0s autopkgtest [05:08:23]: starting date and time: 2024-03-22 05:08:23+0000 0s autopkgtest [05:08:23]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [05:08:23]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.t50siqym/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-summarizedexperiment --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-5.secgroup --name adt-noble-i386-r-bioc-summarizedexperiment-20240322-050823-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 684s autopkgtest [05:19:47]: testbed dpkg architecture: amd64 684s autopkgtest [05:19:47]: testbed apt version: 2.7.12 684s autopkgtest [05:19:47]: test architecture: i386 684s autopkgtest [05:19:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 685s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 685s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 685s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 685s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 685s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3803 kB] 685s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [459 kB] 685s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [695 kB] 685s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 685s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 685s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 685s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 685s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4245 kB] 685s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1274 kB] 685s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 685s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 685s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 685s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 690s Fetched 11.3 MB in 2s (5748 kB/s) 690s Reading package lists... 693s Reading package lists... 693s Building dependency tree... 693s Reading state information... 694s Calculating upgrade... 694s The following packages will be upgraded: 694s cloud-init fonts-ubuntu-console python3-markupsafe 694s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 694s Need to get 629 kB of archives. 694s After this operation, 11.3 kB disk space will be freed. 694s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 694s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 694s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 695s Preconfiguring packages ... 695s Fetched 629 kB in 0s (13.5 MB/s) 695s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 695s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 695s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 695s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 695s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 695s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 696s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 696s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 696s Setting up cloud-init (24.1.2-0ubuntu1) ... 698s Setting up python3-markupsafe (2.1.5-1build1) ... 698s Processing triggers for man-db (2.12.0-3) ... 699s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 700s Reading package lists... 700s Building dependency tree... 700s Reading state information... 701s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 702s sh: Attempting to set up Debian/Ubuntu apt sources automatically 702s sh: Distribution appears to be Ubuntu 703s Reading package lists... 704s Building dependency tree... 704s Reading state information... 704s eatmydata is already the newest version (131-1). 704s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 704s Reading package lists... 704s Building dependency tree... 704s Reading state information... 705s dbus is already the newest version (1.14.10-4ubuntu1). 705s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 705s Reading package lists... 705s Building dependency tree... 705s Reading state information... 706s rng-tools-debian is already the newest version (2.4). 706s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 706s Reading package lists... 706s Building dependency tree... 706s Reading state information... 707s The following packages will be REMOVED: 707s cloud-init* python3-configobj* python3-debconf* 707s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 707s After this operation, 3256 kB disk space will be freed. 707s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 707s Removing cloud-init (24.1.2-0ubuntu1) ... 708s Removing python3-configobj (5.0.8-3) ... 708s Removing python3-debconf (1.5.86) ... 708s Processing triggers for man-db (2.12.0-3) ... 709s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 709s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 709s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 710s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 710s invoke-rc.d: policy-rc.d denied execution of try-restart. 710s Reading package lists... 710s Building dependency tree... 710s Reading state information... 711s linux-generic is already the newest version (6.8.0-11.11+1). 711s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 711s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 711s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 711s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 715s Reading package lists... 715s Reading package lists... 715s Building dependency tree... 715s Reading state information... 716s Calculating upgrade... 716s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 716s Reading package lists... 717s Building dependency tree... 717s Reading state information... 717s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 717s autopkgtest [05:20:20]: rebooting testbed after setup commands that affected boot 743s autopkgtest [05:20:46]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 744s autopkgtest [05:20:47]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-summarizedexperiment 745s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-summarizedexperiment 1.32.0+dfsg-1 (dsc) [2521 B] 745s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-summarizedexperiment 1.32.0+dfsg-1 (tar) [75.3 kB] 745s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-summarizedexperiment 1.32.0+dfsg-1 (diff) [5236 B] 745s gpgv: Signature made Thu Nov 30 01:57:44 2023 UTC 745s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 745s gpgv: issuer "plessy@debian.org" 745s gpgv: Can't check signature: No public key 745s dpkg-source: warning: cannot verify inline signature for ./r-bioc-summarizedexperiment_1.32.0+dfsg-1.dsc: no acceptable signature found 745s autopkgtest [05:20:48]: testing package r-bioc-summarizedexperiment version 1.32.0+dfsg-1 745s autopkgtest [05:20:48]: build not needed 747s autopkgtest [05:20:50]: test pkg-r-autopkgtest: preparing testbed 754s Note, using file '/tmp/autopkgtest.vgfCOC/1-autopkgtest-satdep.dsc' to get the build dependencies 754s Reading package lists... 755s Building dependency tree... 755s Reading state information... 755s Starting pkgProblemResolver with broken count: 0 755s Starting 2 pkgProblemResolver with broken count: 0 755s Done 756s The following NEW packages will be installed: 756s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 756s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 756s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 756s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 756s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 756s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu hdf5-helpers 756s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 756s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 756s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 756s libcrypt-dev libcurl4-openssl-dev libdatrie1 libdeflate0 libfontconfig1 756s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 756s libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev 756s libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 756s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 756s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 756s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 756s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 756s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 756s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 756s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 756s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 756s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 756s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 756s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 756s libpotrace0 libptexenc1 libquadmath0 libreadline-dev libsharpyuv0 libsm6 756s libsnappy1v5 libssl-dev libstdc++-13-dev libsynctex2 libsz2 libtcl8.6 756s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 756s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 756s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 756s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 756s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 756s r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase 756s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 756s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray 756s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 756s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-hdf5array r-bioc-iranges 756s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters 756s r-bioc-rhdf5lib r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 756s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 756s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 756s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 756s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio 756s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools 756s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 756s r-cran-dbplyr r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr 756s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-filelock 756s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 756s r-cran-futile.options r-cran-generics r-cran-glue r-cran-highr r-cran-hms 756s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite 756s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle 756s r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats 756s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgbuild 756s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png 756s r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 756s r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp 756s r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rjson r-cran-rlang 756s r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-runit r-cran-sass 756s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 756s r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 756s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr 756s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 756s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 756s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 756s 0 upgraded, 308 newly installed, 0 to remove and 0 not upgraded. 756s Need to get 447 MB of archives. 756s After this operation, 1398 MB of additional disk space will be used. 756s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 756s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 756s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 756s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 756s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 756s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 756s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 756s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 756s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 756s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 757s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 757s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 757s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 757s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 757s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 757s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 757s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 757s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 757s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 757s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 757s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 757s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 757s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 757s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 757s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 757s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 757s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 757s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 757s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 757s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 757s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 757s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 757s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 757s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 757s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 757s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 757s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 757s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 757s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 757s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 757s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 757s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 757s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 757s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 757s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 757s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 757s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 758s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 758s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 758s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 758s Get:51 http://ftpmaster.internal/ubuntu noble/universe amd64 hdf5-helpers amd64 1.10.10+repack-3ubuntu1 [15.5 kB] 758s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 758s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 758s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 758s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 758s Get:56 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 758s Get:57 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 758s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 758s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 758s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libsnappy1v5 amd64 1.1.10-1 [28.4 kB] 758s Get:61 http://ftpmaster.internal/ubuntu noble/universe amd64 libblosc1 amd64 1.21.5+ds-1 [36.5 kB] 758s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 758s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 758s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 758s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 758s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 758s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 758s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 758s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 758s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libcurl4-openssl-dev amd64 8.5.0-2ubuntu2 [446 kB] 758s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 758s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 758s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 758s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 758s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 758s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 758s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-cpp-103-1 amd64 1.10.10+repack-3ubuntu1 [128 kB] 758s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-fortran-102 amd64 1.10.10+repack-3ubuntu1 [86.4 kB] 758s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB] 758s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-fortran-100 amd64 1.10.10+repack-3ubuntu1 [32.5 kB] 758s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-cpp-100 amd64 1.10.10+repack-3ubuntu1 [11.0 kB] 758s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 758s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 758s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 758s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 758s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 758s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 758s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec-dev amd64 1.1.2-1 [19.5 kB] 758s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libssl-dev amd64 3.0.10-1ubuntu4 [2400 kB] 758s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-dev amd64 1.10.10+repack-3ubuntu1 [2826 kB] 758s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 758s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 758s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 758s Get:94 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 758s Get:95 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 758s Get:96 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 758s Get:97 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 758s Get:98 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 758s Get:99 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 758s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 758s Get:101 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 758s Get:102 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 758s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 758s Get:104 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 758s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 758s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 758s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 758s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 758s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 758s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 758s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 758s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 758s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 758s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 758s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 758s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 758s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 758s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 758s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 758s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 758s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 758s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 758s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 758s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 758s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 758s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 758s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 758s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 758s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 758s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 758s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 758s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 758s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 758s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 758s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 758s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 758s Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 758s Get:138 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 758s Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 758s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 758s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 758s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 758s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 758s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 758s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 758s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 758s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 758s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 758s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 758s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 758s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 758s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 758s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 759s Get:154 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 759s Get:155 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 759s Get:156 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 759s Get:157 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 759s Get:158 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 759s Get:159 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 759s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 759s Get:161 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 759s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 759s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 759s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 759s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 759s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 759s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 759s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 759s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 759s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 759s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 759s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 759s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 759s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 759s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 759s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 759s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 759s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 759s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 759s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 759s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 759s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 759s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 759s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 759s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 759s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 759s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 759s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 759s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 759s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 759s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 759s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 759s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 759s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 759s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 759s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 759s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 759s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 759s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 759s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 759s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 759s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 759s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 759s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 759s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 759s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 759s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 759s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 759s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 759s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 759s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 759s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 759s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 759s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 759s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 759s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 759s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 759s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 760s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 760s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 760s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 760s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 760s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 760s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 760s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 760s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 760s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 760s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 760s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 760s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 760s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 760s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 760s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 760s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 760s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 760s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 760s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 760s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 760s Get:239 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 760s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 760s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 760s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 760s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 760s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 760s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 760s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 760s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 760s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 760s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 760s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 760s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 760s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 760s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 760s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 760s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 760s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 760s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 760s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 760s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 760s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 760s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 760s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 760s Get:263 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 760s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 760s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 760s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 760s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 761s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 761s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 761s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 761s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 761s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 761s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 761s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 761s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 761s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 761s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 761s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 761s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 761s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 761s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 761s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 761s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 761s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 761s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 761s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 761s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 761s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 761s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 761s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 761s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5lib amd64 1.24.2+dfsg-1 [96.2 kB] 761s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5filters amd64 1.14.1+dfsg-3 [136 kB] 761s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5 amd64 2.46.1+dfsg-1 [808 kB] 761s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-hdf5array amd64 1.30.1-1 [8759 kB] 761s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 761s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 761s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 761s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 761s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 761s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 761s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 761s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 761s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 761s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 761s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 761s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 761s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 761s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 762s Preconfiguring packages ... 762s Fetched 447 MB in 5s (91.4 MB/s) 762s Selecting previously unselected package libc-dev-bin. 763s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 763s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 763s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 763s Selecting previously unselected package linux-libc-dev:amd64. 763s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 763s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 763s Selecting previously unselected package libcrypt-dev:amd64. 763s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 763s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 763s Selecting previously unselected package libtirpc-dev:amd64. 763s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 763s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 763s Selecting previously unselected package libnsl-dev:amd64. 763s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 763s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 763s Selecting previously unselected package rpcsvc-proto. 763s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 763s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 763s Selecting previously unselected package libc6-dev:amd64. 763s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 763s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 763s Selecting previously unselected package libisl23:amd64. 763s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 763s Unpacking libisl23:amd64 (0.26-3) ... 763s Selecting previously unselected package libmpc3:amd64. 763s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 763s Unpacking libmpc3:amd64 (1.3.1-1) ... 764s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 764s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 764s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 764s Selecting previously unselected package cpp-13. 764s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 764s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 764s Selecting previously unselected package cpp-x86-64-linux-gnu. 764s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 764s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 764s Selecting previously unselected package cpp. 764s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 764s Unpacking cpp (4:13.2.0-7ubuntu1) ... 764s Selecting previously unselected package libcc1-0:amd64. 764s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 764s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 764s Selecting previously unselected package libgomp1:amd64. 764s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 764s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 764s Selecting previously unselected package libitm1:amd64. 764s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 764s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 764s Selecting previously unselected package libatomic1:amd64. 764s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 764s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 764s Selecting previously unselected package libasan8:amd64. 764s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 764s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 765s Selecting previously unselected package liblsan0:amd64. 765s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 765s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 765s Selecting previously unselected package libtsan2:amd64. 765s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 765s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 765s Selecting previously unselected package libubsan1:amd64. 765s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 765s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 765s Selecting previously unselected package libhwasan0:amd64. 765s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 765s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 765s Selecting previously unselected package libquadmath0:amd64. 765s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 765s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 765s Selecting previously unselected package libgcc-13-dev:amd64. 765s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 765s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 765s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 765s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 765s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 765s Selecting previously unselected package gcc-13. 765s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 765s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 765s Selecting previously unselected package gcc-x86-64-linux-gnu. 765s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 765s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 765s Selecting previously unselected package gcc. 765s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 765s Unpacking gcc (4:13.2.0-7ubuntu1) ... 765s Selecting previously unselected package libstdc++-13-dev:amd64. 765s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 765s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 766s Selecting previously unselected package g++-13-x86-64-linux-gnu. 766s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 766s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 766s Selecting previously unselected package g++-13. 766s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 766s Unpacking g++-13 (13.2.0-17ubuntu2) ... 766s Selecting previously unselected package g++-x86-64-linux-gnu. 766s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 766s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 766s Selecting previously unselected package g++. 766s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 766s Unpacking g++ (4:13.2.0-7ubuntu1) ... 766s Selecting previously unselected package build-essential. 766s Preparing to unpack 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fonts-mathjax (2.7.9+dfsg-1) ... 767s Selecting previously unselected package libgfortran5:amd64. 767s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 767s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 767s Selecting previously unselected package libgfortran-13-dev:amd64. 767s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 767s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 767s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 767s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 767s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 768s Selecting previously unselected package gfortran-13. 768s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 768s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 768s Selecting previously unselected package gfortran-x86-64-linux-gnu. 768s Preparing to unpack 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768s Unpacking libaec0:amd64 (1.1.2-1) ... 768s Selecting previously unselected package libio-string-perl. 768s Preparing to unpack .../054-libio-string-perl_1.08-4_all.deb ... 768s Unpacking libio-string-perl (1.08-4) ... 768s Selecting previously unselected package liblatex-tounicode-perl. 768s Preparing to unpack .../055-liblatex-tounicode-perl_0.54-2_all.deb ... 768s Unpacking liblatex-tounicode-perl (0.54-2) ... 768s Selecting previously unselected package libbibtex-parser-perl. 768s Preparing to unpack .../056-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 768s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 768s Selecting previously unselected package libblas3:amd64. 768s Preparing to unpack .../057-libblas3_3.12.0-3_amd64.deb ... 768s Unpacking libblas3:amd64 (3.12.0-3) ... 768s Selecting previously unselected package libblas-dev:amd64. 768s Preparing to unpack .../058-libblas-dev_3.12.0-3_amd64.deb ... 768s Unpacking libblas-dev:amd64 (3.12.0-3) ... 768s Selecting previously unselected package libsnappy1v5:amd64. 768s Preparing to unpack .../059-libsnappy1v5_1.1.10-1_amd64.deb ... 768s Unpacking libsnappy1v5:amd64 (1.1.10-1) ... 768s Selecting previously unselected package libblosc1:amd64. 768s Preparing to unpack .../060-libblosc1_1.21.5+ds-1_amd64.deb ... 768s Unpacking libblosc1:amd64 (1.21.5+ds-1) ... 768s Selecting previously unselected package libboost1.83-dev:amd64. 768s Preparing to unpack .../061-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 768s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 772s Selecting previously unselected package libboost-dev:amd64. 772s Preparing to unpack .../062-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 772s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ... 772s Selecting previously unselected package libbz2-dev:amd64. 772s Preparing to unpack .../063-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 772s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 772s Selecting previously unselected package libpixman-1-0:amd64. 772s Preparing to unpack .../064-libpixman-1-0_0.42.2-1_amd64.deb ... 772s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 772s Selecting previously unselected package libxcb-render0:amd64. 772s Preparing to unpack .../065-libxcb-render0_1.15-1_amd64.deb ... 772s Unpacking libxcb-render0:amd64 (1.15-1) ... 772s Selecting previously unselected package libxcb-shm0:amd64. 772s Preparing to unpack .../066-libxcb-shm0_1.15-1_amd64.deb ... 772s Unpacking libxcb-shm0:amd64 (1.15-1) ... 772s Selecting previously unselected package libxrender1:amd64. 772s Preparing to unpack .../067-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 772s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 772s Selecting previously unselected package libcairo2:amd64. 772s Preparing to unpack .../068-libcairo2_1.18.0-1_amd64.deb ... 772s Unpacking libcairo2:amd64 (1.18.0-1) ... 772s Selecting previously unselected package libcurl4-openssl-dev:amd64. 772s Preparing to unpack .../069-libcurl4-openssl-dev_8.5.0-2ubuntu2_amd64.deb ... 772s Unpacking libcurl4-openssl-dev:amd64 (8.5.0-2ubuntu2) ... 772s Selecting previously unselected package libdatrie1:amd64. 772s Preparing to unpack .../070-libdatrie1_0.2.13-3_amd64.deb ... 772s Unpacking libdatrie1:amd64 (0.2.13-3) ... 772s Selecting previously unselected package libdeflate0:amd64. 772s Preparing to unpack .../071-libdeflate0_1.19-1_amd64.deb ... 772s Unpacking libdeflate0:amd64 (1.19-1) ... 772s Selecting previously unselected package libgraphite2-3:amd64. 772s Preparing to unpack .../072-libgraphite2-3_1.3.14-2_amd64.deb ... 772s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 772s Selecting previously unselected package libharfbuzz0b:amd64. 772s Preparing to unpack .../073-libharfbuzz0b_8.3.0-2_amd64.deb ... 772s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 772s Selecting previously unselected package libsz2:amd64. 772s Preparing to unpack .../074-libsz2_1.1.2-1_amd64.deb ... 772s Unpacking libsz2:amd64 (1.1.2-1) ... 772s Selecting previously unselected package 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Selecting previously unselected package libjpeg8:amd64. 773s Preparing to unpack .../084-libjpeg8_8c-2ubuntu11_amd64.deb ... 773s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 773s Selecting previously unselected package libjpeg8-dev:amd64. 773s Preparing to unpack .../085-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 773s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 773s Selecting previously unselected package libjpeg-dev:amd64. 773s Preparing to unpack .../086-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 773s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 773s Selecting previously unselected package libaec-dev:amd64. 773s Preparing to unpack .../087-libaec-dev_1.1.2-1_amd64.deb ... 773s Unpacking libaec-dev:amd64 (1.1.2-1) ... 773s Selecting previously unselected package libssl-dev:amd64. 773s Preparing to unpack .../088-libssl-dev_3.0.10-1ubuntu4_amd64.deb ... 773s Unpacking libssl-dev:amd64 (3.0.10-1ubuntu4) ... 773s Selecting previously unselected package libhdf5-dev. 773s Preparing to unpack .../089-libhdf5-dev_1.10.10+repack-3ubuntu1_amd64.deb ... 773s Unpacking libhdf5-dev (1.10.10+repack-3ubuntu1) ... 773s Selecting previously unselected package x11-common. 773s Preparing to unpack .../090-x11-common_1%3a7.7+23ubuntu2_all.deb ... 773s Unpacking x11-common (1:7.7+23ubuntu2) ... 773s Selecting previously unselected package libice6:amd64. 773s Preparing to unpack .../091-libice6_2%3a1.0.10-1build2_amd64.deb ... 773s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 773s Selecting previously unselected package libicu-dev:amd64. 773s Preparing to unpack .../092-libicu-dev_74.2-1ubuntu1_amd64.deb ... 773s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 774s Selecting previously unselected package libjs-bootstrap. 774s Preparing to unpack .../093-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 774s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 774s Selecting previously unselected package libjs-popper.js. 774s Preparing to unpack .../094-libjs-popper.js_1.16.1+ds-6_all.deb ... 774s 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package libjs-jquery-datatables. 774s Preparing to unpack .../100-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 774s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 774s Selecting previously unselected package libjs-sifter.js. 774s Preparing to unpack .../101-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 774s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 774s Selecting previously unselected package libjs-microplugin.js. 774s Preparing to unpack .../102-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 774s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 774s Selecting previously unselected package libjs-jquery-selectize.js. 774s Preparing to unpack .../103-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 774s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 774s Selecting previously unselected package libjs-jquery-ui. 774s Preparing to unpack .../104-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 774s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 774s Selecting previously unselected package libjs-json. 774s Preparing to unpack .../105-libjs-json_0~20221030+~1.0.8-1_all.deb ... 774s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 774s Selecting previously unselected package libjs-lunr. 774s Preparing to unpack .../106-libjs-lunr_2.3.9~dfsg-2_all.deb ... 774s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 774s Selecting previously unselected package libjs-prettify. 774s Preparing to unpack .../107-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 774s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 775s Selecting previously unselected package libkpathsea6:amd64. 775s Preparing to unpack .../108-libkpathsea6_2023.20230311.66589-9_amd64.deb ... 775s Unpacking libkpathsea6:amd64 (2023.20230311.66589-9) ... 775s Selecting previously unselected package liblapack3:amd64. 775s Preparing to unpack .../109-liblapack3_3.12.0-3_amd64.deb ... 775s Unpacking liblapack3:amd64 (3.12.0-3) ... 775s Selecting previously unselected package liblapack-dev:amd64. 775s 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Unpacking libthai0:amd64 (0.1.29-2) ... 775s Selecting previously unselected package libpango-1.0-0:amd64. 775s Preparing to unpack .../116-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 775s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 775s Selecting previously unselected package libpangoft2-1.0-0:amd64. 775s Preparing to unpack .../117-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 775s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 775s Selecting previously unselected package libpangocairo-1.0-0:amd64. 775s Preparing to unpack .../118-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 775s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 775s Selecting previously unselected package libpaper1:amd64. 775s Preparing to unpack .../119-libpaper1_1.1.29_amd64.deb ... 775s Unpacking libpaper1:amd64 (1.1.29) ... 775s Selecting previously unselected package libpaper-utils. 775s Preparing to unpack .../120-libpaper-utils_1.1.29_amd64.deb ... 775s Unpacking libpaper-utils (1.1.29) ... 775s 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unselected package libpng-dev:amd64. 776s Preparing to unpack .../126-libpng-dev_1.6.43-1_amd64.deb ... 776s Unpacking libpng-dev:amd64 (1.6.43-1) ... 776s Selecting previously unselected package libpotrace0:amd64. 776s Preparing to unpack .../127-libpotrace0_1.16-2_amd64.deb ... 776s Unpacking libpotrace0:amd64 (1.16-2) ... 776s Selecting previously unselected package libptexenc1:amd64. 776s Preparing to unpack .../128-libptexenc1_2023.20230311.66589-9_amd64.deb ... 776s Unpacking libptexenc1:amd64 (2023.20230311.66589-9) ... 776s Selecting previously unselected package libreadline-dev:amd64. 776s Preparing to unpack .../129-libreadline-dev_8.2-3_amd64.deb ... 776s Unpacking libreadline-dev:amd64 (8.2-3) ... 776s Selecting previously unselected package libsharpyuv0:amd64. 776s Preparing to unpack .../130-libsharpyuv0_1.3.2-0.4_amd64.deb ... 776s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 776s Selecting previously unselected package libsm6:amd64. 776s Preparing to unpack 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Selecting previously unselected package libxt6:amd64. 776s Preparing to unpack .../142-libxt6_1%3a1.2.1-1.1_amd64.deb ... 776s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 777s Selecting previously unselected package libxmu6:amd64. 777s Preparing to unpack .../143-libxmu6_2%3a1.1.3-3_amd64.deb ... 777s Unpacking libxmu6:amd64 (2:1.1.3-3) ... 777s Selecting previously unselected package libxpm4:amd64. 777s Preparing to unpack .../144-libxpm4_1%3a3.5.17-1_amd64.deb ... 777s Unpacking libxpm4:amd64 (1:3.5.17-1) ... 777s Selecting previously unselected package libxaw7:amd64. 777s Preparing to unpack .../145-libxaw7_2%3a1.0.14-1_amd64.deb ... 777s Unpacking libxaw7:amd64 (2:1.0.14-1) ... 777s Selecting previously unselected package libxi6:amd64. 777s Preparing to unpack .../146-libxi6_2%3a1.8.1-1_amd64.deb ... 777s Unpacking libxi6:amd64 (2:1.8.1-1) ... 777s Selecting previously unselected package libzzip-0-13:amd64. 777s Preparing to unpack .../147-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... 777s Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 777s Selecting previously unselected package node-bootstrap-sass. 777s Preparing to unpack .../148-node-bootstrap-sass_3.4.3-2_all.deb ... 777s Unpacking node-bootstrap-sass (3.4.3-2) ... 777s Selecting previously unselected package node-html5shiv. 777s Preparing to unpack .../149-node-html5shiv_3.7.3+dfsg-5_all.deb ... 777s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 777s Selecting previously unselected package node-normalize.css. 777s Preparing to unpack .../150-node-normalize.css_8.0.1-5_all.deb ... 777s Unpacking node-normalize.css (8.0.1-5) ... 777s Selecting previously unselected package pandoc-data. 777s Preparing to unpack .../151-pandoc-data_3.1.3-1_all.deb ... 777s Unpacking pandoc-data (3.1.3-1) ... 777s Selecting previously unselected package pandoc. 777s Preparing to unpack .../152-pandoc_3.1.3+ds-2_amd64.deb ... 777s Unpacking pandoc (3.1.3+ds-2) ... 779s Selecting previously unselected package pkgconf-bin. 779s Preparing to unpack .../153-pkgconf-bin_1.8.1-2_amd64.deb ... 779s Unpacking pkgconf-bin (1.8.1-2) ... 779s Selecting previously unselected package pkgconf:amd64. 779s Preparing to unpack .../154-pkgconf_1.8.1-2_amd64.deb ... 779s Unpacking pkgconf:amd64 (1.8.1-2) ... 779s Selecting previously unselected package pkg-config:amd64. 779s Preparing to unpack .../155-pkg-config_1.8.1-2_amd64.deb ... 779s Unpacking pkg-config:amd64 (1.8.1-2) ... 779s Selecting previously unselected package zip. 779s Preparing to unpack .../156-zip_3.0-13_amd64.deb ... 779s Unpacking zip (3.0-13) ... 779s Selecting previously unselected package unzip. 779s Preparing to unpack .../157-unzip_6.0-28ubuntu3_amd64.deb ... 779s Unpacking unzip (6.0-28ubuntu3) ... 779s Selecting previously unselected package xdg-utils. 779s Preparing to unpack .../158-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 779s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 779s Selecting previously unselected package r-base-core. 779s Preparing to unpack .../159-r-base-core_4.3.2-1build1_amd64.deb ... 779s Unpacking r-base-core (4.3.2-1build1) ... 779s Selecting previously unselected package liblzma-dev:amd64. 779s Preparing to unpack .../160-liblzma-dev_5.4.5-0.3_amd64.deb ... 779s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 779s Selecting previously unselected package r-base-dev. 779s Preparing to unpack .../161-r-base-dev_4.3.2-1build1_all.deb ... 779s Unpacking r-base-dev (4.3.2-1build1) ... 779s Selecting previously unselected package pkg-r-autopkgtest. 779s Preparing to unpack .../162-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 779s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 779s Selecting previously unselected package r-bioc-biocgenerics. 779s Preparing to unpack .../163-r-bioc-biocgenerics_0.48.1-2_all.deb ... 779s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 779s Selecting previously unselected package r-bioc-biobase. 779s Preparing to unpack .../164-r-bioc-biobase_2.62.0-1_amd64.deb ... 779s Unpacking r-bioc-biobase (2.62.0-1) ... 779s Selecting previously unselected package r-bioc-s4vectors. 779s Preparing to unpack .../165-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 779s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 779s Selecting previously unselected package r-bioc-iranges. 779s Preparing to unpack .../166-r-bioc-iranges_2.36.0-1_amd64.deb ... 779s Unpacking r-bioc-iranges (2.36.0-1) ... 780s Selecting previously unselected package r-cran-dbi. 780s Preparing to unpack .../167-r-cran-dbi_1.2.2-1_all.deb ... 780s Unpacking r-cran-dbi (1.2.2-1) ... 780s Selecting previously unselected package r-cran-bit. 780s Preparing to unpack .../168-r-cran-bit_4.0.5-1_amd64.deb ... 780s Unpacking r-cran-bit (4.0.5-1) ... 780s Selecting previously unselected package r-cran-bit64. 780s Preparing to unpack .../169-r-cran-bit64_4.0.5-1_amd64.deb ... 780s Unpacking r-cran-bit64 (4.0.5-1) ... 780s Selecting previously unselected package r-cran-rlang. 780s Preparing to unpack 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780s Preparing to unpack .../176-r-cran-fastmap_1.1.1-1_amd64.deb ... 780s Unpacking r-cran-fastmap (1.1.1-1) ... 780s Selecting previously unselected package r-cran-cachem. 780s Preparing to unpack .../177-r-cran-cachem_1.0.8-1_amd64.deb ... 780s Unpacking r-cran-cachem (1.0.8-1) ... 780s Selecting previously unselected package r-cran-memoise. 780s Preparing to unpack .../178-r-cran-memoise_2.0.1-1_all.deb ... 780s Unpacking r-cran-memoise (2.0.1-1) ... 780s Selecting previously unselected package r-cran-pkgconfig. 780s Preparing to unpack .../179-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 780s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 780s Selecting previously unselected package r-cran-plogr. 780s Preparing to unpack .../180-r-cran-plogr_0.2.0-3build1_all.deb ... 780s Unpacking r-cran-plogr (0.2.0-3build1) ... 780s Selecting previously unselected package r-cran-cpp11. 780s Preparing to unpack .../181-r-cran-cpp11_0.4.7-1_all.deb ... 780s Unpacking r-cran-cpp11 (0.4.7-1) ... 780s Selecting previously unselected package r-cran-rsqlite. 780s Preparing to unpack .../182-r-cran-rsqlite_2.3.4-1_amd64.deb ... 780s Unpacking r-cran-rsqlite (2.3.4-1) ... 781s Selecting previously unselected package r-cran-curl. 781s Preparing to unpack .../183-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 781s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 781s Selecting previously unselected package r-cran-jsonlite. 781s Preparing to unpack .../184-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 781s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 781s Selecting previously unselected package r-cran-mime. 781s Preparing to unpack .../185-r-cran-mime_0.12-1_amd64.deb ... 781s Unpacking r-cran-mime (0.12-1) ... 781s Selecting previously unselected package r-cran-sys. 781s Preparing to unpack .../186-r-cran-sys_3.4.2-1_amd64.deb ... 781s Unpacking r-cran-sys (3.4.2-1) ... 781s Selecting previously unselected package r-cran-askpass. 781s Preparing to unpack .../187-r-cran-askpass_1.2.0-1_amd64.deb ... 781s Unpacking r-cran-askpass (1.2.0-1) ... 781s Selecting previously unselected package r-cran-openssl. 781s Preparing to unpack .../188-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 781s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 781s Selecting previously unselected package r-cran-r6. 781s Preparing to unpack .../189-r-cran-r6_2.5.1-1_all.deb ... 781s Unpacking r-cran-r6 (2.5.1-1) ... 781s Selecting previously unselected package r-cran-httr. 781s Preparing to unpack .../190-r-cran-httr_1.4.7+dfsg-1_all.deb ... 781s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 781s Selecting previously unselected package r-cran-png. 781s Preparing to unpack .../191-r-cran-png_0.1-8-1_amd64.deb ... 781s Unpacking r-cran-png (0.1-8-1) ... 781s Selecting previously unselected package r-bioc-zlibbioc. 781s Preparing to unpack .../192-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 781s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 781s Selecting previously unselected package r-bioc-xvector. 781s Preparing to unpack .../193-r-bioc-xvector_0.42.0-1_amd64.deb ... 781s Unpacking r-bioc-xvector (0.42.0-1) ... 781s Selecting previously unselected package r-cran-bitops. 781s Preparing to unpack .../194-r-cran-bitops_1.0-7-1_amd64.deb ... 781s Unpacking r-cran-bitops (1.0-7-1) ... 781s Selecting previously unselected package r-cran-rcurl. 781s Preparing to unpack .../195-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 781s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 781s Selecting previously unselected package r-bioc-genomeinfodbdata. 781s Preparing to unpack .../196-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 781s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 781s Selecting previously unselected package r-bioc-genomeinfodb. 781s Preparing to unpack .../197-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 781s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 781s Selecting previously unselected package r-cran-crayon. 781s Preparing to unpack .../198-r-cran-crayon_1.5.2-1_all.deb ... 781s Unpacking r-cran-crayon (1.5.2-1) ... 782s Selecting previously unselected package r-bioc-biostrings. 782s Preparing to unpack .../199-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 782s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 782s Selecting previously unselected package r-bioc-keggrest. 782s Preparing to unpack .../200-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 782s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 782s Selecting previously unselected package r-bioc-annotationdbi. 782s Preparing to unpack .../201-r-bioc-annotationdbi_1.64.1-1_all.deb ... 782s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 782s Selecting previously unselected package r-cran-xml. 782s Preparing to unpack .../202-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 782s Unpacking r-cran-xml (3.99-0.16.1-1) ... 782s Selecting previously unselected package r-cran-xtable. 782s Preparing to unpack .../203-r-cran-xtable_1%3a1.8-4-2_all.deb ... 782s Unpacking r-cran-xtable (1:1.8-4-2) ... 782s Selecting previously unselected package r-bioc-annotate. 782s Preparing to unpack .../204-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 782s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 782s Selecting previously unselected package r-cran-generics. 782s Preparing to unpack .../205-r-cran-generics_0.1.3-1_all.deb ... 782s Unpacking r-cran-generics (0.1.3-1) ... 782s Selecting previously unselected package r-cran-magrittr. 782s Preparing to unpack .../206-r-cran-magrittr_2.0.3-1_amd64.deb ... 782s Unpacking r-cran-magrittr (2.0.3-1) ... 782s Selecting previously unselected package r-cran-fansi. 782s Preparing to unpack .../207-r-cran-fansi_1.0.5-1_amd64.deb ... 782s Unpacking r-cran-fansi (1.0.5-1) ... 782s Selecting previously unselected package r-cran-utf8. 782s Preparing to unpack .../208-r-cran-utf8_1.2.4-1_amd64.deb ... 782s Unpacking r-cran-utf8 (1.2.4-1) ... 782s Selecting previously unselected package r-cran-pillar. 782s Preparing to unpack .../209-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 782s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 782s Selecting previously unselected package r-cran-tibble. 782s Preparing to unpack .../210-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 782s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 782s Selecting previously unselected package r-cran-withr. 783s Preparing to unpack .../211-r-cran-withr_2.5.0-1_all.deb ... 783s Unpacking r-cran-withr (2.5.0-1) ... 783s Selecting previously unselected package r-cran-tidyselect. 783s Preparing to unpack .../212-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 783s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 783s Selecting previously unselected package r-cran-dplyr. 783s Preparing to unpack .../213-r-cran-dplyr_1.1.4-1_amd64.deb ... 783s Unpacking r-cran-dplyr (1.1.4-1) ... 783s Selecting previously unselected package r-cran-purrr. 783s Preparing to unpack .../214-r-cran-purrr_1.0.2-1_amd64.deb ... 783s Unpacking r-cran-purrr (1.0.2-1) ... 783s Selecting previously unselected package r-cran-stringi. 783s Preparing to unpack .../215-r-cran-stringi_1.8.3-1_amd64.deb ... 783s Unpacking r-cran-stringi (1.8.3-1) ... 783s Selecting previously unselected package r-cran-stringr. 783s Preparing to unpack .../216-r-cran-stringr_1.5.1-1_all.deb ... 783s Unpacking r-cran-stringr (1.5.1-1) ... 783s Selecting previously unselected package r-cran-tidyr. 783s Preparing to unpack .../217-r-cran-tidyr_1.3.1-1_amd64.deb ... 783s Unpacking r-cran-tidyr (1.3.1-1) ... 783s Selecting previously unselected package r-cran-dbplyr. 783s Preparing to unpack .../218-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 783s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 783s Selecting previously unselected package r-cran-filelock. 783s Preparing to unpack .../219-r-cran-filelock_1.0.3-1_amd64.deb ... 783s Unpacking r-cran-filelock (1.0.3-1) ... 783s Selecting previously unselected package r-bioc-biocfilecache. 783s Preparing to unpack .../220-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 783s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 783s Selecting previously unselected package r-bioc-biocio. 783s Preparing to unpack .../221-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 783s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 783s Selecting previously unselected package r-cran-formatr. 783s Preparing to unpack .../222-r-cran-formatr_1.14-1_all.deb ... 783s Unpacking r-cran-formatr (1.14-1) ... 783s Selecting previously unselected package r-cran-lambda.r. 783s Preparing to unpack .../223-r-cran-lambda.r_1.2.4-2build1_all.deb ... 783s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 783s Selecting previously unselected package r-cran-futile.options. 783s Preparing to unpack .../224-r-cran-futile.options_1.0.1-3build1_all.deb ... 783s Unpacking r-cran-futile.options (1.0.1-3build1) ... 783s Selecting previously unselected package r-cran-futile.logger. 783s Preparing to unpack .../225-r-cran-futile.logger_1.4.3-4build1_all.deb ... 783s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 783s Selecting previously unselected package r-cran-snow. 783s Preparing to unpack .../226-r-cran-snow_1%3a0.4.4-2_all.deb ... 783s Unpacking r-cran-snow (1:0.4.4-2) ... 784s Selecting previously unselected package r-cran-codetools. 784s Preparing to unpack .../227-r-cran-codetools_0.2-19-1_all.deb ... 784s Unpacking r-cran-codetools (0.2-19-1) ... 784s Selecting previously unselected package r-cran-bh. 784s Preparing to unpack .../228-r-cran-bh_1.84.0-1_all.deb ... 784s Unpacking r-cran-bh (1.84.0-1) ... 784s Selecting previously unselected package r-bioc-biocparallel. 784s Preparing to unpack .../229-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 784s Unpacking r-bioc-biocparallel (1.36.0-1) ... 784s Selecting previously unselected package r-cran-base64enc. 784s Preparing to unpack .../230-r-cran-base64enc_0.1-3-3_amd64.deb ... 784s Unpacking r-cran-base64enc (0.1-3-3) ... 784s Selecting previously unselected package r-cran-digest. 784s Preparing to unpack .../231-r-cran-digest_0.6.34-1_amd64.deb ... 784s Unpacking r-cran-digest (0.6.34-1) ... 784s Selecting previously unselected package r-cran-ellipsis. 784s Preparing to unpack .../232-r-cran-ellipsis_0.3.2-2_amd64.deb ... 784s Unpacking r-cran-ellipsis (0.3.2-2) ... 784s Selecting previously unselected package r-cran-htmltools. 784s Preparing to unpack .../233-r-cran-htmltools_0.5.7-1_amd64.deb ... 784s Unpacking r-cran-htmltools (0.5.7-1) ... 784s Selecting previously unselected package r-cran-evaluate. 784s Preparing to unpack .../234-r-cran-evaluate_0.23-1_all.deb ... 784s Unpacking r-cran-evaluate (0.23-1) ... 784s Selecting previously unselected package r-cran-xfun. 784s Preparing to unpack .../235-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 784s Unpacking r-cran-xfun (0.41+dfsg-1) ... 784s Selecting previously unselected package r-cran-highr. 784s Preparing to unpack .../236-r-cran-highr_0.10+dfsg-1_all.deb ... 784s Unpacking r-cran-highr (0.10+dfsg-1) ... 784s Selecting previously unselected package r-cran-yaml. 784s Preparing to unpack .../237-r-cran-yaml_2.3.8-1_amd64.deb ... 784s Unpacking r-cran-yaml (2.3.8-1) ... 784s Selecting previously unselected package libjs-mathjax. 784s Preparing to unpack .../238-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 784s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 785s Selecting previously unselected package r-cran-knitr. 785s Preparing to unpack .../239-r-cran-knitr_1.45+dfsg-1_all.deb ... 785s Unpacking r-cran-knitr (1.45+dfsg-1) ... 785s Selecting previously unselected package r-cran-jquerylib. 785s Preparing to unpack .../240-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 785s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 785s Selecting previously unselected package r-cran-fs. 785s Preparing to unpack .../241-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 785s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 785s Selecting previously unselected package r-cran-rappdirs. 785s Preparing to unpack .../242-r-cran-rappdirs_0.3.3-1_amd64.deb ... 785s Unpacking r-cran-rappdirs (0.3.3-1) ... 785s Selecting previously unselected package r-cran-sass. 785s Preparing to unpack .../243-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 785s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 785s Selecting previously unselected package r-cran-bslib. 785s Preparing to unpack .../244-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 785s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 786s Selecting previously unselected package r-cran-fontawesome. 786s Preparing to unpack .../245-r-cran-fontawesome_0.5.2-1_all.deb ... 786s Unpacking r-cran-fontawesome (0.5.2-1) ... 786s Selecting previously unselected package r-cran-tinytex. 786s Preparing to unpack .../246-r-cran-tinytex_0.49-1_all.deb ... 786s Unpacking r-cran-tinytex (0.49-1) ... 786s Selecting previously unselected package libjs-modernizr. 786s Preparing to unpack .../247-libjs-modernizr_2.6.2+ds1-5_all.deb ... 786s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 786s Selecting previously unselected package r-cran-littler. 786s Preparing to unpack .../248-r-cran-littler_0.3.19-1_amd64.deb ... 786s Unpacking r-cran-littler (0.3.19-1) ... 786s Selecting previously unselected package r-cran-pkgkitten. 786s Preparing to unpack .../249-r-cran-pkgkitten_0.2.3-1_all.deb ... 786s Unpacking r-cran-pkgkitten (0.2.3-1) ... 786s Selecting previously unselected package r-cran-rcpp. 786s Preparing to unpack .../250-r-cran-rcpp_1.0.12-1_amd64.deb ... 786s Unpacking r-cran-rcpp (1.0.12-1) ... 786s Selecting previously unselected package r-cran-later. 786s Preparing to unpack .../251-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 786s Unpacking r-cran-later (1.3.2+dfsg-1) ... 786s Selecting previously unselected package r-cran-promises. 786s Preparing to unpack .../252-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 786s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 786s Selecting previously unselected package r-cran-httpuv. 786s Preparing to unpack .../253-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 786s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 786s Selecting previously unselected package r-cran-sourcetools. 786s Preparing to unpack .../254-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 786s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 786s Selecting previously unselected package r-cran-commonmark. 786s Preparing to unpack .../255-r-cran-commonmark_1.9.1-1_amd64.deb ... 786s Unpacking r-cran-commonmark (1.9.1-1) ... 786s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 786s Preparing to unpack .../256-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 786s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 786s Selecting previously unselected package r-cran-shiny. 786s Preparing to unpack .../257-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 786s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 787s Selecting previously unselected package r-cran-rmarkdown. 787s Preparing to unpack .../258-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 787s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 787s Selecting previously unselected package r-cran-bookdown. 787s Preparing to unpack .../259-r-cran-bookdown_0.37+dfsg-1_all.deb ... 787s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 787s Selecting previously unselected package r-cran-biocmanager. 787s Preparing to unpack .../260-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 787s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 787s Selecting previously unselected package tex-common. 787s Preparing to unpack .../261-tex-common_6.18_all.deb ... 787s Unpacking tex-common (6.18) ... 787s Selecting previously unselected package t1utils. 787s Preparing to unpack .../262-t1utils_1.41-4build2_amd64.deb ... 787s Unpacking t1utils (1.41-4build2) ... 787s Selecting previously unselected package texlive-binaries. 787s Preparing to unpack .../263-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 787s Unpacking texlive-binaries (2023.20230311.66589-9) ... 787s Selecting previously unselected package texlive-base. 787s Preparing to unpack .../264-texlive-base_2023.20240207-1_all.deb ... 787s Unpacking texlive-base (2023.20240207-1) ... 789s Selecting previously unselected package texlive-latex-base. 789s Preparing to unpack .../265-texlive-latex-base_2023.20240207-1_all.deb ... 789s Unpacking texlive-latex-base (2023.20240207-1) ... 790s Selecting previously unselected package texlive-bibtex-extra. 790s Preparing to unpack .../266-texlive-bibtex-extra_2023.20240207-1_all.deb ... 790s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 794s Selecting previously unselected package r-bioc-biocstyle. 794s Preparing to unpack .../267-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 794s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 794s Selecting previously unselected package r-cran-hms. 794s Preparing to unpack .../268-r-cran-hms_1.1.3-1_all.deb ... 794s Unpacking r-cran-hms (1.1.3-1) ... 794s Selecting previously unselected package r-cran-prettyunits. 794s Preparing to unpack .../269-r-cran-prettyunits_1.2.0-1_all.deb ... 794s Unpacking r-cran-prettyunits (1.2.0-1) ... 794s Selecting previously unselected package r-cran-progress. 794s Preparing to unpack .../270-r-cran-progress_1.2.3-1_all.deb ... 794s Unpacking r-cran-progress (1.2.3-1) ... 794s Selecting previously unselected package r-cran-xml2. 794s Preparing to unpack .../271-r-cran-xml2_1.3.6-1_amd64.deb ... 794s Unpacking r-cran-xml2 (1.3.6-1) ... 794s Selecting previously unselected package r-bioc-biomart. 794s Preparing to unpack .../272-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 794s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 794s Selecting previously unselected package r-cran-lattice. 794s Preparing to unpack .../273-r-cran-lattice_0.22-5-1_amd64.deb ... 794s Unpacking r-cran-lattice (0.22-5-1) ... 794s Selecting previously unselected package r-cran-matrix. 794s Preparing to unpack .../274-r-cran-matrix_1.6-5-1_amd64.deb ... 794s Unpacking r-cran-matrix (1.6-5-1) ... 795s Selecting previously unselected package r-cran-matrixstats. 795s Preparing to unpack .../275-r-cran-matrixstats_1.2.0-1_amd64.deb ... 795s Unpacking r-cran-matrixstats (1.2.0-1) ... 795s Selecting previously unselected package r-bioc-matrixgenerics. 795s Preparing to unpack .../276-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 795s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 795s Selecting previously unselected package r-cran-abind. 795s Preparing to unpack .../277-r-cran-abind_1.4-5-2_all.deb ... 795s Unpacking r-cran-abind (1.4-5-2) ... 795s Selecting previously unselected package r-bioc-s4arrays. 795s Preparing to unpack .../278-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 795s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 795s Selecting previously unselected package r-bioc-sparsearray. 795s Preparing to unpack .../279-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 795s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 795s Selecting previously unselected package r-bioc-delayedarray. 795s Preparing to unpack .../280-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 795s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 795s Selecting previously unselected package r-bioc-genomicranges. 795s Preparing to unpack .../281-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 795s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 795s Selecting previously unselected package r-bioc-summarizedexperiment. 795s Preparing to unpack .../282-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 795s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 795s Selecting previously unselected package r-bioc-rhtslib. 795s Preparing to unpack .../283-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 795s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 795s Selecting previously unselected package r-bioc-rsamtools. 795s Preparing to unpack .../284-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 795s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 795s Selecting previously unselected package r-bioc-genomicalignments. 795s Preparing to unpack .../285-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 795s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 795s Selecting previously unselected package r-cran-rjson. 795s Preparing to unpack .../286-r-cran-rjson_0.2.21-1_amd64.deb ... 795s Unpacking r-cran-rjson (0.2.21-1) ... 795s Selecting previously unselected package r-cran-restfulr. 795s Preparing to unpack .../287-r-cran-restfulr_0.0.15-1_amd64.deb ... 795s Unpacking r-cran-restfulr (0.0.15-1) ... 795s Selecting previously unselected package r-bioc-rtracklayer. 795s Preparing to unpack .../288-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 795s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 795s Selecting previously unselected package r-bioc-genomicfeatures. 796s Preparing to unpack .../289-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 796s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 796s Selecting previously unselected package r-bioc-rhdf5lib. 796s Preparing to unpack .../290-r-bioc-rhdf5lib_1.24.2+dfsg-1_amd64.deb ... 796s Unpacking r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 796s Selecting previously unselected package r-bioc-rhdf5filters. 796s Preparing to unpack .../291-r-bioc-rhdf5filters_1.14.1+dfsg-3_amd64.deb ... 796s Unpacking r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 796s Selecting previously unselected package r-bioc-rhdf5. 796s Preparing to unpack .../292-r-bioc-rhdf5_2.46.1+dfsg-1_amd64.deb ... 796s Unpacking r-bioc-rhdf5 (2.46.1+dfsg-1) ... 796s Selecting previously unselected package r-bioc-hdf5array. 796s Preparing to unpack .../293-r-bioc-hdf5array_1.30.1-1_amd64.deb ... 796s Unpacking r-bioc-hdf5array (1.30.1-1) ... 796s Selecting previously unselected package r-cran-brio. 796s Preparing to unpack .../294-r-cran-brio_1.1.4-1_amd64.deb ... 796s Unpacking r-cran-brio (1.1.4-1) ... 796s Selecting previously unselected package r-cran-ps. 796s Preparing to unpack .../295-r-cran-ps_1.7.6-1_amd64.deb ... 796s Unpacking r-cran-ps (1.7.6-1) ... 796s Selecting previously unselected package r-cran-processx. 796s Preparing to unpack .../296-r-cran-processx_3.8.3-1_amd64.deb ... 796s Unpacking r-cran-processx (3.8.3-1) ... 796s Selecting previously unselected package r-cran-callr. 796s Preparing to unpack .../297-r-cran-callr_3.7.3-2_all.deb ... 796s Unpacking r-cran-callr (3.7.3-2) ... 796s Selecting previously unselected package r-cran-desc. 796s Preparing to unpack .../298-r-cran-desc_1.4.3-1_all.deb ... 796s Unpacking r-cran-desc (1.4.3-1) ... 796s Selecting previously unselected package r-cran-diffobj. 796s Preparing to unpack .../299-r-cran-diffobj_0.3.5-1_amd64.deb ... 796s Unpacking r-cran-diffobj (0.3.5-1) ... 796s Selecting previously unselected package r-cran-pkgbuild. 796s Preparing to unpack .../300-r-cran-pkgbuild_1.4.3-1_all.deb ... 796s Unpacking r-cran-pkgbuild (1.4.3-1) ... 796s Selecting previously unselected package r-cran-rprojroot. 796s Preparing to unpack .../301-r-cran-rprojroot_2.0.4-1_all.deb ... 796s Unpacking r-cran-rprojroot (2.0.4-1) ... 796s 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804s Setting up r-bioc-iranges (2.36.0-1) ... 804s Setting up r-cran-rjson (0.2.21-1) ... 804s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 804s Setting up r-cran-restfulr (0.0.15-1) ... 804s Setting up r-cran-vctrs (0.6.5-1) ... 804s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 804s Setting up r-cran-ellipsis (0.3.2-2) ... 804s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 804s Setting up r-base-dev (4.3.2-1build1) ... 804s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 804s Setting up r-cran-stringr (1.5.1-1) ... 804s Setting up r-bioc-biocparallel (1.36.0-1) ... 804s Setting up r-cran-callr (3.7.3-2) ... 804s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 804s Setting up r-cran-desc (1.4.3-1) ... 804s Setting up r-cran-xml2 (1.3.6-1) ... 804s Setting up r-bioc-rhdf5 (2.46.1+dfsg-1) ... 804s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 804s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 804s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 804s Setting up texlive-bibtex-extra 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r-bioc-biostrings (2.70.2+dfsg-1) ... 804s Setting up r-cran-fontawesome (0.5.2-1) ... 804s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 804s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 804s Setting up r-cran-waldo (0.5.2-1build1) ... 804s Setting up r-cran-tidyr (1.3.1-1) ... 804s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 804s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 804s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 804s Setting up r-bioc-hdf5array (1.30.1-1) ... 804s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 804s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 804s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 804s Setting up r-bioc-annotationdbi (1.64.1-1) ... 804s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 804s Setting up r-cran-testthat (3.2.1-1) ... 804s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 804s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 804s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 804s Setting up r-bioc-genomicalignments (1.38.2-1) ... 804s Setting up r-cran-bookdown (0.37+dfsg-1) ... 804s Setting up r-bioc-rtracklayer (1.62.0-1) ... 804s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 804s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 804s Processing triggers for libc-bin (2.39-0ubuntu2) ... 804s Processing triggers for man-db (2.12.0-3) ... 806s Processing triggers for install-info (7.1-3) ... 806s Processing triggers for tex-common (6.18) ... 807s Running updmap-sys. This may take some time... done. 807s Running mktexlsr /var/lib/texmf ... done. 807s Building format(s) --all. 853s This may take some time... done. 855s Reading package lists... 855s Building dependency tree... 855s Reading state information... 856s Starting pkgProblemResolver with broken count: 0 856s Starting 2 pkgProblemResolver with broken count: 0 856s Done 857s The following NEW packages will be installed: 857s autopkgtest-satdep 857s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 857s Need to get 0 B/700 B of archives. 857s After this operation, 0 B of additional disk space will be used. 857s Get:1 /tmp/autopkgtest.vgfCOC/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 857s Selecting previously unselected package autopkgtest-satdep. 857s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 122967 files and directories currently installed.) 857s Preparing to unpack .../2-autopkgtest-satdep.deb ... 857s Unpacking autopkgtest-satdep (0) ... 857s Setting up autopkgtest-satdep (0) ... 860s (Reading database ... 122967 files and directories currently installed.) 860s Removing autopkgtest-satdep (0) ... 860s autopkgtest [05:22:43]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 860s autopkgtest [05:22:43]: test pkg-r-autopkgtest: [----------------------- 860s Test: Try to load the R library SummarizedExperiment 860s 860s R version 4.3.2 (2023-10-31) -- "Eye Holes" 860s Copyright (C) 2023 The R Foundation for Statistical Computing 860s Platform: x86_64-pc-linux-gnu (64-bit) 860s 860s R is free software and comes with ABSOLUTELY NO WARRANTY. 860s You are welcome to redistribute it under certain conditions. 860s Type 'license()' or 'licence()' for distribution details. 860s 860s R is a collaborative project with many contributors. 860s Type 'contributors()' for more information and 860s 'citation()' on how to cite R or R packages in publications. 860s 860s Type 'demo()' for some demos, 'help()' for on-line help, or 860s 'help.start()' for an HTML browser interface to help. 860s Type 'q()' to quit R. 860s 861s > library('SummarizedExperiment') 861s Loading required package: MatrixGenerics 861s Loading required package: matrixStats 861s 861s Attaching package: ‘MatrixGenerics’ 861s 861s The following objects are masked from ‘package:matrixStats’: 861s 861s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 861s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 861s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 861s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 861s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 861s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 861s colWeightedMeans, colWeightedMedians, colWeightedSds, 861s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 861s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 861s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 861s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 861s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 861s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 861s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 861s rowWeightedSds, rowWeightedVars 861s 861s Loading required package: GenomicRanges 861s Loading required package: stats4 861s Loading required package: BiocGenerics 861s 861s Attaching package: ‘BiocGenerics’ 861s 861s The following objects are masked from ‘package:stats’: 861s 861s IQR, mad, sd, var, xtabs 861s 861s The following objects are masked from ‘package:base’: 861s 861s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 861s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 861s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 861s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 861s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 861s table, tapply, union, unique, unsplit, which.max, which.min 861s 861s Loading required package: S4Vectors 862s 862s Attaching package: ‘S4Vectors’ 862s 862s The following object is masked from ‘package:utils’: 862s 862s findMatches 862s 862s The following objects are masked from ‘package:base’: 862s 862s expand.grid, I, unname 862s 862s Loading required package: IRanges 863s Loading required package: GenomeInfoDb 864s Loading required package: Biobase 864s Welcome to Bioconductor 864s 864s Vignettes contain introductory material; view with 864s 'browseVignettes()'. To cite Bioconductor, see 864s 'citation("Biobase")', and for packages 'citation("pkgname")'. 864s 864s 864s Attaching package: ‘Biobase’ 864s 864s The following object is masked from ‘package:MatrixGenerics’: 864s 864s rowMedians 864s 864s The following objects are masked from ‘package:matrixStats’: 864s 864s anyMissing, rowMedians 864s 868s > 868s > 868s Other tests are currently unsupported! 868s They will be progressively added. 868s autopkgtest [05:22:51]: test pkg-r-autopkgtest: -----------------------] 869s pkg-r-autopkgtest PASS 869s autopkgtest [05:22:52]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 869s autopkgtest [05:22:52]: @@@@@@@@@@@@@@@@@@@@ summary 869s pkg-r-autopkgtest PASS 883s Creating nova instance adt-noble-i386-r-bioc-summarizedexperiment-20240322-050823-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...