1:amd64. 588s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 588s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 588s Selecting previously unselected package libitm1:amd64. 588s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 588s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 588s Selecting previously unselected package libatomic1:amd64. 588s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 588s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 588s Selecting previously unselected package libasan8:amd64. 588s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 588s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 588s Selecting previously unselected package liblsan0:amd64. 588s 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libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 590s Selecting previously unselected package fontconfig. 590s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 590s Unpacking fontconfig (2.15.0-1ubuntu1) ... 590s Selecting previously unselected package fonts-font-awesome. 590s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 590s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 590s Selecting previously unselected package fonts-glyphicons-halflings. 590s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 590s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 590s Selecting previously unselected package fonts-mathjax. 590s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 590s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 590s Selecting previously unselected package libgfortran5:amd64. 590s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_amd64.deb 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to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 590s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 590s Selecting previously unselected package icu-devtools. 590s Preparing to unpack .../049-icu-devtools_74.2-1ubuntu1_amd64.deb ... 590s Unpacking icu-devtools (74.2-1ubuntu1) ... 590s Selecting previously unselected package javascript-common. 590s Preparing to unpack .../050-javascript-common_11+nmu1_all.deb ... 590s Unpacking javascript-common (11+nmu1) ... 591s Selecting previously unselected package libblas3:amd64. 591s Preparing to unpack .../051-libblas3_3.12.0-3_amd64.deb ... 591s Unpacking libblas3:amd64 (3.12.0-3) ... 591s Selecting previously unselected package libblas-dev:amd64. 591s Preparing to unpack .../052-libblas-dev_3.12.0-3_amd64.deb ... 591s Unpacking libblas-dev:amd64 (3.12.0-3) ... 591s Selecting previously unselected package libboost1.83-dev:amd64. 591s Preparing to unpack .../053-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 591s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 593s Selecting previously unselected package libboost-dev:amd64. 593s Preparing to unpack .../054-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 593s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ... 593s Selecting previously unselected package libbz2-dev:amd64. 593s Preparing to unpack .../055-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 593s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 593s Selecting previously unselected package libpixman-1-0:amd64. 593s Preparing to unpack .../056-libpixman-1-0_0.42.2-1_amd64.deb ... 593s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 593s Selecting previously unselected package libxcb-render0:amd64. 593s Preparing to unpack .../057-libxcb-render0_1.15-1_amd64.deb ... 593s Unpacking libxcb-render0:amd64 (1.15-1) ... 593s Selecting previously unselected package libxcb-shm0:amd64. 593s Preparing to unpack .../058-libxcb-shm0_1.15-1_amd64.deb ... 593s Unpacking libxcb-shm0:amd64 (1.15-1) ... 593s Selecting previously unselected package libxrender1:amd64. 593s Preparing to unpack .../059-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 593s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 593s Selecting previously unselected package libcairo2:amd64. 593s Preparing to unpack .../060-libcairo2_1.18.0-1_amd64.deb ... 593s Unpacking libcairo2:amd64 (1.18.0-1) ... 593s Selecting previously unselected package libdatrie1:amd64. 593s Preparing to unpack .../061-libdatrie1_0.2.13-3_amd64.deb ... 593s Unpacking libdatrie1:amd64 (0.2.13-3) ... 593s Selecting previously unselected package libdeflate0:amd64. 593s Preparing to unpack .../062-libdeflate0_1.19-1_amd64.deb ... 593s Unpacking libdeflate0:amd64 (1.19-1) ... 593s Selecting previously unselected package libhttp-parser2.9:amd64. 593s Preparing to unpack .../063-libhttp-parser2.9_2.9.4-6_amd64.deb ... 593s Unpacking libhttp-parser2.9:amd64 (2.9.4-6) ... 593s Selecting previously unselected package libssh2-1:amd64. 593s Preparing to unpack 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package libjs-prettify. 595s Preparing to unpack .../090-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 595s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 595s Selecting previously unselected package liblapack3:amd64. 595s Preparing to unpack .../091-liblapack3_3.12.0-3_amd64.deb ... 595s Unpacking liblapack3:amd64 (3.12.0-3) ... 595s Selecting previously unselected package liblapack-dev:amd64. 595s Preparing to unpack .../092-liblapack-dev_3.12.0-3_amd64.deb ... 595s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 595s Selecting previously unselected package liblerc4:amd64. 595s Preparing to unpack .../093-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 595s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 595s Selecting previously unselected package liblua5.4-0:amd64. 595s Preparing to unpack .../094-liblua5.4-0_5.4.6-3_amd64.deb ... 595s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 595s Selecting previously unselected package libncurses-dev:amd64. 595s Preparing to unpack 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596s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 596s Selecting previously unselected package libpcre2-dev:amd64. 596s Preparing to unpack .../106-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 596s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 596s Selecting previously unselected package libpkgconf3:amd64. 596s Preparing to unpack .../107-libpkgconf3_1.8.1-2_amd64.deb ... 596s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 596s Selecting previously unselected package zlib1g-dev:amd64. 596s Preparing to unpack .../108-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 596s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 596s Selecting previously unselected package libpng-dev:amd64. 596s Preparing to unpack .../109-libpng-dev_1.6.43-1_amd64.deb ... 596s Unpacking libpng-dev:amd64 (1.6.43-1) ... 596s Selecting previously unselected package libreadline-dev:amd64. 596s Preparing to unpack .../110-libreadline-dev_8.2-3_amd64.deb ... 596s Unpacking libreadline-dev:amd64 (8.2-3) ... 596s Selecting previously unselected package libsharpyuv0:amd64. 596s Preparing to unpack .../111-libsharpyuv0_1.3.2-0.4_amd64.deb ... 596s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 596s Selecting previously unselected package libsm6:amd64. 596s Preparing to unpack .../112-libsm6_2%3a1.2.3-1build2_amd64.deb ... 596s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 596s Selecting previously unselected package libtcl8.6:amd64. 596s Preparing to unpack .../113-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 596s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 596s Selecting previously unselected package libjbig0:amd64. 596s Preparing to unpack .../114-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 596s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 596s Selecting previously unselected package libwebp7:amd64. 596s Preparing to unpack .../115-libwebp7_1.3.2-0.4_amd64.deb ... 596s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 596s Selecting previously unselected package libtiff6:amd64. 596s Preparing to unpack .../116-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 596s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 596s Selecting previously unselected package libxft2:amd64. 596s Preparing to unpack .../117-libxft2_2.3.6-1_amd64.deb ... 596s Unpacking libxft2:amd64 (2.3.6-1) ... 596s Selecting previously unselected package libxss1:amd64. 596s Preparing to unpack .../118-libxss1_1%3a1.2.3-1build2_amd64.deb ... 596s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 596s Selecting previously unselected package libtk8.6:amd64. 596s Preparing to unpack .../119-libtk8.6_8.6.13-2_amd64.deb ... 596s Unpacking libtk8.6:amd64 (8.6.13-2) ... 596s Selecting previously unselected package libxt6:amd64. 596s Preparing to unpack .../120-libxt6_1%3a1.2.1-1.1_amd64.deb ... 596s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 596s Selecting previously unselected package node-bootstrap-sass. 596s Preparing to unpack .../121-node-bootstrap-sass_3.4.3-2_all.deb ... 596s Unpacking node-bootstrap-sass (3.4.3-2) ... 596s Selecting previously unselected package node-html5shiv. 596s Preparing to unpack .../122-node-html5shiv_3.7.3+dfsg-5_all.deb ... 596s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 596s Selecting previously unselected package node-normalize.css. 596s Preparing to unpack .../123-node-normalize.css_8.0.1-5_all.deb ... 596s Unpacking node-normalize.css (8.0.1-5) ... 596s Selecting previously unselected package pandoc-data. 596s Preparing to unpack .../124-pandoc-data_3.1.3-1_all.deb ... 596s Unpacking pandoc-data (3.1.3-1) ... 596s Selecting previously unselected package pandoc. 596s Preparing to unpack .../125-pandoc_3.1.3+ds-2_amd64.deb ... 596s Unpacking pandoc (3.1.3+ds-2) ... 597s Selecting previously unselected package pkgconf-bin. 597s Preparing to unpack .../126-pkgconf-bin_1.8.1-2_amd64.deb ... 597s Unpacking pkgconf-bin (1.8.1-2) ... 597s Selecting previously unselected package pkgconf:amd64. 597s Preparing to unpack .../127-pkgconf_1.8.1-2_amd64.deb ... 597s Unpacking pkgconf:amd64 (1.8.1-2) ... 597s Selecting previously unselected package pkg-config:amd64. 597s Preparing to unpack .../128-pkg-config_1.8.1-2_amd64.deb ... 597s Unpacking pkg-config:amd64 (1.8.1-2) ... 597s Selecting previously unselected package zip. 597s Preparing to unpack .../129-zip_3.0-13_amd64.deb ... 597s Unpacking zip (3.0-13) ... 597s Selecting previously unselected package unzip. 597s Preparing to unpack .../130-unzip_6.0-28ubuntu3_amd64.deb ... 597s Unpacking unzip (6.0-28ubuntu3) ... 597s Selecting previously unselected package xdg-utils. 597s Preparing to unpack .../131-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 597s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 597s Selecting previously unselected package r-base-core. 597s Preparing to unpack .../132-r-base-core_4.3.2-1build1_amd64.deb ... 597s Unpacking r-base-core (4.3.2-1build1) ... 598s Selecting previously unselected package liblzma-dev:amd64. 598s Preparing to unpack .../133-liblzma-dev_5.4.5-0.3_amd64.deb ... 598s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 598s Selecting previously unselected package r-base-dev. 598s Preparing to unpack .../134-r-base-dev_4.3.2-1build1_all.deb ... 598s Unpacking r-base-dev (4.3.2-1build1) ... 598s Selecting previously unselected package pkg-r-autopkgtest. 598s Preparing to unpack .../135-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 598s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 598s Selecting previously unselected package r-bioc-biocgenerics. 598s Preparing to unpack .../136-r-bioc-biocgenerics_0.48.1-2_all.deb ... 598s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 598s Selecting previously unselected package r-bioc-biobase. 598s Preparing to unpack .../137-r-bioc-biobase_2.62.0-1_amd64.deb ... 598s Unpacking r-bioc-biobase (2.62.0-1) ... 598s Selecting previously unselected package r-bioc-s4vectors. 598s Preparing to unpack .../138-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 598s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 598s Selecting previously unselected package r-bioc-iranges. 598s Preparing to unpack .../139-r-bioc-iranges_2.36.0-1_amd64.deb ... 598s Unpacking r-bioc-iranges (2.36.0-1) ... 598s Selecting previously unselected package r-cran-dbi. 598s Preparing to unpack .../140-r-cran-dbi_1.2.2-1_all.deb ... 598s Unpacking r-cran-dbi (1.2.2-1) ... 598s Selecting previously unselected package r-cran-bit. 598s Preparing to unpack .../141-r-cran-bit_4.0.5-1_amd64.deb ... 598s Unpacking r-cran-bit (4.0.5-1) ... 598s Selecting previously unselected package r-cran-bit64. 598s Preparing to unpack .../142-r-cran-bit64_4.0.5-1_amd64.deb ... 598s Unpacking r-cran-bit64 (4.0.5-1) ... 598s Selecting previously unselected package r-cran-rlang. 598s Preparing to unpack .../143-r-cran-rlang_1.1.3-1_amd64.deb ... 598s Unpacking r-cran-rlang (1.1.3-1) ... 598s Selecting previously unselected package r-cran-cli. 598s Preparing to unpack .../144-r-cran-cli_3.6.2-1_amd64.deb ... 598s Unpacking r-cran-cli (3.6.2-1) ... 598s Selecting previously unselected package r-cran-glue. 598s Preparing to unpack .../145-r-cran-glue_1.7.0-1_amd64.deb ... 598s Unpacking r-cran-glue (1.7.0-1) ... 598s Selecting previously unselected package r-cran-lifecycle. 598s Preparing to unpack .../146-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 598s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 598s Selecting previously unselected package r-cran-vctrs. 598s Preparing to unpack .../147-r-cran-vctrs_0.6.5-1_amd64.deb ... 598s Unpacking r-cran-vctrs (0.6.5-1) ... 599s Selecting previously unselected package r-cran-blob. 599s Preparing to unpack .../148-r-cran-blob_1.2.4-1_all.deb ... 599s Unpacking r-cran-blob (1.2.4-1) ... 599s Selecting previously unselected package r-cran-fastmap. 599s Preparing to unpack .../149-r-cran-fastmap_1.1.1-1_amd64.deb ... 599s Unpacking r-cran-fastmap (1.1.1-1) ... 599s Selecting previously unselected package r-cran-cachem. 599s Preparing to unpack .../150-r-cran-cachem_1.0.8-1_amd64.deb ... 599s Unpacking r-cran-cachem (1.0.8-1) ... 599s Selecting previously unselected package r-cran-memoise. 599s Preparing to unpack .../151-r-cran-memoise_2.0.1-1_all.deb ... 599s Unpacking r-cran-memoise (2.0.1-1) ... 599s Selecting previously unselected package r-cran-pkgconfig. 599s Preparing to unpack .../152-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 599s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 599s Selecting previously unselected package r-cran-plogr. 599s Preparing to unpack .../153-r-cran-plogr_0.2.0-3build1_all.deb ... 599s Unpacking r-cran-plogr (0.2.0-3build1) ... 599s Selecting previously unselected package r-cran-cpp11. 599s Preparing to unpack .../154-r-cran-cpp11_0.4.7-1_all.deb ... 599s Unpacking r-cran-cpp11 (0.4.7-1) ... 599s Selecting previously unselected package r-cran-rsqlite. 599s Preparing to unpack .../155-r-cran-rsqlite_2.3.4-1_amd64.deb ... 599s Unpacking r-cran-rsqlite (2.3.4-1) ... 599s Selecting previously unselected package r-cran-curl. 599s Preparing to unpack .../156-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 599s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 599s Selecting previously unselected package r-cran-jsonlite. 599s Preparing to unpack .../157-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 599s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 599s Selecting previously unselected package r-cran-mime. 599s Preparing to unpack .../158-r-cran-mime_0.12-1_amd64.deb ... 599s Unpacking r-cran-mime (0.12-1) ... 599s Selecting previously unselected package r-cran-sys. 599s Preparing to unpack .../159-r-cran-sys_3.4.2-1_amd64.deb ... 599s Unpacking r-cran-sys (3.4.2-1) ... 599s Selecting previously unselected package r-cran-askpass. 599s Preparing to unpack .../160-r-cran-askpass_1.2.0-1_amd64.deb ... 599s Unpacking r-cran-askpass (1.2.0-1) ... 599s Selecting previously unselected package r-cran-openssl. 599s Preparing to unpack .../161-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 599s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 599s Selecting previously unselected package r-cran-r6. 599s Preparing to unpack .../162-r-cran-r6_2.5.1-1_all.deb ... 599s Unpacking r-cran-r6 (2.5.1-1) ... 599s Selecting previously unselected package r-cran-httr. 599s Preparing to unpack .../163-r-cran-httr_1.4.7+dfsg-1_all.deb ... 599s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 599s Selecting previously unselected package r-cran-png. 599s Preparing to unpack .../164-r-cran-png_0.1-8-1_amd64.deb ... 599s Unpacking r-cran-png (0.1-8-1) ... 599s Selecting previously unselected package r-bioc-zlibbioc. 599s Preparing to unpack .../165-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 599s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 599s Selecting previously unselected package r-bioc-xvector. 599s Preparing to unpack .../166-r-bioc-xvector_0.42.0-1_amd64.deb ... 599s Unpacking r-bioc-xvector (0.42.0-1) ... 599s Selecting previously unselected package r-cran-bitops. 599s Preparing to unpack .../167-r-cran-bitops_1.0-7-1_amd64.deb ... 599s Unpacking r-cran-bitops (1.0-7-1) ... 599s Selecting previously unselected package r-cran-rcurl. 599s Preparing to unpack .../168-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 599s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 599s Selecting previously unselected package r-bioc-genomeinfodbdata. 599s Preparing to unpack .../169-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 599s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 599s Selecting previously unselected package r-bioc-genomeinfodb. 600s Preparing to unpack .../170-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 600s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 600s Selecting previously unselected package r-cran-crayon. 600s Preparing to unpack .../171-r-cran-crayon_1.5.2-1_all.deb ... 600s Unpacking r-cran-crayon (1.5.2-1) ... 600s Selecting previously unselected package r-bioc-biostrings. 600s Preparing to unpack .../172-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 600s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 600s Selecting previously unselected package r-bioc-keggrest. 600s Preparing to unpack .../173-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 600s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 600s Selecting previously unselected package r-bioc-annotationdbi. 600s Preparing to unpack .../174-r-bioc-annotationdbi_1.64.1-1_all.deb ... 600s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 600s Selecting previously unselected package r-bioc-genomicranges. 600s Preparing to unpack .../175-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 600s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 600s Selecting previously unselected package r-cran-lazyeval. 600s Preparing to unpack .../176-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 600s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 600s Selecting previously unselected package r-bioc-annotationfilter. 600s Preparing to unpack .../177-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 600s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 600s Selecting previously unselected package r-cran-generics. 600s Preparing to unpack .../178-r-cran-generics_0.1.3-1_all.deb ... 600s Unpacking r-cran-generics (0.1.3-1) ... 600s Selecting previously unselected package r-cran-magrittr. 600s Preparing to unpack .../179-r-cran-magrittr_2.0.3-1_amd64.deb ... 600s Unpacking r-cran-magrittr (2.0.3-1) ... 600s Selecting previously unselected package r-cran-fansi. 600s Preparing to unpack .../180-r-cran-fansi_1.0.5-1_amd64.deb ... 600s Unpacking r-cran-fansi (1.0.5-1) ... 600s Selecting previously unselected package r-cran-utf8. 600s Preparing to unpack .../181-r-cran-utf8_1.2.4-1_amd64.deb ... 600s Unpacking r-cran-utf8 (1.2.4-1) ... 600s Selecting previously unselected package r-cran-pillar. 600s Preparing to unpack .../182-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 600s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 600s Selecting previously unselected package r-cran-tibble. 600s Preparing to unpack .../183-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 600s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 600s Selecting previously unselected package r-cran-withr. 600s Preparing to unpack .../184-r-cran-withr_2.5.0-1_all.deb ... 600s Unpacking r-cran-withr (2.5.0-1) ... 600s Selecting previously unselected package r-cran-tidyselect. 600s Preparing to unpack .../185-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 600s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 600s Selecting previously unselected package r-cran-dplyr. 600s Preparing to unpack .../186-r-cran-dplyr_1.1.4-1_amd64.deb ... 600s Unpacking r-cran-dplyr (1.1.4-1) ... 600s Selecting previously unselected package r-cran-purrr. 600s Preparing to unpack .../187-r-cran-purrr_1.0.2-1_amd64.deb ... 600s Unpacking r-cran-purrr (1.0.2-1) ... 600s Selecting previously unselected package r-cran-stringi. 600s Preparing to unpack .../188-r-cran-stringi_1.8.3-1_amd64.deb ... 600s Unpacking r-cran-stringi (1.8.3-1) ... 600s Selecting previously unselected package r-cran-stringr. 600s Preparing to unpack .../189-r-cran-stringr_1.5.1-1_all.deb ... 600s Unpacking r-cran-stringr (1.5.1-1) ... 601s Selecting previously unselected package r-cran-tidyr. 601s Preparing to unpack .../190-r-cran-tidyr_1.3.1-1_amd64.deb ... 601s Unpacking r-cran-tidyr (1.3.1-1) ... 601s Selecting previously unselected package r-cran-dbplyr. 601s Preparing to unpack .../191-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 601s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 601s Selecting previously unselected package r-cran-filelock. 601s Preparing to unpack .../192-r-cran-filelock_1.0.3-1_amd64.deb ... 601s Unpacking r-cran-filelock (1.0.3-1) ... 601s Selecting previously unselected package r-bioc-biocfilecache. 601s Preparing to unpack .../193-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 601s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 601s Selecting previously unselected package r-cran-biocmanager. 601s Preparing to unpack .../194-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 601s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 601s Selecting previously unselected package r-bioc-biocversion. 601s Preparing to unpack .../195-r-bioc-biocversion_3.18.1-1_all.deb ... 601s Unpacking r-bioc-biocversion (3.18.1-1) ... 601s Selecting previously unselected package r-cran-rappdirs. 601s Preparing to unpack .../196-r-cran-rappdirs_0.3.3-1_amd64.deb ... 601s Unpacking r-cran-rappdirs (0.3.3-1) ... 601s Selecting previously unselected package r-cran-yaml. 601s Preparing to unpack .../197-r-cran-yaml_2.3.8-1_amd64.deb ... 601s Unpacking r-cran-yaml (2.3.8-1) ... 601s Selecting previously unselected package r-cran-littler. 601s Preparing to unpack .../198-r-cran-littler_0.3.19-1_amd64.deb ... 601s Unpacking r-cran-littler (0.3.19-1) ... 601s Selecting previously unselected package r-cran-pkgkitten. 601s Preparing to unpack .../199-r-cran-pkgkitten_0.2.3-1_all.deb ... 601s Unpacking r-cran-pkgkitten (0.2.3-1) ... 601s Selecting previously unselected package r-cran-rcpp. 601s Preparing to unpack .../200-r-cran-rcpp_1.0.12-1_amd64.deb ... 601s Unpacking r-cran-rcpp (1.0.12-1) ... 601s Selecting previously unselected package r-cran-later. 601s Preparing to unpack .../201-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 601s Unpacking r-cran-later (1.3.2+dfsg-1) ... 601s Selecting previously unselected package r-cran-promises. 601s Preparing to unpack .../202-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 601s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 601s Selecting previously unselected package r-cran-httpuv. 601s Preparing to unpack .../203-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 601s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 601s Selecting previously unselected package r-cran-xtable. 601s Preparing to unpack .../204-r-cran-xtable_1%3a1.8-4-2_all.deb ... 601s Unpacking r-cran-xtable (1:1.8-4-2) ... 601s Selecting previously unselected package r-cran-base64enc. 601s Preparing to unpack .../205-r-cran-base64enc_0.1-3-3_amd64.deb ... 601s Unpacking r-cran-base64enc (0.1-3-3) ... 601s Selecting previously unselected package r-cran-digest. 601s Preparing to unpack .../206-r-cran-digest_0.6.34-1_amd64.deb ... 601s Unpacking r-cran-digest (0.6.34-1) ... 601s Selecting previously unselected package r-cran-ellipsis. 601s Preparing to unpack .../207-r-cran-ellipsis_0.3.2-2_amd64.deb ... 601s Unpacking r-cran-ellipsis (0.3.2-2) ... 601s Selecting previously unselected package r-cran-htmltools. 601s Preparing to unpack .../208-r-cran-htmltools_0.5.7-1_amd64.deb ... 601s Unpacking r-cran-htmltools (0.5.7-1) ... 601s Selecting previously unselected package r-cran-fontawesome. 601s Preparing to unpack .../209-r-cran-fontawesome_0.5.2-1_all.deb ... 601s Unpacking r-cran-fontawesome (0.5.2-1) ... 601s Selecting previously unselected package r-cran-sourcetools. 601s Preparing to unpack .../210-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 601s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 601s Selecting previously unselected package r-cran-commonmark. 602s Preparing to unpack .../211-r-cran-commonmark_1.9.1-1_amd64.deb ... 602s Unpacking r-cran-commonmark (1.9.1-1) ... 602s Selecting previously unselected package r-cran-jquerylib. 602s Preparing to unpack .../212-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 602s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 602s Selecting previously unselected package r-cran-fs. 602s Preparing to unpack .../213-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 602s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 602s Selecting previously unselected package r-cran-sass. 602s Preparing to unpack .../214-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 602s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 602s Selecting previously unselected package r-cran-bslib. 602s Preparing to unpack .../215-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 602s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 602s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 602s Preparing to unpack .../216-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 602s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 602s Selecting previously unselected package r-cran-shiny. 602s Preparing to unpack .../217-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 602s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 602s Selecting previously unselected package r-cran-evaluate. 602s Preparing to unpack .../218-r-cran-evaluate_0.23-1_all.deb ... 602s Unpacking r-cran-evaluate (0.23-1) ... 602s Selecting previously unselected package r-cran-xfun. 602s Preparing to unpack .../219-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 602s Unpacking r-cran-xfun (0.41+dfsg-1) ... 602s Selecting previously unselected package r-cran-highr. 602s Preparing to unpack .../220-r-cran-highr_0.10+dfsg-1_all.deb ... 602s Unpacking r-cran-highr (0.10+dfsg-1) ... 602s Selecting previously unselected package libjs-mathjax. 602s Preparing to unpack .../221-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 602s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 603s Selecting previously unselected package r-cran-knitr. 603s Preparing to unpack .../222-r-cran-knitr_1.45+dfsg-1_all.deb ... 603s Unpacking r-cran-knitr (1.45+dfsg-1) ... 603s Selecting previously unselected package r-cran-tinytex. 603s Preparing to unpack .../223-r-cran-tinytex_0.49-1_all.deb ... 603s Unpacking r-cran-tinytex (0.49-1) ... 603s Selecting previously unselected package libjs-modernizr. 603s Preparing to unpack .../224-libjs-modernizr_2.6.2+ds1-5_all.deb ... 603s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 603s Selecting previously unselected package r-cran-rmarkdown. 603s Preparing to unpack .../225-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 603s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 603s Selecting previously unselected package r-cran-htmlwidgets. 603s Preparing to unpack .../226-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 603s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 603s Selecting previously unselected package r-cran-crosstalk. 603s Preparing to unpack .../227-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 603s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 603s Selecting previously unselected package r-cran-dt. 603s Preparing to unpack .../228-r-cran-dt_0.31+dfsg-1_all.deb ... 603s Unpacking r-cran-dt (0.31+dfsg-1) ... 603s Selecting previously unselected package r-bioc-interactivedisplaybase. 603s Preparing to unpack .../229-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 603s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 603s Selecting previously unselected package r-bioc-annotationhub. 603s Preparing to unpack .../230-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 603s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 603s Selecting previously unselected package r-bioc-biocio. 603s Preparing to unpack .../231-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 603s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 603s Selecting previously unselected package r-cran-formatr. 604s Preparing to unpack .../232-r-cran-formatr_1.14-1_all.deb ... 604s Unpacking r-cran-formatr (1.14-1) ... 604s Selecting previously unselected package r-cran-lambda.r. 604s Preparing to unpack .../233-r-cran-lambda.r_1.2.4-2build1_all.deb ... 604s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 604s Selecting previously unselected package r-cran-futile.options. 604s Preparing to unpack .../234-r-cran-futile.options_1.0.1-3build1_all.deb ... 604s Unpacking r-cran-futile.options (1.0.1-3build1) ... 604s Selecting previously unselected package r-cran-futile.logger. 604s Preparing to unpack .../235-r-cran-futile.logger_1.4.3-4build1_all.deb ... 604s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 604s Selecting previously unselected package r-cran-snow. 604s Preparing to unpack .../236-r-cran-snow_1%3a0.4.4-2_all.deb ... 604s Unpacking r-cran-snow (1:0.4.4-2) ... 604s Selecting previously unselected package r-cran-codetools. 604s Preparing to unpack .../237-r-cran-codetools_0.2-19-1_all.deb ... 604s Unpacking r-cran-codetools (0.2-19-1) ... 604s Selecting previously unselected package r-cran-bh. 604s Preparing to unpack .../238-r-cran-bh_1.84.0-1_all.deb ... 604s Unpacking r-cran-bh (1.84.0-1) ... 604s Selecting previously unselected package r-bioc-biocparallel. 604s Preparing to unpack .../239-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 604s Unpacking r-bioc-biocparallel (1.36.0-1) ... 604s Selecting previously unselected package r-cran-xml. 604s Preparing to unpack .../240-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 604s Unpacking r-cran-xml (3.99-0.16.1-1) ... 604s Selecting previously unselected package r-cran-hms. 604s Preparing to unpack .../241-r-cran-hms_1.1.3-1_all.deb ... 604s Unpacking r-cran-hms (1.1.3-1) ... 604s Selecting previously unselected package r-cran-prettyunits. 604s Preparing to unpack .../242-r-cran-prettyunits_1.2.0-1_all.deb ... 604s Unpacking r-cran-prettyunits (1.2.0-1) ... 604s Selecting previously unselected package r-cran-progress. 604s Preparing to unpack .../243-r-cran-progress_1.2.3-1_all.deb ... 604s Unpacking r-cran-progress (1.2.3-1) ... 604s Selecting previously unselected package r-cran-xml2. 604s Preparing to unpack .../244-r-cran-xml2_1.3.6-1_amd64.deb ... 604s Unpacking r-cran-xml2 (1.3.6-1) ... 604s Selecting previously unselected package r-bioc-biomart. 604s Preparing to unpack .../245-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 604s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 604s Selecting previously unselected package r-cran-lattice. 604s Preparing to unpack .../246-r-cran-lattice_0.22-5-1_amd64.deb ... 604s Unpacking r-cran-lattice (0.22-5-1) ... 604s Selecting previously unselected package r-cran-matrix. 604s Preparing to unpack .../247-r-cran-matrix_1.6-5-1_amd64.deb ... 604s Unpacking r-cran-matrix (1.6-5-1) ... 604s Selecting previously unselected package r-cran-matrixstats. 604s Preparing to unpack .../248-r-cran-matrixstats_1.2.0-1_amd64.deb ... 604s Unpacking r-cran-matrixstats (1.2.0-1) ... 604s Selecting previously unselected package r-bioc-matrixgenerics. 604s Preparing to unpack .../249-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 604s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 604s Selecting previously unselected package r-cran-abind. 604s Preparing to unpack .../250-r-cran-abind_1.4-5-2_all.deb ... 604s Unpacking r-cran-abind (1.4-5-2) ... 604s Selecting previously unselected package r-bioc-s4arrays. 604s Preparing to unpack .../251-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 604s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 604s Selecting previously unselected package r-bioc-sparsearray. 604s Preparing to unpack .../252-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 604s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 604s Selecting previously unselected package r-bioc-delayedarray. 604s Preparing to unpack .../253-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 604s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 605s Selecting previously unselected package r-bioc-summarizedexperiment. 605s Preparing to unpack .../254-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 605s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 605s Selecting previously unselected package r-cran-locfit. 605s Preparing to unpack .../255-r-cran-locfit_1.5-9.8-1_amd64.deb ... 605s Unpacking r-cran-locfit (1.5-9.8-1) ... 605s Selecting previously unselected package r-cran-gtable. 605s Preparing to unpack .../256-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 605s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 605s Selecting previously unselected package r-cran-isoband. 605s Preparing to unpack .../257-r-cran-isoband_0.2.7-1_amd64.deb ... 605s Unpacking r-cran-isoband (0.2.7-1) ... 605s Selecting previously unselected package r-cran-mass. 605s Preparing to unpack .../258-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 605s Unpacking r-cran-mass (7.3-60.0.1-1) ... 605s Selecting previously unselected package r-cran-nlme. 605s Preparing to unpack .../259-r-cran-nlme_3.1.164-1_amd64.deb ... 605s Unpacking r-cran-nlme (3.1.164-1) ... 605s Selecting previously unselected package r-cran-mgcv. 605s Preparing to unpack .../260-r-cran-mgcv_1.9-1-1_amd64.deb ... 605s Unpacking r-cran-mgcv (1.9-1-1) ... 605s Selecting previously unselected package r-cran-farver. 605s Preparing to unpack .../261-r-cran-farver_2.1.1-1_amd64.deb ... 605s Unpacking r-cran-farver (2.1.1-1) ... 605s Selecting previously unselected package r-cran-labeling. 605s Preparing to unpack .../262-r-cran-labeling_0.4.3-1_all.deb ... 605s Unpacking r-cran-labeling (0.4.3-1) ... 605s Selecting previously unselected package r-cran-colorspace. 605s Preparing to unpack .../263-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 605s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 605s Selecting previously unselected package r-cran-munsell. 605s Preparing to unpack .../264-r-cran-munsell_0.5.0-2build1_all.deb ... 605s Unpacking r-cran-munsell (0.5.0-2build1) ... 605s Selecting previously unselected package r-cran-rcolorbrewer. 605s Preparing to unpack .../265-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 605s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 605s Selecting previously unselected package r-cran-viridislite. 605s Preparing to unpack .../266-r-cran-viridislite_0.4.2-2_all.deb ... 605s Unpacking r-cran-viridislite (0.4.2-2) ... 605s Selecting previously unselected package r-cran-scales. 605s Preparing to unpack .../267-r-cran-scales_1.3.0-1_all.deb ... 605s Unpacking r-cran-scales (1.3.0-1) ... 605s Selecting previously unselected package r-cran-ggplot2. 605s Preparing to unpack .../268-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 605s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 605s Selecting previously unselected package r-cran-rcpparmadillo. 605s Preparing to unpack .../269-r-cran-rcpparmadillo_0.12.8.0.0-1_amd64.deb ... 605s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 605s Selecting previously unselected package r-bioc-deseq2. 605s Preparing to unpack .../270-r-bioc-deseq2_1.42.0+dfsg-1_amd64.deb ... 605s Unpacking r-bioc-deseq2 (1.42.0+dfsg-1) ... 605s Selecting previously unselected package r-cran-statmod. 605s Preparing to unpack .../271-r-cran-statmod_1.5.0-1_amd64.deb ... 605s Unpacking r-cran-statmod (1.5.0-1) ... 606s Selecting previously unselected package r-bioc-limma. 606s Preparing to unpack .../272-r-bioc-limma_3.58.1+dfsg-1_amd64.deb ... 606s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 606s Selecting previously unselected package r-bioc-edger. 606s Preparing to unpack .../273-r-bioc-edger_4.0.16+dfsg-1_amd64.deb ... 606s Unpacking r-bioc-edger (4.0.16+dfsg-1) ... 606s Selecting previously unselected package r-bioc-rhtslib. 606s Preparing to unpack .../274-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 606s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 606s Selecting previously unselected package r-bioc-rsamtools. 606s Preparing to unpack .../275-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 606s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 606s Selecting previously unselected package r-bioc-genomicalignments. 606s Preparing to unpack .../276-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 606s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 606s Selecting previously unselected package r-cran-rjson. 606s Preparing to unpack .../277-r-cran-rjson_0.2.21-1_amd64.deb ... 606s Unpacking r-cran-rjson (0.2.21-1) ... 606s Selecting previously unselected package r-cran-restfulr. 606s Preparing to unpack .../278-r-cran-restfulr_0.0.15-1_amd64.deb ... 606s Unpacking r-cran-restfulr (0.0.15-1) ... 606s Selecting previously unselected package r-bioc-rtracklayer. 606s Preparing to unpack .../279-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 606s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 606s Selecting previously unselected package r-bioc-genomicfeatures. 606s Preparing to unpack .../280-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 606s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 606s Selecting previously unselected package r-bioc-protgenerics. 606s Preparing to unpack .../281-r-bioc-protgenerics_1.34.0-1_all.deb ... 606s Unpacking r-bioc-protgenerics (1.34.0-1) ... 606s Selecting previously unselected package r-bioc-ensembldb. 606s Preparing to unpack .../282-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 606s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 606s Selecting previously unselected package r-cran-gtools. 606s Preparing to unpack .../283-r-cran-gtools_3.9.5-1_amd64.deb ... 606s Unpacking r-cran-gtools (3.9.5-1) ... 606s Selecting previously unselected package r-cran-plyr. 606s Preparing to unpack .../284-r-cran-plyr_1.8.9-1_amd64.deb ... 606s Unpacking r-cran-plyr (1.8.9-1) ... 606s Selecting previously unselected package r-cran-reshape2. 606s Preparing to unpack .../285-r-cran-reshape2_1.4.4-2build1_amd64.deb ... 606s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 606s Selecting previously unselected package r-bioc-qvalue. 606s Preparing to unpack .../286-r-bioc-qvalue_2.34.0-1_all.deb ... 606s Unpacking r-bioc-qvalue (2.34.0-1) ... 606s Selecting previously unselected package r-cran-svmisc. 606s Preparing to unpack .../287-r-cran-svmisc_1.2.3-1_all.deb ... 606s Unpacking r-cran-svmisc (1.2.3-1) ... 606s Selecting previously unselected package r-bioc-singlecellexperiment. 606s Preparing to unpack .../288-r-bioc-singlecellexperiment_1.24.0+ds-1_all.deb ... 606s Unpacking r-bioc-singlecellexperiment (1.24.0+ds-1) ... 606s Selecting previously unselected package r-bioc-fishpond. 606s Preparing to unpack .../289-r-bioc-fishpond_2.8.0+ds-1_all.deb ... 606s Unpacking r-bioc-fishpond (2.8.0+ds-1) ... 606s Selecting previously unselected package r-bioc-tximport. 606s Preparing to unpack .../290-r-bioc-tximport_1.30.0+dfsg-1_all.deb ... 606s Unpacking r-bioc-tximport (1.30.0+dfsg-1) ... 607s Selecting previously unselected package r-bioc-tximeta. 607s Preparing to unpack .../291-r-bioc-tximeta_1.20.3+dfsg-1_all.deb ... 607s Unpacking r-bioc-tximeta (1.20.3+dfsg-1) ... 607s Selecting previously unselected package r-bioc-tximportdata. 607s Preparing to unpack .../292-r-bioc-tximportdata_1.30.0+ds-1_all.deb ... 607s Unpacking r-bioc-tximportdata (1.30.0+ds-1) ... 607s Selecting previously unselected package r-cran-brew. 607s Preparing to unpack .../293-r-cran-brew_1.0-10-1_all.deb ... 607s Unpacking r-cran-brew (1.0-10-1) ... 607s Selecting previously unselected package r-cran-brio. 607s Preparing to unpack .../294-r-cran-brio_1.1.4-1_amd64.deb ... 607s Unpacking r-cran-brio (1.1.4-1) ... 607s Selecting previously unselected package r-cran-ps. 607s Preparing to unpack .../295-r-cran-ps_1.7.6-1_amd64.deb ... 607s Unpacking r-cran-ps (1.7.6-1) ... 607s Selecting previously unselected package r-cran-processx. 607s Preparing to unpack .../296-r-cran-processx_3.8.3-1_amd64.deb ... 607s Unpacking r-cran-processx (3.8.3-1) ... 607s Selecting previously unselected package r-cran-callr. 607s Preparing to unpack .../297-r-cran-callr_3.7.3-2_all.deb ... 607s Unpacking r-cran-callr (3.7.3-2) ... 607s Selecting previously unselected package r-cran-clipr. 607s Preparing to unpack .../298-r-cran-clipr_0.8.0-1_all.deb ... 607s Unpacking r-cran-clipr (0.8.0-1) ... 607s Selecting previously unselected package r-cran-credentials. 607s Preparing to unpack .../299-r-cran-credentials_2.0.1-1_all.deb ... 607s Unpacking r-cran-credentials (2.0.1-1) ... 607s Selecting previously unselected package r-cran-desc. 607s Preparing to unpack .../300-r-cran-desc_1.4.3-1_all.deb ... 607s Unpacking r-cran-desc (1.4.3-1) ... 607s Selecting previously unselected package r-cran-rstudioapi. 607s Preparing to unpack .../301-r-cran-rstudioapi_0.15.0-1_all.deb ... 607s Unpacking r-cran-rstudioapi (0.15.0-1) ... 607s Selecting previously unselected package r-cran-zip. 607s Preparing to unpack .../302-r-cran-zip_2.3.1-1_amd64.deb ... 607s Unpacking r-cran-zip (2.3.1-1) ... 607s Selecting previously unselected package r-cran-gert. 607s Preparing to unpack .../303-r-cran-gert_2.0.1+dfsg-1_amd64.deb ... 607s Unpacking r-cran-gert (2.0.1+dfsg-1) ... 607s Selecting previously unselected package r-cran-gitcreds. 607s Preparing to unpack .../304-r-cran-gitcreds_0.1.2-1_all.deb ... 607s Unpacking r-cran-gitcreds (0.1.2-1) ... 607s Selecting previously unselected package r-cran-httr2. 607s Preparing to unpack .../305-r-cran-httr2_1.0.0-1_all.deb ... 607s Unpacking r-cran-httr2 (1.0.0-1) ... 607s Selecting previously unselected package r-cran-ini. 607s Preparing to unpack .../306-r-cran-ini_0.3.1-2build1_all.deb ... 607s Unpacking r-cran-ini (0.3.1-2build1) ... 607s Selecting previously unselected package r-cran-gh. 607s Preparing to unpack .../307-r-cran-gh_1.4.0-1_all.deb ... 607s Unpacking r-cran-gh (1.4.0-1) ... 607s Selecting previously unselected package r-cran-rprojroot. 607s Preparing to unpack .../308-r-cran-rprojroot_2.0.4-1_all.deb ... 607s Unpacking r-cran-rprojroot (2.0.4-1) ... 607s Selecting previously unselected package r-cran-whisker. 607s Preparing to unpack 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update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 612s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 612s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 612s Setting up r-cran-bitops (1.0-7-1) ... 612s Setting up r-bioc-biocversion (3.18.1-1) ... 612s Setting up r-cran-rprojroot (2.0.4-1) ... 612s Setting up r-cran-bit64 (4.0.5-1) ... 612s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 612s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 612s Setting up r-cran-askpass (1.2.0-1) ... 612s Setting up r-cran-fastmap (1.1.1-1) ... 612s Setting up r-cran-png (0.1-8-1) ... 612s Setting up r-bioc-biobase (2.62.0-1) ... 612s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 612s Setting up r-cran-rstudioapi (0.15.0-1) ... 612s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 612s Setting up r-cran-utf8 (1.2.4-1) ... 612s Setting up 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r-cran-pkgdown (2.0.7-2) ... 612s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 612s Setting up r-bioc-genomicalignments (1.38.2-1) ... 612s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 612s Setting up r-bioc-rtracklayer (1.62.0-1) ... 612s Setting up r-bioc-singlecellexperiment (1.24.0+ds-1) ... 612s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 612s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 612s Setting up r-cran-profvis (0.3.8+dfsg-1) ... 612s Setting up r-bioc-fishpond (2.8.0+ds-1) ... 612s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 612s Setting up r-cran-dt (0.31+dfsg-1) ... 612s Setting up r-cran-devtools (2.4.5-1) ... 612s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 612s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 612s Setting up r-bioc-tximeta (1.20.3+dfsg-1) ... 612s Processing triggers for man-db (2.12.0-3) ... 613s Processing triggers for install-info (7.1-3) ... 613s Processing triggers for libc-bin (2.39-0ubuntu2) ... 617s Reading package lists... 617s Building dependency tree... 617s Reading state information... 617s Starting pkgProblemResolver with broken count: 0 617s Starting 2 pkgProblemResolver with broken count: 0 617s Done 618s The following NEW packages will be installed: 618s autopkgtest-satdep 618s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 618s Need to get 0 B/696 B of archives. 618s After this operation, 0 B of additional disk space will be used. 618s Get:1 /tmp/autopkgtest.qCXpWl/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 618s Selecting previously unselected package autopkgtest-satdep. 618s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 118778 files and directories currently installed.) 618s Preparing to unpack .../2-autopkgtest-satdep.deb ... 618s Unpacking autopkgtest-satdep (0) ... 618s Setting up autopkgtest-satdep (0) ... 620s (Reading database ... 118778 files and directories currently installed.) 620s Removing autopkgtest-satdep (0) ... 620s autopkgtest [05:32:24]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 620s autopkgtest [05:32:24]: test pkg-r-autopkgtest: [----------------------- 620s Test: Try to load the R library tximeta 620s 620s R version 4.3.2 (2023-10-31) -- "Eye Holes" 620s Copyright (C) 2023 The R Foundation for Statistical Computing 620s Platform: x86_64-pc-linux-gnu (64-bit) 620s 620s R is free software and comes with ABSOLUTELY NO WARRANTY. 620s You are welcome to redistribute it under certain conditions. 620s Type 'license()' or 'licence()' for distribution details. 620s 620s R is a collaborative project with many contributors. 620s Type 'contributors()' for more information and 620s 'citation()' on how to cite R or R packages in publications. 620s 620s Type 'demo()' for some demos, 'help()' for on-line help, or 620s 'help.start()' for an HTML browser interface to help. 620s Type 'q()' to quit R. 620s 620s > library('tximeta') 631s > 631s > 631s Other tests are currently unsupported! 631s They will be progressively added. 631s autopkgtest [05:32:35]: test pkg-r-autopkgtest: -----------------------] 632s pkg-r-autopkgtest PASS 632s autopkgtest [05:32:36]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 632s autopkgtest [05:32:36]: @@@@@@@@@@@@@@@@@@@@ summary 632s pkg-r-autopkgtest PASS 642s Creating nova instance adt-noble-i386-r-bioc-tximeta-20240322-052203-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...