0s autopkgtest [05:06:27]: starting date and time: 2024-03-22 05:06:27+0000 0s autopkgtest [05:06:27]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [05:06:27]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.9g80lnaz/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-structuralvariantannotation --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-10.secgroup --name adt-noble-i386-r-bioc-structuralvariantannotation-20240322-050626-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 116s autopkgtest [05:08:23]: testbed dpkg architecture: amd64 116s autopkgtest [05:08:23]: testbed apt version: 2.7.12 116s autopkgtest [05:08:23]: test architecture: i386 116s autopkgtest [05:08:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 116s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 117s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 117s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 117s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3754 kB] 117s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 117s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [695 kB] 117s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [459 kB] 117s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 117s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 117s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 117s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 117s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4236 kB] 117s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1277 kB] 117s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 117s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 117s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 117s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 120s Fetched 11.3 MB in 2s (7208 kB/s) 120s Reading package lists... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 123s Calculating upgrade... 123s The following packages will be upgraded: 123s cloud-init fonts-ubuntu-console python3-markupsafe 123s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s Need to get 629 kB of archives. 123s After this operation, 11.3 kB disk space will be freed. 123s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 123s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 123s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 123s Preconfiguring packages ... 123s Fetched 629 kB in 0s (21.8 MB/s) 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 124s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 124s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 124s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 124s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 124s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 124s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 124s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 124s Setting up cloud-init (24.1.2-0ubuntu1) ... 125s Setting up python3-markupsafe (2.1.5-1build1) ... 126s Processing triggers for man-db (2.12.0-3) ... 126s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 128s sh: Attempting to set up Debian/Ubuntu apt sources automatically 128s sh: Distribution appears to be Ubuntu 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 130s eatmydata is already the newest version (131-1). 130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s dbus is already the newest version (1.14.10-4ubuntu1). 130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 130s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s rng-tools-debian is already the newest version (2.4). 131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 132s The following packages will be REMOVED: 132s cloud-init* python3-configobj* python3-debconf* 132s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 132s After this operation, 3256 kB disk space will be freed. 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 132s Removing cloud-init (24.1.2-0ubuntu1) ... 133s Removing python3-configobj (5.0.8-3) ... 133s Removing python3-debconf (1.5.86) ... 133s Processing triggers for man-db (2.12.0-3) ... 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 133s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 134s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 134s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 134s invoke-rc.d: policy-rc.d denied execution of try-restart. 134s Reading package lists... 134s Building dependency tree... 135s Reading state information... 135s linux-generic is already the newest version (6.8.0-11.11+1). 135s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 135s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 135s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 135s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 137s Reading package lists... 137s Reading package lists... 137s Building dependency tree... 137s Reading state information... 138s Calculating upgrade... 138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 139s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s autopkgtest [05:08:46]: rebooting testbed after setup commands that affected boot 155s autopkgtest [05:09:02]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 156s autopkgtest [05:09:03]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-structuralvariantannotation 157s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-structuralvariantannotation 1.18.0+ds-1 (dsc) [2600 B] 157s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-structuralvariantannotation 1.18.0+ds-1 (tar) [262 kB] 157s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-structuralvariantannotation 1.18.0+ds-1 (diff) [6836 B] 157s gpgv: Signature made Fri Dec 1 15:57:35 2023 UTC 157s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 157s gpgv: issuer "tillea@rki.de" 157s gpgv: Can't check signature: No public key 157s dpkg-source: warning: cannot verify inline signature for ./r-bioc-structuralvariantannotation_1.18.0+ds-1.dsc: no acceptable signature found 157s autopkgtest [05:09:04]: testing package r-bioc-structuralvariantannotation version 1.18.0+ds-1 158s autopkgtest [05:09:05]: build not needed 159s autopkgtest [05:09:06]: test pkg-r-autopkgtest: preparing testbed 164s Note, using file '/tmp/autopkgtest.GghTto/1-autopkgtest-satdep.dsc' to get the build dependencies 164s Reading package lists... 165s Building dependency tree... 165s Reading state information... 165s Starting pkgProblemResolver with broken count: 0 165s Starting 2 pkgProblemResolver with broken count: 0 165s Done 166s The following NEW packages will be installed: 166s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 166s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 166s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 166s g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 166s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 166s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 166s javascript-common libasan8 libatomic1 libblas-dev libblas3 libboost-dev 166s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 166s libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 166s libgfortran-13-dev libgfortran5 libgit2-1.7 libgomp1 libgraphite2-3 166s libharfbuzz0b libhttp-parser2.9 libhwasan0 libice6 libicu-dev libisl23 166s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 166s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-bootswatch libjs-d3 166s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 166s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 166s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 166s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 166s liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 166s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 166s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 166s libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 libreadline-dev 166s libsharpyuv0 libsm6 libssh2-1 libstdc++-13-dev libtcl8.6 libthai-data 166s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 166s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev 166s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 166s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 166s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 166s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 166s r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome 166s r-bioc-delayedarray r-bioc-ensembldb r-bioc-genomeinfodb 166s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 166s r-bioc-genomicranges r-bioc-ggbio r-bioc-graph r-bioc-iranges 166s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-organismdbi r-bioc-protgenerics 166s r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 166s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 166s r-bioc-structuralvariantannotation r-bioc-summarizedexperiment 166s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 166s r-cran-acepack r-cran-askpass r-cran-assertthat r-cran-backports 166s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 166s r-cran-bitops r-cran-blob r-cran-brew r-cran-brio r-cran-broom 166s r-cran-broom.helpers r-cran-bslib r-cran-cachem r-cran-callr 166s r-cran-cellranger r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr 166s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 166s r-cran-conflicted r-cran-cpp11 r-cran-crayon r-cran-credentials r-cran-curl 166s r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-desc 166s r-cran-devtools r-cran-dichromat r-cran-diffobj r-cran-digest r-cran-downlit 166s r-cran-dplyr r-cran-dtplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 166s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 166s r-cran-forcats r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 166s r-cran-futile.logger r-cran-futile.options r-cran-gargle r-cran-generics 166s r-cran-gert r-cran-ggally r-cran-ggplot2 r-cran-ggstats r-cran-gh 166s r-cran-gitcreds r-cran-glue r-cran-googledrive r-cran-googlesheets4 166s r-cran-gridextra r-cran-gtable r-cran-haven r-cran-highr r-cran-hmisc 166s r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets 166s r-cran-httpuv r-cran-httr r-cran-httr2 r-cran-ids r-cran-ini r-cran-interp 166s r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr 166s r-cran-labeling r-cran-labelled r-cran-lambda.r r-cran-later r-cran-lattice 166s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 166s r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix 166s r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-miniui 166s r-cran-modelr r-cran-munsell r-cran-nlme r-cran-nnet r-cran-openssl 166s r-cran-patchwork r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 166s r-cran-pkgdown r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 166s r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-profvis 166s r-cran-progress r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-ragg 166s r-cran-rappdirs r-cran-rcmdcheck r-cran-rcolorbrewer r-cran-rcpp 166s r-cran-rcppeigen r-cran-rcurl r-cran-readr r-cran-readxl r-cran-rematch 166s r-cran-rematch2 r-cran-remotes r-cran-reprex r-cran-reshape2 r-cran-restfulr 166s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-roxygen2 r-cran-rpart 166s r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-rversions 166s r-cran-rvest r-cran-sass r-cran-scales r-cran-selectr r-cran-sessioninfo 166s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 166s r-cran-survival r-cran-sys r-cran-systemfonts r-cran-testthat 166s r-cran-textshaping r-cran-tibble r-cran-tidyr r-cran-tidyselect 166s r-cran-tidyverse r-cran-timechange r-cran-tinytex r-cran-tzdb 166s r-cran-urlchecker r-cran-usethis r-cran-utf8 r-cran-uuid r-cran-vctrs 166s r-cran-viridis r-cran-viridislite r-cran-vroom r-cran-waldo r-cran-whisker 166s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xopen r-cran-xtable 166s r-cran-yaml r-cran-zip rpcsvc-proto unzip x11-common xdg-utils zip 166s zlib1g-dev 166s 0 upgraded, 372 newly installed, 0 to remove and 0 not upgraded. 166s Need to get 397 MB of archives. 166s After this operation, 1233 MB of additional disk space will be used. 166s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 166s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 166s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 166s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 166s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 166s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 166s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 166s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 166s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 166s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 166s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 166s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 166s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 166s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 166s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 166s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 166s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 166s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 166s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 166s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 166s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 166s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 166s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 166s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 166s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 166s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 166s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 166s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 166s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 166s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 166s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 166s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 166s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 166s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 166s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 166s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 166s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 166s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 166s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 166s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 166s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 166s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 166s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 166s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 166s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 166s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 167s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 167s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 167s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 167s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 167s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 167s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 167s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 167s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 167s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 167s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 167s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 167s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 167s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 167s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 167s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 167s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 167s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 167s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libhttp-parser2.9 amd64 2.9.4-6 [22.0 kB] 167s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libssh2-1 amd64 1.11.0-4 [138 kB] 167s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libgit2-1.7 amd64 1.7.2+ds-1ubuntu1 [528 kB] 167s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 167s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 167s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 167s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 167s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 167s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 167s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 167s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 167s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 167s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 167s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 167s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 167s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 167s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 167s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 167s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 167s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 167s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 167s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 167s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 167s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 167s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 167s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 167s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 167s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 167s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 167s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 167s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 167s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 167s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 167s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 167s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 167s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 167s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 167s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 167s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 167s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 167s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 167s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 167s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 167s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 167s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 167s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 167s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 167s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 167s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 167s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 167s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 167s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 167s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 167s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 167s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 167s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 167s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 167s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 167s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 167s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 167s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 167s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 167s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 167s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 167s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 167s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 167s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 167s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 167s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 168s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 168s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 168s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 168s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 168s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 168s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 168s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 168s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 168s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 168s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 168s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 168s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 168s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 168s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 168s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 168s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 168s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 168s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 168s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 168s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 168s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 168s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 168s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 168s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 168s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 168s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 168s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 168s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 168s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 168s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 168s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 168s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 168s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 168s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 168s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 168s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 168s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 168s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 168s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 168s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 168s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 168s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 168s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 168s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 168s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 168s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 168s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 168s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 168s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 168s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 168s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 168s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 168s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 168s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 168s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 168s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 168s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 168s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 168s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 169s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 169s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 169s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 169s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 169s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 169s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 169s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 169s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 169s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 169s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 169s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 169s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 169s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 169s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 169s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 169s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 169s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 169s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 169s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 169s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 169s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 169s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 169s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 169s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 169s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 169s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 169s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 169s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 169s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 169s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 169s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 169s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 169s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 169s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 169s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cluster amd64 2.1.6-1 [554 kB] 169s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 169s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rpart amd64 4.1.23-1 [661 kB] 169s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nnet amd64 7.3-19-2 [112 kB] 169s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-foreign amd64 0.8.86-1 [242 kB] 169s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 169s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-data.table amd64 1.14.10+dfsg-1 [1837 kB] 169s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 169s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 169s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 169s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 169s Get:237 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 169s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 169s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-backports amd64 1.4.1-1 [101 kB] 169s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-checkmate amd64 2.3.1-1 [713 kB] 169s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 169s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 169s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 169s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 169s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 169s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 169s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 169s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 169s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 169s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 169s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 169s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 169s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 169s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 169s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 169s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 169s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 169s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 169s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 169s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 169s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 169s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 169s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 169s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rstudioapi all 0.15.0-1 [277 kB] 169s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltable all 2.4.2-1 [381 kB] 169s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 169s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 169s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-chron amd64 2.3-61-2 [186 kB] 169s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 169s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-deldir amd64 2.0-4-1 [270 kB] 169s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppeigen amd64 0.3.3.9.4-1 [1189 kB] 169s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 169s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 169s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-acepack amd64 1.4.2-1 [61.3 kB] 169s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hmisc amd64 5.1-1-1 [3491 kB] 169s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 169s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 169s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 169s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 169s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 169s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 169s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 169s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 169s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 169s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 169s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 169s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 169s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 169s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 169s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 169s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 169s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-variantannotation amd64 1.48.1-1 [3527 kB] 169s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 169s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 169s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biovizbase amd64 1.50.0-1 [2665 kB] 169s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 170s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 170s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 170s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-graph amd64 1.80.0-1 [1289 kB] 170s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rbgl amd64 1.78.0+dfsg-1 [551 kB] 170s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-organismdbi all 1.44.0+dfsg-1 [456 kB] 170s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-broom all 1.0.5+dfsg-1 [1729 kB] 170s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-forcats all 1.0.0-1 [369 kB] 170s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-clipr all 0.8.0-1 [53.5 kB] 170s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] 170s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vroom amd64 1.6.5-1 [848 kB] 170s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-readr amd64 2.1.5-1 [766 kB] 170s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-haven amd64 2.5.4-1 [346 kB] 170s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labelled all 2.12.0-2 [312 kB] 170s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-broom.helpers all 1.14.0-2 [557 kB] 170s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-patchwork all 1.2.0-1 [3161 kB] 170s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggstats all 0.5.1-2 [839 kB] 170s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggally all 2.2.1-1 [2022 kB] 170s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ggbio all 1.50.0-1 [2939 kB] 170s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-assertthat all 0.2.1-2build1 [56.5 kB] 170s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-structuralvariantannotation all 1.18.0+ds-1 [413 kB] 170s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brew all 1.0-10-1 [77.7 kB] 170s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 170s Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 170s Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 170s Get:321 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 170s Get:322 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch all 2.0.0-1 [18.3 kB] 170s Get:323 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cellranger all 1.1.0-3 [102 kB] 170s Get:324 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-conflicted all 1.2.0-1.1 [60.8 kB] 170s Get:325 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-credentials all 2.0.1-1 [207 kB] 170s Get:326 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 170s Get:327 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-zip amd64 2.3.1-1 [123 kB] 170s Get:328 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gert amd64 2.0.1+dfsg-1 [234 kB] 170s Get:329 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gitcreds all 0.1.2-1 [93.5 kB] 170s Get:330 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr2 all 1.0.0-1 [553 kB] 170s Get:331 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ini all 0.3.1-2build1 [15.8 kB] 170s Get:332 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gh all 1.4.0-1 [108 kB] 170s Get:333 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 170s Get:334 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-whisker all 0.4.1-1 [62.7 kB] 170s Get:335 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-usethis all 2.2.2-1 [882 kB] 170s Get:336 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-miniui all 0.1.1.1-3build1 [36.1 kB] 170s Get:337 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 170s Get:338 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-downlit all 0.4.3-1 [125 kB] 170s Get:339 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-systemfonts amd64 1.0.5-1 [229 kB] 170s Get:340 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-textshaping amd64 0.3.7-2 [95.5 kB] 170s Get:341 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ragg amd64 1.2.7-1 [395 kB] 170s Get:342 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootswatch all 3.3.7+dfsg2-1.1 [133 kB] 170s Get:343 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgdown all 2.0.7-2 [837 kB] 170s Get:344 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 170s Get:345 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-profvis amd64 0.3.8+dfsg-1 [105 kB] 170s Get:346 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sessioninfo all 1.2.2-1 [268 kB] 170s Get:347 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xopen all 1.0.0+dfsg-1 [18.9 kB] 170s Get:348 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcmdcheck all 1.4.0-2 [206 kB] 170s Get:349 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-remotes all 2.4.2.1+dfsg-2 [411 kB] 170s Get:350 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-roxygen2 amd64 7.3.1-1 [712 kB] 170s Get:351 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rversions all 2.1.2-1 [59.4 kB] 170s Get:352 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 170s Get:353 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 170s Get:354 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 170s Get:355 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 170s Get:356 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 170s Get:357 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-urlchecker all 1.0.1-2 [34.0 kB] 170s Get:358 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-devtools all 2.4.5-1 [676 kB] 170s Get:359 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dtplyr all 1.3.1-1 [364 kB] 170s Get:360 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gargle all 1.5.2-1 [737 kB] 170s Get:361 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-uuid amd64 1.2-0-1 [47.6 kB] 170s Get:362 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-googledrive all 2.1.1-1 [1224 kB] 170s Get:363 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ids all 1.0.1-2 [124 kB] 170s Get:364 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-googlesheets4 all 1.1.1-1 [520 kB] 170s Get:365 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-timechange amd64 0.3.0-1 [178 kB] 170s Get:366 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lubridate amd64 1.9.3+dfsg-1 [1010 kB] 170s Get:367 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-modelr all 0.1.11-1 [195 kB] 170s Get:368 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-readxl amd64 1.4.3-1 [736 kB] 170s Get:369 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-reprex all 2.1.0-1 [465 kB] 170s Get:370 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-selectr all 0.4-2-2build1 [416 kB] 170s Get:371 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rvest all 1.0.3-1 [208 kB] 170s Get:372 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyverse all 2.0.0+dfsg-1 [84.5 kB] 171s Preconfiguring packages ... 171s Fetched 397 MB in 4s (95.2 MB/s) 171s Selecting previously unselected package libc-dev-bin. 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 171s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 171s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 171s Selecting previously unselected package linux-libc-dev:amd64. 171s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 171s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 171s Selecting previously unselected package libcrypt-dev:amd64. 171s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 171s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 171s Selecting previously unselected package libtirpc-dev:amd64. 171s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 171s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 171s Selecting previously unselected package libnsl-dev:amd64. 171s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 171s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 171s Selecting previously unselected package rpcsvc-proto. 171s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 171s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 171s Selecting previously unselected package libc6-dev:amd64. 171s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 171s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 172s Selecting previously unselected package libisl23:amd64. 172s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 172s Unpacking libisl23:amd64 (0.26-3) ... 172s Selecting previously unselected package libmpc3:amd64. 172s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 172s Unpacking libmpc3:amd64 (1.3.1-1) ... 172s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 172s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 172s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 172s Selecting previously unselected package cpp-13. 172s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 172s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 172s Selecting previously unselected package cpp-x86-64-linux-gnu. 172s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 172s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 172s Selecting previously unselected package cpp. 172s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 172s Unpacking cpp (4:13.2.0-7ubuntu1) ... 172s Selecting previously unselected package libcc1-0:amd64. 172s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 172s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libgomp1:amd64. 172s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 172s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libitm1:amd64. 172s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 172s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libatomic1:amd64. 172s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 172s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libasan8:amd64. 172s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 172s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package liblsan0:amd64. 172s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 172s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libtsan2:amd64. 172s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 172s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libubsan1:amd64. 172s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 172s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libhwasan0:amd64. 172s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 172s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libquadmath0:amd64. 172s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 172s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libgcc-13-dev:amd64. 172s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 172s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 173s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 173s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 173s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 173s Selecting previously unselected package gcc-13. 173s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 173s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 173s Selecting previously unselected package gcc-x86-64-linux-gnu. 173s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 173s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 173s Selecting previously unselected package gcc. 173s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 173s Unpacking gcc (4:13.2.0-7ubuntu1) ... 173s Selecting previously unselected package libstdc++-13-dev:amd64. 173s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 173s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 173s Selecting previously unselected package g++-13-x86-64-linux-gnu. 173s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 173s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 173s Selecting previously unselected package g++-13. 173s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 173s Unpacking g++-13 (13.2.0-17ubuntu2) ... 173s Selecting previously unselected package g++-x86-64-linux-gnu. 173s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 173s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 174s Selecting previously unselected package g++. 174s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 174s Unpacking g++ (4:13.2.0-7ubuntu1) ... 174s Selecting previously unselected package build-essential. 174s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 174s Unpacking build-essential (12.10ubuntu1) ... 174s Selecting previously unselected package dctrl-tools. 174s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 174s Unpacking dctrl-tools (2.24-3build2) ... 174s Selecting previously unselected package fonts-dejavu-mono. 174s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 174s Unpacking fonts-dejavu-mono (2.37-8) ... 174s Selecting previously unselected package fonts-dejavu-core. 174s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 174s Unpacking fonts-dejavu-core (2.37-8) ... 174s Selecting previously unselected package fontconfig-config. 174s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 174s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 174s Selecting previously unselected package libfontconfig1:amd64. 174s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 174s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 174s Selecting previously unselected package fontconfig. 174s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 174s Unpacking fontconfig (2.15.0-1ubuntu1) ... 174s Selecting previously unselected package fonts-font-awesome. 174s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 174s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 174s Selecting previously unselected package fonts-glyphicons-halflings. 174s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 174s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 174s Selecting previously unselected package fonts-mathjax. 174s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 174s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 174s Selecting previously unselected package libgfortran5:amd64. 174s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 174s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 174s Selecting previously unselected package libgfortran-13-dev:amd64. 174s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 174s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 174s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 174s Preparing to unpack .../045-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 174s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 175s Selecting previously unselected package gfortran-13. 175s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 175s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 175s Selecting previously unselected package gfortran-x86-64-linux-gnu. 175s Preparing to unpack .../047-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 175s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 175s Selecting previously unselected package gfortran. 175s Preparing to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 175s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 175s Selecting previously unselected package icu-devtools. 175s Preparing to unpack .../049-icu-devtools_74.2-1ubuntu1_amd64.deb ... 175s Unpacking icu-devtools (74.2-1ubuntu1) ... 175s Selecting previously unselected package javascript-common. 175s Preparing to unpack .../050-javascript-common_11+nmu1_all.deb ... 175s Unpacking javascript-common (11+nmu1) ... 175s Selecting previously unselected package libblas3:amd64. 175s Preparing to unpack .../051-libblas3_3.12.0-3_amd64.deb ... 175s Unpacking libblas3:amd64 (3.12.0-3) ... 175s Selecting previously unselected package libblas-dev:amd64. 175s Preparing to unpack .../052-libblas-dev_3.12.0-3_amd64.deb ... 175s Unpacking libblas-dev:amd64 (3.12.0-3) ... 175s Selecting previously unselected package libboost1.83-dev:amd64. 175s Preparing to unpack .../053-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 175s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 177s Selecting previously unselected package libboost-dev:amd64. 177s Preparing to unpack .../054-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 177s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ... 177s Selecting previously unselected package libbz2-dev:amd64. 178s Preparing to unpack .../055-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 178s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 178s Selecting previously unselected package libpixman-1-0:amd64. 178s Preparing to unpack .../056-libpixman-1-0_0.42.2-1_amd64.deb ... 178s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 178s Selecting previously unselected package libxcb-render0:amd64. 178s Preparing to unpack .../057-libxcb-render0_1.15-1_amd64.deb ... 178s Unpacking libxcb-render0:amd64 (1.15-1) ... 178s Selecting previously unselected package libxcb-shm0:amd64. 178s Preparing to unpack .../058-libxcb-shm0_1.15-1_amd64.deb ... 178s Unpacking libxcb-shm0:amd64 (1.15-1) ... 178s Selecting previously unselected package libxrender1:amd64. 178s Preparing to unpack .../059-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 178s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 178s Selecting previously unselected package libcairo2:amd64. 178s Preparing to unpack .../060-libcairo2_1.18.0-1_amd64.deb ... 178s Unpacking libcairo2:amd64 (1.18.0-1) ... 178s Selecting previously unselected package libdatrie1:amd64. 178s Preparing to unpack .../061-libdatrie1_0.2.13-3_amd64.deb ... 178s Unpacking libdatrie1:amd64 (0.2.13-3) ... 178s Selecting previously unselected package libdeflate0:amd64. 178s Preparing to unpack .../062-libdeflate0_1.19-1_amd64.deb ... 178s Unpacking libdeflate0:amd64 (1.19-1) ... 178s Selecting previously unselected package libhttp-parser2.9:amd64. 178s Preparing to unpack .../063-libhttp-parser2.9_2.9.4-6_amd64.deb ... 178s Unpacking libhttp-parser2.9:amd64 (2.9.4-6) ... 178s Selecting previously unselected package libssh2-1:amd64. 178s Preparing to unpack .../064-libssh2-1_1.11.0-4_amd64.deb ... 178s Unpacking libssh2-1:amd64 (1.11.0-4) ... 178s Selecting previously unselected package libgit2-1.7:amd64. 178s Preparing to unpack .../065-libgit2-1.7_1.7.2+ds-1ubuntu1_amd64.deb ... 178s Unpacking libgit2-1.7:amd64 (1.7.2+ds-1ubuntu1) ... 178s Selecting previously unselected package libgraphite2-3:amd64. 178s Preparing to unpack .../066-libgraphite2-3_1.3.14-2_amd64.deb ... 178s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 178s Selecting previously unselected package libharfbuzz0b:amd64. 178s Preparing to unpack .../067-libharfbuzz0b_8.3.0-2_amd64.deb ... 178s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 178s Selecting previously unselected package x11-common. 178s Preparing to unpack .../068-x11-common_1%3a7.7+23ubuntu2_all.deb ... 178s Unpacking x11-common (1:7.7+23ubuntu2) ... 178s Selecting previously unselected package libice6:amd64. 178s Preparing to unpack .../069-libice6_2%3a1.0.10-1build2_amd64.deb ... 178s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 178s Selecting previously unselected package libicu-dev:amd64. 178s Preparing to unpack .../070-libicu-dev_74.2-1ubuntu1_amd64.deb ... 178s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 178s Selecting previously unselected package libjpeg-turbo8:amd64. 178s Preparing to unpack .../071-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 178s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 178s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 178s Preparing to unpack .../072-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 178s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 178s Selecting previously unselected package libjpeg8:amd64. 178s Preparing to unpack .../073-libjpeg8_8c-2ubuntu11_amd64.deb ... 178s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 178s Selecting previously unselected package libjpeg8-dev:amd64. 178s Preparing to unpack .../074-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 178s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 178s Selecting previously unselected package libjpeg-dev:amd64. 178s Preparing to unpack .../075-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 178s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 178s Selecting previously unselected package libjs-bootstrap. 178s Preparing to unpack .../076-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 178s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 178s Selecting previously unselected package libjs-popper.js. 179s Preparing to unpack .../077-libjs-popper.js_1.16.1+ds-6_all.deb ... 179s Unpacking libjs-popper.js (1.16.1+ds-6) ... 179s Selecting previously unselected package libjs-bootstrap4. 179s Preparing to unpack .../078-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 179s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 179s Selecting previously unselected package libjs-d3. 179s Preparing to unpack .../079-libjs-d3_3.5.17-4_all.deb ... 179s Unpacking libjs-d3 (3.5.17-4) ... 179s Selecting previously unselected package libjs-es5-shim. 179s Preparing to unpack .../080-libjs-es5-shim_4.6.7-2_all.deb ... 179s Unpacking libjs-es5-shim (4.6.7-2) ... 179s Selecting previously unselected package libjs-highlight.js. 179s Preparing to unpack .../081-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 179s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 179s Selecting previously unselected package libjs-jquery. 179s Preparing to unpack .../082-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 179s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 179s Selecting previously unselected package libjs-jquery-datatables. 179s Preparing to unpack .../083-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 179s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 179s Selecting previously unselected package libjs-sifter.js. 179s Preparing to unpack .../084-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 179s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 179s Selecting previously unselected package libjs-microplugin.js. 179s Preparing to unpack .../085-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 179s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 179s Selecting previously unselected package libjs-jquery-selectize.js. 179s Preparing to unpack .../086-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 179s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 179s Selecting previously unselected package libjs-jquery-ui. 179s Preparing to unpack .../087-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 179s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 179s Selecting previously unselected package libjs-json. 179s Preparing to unpack .../088-libjs-json_0~20221030+~1.0.8-1_all.deb ... 179s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 179s Selecting previously unselected package libjs-prettify. 179s Preparing to unpack .../089-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 179s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 179s Selecting previously unselected package liblapack3:amd64. 179s Preparing to unpack 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libthai-data (0.1.29-2) ... 179s Selecting previously unselected package libthai0:amd64. 179s Preparing to unpack .../096-libthai0_0.1.29-2_amd64.deb ... 179s Unpacking libthai0:amd64 (0.1.29-2) ... 179s Selecting previously unselected package libpango-1.0-0:amd64. 179s Preparing to unpack .../097-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 179s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 180s Selecting previously unselected package libpangoft2-1.0-0:amd64. 180s Preparing to unpack .../098-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 180s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 180s Selecting previously unselected package libpangocairo-1.0-0:amd64. 180s Preparing to unpack .../099-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 180s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 180s Selecting previously unselected package libpaper1:amd64. 180s Preparing to unpack .../100-libpaper1_1.1.29_amd64.deb ... 180s Unpacking libpaper1:amd64 (1.1.29) ... 180s Selecting previously unselected package libpaper-utils. 180s Preparing to unpack .../101-libpaper-utils_1.1.29_amd64.deb ... 180s Unpacking libpaper-utils (1.1.29) ... 180s Selecting previously unselected package libpcre2-16-0:amd64. 180s Preparing to unpack .../102-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 180s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 180s Selecting previously unselected package libpcre2-32-0:amd64. 180s Preparing to unpack .../103-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 180s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 180s Selecting previously unselected package libpcre2-posix3:amd64. 180s Preparing to unpack .../104-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 180s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 180s Selecting previously unselected package libpcre2-dev:amd64. 180s Preparing to unpack .../105-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 180s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 180s Selecting previously unselected package libpkgconf3:amd64. 180s Preparing to unpack .../106-libpkgconf3_1.8.1-2_amd64.deb ... 180s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 180s Selecting previously unselected package zlib1g-dev:amd64. 180s Preparing to unpack .../107-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 180s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 180s Selecting previously unselected package libpng-dev:amd64. 180s Preparing to unpack .../108-libpng-dev_1.6.43-1_amd64.deb ... 180s Unpacking libpng-dev:amd64 (1.6.43-1) ... 180s Selecting previously unselected package libreadline-dev:amd64. 180s Preparing to unpack .../109-libreadline-dev_8.2-3_amd64.deb ... 180s Unpacking libreadline-dev:amd64 (8.2-3) ... 180s Selecting previously unselected package libsharpyuv0:amd64. 180s Preparing to unpack .../110-libsharpyuv0_1.3.2-0.4_amd64.deb ... 180s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 180s Selecting previously unselected package libsm6:amd64. 180s Preparing to unpack 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(2.3.6-1) ... 180s Selecting previously unselected package libxss1:amd64. 180s Preparing to unpack .../117-libxss1_1%3a1.2.3-1build2_amd64.deb ... 180s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 180s Selecting previously unselected package libtk8.6:amd64. 180s Preparing to unpack .../118-libtk8.6_8.6.13-2_amd64.deb ... 180s Unpacking libtk8.6:amd64 (8.6.13-2) ... 180s Selecting previously unselected package libxt6:amd64. 180s Preparing to unpack .../119-libxt6_1%3a1.2.1-1.1_amd64.deb ... 180s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 180s Selecting previously unselected package node-bootstrap-sass. 180s Preparing to unpack .../120-node-bootstrap-sass_3.4.3-2_all.deb ... 180s Unpacking node-bootstrap-sass (3.4.3-2) ... 180s Selecting previously unselected package node-html5shiv. 180s Preparing to unpack .../121-node-html5shiv_3.7.3+dfsg-5_all.deb ... 180s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 180s Selecting previously unselected package node-normalize.css. 180s Preparing to unpack .../122-node-normalize.css_8.0.1-5_all.deb ... 180s Unpacking node-normalize.css (8.0.1-5) ... 180s Selecting previously unselected package pandoc-data. 180s Preparing to unpack .../123-pandoc-data_3.1.3-1_all.deb ... 180s Unpacking pandoc-data (3.1.3-1) ... 180s Selecting previously unselected package pandoc. 180s Preparing to unpack .../124-pandoc_3.1.3+ds-2_amd64.deb ... 180s Unpacking pandoc (3.1.3+ds-2) ... 181s Selecting previously unselected package pkgconf-bin. 181s Preparing to unpack .../125-pkgconf-bin_1.8.1-2_amd64.deb ... 181s Unpacking pkgconf-bin (1.8.1-2) ... 181s Selecting previously unselected package pkgconf:amd64. 181s Preparing to unpack .../126-pkgconf_1.8.1-2_amd64.deb ... 181s Unpacking pkgconf:amd64 (1.8.1-2) ... 181s Selecting previously unselected package pkg-config:amd64. 181s Preparing to unpack .../127-pkg-config_1.8.1-2_amd64.deb ... 181s Unpacking pkg-config:amd64 (1.8.1-2) ... 181s Selecting previously unselected package zip. 181s Preparing to unpack .../128-zip_3.0-13_amd64.deb ... 181s Unpacking zip (3.0-13) ... 181s Selecting previously unselected package unzip. 181s Preparing to unpack .../129-unzip_6.0-28ubuntu3_amd64.deb ... 181s Unpacking unzip (6.0-28ubuntu3) ... 181s Selecting previously unselected package xdg-utils. 181s Preparing to unpack .../130-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 181s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 181s Selecting previously unselected package r-base-core. 181s Preparing to unpack .../131-r-base-core_4.3.2-1build1_amd64.deb ... 181s Unpacking r-base-core (4.3.2-1build1) ... 182s Selecting previously unselected package liblzma-dev:amd64. 182s Preparing to unpack .../132-liblzma-dev_5.4.5-0.3_amd64.deb ... 182s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 182s Selecting previously unselected package r-base-dev. 182s Preparing to unpack .../133-r-base-dev_4.3.2-1build1_all.deb ... 182s Unpacking r-base-dev (4.3.2-1build1) ... 182s Selecting previously unselected package pkg-r-autopkgtest. 182s Preparing to unpack .../134-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 182s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 182s Selecting previously unselected package r-bioc-biocgenerics. 182s Preparing to unpack .../135-r-bioc-biocgenerics_0.48.1-2_all.deb ... 182s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 182s Selecting previously unselected package r-bioc-biobase. 182s Preparing to unpack .../136-r-bioc-biobase_2.62.0-1_amd64.deb ... 182s Unpacking r-bioc-biobase (2.62.0-1) ... 182s Selecting previously unselected package r-bioc-s4vectors. 182s Preparing to unpack .../137-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 182s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 182s Selecting previously unselected package r-bioc-iranges. 182s Preparing to unpack .../138-r-bioc-iranges_2.36.0-1_amd64.deb ... 182s Unpacking r-bioc-iranges (2.36.0-1) ... 182s Selecting previously unselected package r-cran-dbi. 182s Preparing to unpack .../139-r-cran-dbi_1.2.2-1_all.deb ... 182s Unpacking r-cran-dbi (1.2.2-1) ... 182s Selecting previously unselected package r-cran-bit. 182s Preparing to unpack .../140-r-cran-bit_4.0.5-1_amd64.deb ... 182s Unpacking r-cran-bit (4.0.5-1) ... 182s Selecting previously unselected package r-cran-bit64. 182s Preparing to unpack .../141-r-cran-bit64_4.0.5-1_amd64.deb ... 182s Unpacking r-cran-bit64 (4.0.5-1) ... 182s Selecting previously unselected package r-cran-rlang. 182s Preparing to unpack .../142-r-cran-rlang_1.1.3-1_amd64.deb ... 182s Unpacking r-cran-rlang (1.1.3-1) ... 182s Selecting previously unselected package r-cran-cli. 182s Preparing to unpack .../143-r-cran-cli_3.6.2-1_amd64.deb ... 182s Unpacking r-cran-cli (3.6.2-1) ... 182s Selecting previously unselected package r-cran-glue. 182s Preparing to unpack .../144-r-cran-glue_1.7.0-1_amd64.deb ... 182s Unpacking r-cran-glue (1.7.0-1) ... 182s Selecting previously unselected package r-cran-lifecycle. 182s Preparing to unpack .../145-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 182s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 182s Selecting previously unselected package r-cran-vctrs. 182s Preparing to unpack .../146-r-cran-vctrs_0.6.5-1_amd64.deb ... 182s Unpacking r-cran-vctrs (0.6.5-1) ... 183s Selecting previously unselected package r-cran-blob. 183s Preparing to unpack .../147-r-cran-blob_1.2.4-1_all.deb ... 183s Unpacking r-cran-blob (1.2.4-1) ... 183s Selecting previously unselected package r-cran-fastmap. 183s Preparing to unpack .../148-r-cran-fastmap_1.1.1-1_amd64.deb ... 183s Unpacking r-cran-fastmap (1.1.1-1) ... 183s Selecting previously unselected package r-cran-cachem. 183s Preparing to unpack .../149-r-cran-cachem_1.0.8-1_amd64.deb ... 183s Unpacking r-cran-cachem (1.0.8-1) ... 183s Selecting previously unselected package r-cran-memoise. 183s Preparing to unpack .../150-r-cran-memoise_2.0.1-1_all.deb ... 183s Unpacking r-cran-memoise (2.0.1-1) ... 183s Selecting previously unselected package r-cran-pkgconfig. 183s Preparing to unpack .../151-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 183s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 183s Selecting previously unselected package r-cran-plogr. 183s Preparing to unpack .../152-r-cran-plogr_0.2.0-3build1_all.deb ... 183s Unpacking r-cran-plogr (0.2.0-3build1) ... 183s Selecting previously unselected package r-cran-cpp11. 183s Preparing to unpack .../153-r-cran-cpp11_0.4.7-1_all.deb ... 183s Unpacking r-cran-cpp11 (0.4.7-1) ... 183s Selecting previously unselected package r-cran-rsqlite. 183s Preparing to unpack .../154-r-cran-rsqlite_2.3.4-1_amd64.deb ... 183s Unpacking r-cran-rsqlite (2.3.4-1) ... 183s Selecting previously unselected package r-cran-curl. 183s Preparing to unpack .../155-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 183s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 183s Selecting previously unselected package r-cran-jsonlite. 183s Preparing to unpack .../156-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 183s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 183s Selecting previously unselected package r-cran-mime. 183s Preparing to unpack .../157-r-cran-mime_0.12-1_amd64.deb ... 183s Unpacking r-cran-mime (0.12-1) ... 183s Selecting previously unselected package r-cran-sys. 183s Preparing to unpack .../158-r-cran-sys_3.4.2-1_amd64.deb ... 183s Unpacking r-cran-sys (3.4.2-1) ... 183s Selecting previously unselected package r-cran-askpass. 183s Preparing to unpack .../159-r-cran-askpass_1.2.0-1_amd64.deb ... 183s Unpacking r-cran-askpass (1.2.0-1) ... 183s Selecting previously unselected package r-cran-openssl. 183s Preparing to unpack .../160-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 183s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 183s Selecting previously unselected package r-cran-r6. 183s Preparing to unpack .../161-r-cran-r6_2.5.1-1_all.deb ... 183s Unpacking r-cran-r6 (2.5.1-1) ... 183s Selecting previously unselected package r-cran-httr. 183s Preparing to unpack .../162-r-cran-httr_1.4.7+dfsg-1_all.deb ... 183s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 183s Selecting previously unselected package r-cran-png. 183s Preparing to unpack .../163-r-cran-png_0.1-8-1_amd64.deb ... 183s Unpacking r-cran-png (0.1-8-1) ... 183s Selecting previously unselected package r-bioc-zlibbioc. 183s Preparing to unpack .../164-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 183s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 183s Selecting previously unselected package r-bioc-xvector. 183s Preparing to unpack .../165-r-bioc-xvector_0.42.0-1_amd64.deb ... 183s Unpacking r-bioc-xvector (0.42.0-1) ... 183s Selecting previously unselected package r-cran-bitops. 183s Preparing to unpack .../166-r-cran-bitops_1.0-7-1_amd64.deb ... 183s Unpacking r-cran-bitops (1.0-7-1) ... 183s Selecting previously unselected package r-cran-rcurl. 183s Preparing to unpack .../167-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 183s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 183s Selecting previously unselected package r-bioc-genomeinfodbdata. 183s Preparing to unpack .../168-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 183s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 183s Selecting previously unselected package r-bioc-genomeinfodb. 183s Preparing to unpack .../169-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 183s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 183s Selecting previously unselected package r-cran-crayon. 183s Preparing to unpack .../170-r-cran-crayon_1.5.2-1_all.deb ... 183s Unpacking r-cran-crayon (1.5.2-1) ... 183s Selecting previously unselected package r-bioc-biostrings. 183s Preparing to unpack .../171-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 183s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 184s Selecting previously unselected package r-bioc-keggrest. 184s Preparing to unpack .../172-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 184s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 184s Selecting previously unselected package r-bioc-annotationdbi. 184s Preparing to unpack .../173-r-bioc-annotationdbi_1.64.1-1_all.deb ... 184s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 184s Selecting previously unselected package r-bioc-genomicranges. 184s Preparing to unpack .../174-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 184s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 184s Selecting previously unselected package r-cran-lazyeval. 184s Preparing to unpack .../175-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 184s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 184s Selecting previously unselected package r-bioc-annotationfilter. 184s Preparing to unpack .../176-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 184s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 184s Selecting previously unselected package r-cran-generics. 184s Preparing to unpack .../177-r-cran-generics_0.1.3-1_all.deb ... 184s Unpacking r-cran-generics (0.1.3-1) ... 184s Selecting previously unselected package r-cran-magrittr. 184s Preparing to unpack .../178-r-cran-magrittr_2.0.3-1_amd64.deb ... 184s Unpacking r-cran-magrittr (2.0.3-1) ... 184s Selecting previously unselected package r-cran-fansi. 184s Preparing to unpack .../179-r-cran-fansi_1.0.5-1_amd64.deb ... 184s Unpacking r-cran-fansi (1.0.5-1) ... 184s Selecting previously unselected package r-cran-utf8. 184s Preparing to unpack .../180-r-cran-utf8_1.2.4-1_amd64.deb ... 184s Unpacking r-cran-utf8 (1.2.4-1) ... 184s Selecting previously unselected package r-cran-pillar. 184s Preparing to unpack .../181-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 184s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 184s Selecting previously unselected package r-cran-tibble. 184s Preparing to unpack .../182-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 184s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 184s Selecting previously unselected package r-cran-withr. 184s Preparing to unpack .../183-r-cran-withr_2.5.0-1_all.deb ... 184s Unpacking r-cran-withr (2.5.0-1) ... 184s Selecting previously unselected package r-cran-tidyselect. 184s Preparing to unpack .../184-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 184s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 184s Selecting previously unselected package r-cran-dplyr. 184s Preparing to unpack .../185-r-cran-dplyr_1.1.4-1_amd64.deb ... 184s Unpacking r-cran-dplyr (1.1.4-1) ... 184s Selecting previously unselected package r-cran-purrr. 184s Preparing to unpack .../186-r-cran-purrr_1.0.2-1_amd64.deb ... 184s Unpacking r-cran-purrr (1.0.2-1) ... 184s Selecting previously unselected package r-cran-stringi. 184s Preparing to unpack .../187-r-cran-stringi_1.8.3-1_amd64.deb ... 184s Unpacking r-cran-stringi (1.8.3-1) ... 184s Selecting previously unselected package r-cran-stringr. 184s Preparing to unpack .../188-r-cran-stringr_1.5.1-1_all.deb ... 184s Unpacking r-cran-stringr (1.5.1-1) ... 184s Selecting previously unselected package r-cran-tidyr. 184s Preparing to unpack .../189-r-cran-tidyr_1.3.1-1_amd64.deb ... 184s Unpacking r-cran-tidyr (1.3.1-1) ... 185s Selecting previously unselected package r-cran-dbplyr. 185s Preparing to unpack .../190-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 185s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 185s Selecting previously unselected package r-cran-filelock. 185s Preparing to unpack .../191-r-cran-filelock_1.0.3-1_amd64.deb ... 185s Unpacking r-cran-filelock (1.0.3-1) ... 185s Selecting previously unselected package r-bioc-biocfilecache. 185s Preparing to unpack .../192-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 185s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 185s Selecting previously unselected package r-bioc-biocio. 185s Preparing to unpack .../193-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 185s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 185s Selecting previously unselected package r-cran-formatr. 185s Preparing to unpack .../194-r-cran-formatr_1.14-1_all.deb ... 185s Unpacking r-cran-formatr (1.14-1) ... 185s Selecting previously unselected package r-cran-lambda.r. 185s Preparing to unpack .../195-r-cran-lambda.r_1.2.4-2build1_all.deb ... 185s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 185s Selecting previously unselected package r-cran-futile.options. 185s Preparing to unpack .../196-r-cran-futile.options_1.0.1-3build1_all.deb ... 185s Unpacking r-cran-futile.options (1.0.1-3build1) ... 185s Selecting previously unselected package r-cran-futile.logger. 185s Preparing to unpack .../197-r-cran-futile.logger_1.4.3-4build1_all.deb ... 185s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 185s Selecting previously unselected package r-cran-snow. 185s Preparing to unpack .../198-r-cran-snow_1%3a0.4.4-2_all.deb ... 185s Unpacking r-cran-snow (1:0.4.4-2) ... 185s Selecting previously unselected package r-cran-codetools. 185s Preparing to unpack .../199-r-cran-codetools_0.2-19-1_all.deb ... 185s Unpacking r-cran-codetools (0.2-19-1) ... 185s Selecting previously unselected package r-cran-bh. 185s Preparing to unpack .../200-r-cran-bh_1.84.0-1_all.deb ... 185s Unpacking r-cran-bh (1.84.0-1) ... 185s Selecting previously unselected package r-bioc-biocparallel. 185s Preparing to unpack .../201-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 185s Unpacking r-bioc-biocparallel (1.36.0-1) ... 185s Selecting previously unselected package r-cran-xml. 185s Preparing to unpack .../202-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 185s Unpacking r-cran-xml (3.99-0.16.1-1) ... 185s Selecting previously unselected package r-cran-hms. 185s Preparing to unpack .../203-r-cran-hms_1.1.3-1_all.deb ... 185s Unpacking r-cran-hms (1.1.3-1) ... 185s Selecting previously unselected package r-cran-prettyunits. 185s Preparing to unpack .../204-r-cran-prettyunits_1.2.0-1_all.deb ... 185s Unpacking r-cran-prettyunits (1.2.0-1) ... 185s Selecting previously unselected package r-cran-progress. 185s Preparing to unpack .../205-r-cran-progress_1.2.3-1_all.deb ... 185s Unpacking r-cran-progress (1.2.3-1) ... 185s Selecting previously unselected package r-cran-digest. 185s Preparing to unpack .../206-r-cran-digest_0.6.34-1_amd64.deb ... 185s Unpacking r-cran-digest (0.6.34-1) ... 185s Selecting previously unselected package r-cran-rappdirs. 185s Preparing to unpack .../207-r-cran-rappdirs_0.3.3-1_amd64.deb ... 185s Unpacking r-cran-rappdirs (0.3.3-1) ... 185s Selecting previously unselected package r-cran-xml2. 185s Preparing to unpack .../208-r-cran-xml2_1.3.6-1_amd64.deb ... 185s Unpacking r-cran-xml2 (1.3.6-1) ... 185s Selecting previously unselected package r-bioc-biomart. 185s Preparing to unpack .../209-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 185s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 185s Selecting previously unselected package r-cran-farver. 185s Preparing to unpack .../210-r-cran-farver_2.1.1-1_amd64.deb ... 185s Unpacking r-cran-farver (2.1.1-1) ... 185s Selecting previously unselected package r-cran-labeling. 185s Preparing to unpack .../211-r-cran-labeling_0.4.3-1_all.deb ... 185s Unpacking r-cran-labeling (0.4.3-1) ... 185s Selecting previously unselected package r-cran-colorspace. 185s Preparing to unpack .../212-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 185s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 186s Selecting previously unselected package r-cran-munsell. 186s Preparing to unpack .../213-r-cran-munsell_0.5.0-2build1_all.deb ... 186s Unpacking r-cran-munsell (0.5.0-2build1) ... 186s Selecting previously unselected package r-cran-rcolorbrewer. 186s Preparing to unpack .../214-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 186s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 186s Selecting previously unselected package r-cran-viridislite. 186s Preparing to unpack .../215-r-cran-viridislite_0.4.2-2_all.deb ... 186s Unpacking r-cran-viridislite (0.4.2-2) ... 186s Selecting previously unselected package r-cran-scales. 186s Preparing to unpack .../216-r-cran-scales_1.3.0-1_all.deb ... 186s Unpacking r-cran-scales (1.3.0-1) ... 186s Selecting previously unselected package r-cran-gtable. 186s Preparing to unpack .../217-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 186s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 186s Selecting previously unselected package r-cran-isoband. 186s Preparing to unpack .../218-r-cran-isoband_0.2.7-1_amd64.deb ... 186s Unpacking r-cran-isoband (0.2.7-1) ... 186s Selecting previously unselected package r-cran-mass. 186s Preparing to unpack .../219-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 186s Unpacking r-cran-mass (7.3-60.0.1-1) ... 186s Selecting previously unselected package r-cran-lattice. 186s Preparing to unpack .../220-r-cran-lattice_0.22-5-1_amd64.deb ... 186s Unpacking r-cran-lattice (0.22-5-1) ... 186s Selecting previously unselected package r-cran-nlme. 186s Preparing to unpack .../221-r-cran-nlme_3.1.164-1_amd64.deb ... 186s Unpacking r-cran-nlme (3.1.164-1) ... 186s Selecting previously unselected package r-cran-matrix. 186s Preparing to unpack .../222-r-cran-matrix_1.6-5-1_amd64.deb ... 186s Unpacking r-cran-matrix (1.6-5-1) ... 186s Selecting previously unselected package r-cran-mgcv. 186s Preparing to unpack .../223-r-cran-mgcv_1.9-1-1_amd64.deb ... 186s Unpacking r-cran-mgcv (1.9-1-1) ... 186s Selecting previously unselected package r-cran-ggplot2. 186s Preparing to unpack .../224-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 186s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 186s Selecting previously unselected package r-cran-cluster. 186s Preparing to unpack .../225-r-cran-cluster_2.1.6-1_amd64.deb ... 186s Unpacking r-cran-cluster (2.1.6-1) ... 186s Selecting previously unselected package r-cran-survival. 186s Preparing to unpack .../226-r-cran-survival_3.5-8-1_amd64.deb ... 186s Unpacking r-cran-survival (3.5-8-1) ... 186s Selecting previously unselected package r-cran-rpart. 186s Preparing to unpack .../227-r-cran-rpart_4.1.23-1_amd64.deb ... 186s Unpacking r-cran-rpart (4.1.23-1) ... 186s Selecting previously unselected package r-cran-nnet. 186s Preparing to unpack .../228-r-cran-nnet_7.3-19-2_amd64.deb ... 186s Unpacking r-cran-nnet (7.3-19-2) ... 186s Selecting previously unselected package r-cran-foreign. 186s Preparing to unpack .../229-r-cran-foreign_0.8.86-1_amd64.deb ... 186s Unpacking r-cran-foreign (0.8.86-1) ... 186s Selecting previously unselected package r-cran-gridextra. 186s Preparing to unpack .../230-r-cran-gridextra_2.3-3build1_all.deb ... 186s Unpacking r-cran-gridextra (2.3-3build1) ... 187s Selecting previously unselected package r-cran-data.table. 187s Preparing to unpack .../231-r-cran-data.table_1.14.10+dfsg-1_amd64.deb ... 187s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 187s Selecting previously unselected package r-cran-evaluate. 187s Preparing to unpack .../232-r-cran-evaluate_0.23-1_all.deb ... 187s Unpacking r-cran-evaluate (0.23-1) ... 187s Selecting previously unselected package r-cran-xfun. 187s Preparing to unpack .../233-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 187s Unpacking r-cran-xfun (0.41+dfsg-1) ... 187s Selecting previously unselected package r-cran-highr. 187s Preparing to unpack .../234-r-cran-highr_0.10+dfsg-1_all.deb ... 187s Unpacking r-cran-highr (0.10+dfsg-1) ... 187s Selecting previously unselected package r-cran-yaml. 187s Preparing to unpack .../235-r-cran-yaml_2.3.8-1_amd64.deb ... 187s Unpacking r-cran-yaml (2.3.8-1) ... 187s Selecting previously unselected package libjs-mathjax. 187s Preparing to unpack .../236-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 187s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 188s Selecting previously unselected package r-cran-knitr. 188s Preparing to unpack .../237-r-cran-knitr_1.45+dfsg-1_all.deb ... 188s Unpacking r-cran-knitr (1.45+dfsg-1) ... 188s Selecting previously unselected package r-cran-backports. 188s Preparing to unpack .../238-r-cran-backports_1.4.1-1_amd64.deb ... 188s Unpacking r-cran-backports (1.4.1-1) ... 188s Selecting previously unselected package r-cran-checkmate. 188s Preparing to unpack .../239-r-cran-checkmate_2.3.1-1_amd64.deb ... 188s Unpacking r-cran-checkmate (2.3.1-1) ... 188s Selecting previously unselected package r-cran-base64enc. 188s Preparing to unpack .../240-r-cran-base64enc_0.1-3-3_amd64.deb ... 188s Unpacking r-cran-base64enc (0.1-3-3) ... 188s Selecting previously unselected package r-cran-ellipsis. 188s Preparing to unpack .../241-r-cran-ellipsis_0.3.2-2_amd64.deb ... 188s Unpacking r-cran-ellipsis (0.3.2-2) ... 188s Selecting previously unselected package r-cran-htmltools. 188s Preparing to unpack .../242-r-cran-htmltools_0.5.7-1_amd64.deb ... 188s Unpacking r-cran-htmltools (0.5.7-1) ... 188s Selecting previously unselected package r-cran-jquerylib. 188s Preparing to unpack .../243-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 188s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 188s Selecting previously unselected package r-cran-fs. 188s Preparing to unpack .../244-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 188s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 188s Selecting previously unselected package r-cran-sass. 188s Preparing to unpack .../245-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 188s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 188s Selecting previously unselected package r-cran-bslib. 188s Preparing to unpack .../246-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 188s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 188s Selecting previously unselected package r-cran-fontawesome. 188s Preparing to unpack .../247-r-cran-fontawesome_0.5.2-1_all.deb ... 188s Unpacking r-cran-fontawesome (0.5.2-1) ... 188s Selecting previously unselected package r-cran-tinytex. 188s Preparing to unpack .../248-r-cran-tinytex_0.49-1_all.deb ... 188s Unpacking r-cran-tinytex (0.49-1) ... 188s Selecting previously unselected package libjs-modernizr. 188s Preparing to unpack .../249-libjs-modernizr_2.6.2+ds1-5_all.deb ... 188s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 188s Selecting previously unselected package r-cran-littler. 188s Preparing to unpack .../250-r-cran-littler_0.3.19-1_amd64.deb ... 188s Unpacking r-cran-littler (0.3.19-1) ... 188s Selecting previously unselected package r-cran-pkgkitten. 188s Preparing to unpack .../251-r-cran-pkgkitten_0.2.3-1_all.deb ... 188s Unpacking r-cran-pkgkitten (0.2.3-1) ... 188s Selecting previously unselected package r-cran-rcpp. 188s Preparing to unpack .../252-r-cran-rcpp_1.0.12-1_amd64.deb ... 188s Unpacking r-cran-rcpp (1.0.12-1) ... 188s Selecting previously unselected package r-cran-later. 188s Preparing to unpack .../253-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 188s Unpacking r-cran-later (1.3.2+dfsg-1) ... 189s Selecting previously unselected package r-cran-promises. 189s Preparing to unpack .../254-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 189s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 189s Selecting previously unselected package r-cran-httpuv. 189s Preparing to unpack .../255-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 189s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 189s Selecting previously unselected package r-cran-xtable. 189s Preparing to unpack .../256-r-cran-xtable_1%3a1.8-4-2_all.deb ... 189s Unpacking r-cran-xtable (1:1.8-4-2) ... 189s Selecting previously unselected package r-cran-sourcetools. 189s Preparing to unpack .../257-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 189s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 189s Selecting previously unselected package r-cran-commonmark. 189s Preparing to unpack .../258-r-cran-commonmark_1.9.1-1_amd64.deb ... 189s Unpacking r-cran-commonmark (1.9.1-1) ... 189s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 189s Preparing to unpack .../259-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 189s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 189s Selecting previously unselected package r-cran-shiny. 189s Preparing to unpack .../260-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 189s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 189s Selecting previously unselected package r-cran-rmarkdown. 189s Preparing to unpack .../261-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 189s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 189s Selecting previously unselected package r-cran-htmlwidgets. 189s Preparing to unpack .../262-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 189s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 189s Selecting previously unselected package r-cran-rstudioapi. 189s Preparing to unpack .../263-r-cran-rstudioapi_0.15.0-1_all.deb ... 189s Unpacking r-cran-rstudioapi (0.15.0-1) ... 189s Selecting previously unselected package r-cran-htmltable. 189s Preparing to unpack .../264-r-cran-htmltable_2.4.2-1_all.deb ... 189s Unpacking r-cran-htmltable (2.4.2-1) ... 189s Selecting previously unselected package r-cran-viridis. 189s Preparing to unpack .../265-r-cran-viridis_0.6.5-1_all.deb ... 189s Unpacking r-cran-viridis (0.6.5-1) ... 189s Selecting previously unselected package r-cran-formula. 189s Preparing to unpack .../266-r-cran-formula_1.2-5-1_all.deb ... 189s Unpacking r-cran-formula (1.2-5-1) ... 189s Selecting previously unselected package r-cran-chron. 189s Preparing to unpack .../267-r-cran-chron_2.3-61-2_amd64.deb ... 189s Unpacking r-cran-chron (2.3-61-2) ... 189s Selecting previously unselected package r-cran-jpeg. 189s Preparing to unpack .../268-r-cran-jpeg_0.1-10-1_amd64.deb ... 189s Unpacking r-cran-jpeg (0.1-10-1) ... 189s Selecting previously unselected package r-cran-deldir. 189s Preparing to unpack .../269-r-cran-deldir_2.0-4-1_amd64.deb ... 189s Unpacking r-cran-deldir (2.0-4-1) ... 189s Selecting previously unselected package r-cran-rcppeigen. 189s Preparing to unpack .../270-r-cran-rcppeigen_0.3.3.9.4-1_amd64.deb ... 189s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 189s Selecting previously unselected package r-cran-interp. 189s Preparing to unpack .../271-r-cran-interp_1.1-6-1_amd64.deb ... 189s Unpacking r-cran-interp (1.1-6-1) ... 190s Selecting previously unselected package r-cran-latticeextra. 190s Preparing to unpack .../272-r-cran-latticeextra_0.6-30-1_all.deb ... 190s Unpacking r-cran-latticeextra (0.6-30-1) ... 190s Selecting previously unselected package r-cran-acepack. 190s Preparing to unpack .../273-r-cran-acepack_1.4.2-1_amd64.deb ... 190s Unpacking r-cran-acepack (1.4.2-1) ... 190s Selecting previously unselected package r-cran-hmisc. 190s Preparing to unpack .../274-r-cran-hmisc_5.1-1-1_amd64.deb ... 190s Unpacking r-cran-hmisc (5.1-1-1) ... 190s Selecting previously unselected package r-cran-dichromat. 190s Preparing to unpack .../275-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 190s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 190s Selecting previously unselected package r-cran-matrixstats. 190s Preparing to unpack .../276-r-cran-matrixstats_1.2.0-1_amd64.deb ... 190s Unpacking r-cran-matrixstats (1.2.0-1) ... 190s Selecting previously unselected package r-bioc-matrixgenerics. 190s Preparing to unpack .../277-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 190s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 190s Selecting previously unselected package r-cran-abind. 190s Preparing to unpack .../278-r-cran-abind_1.4-5-2_all.deb ... 190s Unpacking r-cran-abind (1.4-5-2) ... 190s Selecting previously unselected package r-bioc-s4arrays. 190s Preparing to unpack .../279-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 190s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 190s Selecting previously unselected package r-bioc-sparsearray. 190s Preparing to unpack .../280-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 190s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 190s Selecting previously unselected package r-bioc-delayedarray. 190s Preparing to unpack .../281-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 190s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 190s Selecting previously unselected package r-bioc-summarizedexperiment. 190s Preparing to unpack .../282-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 190s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 190s Selecting previously unselected package r-bioc-rhtslib. 190s Preparing to unpack .../283-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 190s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 190s Selecting previously unselected package r-bioc-rsamtools. 190s Preparing to unpack .../284-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 190s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 190s Selecting previously unselected package r-bioc-genomicalignments. 190s Preparing to unpack .../285-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 190s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 190s Selecting previously unselected package r-cran-rjson. 190s Preparing to unpack .../286-r-cran-rjson_0.2.21-1_amd64.deb ... 190s Unpacking r-cran-rjson (0.2.21-1) ... 190s Selecting previously unselected package r-cran-restfulr. 190s Preparing to unpack .../287-r-cran-restfulr_0.0.15-1_amd64.deb ... 190s Unpacking r-cran-restfulr (0.0.15-1) ... 190s Selecting previously unselected package r-bioc-rtracklayer. 190s Preparing to unpack .../288-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 190s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 190s Selecting previously unselected package r-bioc-genomicfeatures. 190s Preparing to unpack .../289-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 190s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 190s Selecting previously unselected package r-bioc-bsgenome. 190s Preparing to unpack .../290-r-bioc-bsgenome_1.70.2-1_all.deb ... 190s Unpacking r-bioc-bsgenome (1.70.2-1) ... 191s Selecting previously unselected package r-bioc-variantannotation. 191s Preparing to unpack .../291-r-bioc-variantannotation_1.48.1-1_amd64.deb ... 191s Unpacking r-bioc-variantannotation (1.48.1-1) ... 191s Selecting previously unselected package r-bioc-protgenerics. 191s Preparing to unpack .../292-r-bioc-protgenerics_1.34.0-1_all.deb ... 191s Unpacking r-bioc-protgenerics (1.34.0-1) ... 191s Selecting previously unselected package r-bioc-ensembldb. 191s Preparing to unpack .../293-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 191s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 191s Selecting previously unselected package r-bioc-biovizbase. 191s Preparing to unpack .../294-r-bioc-biovizbase_1.50.0-1_amd64.deb ... 191s Unpacking r-bioc-biovizbase (1.50.0-1) ... 191s Selecting previously unselected package r-cran-plyr. 191s Preparing to unpack .../295-r-cran-plyr_1.8.9-1_amd64.deb ... 191s Unpacking r-cran-plyr (1.8.9-1) ... 191s Selecting previously unselected package r-cran-reshape2. 191s Preparing to unpack .../296-r-cran-reshape2_1.4.4-2build1_amd64.deb ... 191s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 191s Selecting previously unselected package r-cran-biocmanager. 191s Preparing to unpack .../297-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 191s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 191s Selecting previously unselected package r-bioc-graph. 191s Preparing to unpack .../298-r-bioc-graph_1.80.0-1_amd64.deb ... 191s Unpacking r-bioc-graph (1.80.0-1) ... 191s Selecting previously unselected package r-bioc-rbgl. 191s Preparing to unpack .../299-r-bioc-rbgl_1.78.0+dfsg-1_amd64.deb ... 191s Unpacking r-bioc-rbgl (1.78.0+dfsg-1) ... 191s Selecting previously unselected package r-bioc-organismdbi. 191s Preparing to unpack .../300-r-bioc-organismdbi_1.44.0+dfsg-1_all.deb ... 191s Unpacking r-bioc-organismdbi (1.44.0+dfsg-1) ... 191s Selecting previously unselected package r-cran-broom. 191s Preparing to unpack .../301-r-cran-broom_1.0.5+dfsg-1_all.deb ... 191s Unpacking r-cran-broom (1.0.5+dfsg-1) ... 191s Selecting previously unselected package r-cran-forcats. 191s Preparing to unpack .../302-r-cran-forcats_1.0.0-1_all.deb ... 191s Unpacking r-cran-forcats (1.0.0-1) ... 191s Selecting previously unselected package r-cran-clipr. 191s Preparing to unpack .../303-r-cran-clipr_0.8.0-1_all.deb ... 191s Unpacking r-cran-clipr (0.8.0-1) ... 191s Selecting previously unselected package r-cran-tzdb. 191s Preparing to unpack .../304-r-cran-tzdb_0.4.0-2_amd64.deb ... 191s Unpacking r-cran-tzdb (0.4.0-2) ... 191s Selecting previously unselected package r-cran-vroom. 191s Preparing to unpack .../305-r-cran-vroom_1.6.5-1_amd64.deb ... 191s Unpacking r-cran-vroom (1.6.5-1) ... 191s Selecting previously unselected package r-cran-readr. 191s Preparing to unpack .../306-r-cran-readr_2.1.5-1_amd64.deb ... 191s Unpacking r-cran-readr (2.1.5-1) ... 191s Selecting previously unselected package r-cran-haven. 191s Preparing to unpack .../307-r-cran-haven_2.5.4-1_amd64.deb ... 191s Unpacking r-cran-haven (2.5.4-1) ... 191s Selecting previously unselected package r-cran-labelled. 191s Preparing to unpack .../308-r-cran-labelled_2.12.0-2_all.deb ... 191s Unpacking r-cran-labelled (2.12.0-2) ... 191s Selecting previously unselected package r-cran-broom.helpers. 191s Preparing to unpack .../309-r-cran-broom.helpers_1.14.0-2_all.deb ... 191s Unpacking r-cran-broom.helpers (1.14.0-2) ... 191s Selecting previously unselected package r-cran-patchwork. 191s Preparing to unpack .../310-r-cran-patchwork_1.2.0-1_all.deb ... 191s Unpacking r-cran-patchwork (1.2.0-1) ... 192s Selecting previously unselected package r-cran-ggstats. 192s Preparing to unpack .../311-r-cran-ggstats_0.5.1-2_all.deb ... 192s Unpacking r-cran-ggstats (0.5.1-2) ... 192s Selecting previously unselected package r-cran-ggally. 192s Preparing to unpack .../312-r-cran-ggally_2.2.1-1_all.deb ... 192s Unpacking r-cran-ggally (2.2.1-1) ... 192s Selecting previously unselected package r-bioc-ggbio. 192s Preparing to unpack .../313-r-bioc-ggbio_1.50.0-1_all.deb ... 192s Unpacking r-bioc-ggbio (1.50.0-1) ... 192s Selecting previously unselected package r-cran-assertthat. 192s Preparing to unpack .../314-r-cran-assertthat_0.2.1-2build1_all.deb ... 192s Unpacking r-cran-assertthat (0.2.1-2build1) ... 192s Selecting previously unselected package r-bioc-structuralvariantannotation. 192s Preparing to unpack .../315-r-bioc-structuralvariantannotation_1.18.0+ds-1_all.deb ... 192s Unpacking r-bioc-structuralvariantannotation (1.18.0+ds-1) ... 192s Selecting previously unselected package r-cran-brew. 192s Preparing to unpack .../316-r-cran-brew_1.0-10-1_all.deb ... 192s Unpacking r-cran-brew (1.0-10-1) ... 192s Selecting previously unselected package r-cran-brio. 192s Preparing to unpack .../317-r-cran-brio_1.1.4-1_amd64.deb ... 192s Unpacking r-cran-brio (1.1.4-1) ... 192s Selecting previously unselected package r-cran-ps. 192s Preparing to unpack .../318-r-cran-ps_1.7.6-1_amd64.deb ... 192s Unpacking r-cran-ps (1.7.6-1) ... 192s Selecting previously unselected package r-cran-processx. 192s Preparing to unpack .../319-r-cran-processx_3.8.3-1_amd64.deb ... 192s Unpacking r-cran-processx (3.8.3-1) ... 192s Selecting previously unselected package r-cran-callr. 192s Preparing to unpack .../320-r-cran-callr_3.7.3-2_all.deb ... 192s Unpacking r-cran-callr (3.7.3-2) ... 192s Selecting previously unselected package r-cran-rematch. 192s Preparing to unpack .../321-r-cran-rematch_2.0.0-1_all.deb ... 192s Unpacking r-cran-rematch (2.0.0-1) ... 192s Selecting previously unselected package r-cran-cellranger. 192s Preparing to unpack .../322-r-cran-cellranger_1.1.0-3_all.deb ... 192s Unpacking r-cran-cellranger (1.1.0-3) ... 192s Selecting previously unselected package r-cran-conflicted. 192s Preparing to unpack .../323-r-cran-conflicted_1.2.0-1.1_all.deb ... 192s Unpacking r-cran-conflicted (1.2.0-1.1) ... 192s Selecting previously unselected package r-cran-credentials. 192s Preparing to unpack .../324-r-cran-credentials_2.0.1-1_all.deb ... 192s Unpacking r-cran-credentials (2.0.1-1) ... 192s Selecting previously unselected package r-cran-desc. 192s Preparing to unpack .../325-r-cran-desc_1.4.3-1_all.deb ... 192s Unpacking r-cran-desc (1.4.3-1) ... 192s Selecting previously unselected package r-cran-zip. 192s Preparing to unpack .../326-r-cran-zip_2.3.1-1_amd64.deb ... 192s Unpacking r-cran-zip (2.3.1-1) ... 192s Selecting previously unselected package r-cran-gert. 192s Preparing to unpack .../327-r-cran-gert_2.0.1+dfsg-1_amd64.deb ... 192s Unpacking r-cran-gert (2.0.1+dfsg-1) ... 192s Selecting previously unselected package r-cran-gitcreds. 192s Preparing to unpack .../328-r-cran-gitcreds_0.1.2-1_all.deb ... 192s Unpacking r-cran-gitcreds (0.1.2-1) ... 192s Selecting previously unselected package r-cran-httr2. 192s Preparing to unpack .../329-r-cran-httr2_1.0.0-1_all.deb ... 192s Unpacking r-cran-httr2 (1.0.0-1) ... 192s Selecting previously unselected package r-cran-ini. 192s Preparing to unpack .../330-r-cran-ini_0.3.1-2build1_all.deb ... 192s Unpacking r-cran-ini (0.3.1-2build1) ... 193s Selecting previously unselected package r-cran-gh. 193s Preparing to unpack .../331-r-cran-gh_1.4.0-1_all.deb ... 193s Unpacking r-cran-gh (1.4.0-1) ... 193s Selecting previously unselected package r-cran-rprojroot. 193s Preparing to unpack .../332-r-cran-rprojroot_2.0.4-1_all.deb ... 193s Unpacking r-cran-rprojroot (2.0.4-1) ... 193s Selecting previously unselected package r-cran-whisker. 193s Preparing to unpack .../333-r-cran-whisker_0.4.1-1_all.deb ... 193s Unpacking r-cran-whisker (0.4.1-1) ... 193s Selecting previously unselected package r-cran-usethis. 193s Preparing to unpack .../334-r-cran-usethis_2.2.2-1_all.deb ... 193s Unpacking r-cran-usethis (2.2.2-1) ... 193s Selecting previously unselected package r-cran-miniui. 193s Preparing to unpack .../335-r-cran-miniui_0.1.1.1-3build1_all.deb ... 193s Unpacking r-cran-miniui (0.1.1.1-3build1) ... 193s Selecting previously unselected package r-cran-pkgbuild. 193s Preparing to unpack .../336-r-cran-pkgbuild_1.4.3-1_all.deb ... 193s Unpacking r-cran-pkgbuild (1.4.3-1) ... 193s Selecting previously unselected package r-cran-downlit. 193s Preparing to unpack .../337-r-cran-downlit_0.4.3-1_all.deb ... 193s Unpacking r-cran-downlit (0.4.3-1) ... 193s Selecting previously unselected package r-cran-systemfonts. 193s Preparing to unpack .../338-r-cran-systemfonts_1.0.5-1_amd64.deb ... 193s Unpacking r-cran-systemfonts (1.0.5-1) ... 193s Selecting previously unselected package r-cran-textshaping. 193s Preparing to unpack .../339-r-cran-textshaping_0.3.7-2_amd64.deb ... 193s Unpacking r-cran-textshaping (0.3.7-2) ... 193s Selecting previously unselected package r-cran-ragg. 193s Preparing to unpack .../340-r-cran-ragg_1.2.7-1_amd64.deb ... 193s Unpacking r-cran-ragg (1.2.7-1) ... 193s Selecting previously unselected package libjs-bootswatch. 193s Preparing to unpack .../341-libjs-bootswatch_3.3.7+dfsg2-1.1_all.deb ... 193s Unpacking libjs-bootswatch (3.3.7+dfsg2-1.1) ... 193s Selecting previously unselected package r-cran-pkgdown. 193s Preparing to unpack .../342-r-cran-pkgdown_2.0.7-2_all.deb ... 193s Unpacking r-cran-pkgdown (2.0.7-2) ... 193s Selecting previously unselected package r-cran-pkgload. 193s Preparing to unpack .../343-r-cran-pkgload_1.3.4-1_all.deb ... 193s Unpacking r-cran-pkgload (1.3.4-1) ... 193s Selecting previously unselected package r-cran-profvis. 193s Preparing to unpack .../344-r-cran-profvis_0.3.8+dfsg-1_amd64.deb ... 193s Unpacking r-cran-profvis (0.3.8+dfsg-1) ... 193s Selecting previously unselected package r-cran-sessioninfo. 193s Preparing to unpack .../345-r-cran-sessioninfo_1.2.2-1_all.deb ... 193s Unpacking r-cran-sessioninfo (1.2.2-1) ... 193s Selecting previously unselected package r-cran-xopen. 193s Preparing to unpack .../346-r-cran-xopen_1.0.0+dfsg-1_all.deb ... 193s Unpacking r-cran-xopen (1.0.0+dfsg-1) ... 193s Selecting previously unselected package r-cran-rcmdcheck. 193s Preparing to unpack .../347-r-cran-rcmdcheck_1.4.0-2_all.deb ... 193s Unpacking r-cran-rcmdcheck (1.4.0-2) ... 193s Selecting previously unselected package r-cran-remotes. 193s Preparing to unpack .../348-r-cran-remotes_2.4.2.1+dfsg-2_all.deb ... 193s Unpacking r-cran-remotes (2.4.2.1+dfsg-2) ... 193s Selecting previously unselected package r-cran-roxygen2. 193s Preparing to unpack .../349-r-cran-roxygen2_7.3.1-1_amd64.deb ... 193s Unpacking r-cran-roxygen2 (7.3.1-1) ... 193s Selecting previously unselected package r-cran-rversions. 194s Preparing to unpack .../350-r-cran-rversions_2.1.2-1_all.deb ... 194s Unpacking r-cran-rversions (2.1.2-1) ... 194s Selecting previously unselected package r-cran-praise. 194s Preparing to unpack .../351-r-cran-praise_1.0.0-4build1_all.deb ... 194s Unpacking r-cran-praise (1.0.0-4build1) ... 194s Selecting previously unselected package r-cran-diffobj. 194s Preparing to unpack .../352-r-cran-diffobj_0.3.5-1_amd64.deb ... 194s Unpacking r-cran-diffobj (0.3.5-1) ... 194s Selecting previously unselected package r-cran-rematch2. 194s Preparing to unpack .../353-r-cran-rematch2_2.1.2-2build1_all.deb ... 194s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 194s Selecting previously unselected package r-cran-waldo. 194s Preparing to unpack .../354-r-cran-waldo_0.5.2-1build1_all.deb ... 194s Unpacking r-cran-waldo (0.5.2-1build1) ... 194s Selecting previously unselected package r-cran-testthat. 194s Preparing to unpack .../355-r-cran-testthat_3.2.1-1_amd64.deb ... 194s Unpacking r-cran-testthat (3.2.1-1) ... 194s Selecting previously unselected package r-cran-urlchecker. 194s Preparing to unpack .../356-r-cran-urlchecker_1.0.1-2_all.deb ... 194s Unpacking r-cran-urlchecker (1.0.1-2) ... 194s Selecting previously unselected package r-cran-devtools. 194s Preparing to unpack .../357-r-cran-devtools_2.4.5-1_all.deb ... 194s Unpacking r-cran-devtools (2.4.5-1) ... 194s Selecting previously unselected package r-cran-dtplyr. 194s Preparing to unpack .../358-r-cran-dtplyr_1.3.1-1_all.deb ... 194s Unpacking r-cran-dtplyr (1.3.1-1) ... 194s Selecting previously unselected package r-cran-gargle. 194s Preparing to unpack .../359-r-cran-gargle_1.5.2-1_all.deb ... 194s Unpacking r-cran-gargle (1.5.2-1) ... 194s Selecting previously unselected package r-cran-uuid. 194s Preparing to unpack .../360-r-cran-uuid_1.2-0-1_amd64.deb ... 194s Unpacking r-cran-uuid (1.2-0-1) ... 194s Selecting previously unselected package r-cran-googledrive. 194s Preparing to unpack .../361-r-cran-googledrive_2.1.1-1_all.deb ... 194s Unpacking r-cran-googledrive (2.1.1-1) ... 194s Selecting previously unselected package r-cran-ids. 194s Preparing to unpack .../362-r-cran-ids_1.0.1-2_all.deb ... 194s Unpacking r-cran-ids (1.0.1-2) ... 194s Selecting previously unselected package r-cran-googlesheets4. 194s Preparing to unpack .../363-r-cran-googlesheets4_1.1.1-1_all.deb ... 194s Unpacking r-cran-googlesheets4 (1.1.1-1) ... 194s Selecting previously unselected package r-cran-timechange. 194s Preparing to unpack .../364-r-cran-timechange_0.3.0-1_amd64.deb ... 194s Unpacking r-cran-timechange (0.3.0-1) ... 194s Selecting previously unselected package r-cran-lubridate. 194s Preparing to unpack .../365-r-cran-lubridate_1.9.3+dfsg-1_amd64.deb ... 194s Unpacking r-cran-lubridate (1.9.3+dfsg-1) ... 194s Selecting previously unselected package r-cran-modelr. 194s Preparing to unpack .../366-r-cran-modelr_0.1.11-1_all.deb ... 194s Unpacking r-cran-modelr (0.1.11-1) ... 194s Selecting previously unselected package r-cran-readxl. 194s Preparing to unpack .../367-r-cran-readxl_1.4.3-1_amd64.deb ... 194s Unpacking r-cran-readxl (1.4.3-1) ... 194s Selecting previously unselected package r-cran-reprex. 194s Preparing to unpack .../368-r-cran-reprex_2.1.0-1_all.deb ... 194s Unpacking r-cran-reprex (2.1.0-1) ... 195s Selecting previously unselected package r-cran-selectr. 195s Preparing to unpack .../369-r-cran-selectr_0.4-2-2build1_all.deb ... 195s Unpacking r-cran-selectr (0.4-2-2build1) ... 195s Selecting previously unselected package r-cran-rvest. 195s Preparing to unpack .../370-r-cran-rvest_1.0.3-1_all.deb ... 195s Unpacking r-cran-rvest (1.0.3-1) ... 195s Selecting previously unselected package r-cran-tidyverse. 195s Preparing to unpack .../371-r-cran-tidyverse_2.0.0+dfsg-1_all.deb ... 195s Unpacking r-cran-tidyverse (2.0.0+dfsg-1) ... 195s Setting up libjs-json (0~20221030+~1.0.8-1) ... 195s Setting up javascript-common (11+nmu1) ... 195s Setting up libgraphite2-3:amd64 (1.3.14-2) ... 195s Setting up libpixman-1-0:amd64 (0.42.2-1) ... 195s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ... 195s Setting up libpaper1:amd64 (1.1.29) ... 195s 195s Creating config file /etc/papersize with new version 195s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 195s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 195s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 195s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 195s Setting up libdatrie1:amd64 (0.2.13-3) ... 195s Setting up libjs-popper.js (1.16.1+ds-6) ... 195s Setting up libxcb-render0:amd64 (1.15-1) ... 195s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 195s 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Setting up r-cran-tidyr (1.3.1-1) ... 198s Setting up r-cran-rcmdcheck (1.4.0-2) ... 198s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 198s Setting up r-cran-googledrive (2.1.1-1) ... 198s Setting up r-cran-roxygen2 (7.3.1-1) ... 198s Setting up r-cran-googlesheets4 (1.1.1-1) ... 198s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 198s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 198s Setting up r-cran-patchwork (1.2.0-1) ... 198s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 198s Setting up r-cran-readxl (1.4.3-1) ... 198s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 198s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 198s Setting up r-cran-haven (2.5.4-1) ... 198s Setting up r-bioc-annotationdbi (1.64.1-1) ... 198s Setting up r-cran-usethis (2.2.2-1) ... 198s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 198s Setting up r-cran-testthat (3.2.1-1) ... 198s Setting up r-cran-miniui (0.1.1.1-3build1) ... 198s Setting up r-cran-broom (1.0.5+dfsg-1) ... 198s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 198s Setting up r-cran-pkgdown (2.0.7-2) ... 198s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 198s Setting up r-cran-labelled (2.12.0-2) ... 198s Setting up r-bioc-genomicalignments (1.38.2-1) ... 198s Setting up r-cran-reprex (2.1.0-1) ... 198s Setting up r-bioc-rtracklayer (1.62.0-1) ... 198s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 198s Setting up r-cran-modelr (0.1.11-1) ... 198s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 198s Setting up r-cran-profvis (0.3.8+dfsg-1) ... 198s Setting up r-cran-broom.helpers (1.14.0-2) ... 198s Setting up r-bioc-bsgenome (1.70.2-1) ... 198s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 198s Setting up r-bioc-organismdbi (1.44.0+dfsg-1) ... 198s Setting up r-cran-ggstats (0.5.1-2) ... 198s Setting up r-cran-devtools (2.4.5-1) ... 198s Setting up r-bioc-variantannotation (1.48.1-1) ... 198s Setting up r-cran-tidyverse (2.0.0+dfsg-1) ... 198s Setting up r-cran-ggally (2.2.1-1) ... 198s Setting up r-cran-htmltable (2.4.2-1) ... 198s Setting up r-bioc-structuralvariantannotation (1.18.0+ds-1) ... 198s Setting up r-cran-hmisc (5.1-1-1) ... 198s Setting up r-bioc-biovizbase (1.50.0-1) ... 198s Setting up r-bioc-ggbio (1.50.0-1) ... 198s Processing triggers for libc-bin (2.39-0ubuntu2) ... 198s Processing triggers for man-db (2.12.0-3) ... 200s Processing triggers for install-info (7.1-3) ... 200s Reading package lists... 201s Building dependency tree... 201s Reading state information... 201s Starting pkgProblemResolver with broken count: 0 201s Starting 2 pkgProblemResolver with broken count: 0 201s Done 202s The following NEW packages will be installed: 202s autopkgtest-satdep 202s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 202s Need to get 0 B/696 B of archives. 202s After this operation, 0 B of additional disk space will be used. 202s Get:1 /tmp/autopkgtest.GghTto/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 202s Selecting previously unselected package autopkgtest-satdep. 202s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121714 files and directories currently installed.) 202s Preparing to unpack .../2-autopkgtest-satdep.deb ... 202s Unpacking autopkgtest-satdep (0) ... 202s Setting up autopkgtest-satdep (0) ... 204s (Reading database ... 121714 files and directories currently installed.) 204s Removing autopkgtest-satdep (0) ... 204s autopkgtest [05:09:51]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 204s autopkgtest [05:09:51]: test pkg-r-autopkgtest: [----------------------- 204s Test: Try to load the R library StructuralVariantAnnotation 204s 204s R version 4.3.2 (2023-10-31) -- "Eye Holes" 204s Copyright (C) 2023 The R Foundation for Statistical Computing 204s Platform: x86_64-pc-linux-gnu (64-bit) 204s 204s R is free software and comes with ABSOLUTELY NO WARRANTY. 204s You are welcome to redistribute it under certain conditions. 204s Type 'license()' or 'licence()' for distribution details. 204s 204s R is a collaborative project with many contributors. 204s Type 'contributors()' for more information and 204s 'citation()' on how to cite R or R packages in publications. 204s 204s Type 'demo()' for some demos, 'help()' for on-line help, or 204s 'help.start()' for an HTML browser interface to help. 204s Type 'q()' to quit R. 204s 204s > library('StructuralVariantAnnotation') 204s Loading required package: GenomicRanges 204s Loading required package: stats4 204s Loading required package: BiocGenerics 204s 204s Attaching package: ‘BiocGenerics’ 204s 204s The following objects are masked from ‘package:stats’: 204s 204s IQR, mad, sd, var, xtabs 204s 204s The following objects are masked from ‘package:base’: 204s 204s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 204s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 204s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 204s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 204s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 204s table, tapply, union, unique, unsplit, which.max, which.min 204s 204s Loading required package: S4Vectors 205s 205s Attaching package: ‘S4Vectors’ 205s 205s The following object is masked from ‘package:utils’: 205s 205s findMatches 205s 205s The following objects are masked from ‘package:base’: 205s 205s expand.grid, I, unname 205s 205s Loading required package: IRanges 205s Loading required package: GenomeInfoDb 206s Loading required package: rtracklayer 212s Loading required package: VariantAnnotation 212s Loading required package: MatrixGenerics 212s Loading required package: matrixStats 212s 212s Attaching package: ‘MatrixGenerics’ 212s 212s The following objects are masked from ‘package:matrixStats’: 212s 212s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 212s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 212s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 212s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 212s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 212s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 212s colWeightedMeans, colWeightedMedians, colWeightedSds, 212s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 212s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 212s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 212s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 212s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 212s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 212s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 212s rowWeightedSds, rowWeightedVars 212s 212s Loading required package: SummarizedExperiment 212s Loading required package: Biobase 212s Welcome to Bioconductor 212s 212s Vignettes contain introductory material; view with 212s 'browseVignettes()'. To cite Bioconductor, see 212s 'citation("Biobase")', and for packages 'citation("pkgname")'. 212s 212s 212s Attaching package: ‘Biobase’ 212s 212s The following object is masked from ‘package:MatrixGenerics’: 212s 212s rowMedians 212s 212s The following objects are masked from ‘package:matrixStats’: 212s 212s anyMissing, rowMedians 212s 212s Loading required package: Rsamtools 212s Loading required package: Biostrings 212s Loading required package: XVector 212s 212s Attaching package: ‘Biostrings’ 212s 212s The following object is masked from ‘package:base’: 212s 212s strsplit 212s 215s 215s Attaching package: ‘VariantAnnotation’ 215s 215s The following object is masked from ‘package:base’: 215s 215s tabulate 215s 215s > 215s > 215s Other tests are currently unsupported! 215s They will be progressively added. 216s autopkgtest [05:10:03]: test pkg-r-autopkgtest: -----------------------] 216s autopkgtest [05:10:03]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 216s pkg-r-autopkgtest PASS 216s autopkgtest [05:10:03]: @@@@@@@@@@@@@@@@@@@@ summary 216s pkg-r-autopkgtest PASS 227s Creating nova instance adt-noble-i386-r-bioc-structuralvariantannotation-20240322-050626-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...