0s autopkgtest [19:05:41]: starting date and time: 2024-03-19 19:05:41+0000 0s autopkgtest [19:05:41]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [19:05:41]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.wjj9z3bx/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-variantannotation --apt-upgrade r-bioc-structuralvariantannotation --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-bioc-variantannotation/1.48.1-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-1.secgroup --name adt-noble-i386-r-bioc-structuralvariantannotation-20240319-190541-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 273s autopkgtest [19:10:14]: testbed dpkg architecture: amd64 274s autopkgtest [19:10:15]: testbed apt version: 2.7.12 274s autopkgtest [19:10:15]: test architecture: i386 274s autopkgtest [19:10:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 274s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 274s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 274s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 274s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3789 kB] 274s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [52.7 kB] 274s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [675 kB] 274s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [439 kB] 274s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 274s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 274s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 274s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 274s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1270 kB] 274s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4245 kB] 274s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 274s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [16.2 kB] 274s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [67.2 kB] 274s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 277s Fetched 11.2 MB in 1s (8011 kB/s) 278s Reading package lists... 279s Reading package lists... 279s Building dependency tree... 279s Reading state information... 280s Calculating upgrade... 280s The following packages will be upgraded: 280s ubuntu-minimal ubuntu-standard 280s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 280s Need to get 21.5 kB of archives. 280s After this operation, 0 B of additional disk space will be used. 280s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 ubuntu-minimal amd64 1.536build1 [10.7 kB] 280s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 ubuntu-standard amd64 1.536build1 [10.7 kB] 280s Fetched 21.5 kB in 0s (1184 kB/s) 280s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 280s Preparing to unpack .../ubuntu-minimal_1.536build1_amd64.deb ... 280s Unpacking ubuntu-minimal (1.536build1) over (1.536) ... 281s Preparing to unpack .../ubuntu-standard_1.536build1_amd64.deb ... 281s Unpacking ubuntu-standard (1.536build1) over (1.536) ... 281s Setting up ubuntu-minimal (1.536build1) ... 281s Setting up ubuntu-standard (1.536build1) ... 281s Reading package lists... 281s Building dependency tree... 281s Reading state information... 281s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 282s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 282s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 282s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 282s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 283s Reading package lists... 283s Reading package lists... 284s Building dependency tree... 284s Reading state information... 284s Calculating upgrade... 284s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 284s Reading package lists... 285s Building dependency tree... 285s Reading state information... 285s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 286s autopkgtest [19:10:27]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 286s autopkgtest [19:10:27]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-structuralvariantannotation 286s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-structuralvariantannotation 1.18.0+ds-1 (dsc) [2600 B] 286s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-structuralvariantannotation 1.18.0+ds-1 (tar) [262 kB] 286s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-structuralvariantannotation 1.18.0+ds-1 (diff) [6836 B] 286s gpgv: Signature made Fri Dec 1 15:57:35 2023 UTC 286s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 286s gpgv: issuer "tillea@rki.de" 286s gpgv: Can't check signature: No public key 286s dpkg-source: warning: cannot verify inline signature for ./r-bioc-structuralvariantannotation_1.18.0+ds-1.dsc: no acceptable signature found 286s autopkgtest [19:10:27]: testing package r-bioc-structuralvariantannotation version 1.18.0+ds-1 287s autopkgtest [19:10:28]: build not needed 291s autopkgtest [19:10:32]: test pkg-r-autopkgtest: preparing testbed 297s Note, using file '/tmp/autopkgtest.wHqrFF/1-autopkgtest-satdep.dsc' to get the build dependencies 297s Reading package lists... 297s Building dependency tree... 297s Reading state information... 298s Starting pkgProblemResolver with broken count: 1 298s Starting 2 pkgProblemResolver with broken count: 1 298s Investigating (0) curl:amd64 < 8.5.0-2ubuntu2 @ii K Ib > 298s Broken curl:amd64 Depends on libcurl4:amd64 < 8.5.0-2ubuntu2 @ii pR > (= 8.5.0-2ubuntu2) 298s Considering libcurl4:amd64 0 as a solution to curl:amd64 1 298s Added libcurl4:amd64 to the remove list 298s Investigating (1) curl:amd64 < 8.5.0-2ubuntu2 @ii K Ib > 298s Broken curl:amd64 Depends on libcurl4:amd64 < 8.5.0-2ubuntu2 @ii pR > (= 8.5.0-2ubuntu2) 298s Considering libcurl4:amd64 1 as a solution to curl:amd64 1 298s Removing curl:amd64 rather than change libcurl4:amd64 298s Investigating (1) pollinate:amd64 < 4.33-3.1ubuntu1 @ii K Ib > 298s Broken pollinate:amd64 Depends on curl:amd64 < 8.5.0-2ubuntu2 @ii R > 298s Considering curl:amd64 1 as a solution to pollinate:amd64 0 298s Removing pollinate:amd64 rather than change curl:amd64 298s Done 298s The following packages will be REMOVED: 298s curl libcurl4 libpsl5 libssl3 pollinate 298s The following NEW packages will be installed: 298s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 298s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 298s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 298s g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 298s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 298s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 298s javascript-common libasan8 libatomic1 libblas-dev libblas3 libboost-dev 298s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 298s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 298s libgfortran-13-dev libgfortran5 libgit2-1.7 libgomp1 libgraphite2-3 298s libharfbuzz0b libhttp-parser2.9 libhwasan0 libice6 libicu-dev libisl23 298s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 298s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-bootswatch libjs-d3 298s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 298s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 298s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 298s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 298s liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 298s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 298s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 298s libpixman-1-0 libpkgconf3 libpng-dev libpsl5t64 libquadmath0 libreadline-dev 298s libsharpyuv0 libsm6 libssh2-1 libssl3t64 libstdc++-13-dev libtcl8.6 298s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 298s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 298s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 298s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 298s r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 298s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 298s r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome 298s r-bioc-delayedarray r-bioc-ensembldb r-bioc-genomeinfodb 298s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 298s r-bioc-genomicranges r-bioc-ggbio r-bioc-graph r-bioc-iranges 298s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-organismdbi r-bioc-protgenerics 298s r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 298s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 298s r-bioc-structuralvariantannotation r-bioc-summarizedexperiment 298s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 298s r-cran-acepack r-cran-askpass r-cran-assertthat r-cran-backports 298s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 298s r-cran-bitops r-cran-blob r-cran-brew r-cran-brio r-cran-broom 298s r-cran-broom.helpers r-cran-bslib r-cran-cachem r-cran-callr 298s r-cran-cellranger r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr 298s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 298s r-cran-conflicted r-cran-cpp11 r-cran-crayon r-cran-credentials r-cran-curl 298s r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-desc 298s r-cran-devtools r-cran-dichromat r-cran-diffobj r-cran-digest r-cran-downlit 298s r-cran-dplyr r-cran-dtplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 298s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 298s r-cran-forcats r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 298s r-cran-futile.logger r-cran-futile.options r-cran-gargle r-cran-generics 298s r-cran-gert r-cran-ggally r-cran-ggplot2 r-cran-ggstats r-cran-gh 298s r-cran-gitcreds r-cran-glue r-cran-googledrive r-cran-googlesheets4 298s r-cran-gridextra r-cran-gtable r-cran-haven r-cran-highr r-cran-hmisc 298s r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets 298s r-cran-httpuv r-cran-httr r-cran-httr2 r-cran-ids r-cran-ini r-cran-interp 298s r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr 298s r-cran-labeling r-cran-labelled r-cran-lambda.r r-cran-later r-cran-lattice 298s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 298s r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix 298s r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-miniui 298s r-cran-modelr r-cran-munsell r-cran-nlme r-cran-nnet r-cran-openssl 298s r-cran-patchwork r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 298s r-cran-pkgdown r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 298s r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-profvis 298s r-cran-progress r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-ragg 298s r-cran-rappdirs r-cran-rcmdcheck r-cran-rcolorbrewer r-cran-rcpp 298s r-cran-rcppeigen r-cran-rcurl r-cran-readr r-cran-readxl r-cran-rematch 298s r-cran-rematch2 r-cran-remotes r-cran-reprex r-cran-reshape2 r-cran-restfulr 298s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-roxygen2 r-cran-rpart 298s r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-rversions 298s r-cran-rvest r-cran-sass r-cran-scales r-cran-selectr r-cran-sessioninfo 298s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 298s r-cran-survival r-cran-sys r-cran-systemfonts r-cran-testthat 298s r-cran-textshaping r-cran-tibble r-cran-tidyr r-cran-tidyselect 298s r-cran-tidyverse r-cran-timechange r-cran-tinytex r-cran-tzdb 298s r-cran-urlchecker r-cran-usethis r-cran-utf8 r-cran-uuid r-cran-vctrs 298s r-cran-viridis r-cran-viridislite r-cran-vroom r-cran-waldo r-cran-whisker 298s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xopen r-cran-xtable 298s r-cran-yaml r-cran-zip rpcsvc-proto unzip x11-common xdg-utils zip 298s zlib1g-dev 298s 0 upgraded, 375 newly installed, 5 to remove and 0 not upgraded. 298s Need to get 399 MB of archives. 298s After this operation, 1233 MB of additional disk space will be used. 298s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpsl5t64 amd64 0.21.2-1.1 [57.0 kB] 298s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libssl3t64 amd64 3.0.13-0ubuntu2 [1936 kB] 298s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 298s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 298s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 298s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 299s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 299s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 299s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 299s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 299s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 299s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 299s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 299s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 299s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 299s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 299s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 299s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 299s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 299s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 299s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 299s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 299s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 299s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 299s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 299s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 299s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 299s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 299s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 299s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 299s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 299s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 299s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 299s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 299s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 299s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 299s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 299s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 299s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 299s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 299s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 299s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 299s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 299s Get:44 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 299s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 299s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 299s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 299s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 299s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 299s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 299s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 299s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 299s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 299s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 299s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 299s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 299s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 299s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 299s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 299s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 299s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 299s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 299s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 299s Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcurl4t64 amd64 8.5.0-2ubuntu7 [340 kB] 299s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 299s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 299s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libhttp-parser2.9 amd64 2.9.4-6 [22.0 kB] 299s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libssh2-1 amd64 1.11.0-4 [138 kB] 299s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libgit2-1.7 amd64 1.7.2+ds-1ubuntu1 [528 kB] 299s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 299s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 299s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 299s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 299s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 299s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 299s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 299s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 299s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 299s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 299s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 299s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 299s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 299s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 299s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 299s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 299s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 299s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 299s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 299s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 299s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 299s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 299s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 299s Get:93 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 299s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 299s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 299s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 299s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 299s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 299s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 299s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 299s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 299s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 299s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 299s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 299s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 299s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 299s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 299s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 299s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 299s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 299s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 299s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 299s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 299s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 299s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 299s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 299s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 299s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 299s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 299s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 299s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 299s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 300s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 300s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 300s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 300s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 300s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 300s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 300s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 300s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 300s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 300s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 300s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 300s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 300s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 300s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 300s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 300s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 300s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 300s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 300s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 300s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 300s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 300s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 300s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 300s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 300s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 300s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 300s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 300s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 300s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 300s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 300s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 300s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 300s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 300s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 300s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 300s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 300s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 300s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 300s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 300s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 300s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 300s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 300s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 300s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 300s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 300s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 300s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 300s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 300s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 300s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 300s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 300s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 300s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 300s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 300s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 300s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 300s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 300s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 300s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 300s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 300s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 300s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 300s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 300s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 300s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 300s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 300s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 300s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 301s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 301s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 301s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 301s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 301s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 301s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 301s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 301s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 301s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 301s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 301s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 301s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 301s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 301s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 301s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 301s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 301s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 301s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 301s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 301s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 301s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 301s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 301s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 301s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 301s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 301s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 301s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 301s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 301s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 301s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 301s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 301s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 301s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 301s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 301s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 301s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 301s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 301s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 301s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cluster amd64 2.1.6-1 [554 kB] 301s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 301s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rpart amd64 4.1.23-1 [661 kB] 301s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nnet amd64 7.3-19-2 [112 kB] 301s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-foreign amd64 0.8.86-1 [242 kB] 301s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 301s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-data.table amd64 1.14.10+dfsg-1 [1837 kB] 301s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 301s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 301s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 301s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 301s Get:240 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 301s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 301s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-backports amd64 1.4.1-1 [101 kB] 301s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-checkmate amd64 2.3.1-1 [713 kB] 301s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 301s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 301s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 301s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 301s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 301s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 301s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 301s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 301s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 301s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 301s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 301s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 301s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 301s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 301s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 301s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 301s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 301s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 301s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 301s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 301s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 301s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 301s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 301s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rstudioapi all 0.15.0-1 [277 kB] 301s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltable all 2.4.2-1 [381 kB] 301s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 301s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 301s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-chron amd64 2.3-61-2 [186 kB] 301s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 301s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-deldir amd64 2.0-4-1 [270 kB] 301s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppeigen amd64 0.3.3.9.4-1 [1189 kB] 301s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 301s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 301s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-acepack amd64 1.4.2-1 [61.3 kB] 301s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hmisc amd64 5.1-1-1 [3491 kB] 301s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 301s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 301s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 301s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 301s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 301s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 301s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 301s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 302s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 302s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 302s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 302s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 302s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 302s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 302s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 302s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 302s Get:295 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 r-bioc-variantannotation amd64 1.48.1-1build1 [3532 kB] 302s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 302s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 302s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biovizbase amd64 1.50.0-1 [2665 kB] 302s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 302s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 302s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 302s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-graph amd64 1.80.0-1 [1289 kB] 302s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rbgl amd64 1.78.0+dfsg-1 [551 kB] 302s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-organismdbi all 1.44.0+dfsg-1 [456 kB] 302s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-broom all 1.0.5+dfsg-1 [1729 kB] 302s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-forcats all 1.0.0-1 [369 kB] 302s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-clipr all 0.8.0-1 [53.5 kB] 302s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] 302s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vroom amd64 1.6.5-1 [848 kB] 302s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-readr amd64 2.1.5-1 [766 kB] 302s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-haven amd64 2.5.4-1 [346 kB] 302s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labelled all 2.12.0-2 [312 kB] 302s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-broom.helpers all 1.14.0-2 [557 kB] 302s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-patchwork all 1.2.0-1 [3161 kB] 302s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggstats all 0.5.1-2 [839 kB] 302s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggally all 2.2.1-1 [2022 kB] 302s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ggbio all 1.50.0-1 [2939 kB] 302s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-assertthat all 0.2.1-2build1 [56.5 kB] 302s Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-structuralvariantannotation all 1.18.0+ds-1 [413 kB] 302s Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brew all 1.0-10-1 [77.7 kB] 302s Get:321 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 302s Get:322 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 302s Get:323 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 302s Get:324 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 302s Get:325 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch all 2.0.0-1 [18.3 kB] 302s Get:326 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cellranger all 1.1.0-3 [102 kB] 302s Get:327 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-conflicted all 1.2.0-1.1 [60.8 kB] 302s Get:328 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-credentials all 2.0.1-1 [207 kB] 302s Get:329 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 302s Get:330 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-zip amd64 2.3.1-1 [123 kB] 302s Get:331 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gert amd64 2.0.1+dfsg-1 [234 kB] 302s Get:332 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gitcreds all 0.1.2-1 [93.5 kB] 302s Get:333 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr2 all 1.0.0-1 [553 kB] 302s Get:334 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ini all 0.3.1-2build1 [15.8 kB] 302s Get:335 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gh all 1.4.0-1 [108 kB] 302s Get:336 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 302s Get:337 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-whisker all 0.4.1-1 [62.7 kB] 302s Get:338 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-usethis all 2.2.2-1 [882 kB] 302s Get:339 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-miniui all 0.1.1.1-3build1 [36.1 kB] 302s Get:340 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 302s Get:341 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-downlit all 0.4.3-1 [125 kB] 302s Get:342 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-systemfonts amd64 1.0.5-1 [229 kB] 302s Get:343 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-textshaping amd64 0.3.7-2 [95.5 kB] 302s Get:344 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ragg amd64 1.2.7-1 [395 kB] 302s Get:345 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootswatch all 3.3.7+dfsg2-1.1 [133 kB] 302s Get:346 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgdown all 2.0.7-2 [837 kB] 302s Get:347 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 302s Get:348 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-profvis amd64 0.3.8+dfsg-1 [105 kB] 302s Get:349 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sessioninfo all 1.2.2-1 [268 kB] 302s Get:350 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xopen all 1.0.0+dfsg-1 [18.9 kB] 302s Get:351 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcmdcheck all 1.4.0-2 [206 kB] 302s Get:352 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-remotes all 2.4.2.1+dfsg-2 [411 kB] 302s Get:353 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-roxygen2 amd64 7.3.1-1 [712 kB] 302s Get:354 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rversions all 2.1.2-1 [59.4 kB] 302s Get:355 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 302s Get:356 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 302s Get:357 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 302s Get:358 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 302s Get:359 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 302s Get:360 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-urlchecker all 1.0.1-2 [34.0 kB] 302s Get:361 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-devtools all 2.4.5-1 [676 kB] 302s Get:362 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dtplyr all 1.3.1-1 [364 kB] 302s Get:363 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gargle all 1.5.2-1 [737 kB] 302s Get:364 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-uuid amd64 1.2-0-1 [47.6 kB] 302s Get:365 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-googledrive all 2.1.1-1 [1224 kB] 302s Get:366 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ids all 1.0.1-2 [124 kB] 302s Get:367 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-googlesheets4 all 1.1.1-1 [520 kB] 302s Get:368 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-timechange amd64 0.3.0-1 [178 kB] 302s Get:369 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lubridate amd64 1.9.3+dfsg-1 [1010 kB] 302s Get:370 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-modelr all 0.1.11-1 [195 kB] 302s Get:371 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-readxl amd64 1.4.3-1 [736 kB] 302s Get:372 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-reprex all 2.1.0-1 [465 kB] 302s Get:373 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-selectr all 0.4-2-2build1 [416 kB] 302s Get:374 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rvest all 1.0.3-1 [208 kB] 302s Get:375 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyverse all 2.0.0+dfsg-1 [84.5 kB] 303s Preconfiguring packages ... 303s Fetched 399 MB in 4s (100 MB/s) 303s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 303s Removing pollinate (4.33-3.1ubuntu1) ... 304s Removing curl (8.5.0-2ubuntu2) ... 304s Removing libcurl4:amd64 (8.5.0-2ubuntu2) ... 304s dpkg: libpsl5:amd64: dependency problems, but removing anyway as you requested: 304s wget depends on libpsl5 (>= 0.16.0). 304s libcurl3-gnutls:amd64 depends on libpsl5 (>= 0.16.0). 304s 304s Removing libpsl5:amd64 (0.21.2-1build1) ... 304s Selecting previously unselected package libpsl5t64:amd64. 304s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71783 files and directories currently installed.) 304s Removing libssl3:amd64 (3.0.10-1ubuntu4) ... 304s Selecting previously unselected package libssl3t64:amd64. 304s (Reading database ... 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(0.26-3) ... 305s Selecting previously unselected package libmpc3:amd64. 305s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 305s Unpacking libmpc3:amd64 (1.3.1-1) ... 305s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 305s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 305s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 305s Selecting previously unselected package cpp-13. 305s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 305s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 305s Selecting previously unselected package cpp-x86-64-linux-gnu. 305s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 305s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 305s Selecting previously unselected package cpp. 305s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 305s Unpacking cpp (4:13.2.0-7ubuntu1) ... 305s Selecting previously unselected package libcc1-0:amd64. 305s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 305s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 305s Selecting previously unselected package libgomp1:amd64. 305s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 305s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 305s Selecting previously unselected package libitm1:amd64. 305s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 305s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 305s Selecting previously unselected package libatomic1:amd64. 305s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 305s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 305s Selecting previously unselected package libasan8:amd64. 305s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 305s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 305s Selecting previously unselected package liblsan0:amd64. 305s 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libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 307s Selecting previously unselected package fontconfig. 307s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 307s Unpacking fontconfig (2.15.0-1ubuntu1) ... 307s Selecting previously unselected package fonts-font-awesome. 307s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 307s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 307s Selecting previously unselected package fonts-glyphicons-halflings. 307s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 307s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 307s Selecting previously unselected package fonts-mathjax. 307s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 307s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 307s Selecting previously unselected package libgfortran5:amd64. 307s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 307s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 307s Selecting previously unselected package libgfortran-13-dev:amd64. 307s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 307s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 307s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 307s Preparing to unpack .../045-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 307s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 307s Selecting previously unselected package gfortran-13. 307s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 307s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 307s Selecting previously unselected package gfortran-x86-64-linux-gnu. 307s Preparing to unpack .../047-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 307s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 307s Selecting previously unselected package gfortran. 307s Preparing to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 307s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 307s Selecting previously unselected package icu-devtools. 307s Preparing to unpack .../049-icu-devtools_74.2-1ubuntu1_amd64.deb ... 307s Unpacking icu-devtools (74.2-1ubuntu1) ... 307s Selecting previously unselected package javascript-common. 307s Preparing to unpack .../050-javascript-common_11+nmu1_all.deb ... 307s Unpacking javascript-common (11+nmu1) ... 308s Selecting previously unselected package libblas3:amd64. 308s Preparing to unpack .../051-libblas3_3.12.0-3_amd64.deb ... 308s Unpacking libblas3:amd64 (3.12.0-3) ... 308s Selecting previously unselected package libblas-dev:amd64. 308s Preparing to unpack .../052-libblas-dev_3.12.0-3_amd64.deb ... 308s Unpacking libblas-dev:amd64 (3.12.0-3) ... 308s Selecting previously unselected package libboost1.83-dev:amd64. 308s Preparing to unpack .../053-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 308s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 310s Selecting previously unselected package libboost-dev:amd64. 310s Preparing to unpack .../054-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 310s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ... 310s Selecting previously unselected package libbz2-dev:amd64. 310s Preparing to unpack .../055-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 310s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 310s Selecting previously unselected package libpixman-1-0:amd64. 310s Preparing to unpack .../056-libpixman-1-0_0.42.2-1_amd64.deb ... 310s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 310s Selecting previously unselected package libxcb-render0:amd64. 310s Preparing to unpack .../057-libxcb-render0_1.15-1_amd64.deb ... 310s Unpacking libxcb-render0:amd64 (1.15-1) ... 310s Selecting previously unselected package libxcb-shm0:amd64. 310s Preparing to unpack .../058-libxcb-shm0_1.15-1_amd64.deb ... 310s Unpacking libxcb-shm0:amd64 (1.15-1) ... 310s Selecting previously unselected package libxrender1:amd64. 310s Preparing to unpack .../059-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 310s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 310s Selecting previously unselected package libcairo2:amd64. 310s Preparing to unpack .../060-libcairo2_1.18.0-1_amd64.deb ... 310s Unpacking libcairo2:amd64 (1.18.0-1) ... 310s Selecting previously unselected package libcurl4t64:amd64. 310s Preparing to unpack .../061-libcurl4t64_8.5.0-2ubuntu7_amd64.deb ... 310s Unpacking libcurl4t64:amd64 (8.5.0-2ubuntu7) ... 310s Selecting previously unselected package libdatrie1:amd64. 310s Preparing to unpack .../062-libdatrie1_0.2.13-3_amd64.deb ... 310s Unpacking libdatrie1:amd64 (0.2.13-3) ... 310s Selecting previously unselected package libdeflate0:amd64. 310s Preparing to unpack .../063-libdeflate0_1.19-1_amd64.deb ... 310s Unpacking libdeflate0:amd64 (1.19-1) ... 310s Selecting previously unselected package libhttp-parser2.9:amd64. 310s Preparing to unpack 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x11-common (1:7.7+23ubuntu2) ... 311s Selecting previously unselected package libice6:amd64. 311s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_amd64.deb ... 311s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 311s Selecting previously unselected package libicu-dev:amd64. 311s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_amd64.deb ... 311s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 311s Selecting previously unselected package libjpeg-turbo8:amd64. 311s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 311s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 311s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 311s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 311s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 311s Selecting previously unselected package libjpeg8:amd64. 311s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_amd64.deb ... 311s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 311s Selecting previously unselected package libjpeg8-dev:amd64. 311s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 311s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 311s Selecting previously unselected package libjpeg-dev:amd64. 311s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 311s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 311s Selecting previously unselected package libjs-bootstrap. 311s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 311s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 311s Selecting previously unselected package libjs-popper.js. 311s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 311s Unpacking libjs-popper.js (1.16.1+ds-6) ... 311s Selecting previously unselected package libjs-bootstrap4. 311s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 311s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 311s Selecting previously unselected package libjs-d3. 311s 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Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 314s Selecting previously unselected package libthai-data. 314s Preparing to unpack .../096-libthai-data_0.1.29-2_all.deb ... 314s Unpacking libthai-data (0.1.29-2) ... 314s Selecting previously unselected package libthai0:amd64. 314s Preparing to unpack .../097-libthai0_0.1.29-2_amd64.deb ... 314s Unpacking libthai0:amd64 (0.1.29-2) ... 314s Selecting previously unselected package libpango-1.0-0:amd64. 314s Preparing to unpack .../098-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 314s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 314s Selecting previously unselected package libpangoft2-1.0-0:amd64. 314s Preparing to unpack .../099-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 314s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 314s Selecting previously unselected package libpangocairo-1.0-0:amd64. 314s Preparing to unpack .../100-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 314s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 314s Selecting previously unselected package libpaper1:amd64. 314s Preparing to unpack .../101-libpaper1_1.1.29_amd64.deb ... 314s Unpacking libpaper1:amd64 (1.1.29) ... 314s Selecting previously unselected package libpaper-utils. 314s Preparing to unpack .../102-libpaper-utils_1.1.29_amd64.deb ... 314s Unpacking libpaper-utils (1.1.29) ... 314s Selecting previously unselected package libpcre2-16-0:amd64. 314s Preparing to unpack .../103-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 314s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 314s Selecting previously unselected package libpcre2-32-0:amd64. 314s Preparing to unpack .../104-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 314s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 314s Selecting previously unselected package libpcre2-posix3:amd64. 314s Preparing to unpack .../105-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 314s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 314s Selecting previously unselected package libpcre2-dev:amd64. 314s Preparing to unpack .../106-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 314s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 314s Selecting previously unselected package libpkgconf3:amd64. 314s Preparing to unpack .../107-libpkgconf3_1.8.1-2_amd64.deb ... 314s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 314s Selecting previously unselected package zlib1g-dev:amd64. 314s Preparing to unpack .../108-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 314s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 314s Selecting previously unselected package libpng-dev:amd64. 314s Preparing to unpack .../109-libpng-dev_1.6.43-1_amd64.deb ... 314s Unpacking libpng-dev:amd64 (1.6.43-1) ... 314s Selecting previously unselected package libreadline-dev:amd64. 314s Preparing to unpack .../110-libreadline-dev_8.2-3_amd64.deb ... 314s Unpacking libreadline-dev:amd64 (8.2-3) ... 314s Selecting previously unselected package libsharpyuv0:amd64. 314s Preparing to unpack .../111-libsharpyuv0_1.3.2-0.4_amd64.deb ... 314s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 314s Selecting previously unselected package libsm6:amd64. 314s Preparing to unpack .../112-libsm6_2%3a1.2.3-1build2_amd64.deb ... 314s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 314s Selecting previously unselected package libtcl8.6:amd64. 314s Preparing to unpack .../113-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 314s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 314s Selecting previously unselected package libjbig0:amd64. 314s Preparing to unpack .../114-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 314s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 314s Selecting previously unselected package libwebp7:amd64. 314s Preparing to unpack .../115-libwebp7_1.3.2-0.4_amd64.deb ... 314s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 314s Selecting previously unselected package libtiff6:amd64. 314s Preparing to unpack .../116-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 314s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 314s Selecting previously unselected package libxft2:amd64. 314s Preparing to unpack .../117-libxft2_2.3.6-1_amd64.deb ... 314s Unpacking libxft2:amd64 (2.3.6-1) ... 314s Selecting previously unselected package libxss1:amd64. 314s Preparing to unpack .../118-libxss1_1%3a1.2.3-1build2_amd64.deb ... 314s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 314s Selecting previously unselected package libtk8.6:amd64. 314s Preparing to unpack .../119-libtk8.6_8.6.13-2_amd64.deb ... 314s Unpacking libtk8.6:amd64 (8.6.13-2) ... 314s Selecting previously unselected package libxt6:amd64. 314s Preparing to unpack .../120-libxt6_1%3a1.2.1-1.1_amd64.deb ... 314s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 314s Selecting previously unselected package node-bootstrap-sass. 314s Preparing to unpack .../121-node-bootstrap-sass_3.4.3-2_all.deb ... 314s Unpacking node-bootstrap-sass (3.4.3-2) ... 314s Selecting previously unselected package node-html5shiv. 314s Preparing to unpack .../122-node-html5shiv_3.7.3+dfsg-5_all.deb ... 314s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 314s Selecting previously unselected package node-normalize.css. 314s Preparing to unpack .../123-node-normalize.css_8.0.1-5_all.deb ... 314s Unpacking node-normalize.css (8.0.1-5) ... 314s Selecting previously unselected package pandoc-data. 314s Preparing to unpack .../124-pandoc-data_3.1.3-1_all.deb ... 314s Unpacking pandoc-data (3.1.3-1) ... 314s Selecting previously unselected package pandoc. 314s Preparing to unpack .../125-pandoc_3.1.3+ds-2_amd64.deb ... 314s Unpacking pandoc (3.1.3+ds-2) ... 314s Selecting previously unselected package pkgconf-bin. 314s Preparing to unpack .../126-pkgconf-bin_1.8.1-2_amd64.deb ... 314s Unpacking pkgconf-bin (1.8.1-2) ... 314s Selecting previously unselected package pkgconf:amd64. 314s Preparing to unpack .../127-pkgconf_1.8.1-2_amd64.deb ... 314s Unpacking pkgconf:amd64 (1.8.1-2) ... 314s Selecting previously unselected package pkg-config:amd64. 314s Preparing to unpack .../128-pkg-config_1.8.1-2_amd64.deb ... 314s Unpacking pkg-config:amd64 (1.8.1-2) ... 314s Selecting previously unselected package zip. 314s Preparing to unpack .../129-zip_3.0-13_amd64.deb ... 314s Unpacking zip (3.0-13) ... 314s Selecting previously unselected package unzip. 314s Preparing to unpack .../130-unzip_6.0-28ubuntu3_amd64.deb ... 314s Unpacking unzip (6.0-28ubuntu3) ... 314s Selecting previously unselected package xdg-utils. 314s Preparing to unpack .../131-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 314s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 314s Selecting previously unselected package r-base-core. 314s Preparing to unpack .../132-r-base-core_4.3.2-1build1_amd64.deb ... 314s Unpacking r-base-core (4.3.2-1build1) ... 315s Selecting previously unselected package liblzma-dev:amd64. 315s Preparing to unpack .../133-liblzma-dev_5.4.5-0.3_amd64.deb ... 315s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 315s Selecting previously unselected package r-base-dev. 315s Preparing to unpack .../134-r-base-dev_4.3.2-1build1_all.deb ... 315s Unpacking r-base-dev (4.3.2-1build1) ... 315s Selecting previously unselected package pkg-r-autopkgtest. 315s Preparing to unpack .../135-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 315s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 315s Selecting previously unselected package r-bioc-biocgenerics. 315s Preparing to unpack .../136-r-bioc-biocgenerics_0.48.1-2_all.deb ... 315s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 315s Selecting previously unselected package r-bioc-biobase. 315s Preparing to unpack .../137-r-bioc-biobase_2.62.0-1_amd64.deb ... 315s Unpacking r-bioc-biobase (2.62.0-1) ... 315s Selecting previously unselected package r-bioc-s4vectors. 315s Preparing to unpack .../138-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 315s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 315s Selecting previously unselected package r-bioc-iranges. 315s Preparing to unpack .../139-r-bioc-iranges_2.36.0-1_amd64.deb ... 315s Unpacking r-bioc-iranges (2.36.0-1) ... 315s Selecting previously unselected package r-cran-dbi. 315s Preparing to unpack .../140-r-cran-dbi_1.2.2-1_all.deb ... 315s Unpacking r-cran-dbi (1.2.2-1) ... 315s Selecting previously unselected package r-cran-bit. 315s Preparing to unpack .../141-r-cran-bit_4.0.5-1_amd64.deb ... 315s Unpacking r-cran-bit (4.0.5-1) ... 315s Selecting previously unselected package r-cran-bit64. 315s Preparing to unpack .../142-r-cran-bit64_4.0.5-1_amd64.deb ... 315s Unpacking r-cran-bit64 (4.0.5-1) ... 315s Selecting previously unselected package r-cran-rlang. 315s Preparing to unpack .../143-r-cran-rlang_1.1.3-1_amd64.deb ... 315s Unpacking r-cran-rlang (1.1.3-1) ... 315s Selecting previously unselected package r-cran-cli. 315s Preparing to unpack .../144-r-cran-cli_3.6.2-1_amd64.deb ... 315s Unpacking r-cran-cli (3.6.2-1) ... 315s Selecting previously unselected package r-cran-glue. 315s Preparing to unpack .../145-r-cran-glue_1.7.0-1_amd64.deb ... 315s Unpacking r-cran-glue (1.7.0-1) ... 315s Selecting previously unselected package r-cran-lifecycle. 315s Preparing to unpack .../146-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 315s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 315s Selecting previously unselected package r-cran-vctrs. 315s Preparing to unpack .../147-r-cran-vctrs_0.6.5-1_amd64.deb ... 315s Unpacking r-cran-vctrs (0.6.5-1) ... 316s Selecting previously unselected package r-cran-blob. 316s Preparing to unpack .../148-r-cran-blob_1.2.4-1_all.deb ... 316s Unpacking r-cran-blob (1.2.4-1) ... 316s Selecting previously unselected package r-cran-fastmap. 316s Preparing to unpack .../149-r-cran-fastmap_1.1.1-1_amd64.deb ... 316s Unpacking r-cran-fastmap (1.1.1-1) ... 316s Selecting previously unselected package r-cran-cachem. 316s Preparing to unpack .../150-r-cran-cachem_1.0.8-1_amd64.deb ... 316s Unpacking r-cran-cachem (1.0.8-1) ... 316s Selecting previously unselected package r-cran-memoise. 316s Preparing to unpack .../151-r-cran-memoise_2.0.1-1_all.deb ... 316s Unpacking r-cran-memoise (2.0.1-1) ... 316s Selecting previously unselected package r-cran-pkgconfig. 316s Preparing to unpack .../152-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 316s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 316s Selecting previously unselected package r-cran-plogr. 316s Preparing to unpack .../153-r-cran-plogr_0.2.0-3build1_all.deb ... 316s Unpacking r-cran-plogr (0.2.0-3build1) ... 316s Selecting previously unselected package r-cran-cpp11. 316s Preparing to unpack .../154-r-cran-cpp11_0.4.7-1_all.deb ... 316s Unpacking r-cran-cpp11 (0.4.7-1) ... 316s Selecting previously unselected package r-cran-rsqlite. 316s Preparing to unpack .../155-r-cran-rsqlite_2.3.4-1_amd64.deb ... 316s Unpacking r-cran-rsqlite (2.3.4-1) ... 316s Selecting previously unselected package r-cran-curl. 316s Preparing to unpack .../156-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 316s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 316s Selecting previously unselected package r-cran-jsonlite. 316s Preparing to unpack .../157-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 316s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 316s Selecting previously unselected package r-cran-mime. 316s Preparing to unpack .../158-r-cran-mime_0.12-1_amd64.deb ... 316s Unpacking r-cran-mime (0.12-1) ... 316s Selecting previously unselected package r-cran-sys. 316s Preparing to unpack .../159-r-cran-sys_3.4.2-1_amd64.deb ... 316s Unpacking r-cran-sys (3.4.2-1) ... 316s Selecting previously unselected package r-cran-askpass. 316s Preparing to unpack .../160-r-cran-askpass_1.2.0-1_amd64.deb ... 316s Unpacking r-cran-askpass (1.2.0-1) ... 316s Selecting previously unselected package r-cran-openssl. 316s Preparing to unpack .../161-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 316s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 316s Selecting previously unselected package r-cran-r6. 316s Preparing to unpack .../162-r-cran-r6_2.5.1-1_all.deb ... 316s Unpacking r-cran-r6 (2.5.1-1) ... 316s Selecting previously unselected package r-cran-httr. 316s Preparing to unpack .../163-r-cran-httr_1.4.7+dfsg-1_all.deb ... 316s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 316s Selecting previously unselected package r-cran-png. 316s Preparing to unpack .../164-r-cran-png_0.1-8-1_amd64.deb ... 316s Unpacking r-cran-png (0.1-8-1) ... 316s Selecting previously unselected package r-bioc-zlibbioc. 316s Preparing to unpack .../165-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 316s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 316s Selecting previously unselected package r-bioc-xvector. 316s Preparing to unpack .../166-r-bioc-xvector_0.42.0-1_amd64.deb ... 316s Unpacking r-bioc-xvector (0.42.0-1) ... 316s Selecting previously unselected package r-cran-bitops. 316s Preparing to unpack .../167-r-cran-bitops_1.0-7-1_amd64.deb ... 316s Unpacking r-cran-bitops (1.0-7-1) ... 316s Selecting previously unselected package r-cran-rcurl. 316s Preparing to unpack .../168-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 316s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 316s Selecting previously unselected package r-bioc-genomeinfodbdata. 316s Preparing to unpack .../169-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 316s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 316s Selecting previously unselected package r-bioc-genomeinfodb. 316s Preparing to unpack .../170-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 316s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 316s Selecting previously unselected package r-cran-crayon. 316s Preparing to unpack .../171-r-cran-crayon_1.5.2-1_all.deb ... 316s Unpacking r-cran-crayon (1.5.2-1) ... 316s Selecting previously unselected package r-bioc-biostrings. 316s Preparing to unpack .../172-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 316s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 317s Selecting previously unselected package r-bioc-keggrest. 317s Preparing to unpack .../173-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 317s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 317s Selecting previously unselected package r-bioc-annotationdbi. 317s Preparing to unpack .../174-r-bioc-annotationdbi_1.64.1-1_all.deb ... 317s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 317s Selecting previously unselected package r-bioc-genomicranges. 317s Preparing to unpack .../175-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 317s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 317s Selecting previously unselected package r-cran-lazyeval. 317s Preparing to unpack .../176-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 317s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 317s Selecting previously unselected package r-bioc-annotationfilter. 317s Preparing to unpack .../177-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 317s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 317s Selecting previously unselected package r-cran-generics. 317s Preparing to unpack .../178-r-cran-generics_0.1.3-1_all.deb ... 317s Unpacking r-cran-generics (0.1.3-1) ... 317s Selecting previously unselected package r-cran-magrittr. 317s Preparing to unpack .../179-r-cran-magrittr_2.0.3-1_amd64.deb ... 317s Unpacking r-cran-magrittr (2.0.3-1) ... 317s Selecting previously unselected package r-cran-fansi. 317s Preparing to unpack .../180-r-cran-fansi_1.0.5-1_amd64.deb ... 317s Unpacking r-cran-fansi (1.0.5-1) ... 317s Selecting previously unselected package r-cran-utf8. 317s Preparing to unpack .../181-r-cran-utf8_1.2.4-1_amd64.deb ... 317s Unpacking r-cran-utf8 (1.2.4-1) ... 317s Selecting previously unselected package r-cran-pillar. 317s Preparing to unpack .../182-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 317s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 317s Selecting previously unselected package r-cran-tibble. 317s Preparing to unpack .../183-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 317s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 317s Selecting previously unselected package r-cran-withr. 317s Preparing to unpack .../184-r-cran-withr_2.5.0-1_all.deb ... 317s Unpacking r-cran-withr (2.5.0-1) ... 317s Selecting previously unselected package r-cran-tidyselect. 317s Preparing to unpack .../185-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 317s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 317s Selecting previously unselected package r-cran-dplyr. 317s Preparing to unpack .../186-r-cran-dplyr_1.1.4-1_amd64.deb ... 317s Unpacking r-cran-dplyr (1.1.4-1) ... 317s Selecting previously unselected package r-cran-purrr. 317s Preparing to unpack .../187-r-cran-purrr_1.0.2-1_amd64.deb ... 317s Unpacking r-cran-purrr (1.0.2-1) ... 317s Selecting previously unselected package r-cran-stringi. 317s Preparing to unpack .../188-r-cran-stringi_1.8.3-1_amd64.deb ... 317s Unpacking r-cran-stringi (1.8.3-1) ... 317s Selecting previously unselected package r-cran-stringr. 317s Preparing to unpack .../189-r-cran-stringr_1.5.1-1_all.deb ... 317s Unpacking r-cran-stringr (1.5.1-1) ... 317s Selecting previously unselected package r-cran-tidyr. 317s Preparing to unpack .../190-r-cran-tidyr_1.3.1-1_amd64.deb ... 317s Unpacking r-cran-tidyr (1.3.1-1) ... 317s Selecting previously unselected package r-cran-dbplyr. 318s Preparing to unpack .../191-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 318s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 318s Selecting previously unselected package r-cran-filelock. 318s Preparing to unpack .../192-r-cran-filelock_1.0.3-1_amd64.deb ... 318s Unpacking r-cran-filelock (1.0.3-1) ... 318s Selecting previously unselected package r-bioc-biocfilecache. 318s Preparing to unpack .../193-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 318s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 318s Selecting previously unselected package r-bioc-biocio. 318s Preparing to unpack .../194-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 318s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 318s Selecting previously unselected package r-cran-formatr. 318s Preparing to unpack .../195-r-cran-formatr_1.14-1_all.deb ... 318s Unpacking r-cran-formatr (1.14-1) ... 318s Selecting previously unselected package r-cran-lambda.r. 318s Preparing to unpack .../196-r-cran-lambda.r_1.2.4-2build1_all.deb ... 318s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 318s Selecting previously unselected package r-cran-futile.options. 318s Preparing to unpack .../197-r-cran-futile.options_1.0.1-3build1_all.deb ... 318s Unpacking r-cran-futile.options (1.0.1-3build1) ... 318s Selecting previously unselected package r-cran-futile.logger. 318s Preparing to unpack .../198-r-cran-futile.logger_1.4.3-4build1_all.deb ... 318s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 318s Selecting previously unselected package r-cran-snow. 318s Preparing to unpack .../199-r-cran-snow_1%3a0.4.4-2_all.deb ... 318s Unpacking r-cran-snow (1:0.4.4-2) ... 318s Selecting previously unselected package r-cran-codetools. 318s Preparing to unpack .../200-r-cran-codetools_0.2-19-1_all.deb ... 318s Unpacking r-cran-codetools (0.2-19-1) ... 318s Selecting previously unselected package r-cran-bh. 318s Preparing to unpack .../201-r-cran-bh_1.84.0-1_all.deb ... 318s Unpacking r-cran-bh (1.84.0-1) ... 318s Selecting previously unselected package r-bioc-biocparallel. 318s Preparing to unpack .../202-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 318s Unpacking r-bioc-biocparallel (1.36.0-1) ... 318s Selecting previously unselected package r-cran-xml. 318s Preparing to unpack .../203-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 318s Unpacking r-cran-xml (3.99-0.16.1-1) ... 318s Selecting previously unselected package r-cran-hms. 318s Preparing to unpack .../204-r-cran-hms_1.1.3-1_all.deb ... 318s Unpacking r-cran-hms (1.1.3-1) ... 318s Selecting previously unselected package r-cran-prettyunits. 318s Preparing to unpack .../205-r-cran-prettyunits_1.2.0-1_all.deb ... 318s Unpacking r-cran-prettyunits (1.2.0-1) ... 318s Selecting previously unselected package r-cran-progress. 318s Preparing to unpack .../206-r-cran-progress_1.2.3-1_all.deb ... 318s Unpacking r-cran-progress (1.2.3-1) ... 318s Selecting previously unselected package r-cran-digest. 318s Preparing to unpack .../207-r-cran-digest_0.6.34-1_amd64.deb ... 318s Unpacking r-cran-digest (0.6.34-1) ... 318s Selecting previously unselected package r-cran-rappdirs. 318s Preparing to unpack .../208-r-cran-rappdirs_0.3.3-1_amd64.deb ... 318s Unpacking r-cran-rappdirs (0.3.3-1) ... 318s Selecting previously unselected package r-cran-xml2. 318s Preparing to unpack .../209-r-cran-xml2_1.3.6-1_amd64.deb ... 318s Unpacking r-cran-xml2 (1.3.6-1) ... 318s Selecting previously unselected package r-bioc-biomart. 318s Preparing to unpack .../210-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 318s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 318s Selecting previously unselected package r-cran-farver. 318s Preparing to unpack .../211-r-cran-farver_2.1.1-1_amd64.deb ... 318s Unpacking r-cran-farver (2.1.1-1) ... 318s Selecting previously unselected package r-cran-labeling. 318s Preparing to unpack .../212-r-cran-labeling_0.4.3-1_all.deb ... 318s Unpacking r-cran-labeling (0.4.3-1) ... 318s Selecting previously unselected package r-cran-colorspace. 318s Preparing to unpack .../213-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 318s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 318s Selecting previously unselected package r-cran-munsell. 318s Preparing to unpack .../214-r-cran-munsell_0.5.0-2build1_all.deb ... 318s Unpacking r-cran-munsell (0.5.0-2build1) ... 319s Selecting previously unselected package r-cran-rcolorbrewer. 319s Preparing to unpack .../215-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 319s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 319s Selecting previously unselected package r-cran-viridislite. 319s Preparing to unpack .../216-r-cran-viridislite_0.4.2-2_all.deb ... 319s Unpacking r-cran-viridislite (0.4.2-2) ... 319s Selecting previously unselected package r-cran-scales. 319s Preparing to unpack .../217-r-cran-scales_1.3.0-1_all.deb ... 319s Unpacking r-cran-scales (1.3.0-1) ... 319s Selecting previously unselected package r-cran-gtable. 319s Preparing to unpack .../218-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 319s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 319s Selecting previously unselected package r-cran-isoband. 319s Preparing to unpack .../219-r-cran-isoband_0.2.7-1_amd64.deb ... 319s Unpacking r-cran-isoband (0.2.7-1) ... 319s Selecting previously unselected package r-cran-mass. 319s Preparing to unpack .../220-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 319s Unpacking r-cran-mass (7.3-60.0.1-1) ... 319s Selecting previously unselected package r-cran-lattice. 319s Preparing to unpack .../221-r-cran-lattice_0.22-5-1_amd64.deb ... 319s Unpacking r-cran-lattice (0.22-5-1) ... 319s Selecting previously unselected package r-cran-nlme. 319s Preparing to unpack .../222-r-cran-nlme_3.1.164-1_amd64.deb ... 319s Unpacking r-cran-nlme (3.1.164-1) ... 319s Selecting previously unselected package r-cran-matrix. 319s Preparing to unpack .../223-r-cran-matrix_1.6-5-1_amd64.deb ... 319s Unpacking r-cran-matrix (1.6-5-1) ... 319s Selecting previously unselected package r-cran-mgcv. 319s Preparing to unpack .../224-r-cran-mgcv_1.9-1-1_amd64.deb ... 319s Unpacking r-cran-mgcv (1.9-1-1) ... 319s Selecting previously unselected package r-cran-ggplot2. 319s Preparing to unpack .../225-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 319s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 319s Selecting previously unselected package r-cran-cluster. 319s Preparing to unpack .../226-r-cran-cluster_2.1.6-1_amd64.deb ... 319s Unpacking r-cran-cluster (2.1.6-1) ... 319s Selecting previously unselected package r-cran-survival. 319s Preparing to unpack .../227-r-cran-survival_3.5-8-1_amd64.deb ... 319s Unpacking r-cran-survival (3.5-8-1) ... 319s Selecting previously unselected package r-cran-rpart. 319s Preparing to unpack .../228-r-cran-rpart_4.1.23-1_amd64.deb ... 319s Unpacking r-cran-rpart (4.1.23-1) ... 319s Selecting previously unselected package r-cran-nnet. 319s Preparing to unpack .../229-r-cran-nnet_7.3-19-2_amd64.deb ... 319s Unpacking r-cran-nnet (7.3-19-2) ... 319s Selecting previously unselected package r-cran-foreign. 319s Preparing to unpack .../230-r-cran-foreign_0.8.86-1_amd64.deb ... 319s Unpacking r-cran-foreign (0.8.86-1) ... 319s Selecting previously unselected package r-cran-gridextra. 319s Preparing to unpack .../231-r-cran-gridextra_2.3-3build1_all.deb ... 319s Unpacking r-cran-gridextra (2.3-3build1) ... 320s Selecting previously unselected package r-cran-data.table. 320s Preparing to unpack .../232-r-cran-data.table_1.14.10+dfsg-1_amd64.deb ... 320s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 320s Selecting previously unselected package r-cran-evaluate. 320s Preparing to unpack .../233-r-cran-evaluate_0.23-1_all.deb ... 320s Unpacking r-cran-evaluate (0.23-1) ... 320s Selecting previously unselected package r-cran-xfun. 320s Preparing to unpack .../234-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 320s Unpacking r-cran-xfun (0.41+dfsg-1) ... 320s Selecting previously unselected package r-cran-highr. 320s Preparing to unpack .../235-r-cran-highr_0.10+dfsg-1_all.deb ... 320s Unpacking r-cran-highr (0.10+dfsg-1) ... 320s Selecting previously unselected package r-cran-yaml. 320s Preparing to unpack .../236-r-cran-yaml_2.3.8-1_amd64.deb ... 320s Unpacking r-cran-yaml (2.3.8-1) ... 320s Selecting previously unselected package libjs-mathjax. 320s Preparing to unpack .../237-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 320s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 321s Selecting previously unselected package r-cran-knitr. 321s Preparing to unpack .../238-r-cran-knitr_1.45+dfsg-1_all.deb ... 321s Unpacking r-cran-knitr (1.45+dfsg-1) ... 321s Selecting previously unselected package r-cran-backports. 321s Preparing to unpack .../239-r-cran-backports_1.4.1-1_amd64.deb ... 321s Unpacking r-cran-backports (1.4.1-1) ... 321s Selecting previously unselected package r-cran-checkmate. 321s Preparing to unpack .../240-r-cran-checkmate_2.3.1-1_amd64.deb ... 321s Unpacking r-cran-checkmate (2.3.1-1) ... 321s Selecting previously unselected package r-cran-base64enc. 321s Preparing to unpack .../241-r-cran-base64enc_0.1-3-3_amd64.deb ... 321s Unpacking r-cran-base64enc (0.1-3-3) ... 321s Selecting previously unselected package r-cran-ellipsis. 321s Preparing to unpack .../242-r-cran-ellipsis_0.3.2-2_amd64.deb ... 321s Unpacking r-cran-ellipsis (0.3.2-2) ... 321s Selecting previously unselected package r-cran-htmltools. 321s Preparing to unpack .../243-r-cran-htmltools_0.5.7-1_amd64.deb ... 321s Unpacking r-cran-htmltools (0.5.7-1) ... 321s Selecting previously unselected package r-cran-jquerylib. 321s Preparing to unpack .../244-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 321s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 321s Selecting previously unselected package r-cran-fs. 321s Preparing to unpack .../245-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 321s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 321s Selecting previously unselected package r-cran-sass. 321s Preparing to unpack .../246-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 321s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 321s Selecting previously unselected package r-cran-bslib. 321s Preparing to unpack .../247-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 321s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 321s Selecting previously unselected package r-cran-fontawesome. 321s Preparing to unpack .../248-r-cran-fontawesome_0.5.2-1_all.deb ... 321s Unpacking r-cran-fontawesome (0.5.2-1) ... 321s Selecting previously unselected package r-cran-tinytex. 321s Preparing to unpack .../249-r-cran-tinytex_0.49-1_all.deb ... 321s Unpacking r-cran-tinytex (0.49-1) ... 321s Selecting previously unselected package libjs-modernizr. 321s Preparing to unpack .../250-libjs-modernizr_2.6.2+ds1-5_all.deb ... 321s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 321s Selecting previously unselected package r-cran-littler. 321s Preparing to unpack .../251-r-cran-littler_0.3.19-1_amd64.deb ... 321s Unpacking r-cran-littler (0.3.19-1) ... 321s Selecting previously unselected package r-cran-pkgkitten. 321s Preparing to unpack .../252-r-cran-pkgkitten_0.2.3-1_all.deb ... 321s Unpacking r-cran-pkgkitten (0.2.3-1) ... 321s Selecting previously unselected package r-cran-rcpp. 321s Preparing to unpack .../253-r-cran-rcpp_1.0.12-1_amd64.deb ... 321s Unpacking r-cran-rcpp (1.0.12-1) ... 322s Selecting previously unselected package r-cran-later. 322s Preparing to unpack .../254-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 322s Unpacking r-cran-later (1.3.2+dfsg-1) ... 322s Selecting previously unselected package r-cran-promises. 322s Preparing to unpack .../255-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 322s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 322s Selecting previously unselected package r-cran-httpuv. 322s Preparing to unpack .../256-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 322s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 322s Selecting previously unselected package r-cran-xtable. 322s Preparing to unpack .../257-r-cran-xtable_1%3a1.8-4-2_all.deb ... 322s Unpacking r-cran-xtable (1:1.8-4-2) ... 322s Selecting previously unselected package r-cran-sourcetools. 322s Preparing to unpack .../258-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 322s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 322s Selecting previously unselected package r-cran-commonmark. 322s Preparing to unpack .../259-r-cran-commonmark_1.9.1-1_amd64.deb ... 322s Unpacking r-cran-commonmark (1.9.1-1) ... 322s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 322s Preparing to unpack .../260-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 322s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 322s Selecting previously unselected package r-cran-shiny. 322s Preparing to unpack .../261-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 322s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 322s Selecting previously unselected package r-cran-rmarkdown. 322s Preparing to unpack .../262-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 322s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 322s Selecting previously unselected package r-cran-htmlwidgets. 322s Preparing to unpack .../263-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 322s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 322s Selecting previously unselected package r-cran-rstudioapi. 322s Preparing to unpack .../264-r-cran-rstudioapi_0.15.0-1_all.deb ... 322s Unpacking r-cran-rstudioapi (0.15.0-1) ... 322s Selecting previously unselected package r-cran-htmltable. 322s Preparing to unpack .../265-r-cran-htmltable_2.4.2-1_all.deb ... 322s Unpacking r-cran-htmltable (2.4.2-1) ... 322s Selecting previously unselected package r-cran-viridis. 322s Preparing to unpack .../266-r-cran-viridis_0.6.5-1_all.deb ... 322s Unpacking r-cran-viridis (0.6.5-1) ... 322s Selecting previously unselected package r-cran-formula. 322s Preparing to unpack .../267-r-cran-formula_1.2-5-1_all.deb ... 322s Unpacking r-cran-formula (1.2-5-1) ... 322s Selecting previously unselected package r-cran-chron. 322s Preparing to unpack .../268-r-cran-chron_2.3-61-2_amd64.deb ... 322s Unpacking r-cran-chron (2.3-61-2) ... 322s Selecting previously unselected package r-cran-jpeg. 322s Preparing to unpack .../269-r-cran-jpeg_0.1-10-1_amd64.deb ... 322s Unpacking r-cran-jpeg (0.1-10-1) ... 322s Selecting previously unselected package r-cran-deldir. 322s Preparing to unpack .../270-r-cran-deldir_2.0-4-1_amd64.deb ... 322s Unpacking r-cran-deldir (2.0-4-1) ... 322s Selecting previously unselected package r-cran-rcppeigen. 322s Preparing to unpack .../271-r-cran-rcppeigen_0.3.3.9.4-1_amd64.deb ... 322s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 323s Selecting previously unselected package r-cran-interp. 323s Preparing to unpack .../272-r-cran-interp_1.1-6-1_amd64.deb ... 323s Unpacking r-cran-interp (1.1-6-1) ... 323s Selecting previously unselected package r-cran-latticeextra. 323s Preparing to unpack .../273-r-cran-latticeextra_0.6-30-1_all.deb ... 323s Unpacking r-cran-latticeextra (0.6-30-1) ... 323s Selecting previously unselected package r-cran-acepack. 323s Preparing to unpack .../274-r-cran-acepack_1.4.2-1_amd64.deb ... 323s Unpacking r-cran-acepack (1.4.2-1) ... 323s Selecting previously unselected package r-cran-hmisc. 323s Preparing to unpack .../275-r-cran-hmisc_5.1-1-1_amd64.deb ... 323s Unpacking r-cran-hmisc (5.1-1-1) ... 323s Selecting previously unselected package r-cran-dichromat. 323s Preparing to unpack .../276-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 323s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 323s Selecting previously unselected package r-cran-matrixstats. 323s Preparing to unpack .../277-r-cran-matrixstats_1.2.0-1_amd64.deb ... 323s Unpacking r-cran-matrixstats (1.2.0-1) ... 323s Selecting previously unselected package r-bioc-matrixgenerics. 323s Preparing to unpack .../278-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 323s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 323s Selecting previously unselected package r-cran-abind. 323s Preparing to unpack .../279-r-cran-abind_1.4-5-2_all.deb ... 323s Unpacking r-cran-abind (1.4-5-2) ... 323s Selecting previously unselected package r-bioc-s4arrays. 323s Preparing to unpack .../280-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 323s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 323s Selecting previously unselected package r-bioc-sparsearray. 323s Preparing to unpack .../281-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 323s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 323s Selecting previously unselected package r-bioc-delayedarray. 323s Preparing to unpack .../282-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 323s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 323s Selecting previously unselected package r-bioc-summarizedexperiment. 323s Preparing to unpack .../283-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 323s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 323s Selecting previously unselected package r-bioc-rhtslib. 323s Preparing to unpack .../284-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 323s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 323s Selecting previously unselected package r-bioc-rsamtools. 323s Preparing to unpack .../285-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 323s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 323s Selecting previously unselected package r-bioc-genomicalignments. 323s Preparing to unpack .../286-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 323s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 323s Selecting previously unselected package r-cran-rjson. 323s Preparing to unpack .../287-r-cran-rjson_0.2.21-1_amd64.deb ... 323s Unpacking r-cran-rjson (0.2.21-1) ... 323s Selecting previously unselected package r-cran-restfulr. 323s Preparing to unpack .../288-r-cran-restfulr_0.0.15-1_amd64.deb ... 323s Unpacking r-cran-restfulr (0.0.15-1) ... 323s Selecting previously unselected package r-bioc-rtracklayer. 323s Preparing to unpack .../289-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 323s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 324s Selecting previously unselected package r-bioc-genomicfeatures. 324s Preparing to unpack .../290-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 324s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 324s Selecting previously unselected package r-bioc-bsgenome. 324s Preparing to unpack .../291-r-bioc-bsgenome_1.70.2-1_all.deb ... 324s Unpacking r-bioc-bsgenome (1.70.2-1) ... 324s Selecting previously unselected package r-bioc-variantannotation. 324s Preparing to unpack .../292-r-bioc-variantannotation_1.48.1-1build1_amd64.deb ... 324s Unpacking r-bioc-variantannotation (1.48.1-1build1) ... 324s Selecting previously unselected package r-bioc-protgenerics. 324s Preparing to unpack .../293-r-bioc-protgenerics_1.34.0-1_all.deb ... 324s Unpacking r-bioc-protgenerics (1.34.0-1) ... 324s Selecting previously unselected package r-bioc-ensembldb. 324s Preparing to unpack .../294-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 324s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 324s Selecting previously unselected package r-bioc-biovizbase. 324s Preparing to unpack .../295-r-bioc-biovizbase_1.50.0-1_amd64.deb ... 324s Unpacking r-bioc-biovizbase (1.50.0-1) ... 324s Selecting previously unselected package r-cran-plyr. 324s Preparing to unpack .../296-r-cran-plyr_1.8.9-1_amd64.deb ... 324s Unpacking r-cran-plyr (1.8.9-1) ... 324s Selecting previously unselected package r-cran-reshape2. 324s Preparing to unpack .../297-r-cran-reshape2_1.4.4-2build1_amd64.deb ... 324s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 324s Selecting previously unselected package r-cran-biocmanager. 324s Preparing to unpack .../298-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 324s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 324s Selecting previously unselected package r-bioc-graph. 324s Preparing to unpack .../299-r-bioc-graph_1.80.0-1_amd64.deb ... 324s Unpacking r-bioc-graph (1.80.0-1) ... 324s Selecting previously unselected package r-bioc-rbgl. 324s Preparing to unpack .../300-r-bioc-rbgl_1.78.0+dfsg-1_amd64.deb ... 324s Unpacking r-bioc-rbgl (1.78.0+dfsg-1) ... 324s Selecting previously unselected package r-bioc-organismdbi. 324s Preparing to unpack .../301-r-bioc-organismdbi_1.44.0+dfsg-1_all.deb ... 324s Unpacking r-bioc-organismdbi (1.44.0+dfsg-1) ... 324s Selecting previously unselected package r-cran-broom. 324s Preparing to unpack .../302-r-cran-broom_1.0.5+dfsg-1_all.deb ... 324s Unpacking r-cran-broom (1.0.5+dfsg-1) ... 324s Selecting previously unselected package r-cran-forcats. 324s Preparing to unpack .../303-r-cran-forcats_1.0.0-1_all.deb ... 324s Unpacking r-cran-forcats (1.0.0-1) ... 324s Selecting previously unselected package r-cran-clipr. 324s Preparing to unpack .../304-r-cran-clipr_0.8.0-1_all.deb ... 324s Unpacking r-cran-clipr (0.8.0-1) ... 324s Selecting previously unselected package r-cran-tzdb. 324s Preparing to unpack .../305-r-cran-tzdb_0.4.0-2_amd64.deb ... 324s Unpacking r-cran-tzdb (0.4.0-2) ... 324s Selecting previously unselected package r-cran-vroom. 324s Preparing to unpack .../306-r-cran-vroom_1.6.5-1_amd64.deb ... 324s Unpacking r-cran-vroom (1.6.5-1) ... 324s Selecting previously unselected package r-cran-readr. 325s Preparing to unpack .../307-r-cran-readr_2.1.5-1_amd64.deb ... 325s Unpacking r-cran-readr (2.1.5-1) ... 325s Selecting previously unselected package r-cran-haven. 325s Preparing to unpack .../308-r-cran-haven_2.5.4-1_amd64.deb ... 325s Unpacking r-cran-haven (2.5.4-1) ... 325s Selecting previously unselected package r-cran-labelled. 325s Preparing to unpack .../309-r-cran-labelled_2.12.0-2_all.deb ... 325s Unpacking r-cran-labelled (2.12.0-2) ... 325s Selecting previously unselected package r-cran-broom.helpers. 325s Preparing to unpack .../310-r-cran-broom.helpers_1.14.0-2_all.deb ... 325s Unpacking r-cran-broom.helpers (1.14.0-2) ... 325s Selecting previously unselected package r-cran-patchwork. 325s Preparing to unpack .../311-r-cran-patchwork_1.2.0-1_all.deb ... 325s Unpacking r-cran-patchwork (1.2.0-1) ... 325s Selecting previously unselected package r-cran-ggstats. 325s Preparing to unpack .../312-r-cran-ggstats_0.5.1-2_all.deb ... 325s Unpacking r-cran-ggstats (0.5.1-2) ... 325s Selecting previously unselected package r-cran-ggally. 325s Preparing to unpack .../313-r-cran-ggally_2.2.1-1_all.deb ... 325s Unpacking r-cran-ggally (2.2.1-1) ... 325s Selecting previously unselected package r-bioc-ggbio. 325s Preparing to unpack .../314-r-bioc-ggbio_1.50.0-1_all.deb ... 325s Unpacking r-bioc-ggbio (1.50.0-1) ... 325s Selecting previously unselected package r-cran-assertthat. 325s Preparing to unpack .../315-r-cran-assertthat_0.2.1-2build1_all.deb ... 325s Unpacking r-cran-assertthat (0.2.1-2build1) ... 325s Selecting previously unselected package r-bioc-structuralvariantannotation. 325s Preparing to unpack .../316-r-bioc-structuralvariantannotation_1.18.0+ds-1_all.deb ... 325s Unpacking r-bioc-structuralvariantannotation (1.18.0+ds-1) ... 325s Selecting previously unselected package r-cran-brew. 325s Preparing to unpack .../317-r-cran-brew_1.0-10-1_all.deb ... 325s Unpacking r-cran-brew (1.0-10-1) ... 325s Selecting previously unselected package r-cran-brio. 325s Preparing to unpack .../318-r-cran-brio_1.1.4-1_amd64.deb ... 325s Unpacking r-cran-brio (1.1.4-1) ... 325s Selecting previously unselected package r-cran-ps. 325s Preparing to unpack .../319-r-cran-ps_1.7.6-1_amd64.deb ... 325s Unpacking r-cran-ps (1.7.6-1) ... 325s Selecting previously unselected package r-cran-processx. 325s Preparing to unpack .../320-r-cran-processx_3.8.3-1_amd64.deb ... 325s Unpacking r-cran-processx (3.8.3-1) ... 325s Selecting previously unselected package r-cran-callr. 325s Preparing to unpack .../321-r-cran-callr_3.7.3-2_all.deb ... 325s Unpacking r-cran-callr (3.7.3-2) ... 325s Selecting previously unselected package r-cran-rematch. 325s Preparing to unpack .../322-r-cran-rematch_2.0.0-1_all.deb ... 325s Unpacking r-cran-rematch (2.0.0-1) ... 325s Selecting previously unselected package r-cran-cellranger. 325s Preparing to unpack .../323-r-cran-cellranger_1.1.0-3_all.deb ... 325s Unpacking r-cran-cellranger (1.1.0-3) ... 325s Selecting previously unselected package r-cran-conflicted. 325s Preparing to unpack .../324-r-cran-conflicted_1.2.0-1.1_all.deb ... 325s Unpacking r-cran-conflicted (1.2.0-1.1) ... 325s Selecting previously unselected package r-cran-credentials. 325s Preparing to unpack .../325-r-cran-credentials_2.0.1-1_all.deb ... 325s Unpacking r-cran-credentials (2.0.1-1) ... 325s Selecting previously unselected package r-cran-desc. 325s Preparing to unpack .../326-r-cran-desc_1.4.3-1_all.deb ... 325s Unpacking r-cran-desc (1.4.3-1) ... 325s Selecting previously unselected package r-cran-zip. 325s Preparing to unpack .../327-r-cran-zip_2.3.1-1_amd64.deb ... 325s Unpacking r-cran-zip (2.3.1-1) ... 325s Selecting previously unselected package r-cran-gert. 326s Preparing to unpack .../328-r-cran-gert_2.0.1+dfsg-1_amd64.deb ... 326s Unpacking r-cran-gert (2.0.1+dfsg-1) ... 326s Selecting previously unselected package r-cran-gitcreds. 326s Preparing to unpack .../329-r-cran-gitcreds_0.1.2-1_all.deb ... 326s Unpacking r-cran-gitcreds (0.1.2-1) ... 326s Selecting previously unselected package r-cran-httr2. 326s Preparing to unpack .../330-r-cran-httr2_1.0.0-1_all.deb ... 326s Unpacking r-cran-httr2 (1.0.0-1) ... 326s Selecting previously unselected package r-cran-ini. 326s Preparing to unpack .../331-r-cran-ini_0.3.1-2build1_all.deb ... 326s Unpacking r-cran-ini (0.3.1-2build1) ... 326s Selecting previously unselected package r-cran-gh. 326s Preparing to unpack .../332-r-cran-gh_1.4.0-1_all.deb ... 326s Unpacking r-cran-gh (1.4.0-1) ... 326s Selecting previously unselected package r-cran-rprojroot. 326s Preparing to unpack .../333-r-cran-rprojroot_2.0.4-1_all.deb ... 326s Unpacking r-cran-rprojroot (2.0.4-1) ... 326s Selecting previously unselected package r-cran-whisker. 326s Preparing to unpack .../334-r-cran-whisker_0.4.1-1_all.deb ... 326s Unpacking r-cran-whisker (0.4.1-1) ... 326s Selecting previously unselected package r-cran-usethis. 326s Preparing to unpack .../335-r-cran-usethis_2.2.2-1_all.deb ... 326s Unpacking r-cran-usethis (2.2.2-1) ... 326s Selecting previously unselected package r-cran-miniui. 326s Preparing to unpack .../336-r-cran-miniui_0.1.1.1-3build1_all.deb ... 326s Unpacking r-cran-miniui (0.1.1.1-3build1) ... 326s Selecting previously unselected package r-cran-pkgbuild. 326s Preparing to unpack .../337-r-cran-pkgbuild_1.4.3-1_all.deb ... 326s Unpacking r-cran-pkgbuild (1.4.3-1) ... 326s Selecting previously unselected package r-cran-downlit. 326s Preparing to unpack .../338-r-cran-downlit_0.4.3-1_all.deb ... 326s Unpacking r-cran-downlit (0.4.3-1) ... 326s Selecting previously unselected package r-cran-systemfonts. 326s Preparing to unpack .../339-r-cran-systemfonts_1.0.5-1_amd64.deb ... 326s Unpacking r-cran-systemfonts (1.0.5-1) ... 326s Selecting previously unselected package r-cran-textshaping. 326s Preparing to unpack .../340-r-cran-textshaping_0.3.7-2_amd64.deb ... 326s Unpacking r-cran-textshaping (0.3.7-2) ... 326s Selecting previously unselected package r-cran-ragg. 326s Preparing to unpack .../341-r-cran-ragg_1.2.7-1_amd64.deb ... 326s Unpacking r-cran-ragg (1.2.7-1) ... 326s Selecting previously unselected package libjs-bootswatch. 326s Preparing to unpack .../342-libjs-bootswatch_3.3.7+dfsg2-1.1_all.deb ... 326s Unpacking libjs-bootswatch (3.3.7+dfsg2-1.1) ... 326s Selecting previously unselected package r-cran-pkgdown. 326s Preparing to unpack .../343-r-cran-pkgdown_2.0.7-2_all.deb ... 326s Unpacking r-cran-pkgdown (2.0.7-2) ... 326s Selecting previously unselected package r-cran-pkgload. 326s Preparing to unpack .../344-r-cran-pkgload_1.3.4-1_all.deb ... 326s Unpacking r-cran-pkgload (1.3.4-1) ... 326s Selecting previously unselected package r-cran-profvis. 326s Preparing to unpack .../345-r-cran-profvis_0.3.8+dfsg-1_amd64.deb ... 326s Unpacking r-cran-profvis (0.3.8+dfsg-1) ... 326s Selecting previously unselected package r-cran-sessioninfo. 326s Preparing to unpack .../346-r-cran-sessioninfo_1.2.2-1_all.deb ... 326s Unpacking r-cran-sessioninfo (1.2.2-1) ... 326s Selecting previously unselected package r-cran-xopen. 326s Preparing to unpack .../347-r-cran-xopen_1.0.0+dfsg-1_all.deb ... 326s Unpacking r-cran-xopen (1.0.0+dfsg-1) ... 326s Selecting previously unselected package r-cran-rcmdcheck. 326s Preparing to unpack .../348-r-cran-rcmdcheck_1.4.0-2_all.deb ... 326s Unpacking r-cran-rcmdcheck (1.4.0-2) ... 327s Selecting previously unselected package r-cran-remotes. 327s Preparing to unpack .../349-r-cran-remotes_2.4.2.1+dfsg-2_all.deb ... 327s Unpacking r-cran-remotes (2.4.2.1+dfsg-2) ... 327s Selecting previously unselected package r-cran-roxygen2. 327s Preparing to unpack .../350-r-cran-roxygen2_7.3.1-1_amd64.deb ... 327s Unpacking r-cran-roxygen2 (7.3.1-1) ... 327s Selecting previously unselected package r-cran-rversions. 327s Preparing to unpack .../351-r-cran-rversions_2.1.2-1_all.deb ... 327s Unpacking r-cran-rversions (2.1.2-1) ... 327s Selecting previously unselected package r-cran-praise. 327s Preparing to unpack .../352-r-cran-praise_1.0.0-4build1_all.deb ... 327s Unpacking r-cran-praise (1.0.0-4build1) ... 327s Selecting previously unselected package r-cran-diffobj. 327s Preparing to unpack .../353-r-cran-diffobj_0.3.5-1_amd64.deb ... 327s Unpacking r-cran-diffobj (0.3.5-1) ... 327s Selecting previously unselected package r-cran-rematch2. 327s Preparing to unpack .../354-r-cran-rematch2_2.1.2-2build1_all.deb ... 327s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 327s Selecting previously unselected package r-cran-waldo. 327s Preparing to unpack .../355-r-cran-waldo_0.5.2-1build1_all.deb ... 327s Unpacking r-cran-waldo (0.5.2-1build1) ... 327s Selecting previously unselected package r-cran-testthat. 327s Preparing to unpack .../356-r-cran-testthat_3.2.1-1_amd64.deb ... 327s Unpacking r-cran-testthat (3.2.1-1) ... 327s Selecting previously unselected package r-cran-urlchecker. 327s Preparing to unpack .../357-r-cran-urlchecker_1.0.1-2_all.deb ... 327s Unpacking r-cran-urlchecker (1.0.1-2) ... 327s Selecting previously unselected package r-cran-devtools. 327s Preparing to unpack .../358-r-cran-devtools_2.4.5-1_all.deb ... 327s Unpacking r-cran-devtools (2.4.5-1) ... 327s Selecting previously unselected package r-cran-dtplyr. 327s Preparing to unpack .../359-r-cran-dtplyr_1.3.1-1_all.deb ... 327s Unpacking r-cran-dtplyr (1.3.1-1) ... 327s Selecting previously unselected package r-cran-gargle. 327s Preparing to unpack .../360-r-cran-gargle_1.5.2-1_all.deb ... 327s Unpacking r-cran-gargle (1.5.2-1) ... 327s Selecting previously unselected package r-cran-uuid. 327s Preparing to unpack .../361-r-cran-uuid_1.2-0-1_amd64.deb ... 327s Unpacking r-cran-uuid (1.2-0-1) ... 327s Selecting previously unselected package r-cran-googledrive. 327s Preparing to unpack .../362-r-cran-googledrive_2.1.1-1_all.deb ... 327s Unpacking r-cran-googledrive (2.1.1-1) ... 327s Selecting previously unselected package r-cran-ids. 327s Preparing to unpack .../363-r-cran-ids_1.0.1-2_all.deb ... 327s Unpacking r-cran-ids (1.0.1-2) ... 327s Selecting previously unselected package r-cran-googlesheets4. 327s Preparing to unpack .../364-r-cran-googlesheets4_1.1.1-1_all.deb ... 327s Unpacking r-cran-googlesheets4 (1.1.1-1) ... 327s Selecting previously unselected package r-cran-timechange. 327s Preparing to unpack .../365-r-cran-timechange_0.3.0-1_amd64.deb ... 327s Unpacking r-cran-timechange (0.3.0-1) ... 327s Selecting previously unselected package r-cran-lubridate. 327s Preparing to unpack .../366-r-cran-lubridate_1.9.3+dfsg-1_amd64.deb ... 327s Unpacking r-cran-lubridate (1.9.3+dfsg-1) ... 327s Selecting previously unselected package r-cran-modelr. 327s Preparing to unpack .../367-r-cran-modelr_0.1.11-1_all.deb ... 327s Unpacking r-cran-modelr (0.1.11-1) ... 328s Selecting previously unselected package r-cran-readxl. 328s Preparing to unpack .../368-r-cran-readxl_1.4.3-1_amd64.deb ... 328s Unpacking r-cran-readxl (1.4.3-1) ... 328s Selecting previously unselected package r-cran-reprex. 328s Preparing to unpack .../369-r-cran-reprex_2.1.0-1_all.deb ... 328s Unpacking r-cran-reprex (2.1.0-1) ... 328s Selecting previously unselected package r-cran-selectr. 328s Preparing to unpack .../370-r-cran-selectr_0.4-2-2build1_all.deb ... 328s Unpacking r-cran-selectr (0.4-2-2build1) ... 328s Selecting previously unselected package r-cran-rvest. 328s Preparing to unpack .../371-r-cran-rvest_1.0.3-1_all.deb ... 328s 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r-cran-ragg (1.2.7-1) ... 331s Setting up r-cran-readr (2.1.5-1) ... 331s Setting up r-cran-waldo (0.5.2-1build1) ... 331s Setting up r-cran-tidyr (1.3.1-1) ... 331s Setting up r-cran-rcmdcheck (1.4.0-2) ... 331s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 331s Setting up r-cran-googledrive (2.1.1-1) ... 331s Setting up r-cran-roxygen2 (7.3.1-1) ... 331s Setting up r-cran-googlesheets4 (1.1.1-1) ... 331s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 331s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 331s Setting up r-cran-patchwork (1.2.0-1) ... 331s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 331s Setting up r-cran-readxl (1.4.3-1) ... 331s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 331s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 331s Setting up r-cran-haven (2.5.4-1) ... 331s Setting up r-bioc-annotationdbi (1.64.1-1) ... 331s Setting up r-cran-usethis (2.2.2-1) ... 331s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 331s Setting up r-cran-testthat (3.2.1-1) ... 331s Setting up r-cran-miniui (0.1.1.1-3build1) ... 331s Setting up r-cran-broom (1.0.5+dfsg-1) ... 331s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 331s Setting up r-cran-pkgdown (2.0.7-2) ... 331s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 331s Setting up r-cran-labelled (2.12.0-2) ... 331s Setting up r-bioc-genomicalignments (1.38.2-1) ... 331s Setting up r-cran-reprex (2.1.0-1) ... 331s Setting up r-bioc-rtracklayer (1.62.0-1) ... 331s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 331s Setting up r-cran-modelr (0.1.11-1) ... 331s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 331s Setting up r-cran-profvis (0.3.8+dfsg-1) ... 331s Setting up r-cran-broom.helpers (1.14.0-2) ... 331s Setting up r-bioc-bsgenome (1.70.2-1) ... 331s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 331s Setting up r-bioc-organismdbi (1.44.0+dfsg-1) ... 331s Setting up r-cran-ggstats (0.5.1-2) ... 331s Setting up r-cran-devtools (2.4.5-1) ... 331s Setting up r-bioc-variantannotation (1.48.1-1build1) ... 331s Setting up r-cran-tidyverse (2.0.0+dfsg-1) ... 331s Setting up r-cran-ggally (2.2.1-1) ... 331s Setting up r-cran-htmltable (2.4.2-1) ... 331s Setting up r-bioc-structuralvariantannotation (1.18.0+ds-1) ... 331s Setting up r-cran-hmisc (5.1-1-1) ... 331s Setting up r-bioc-biovizbase (1.50.0-1) ... 331s Setting up r-bioc-ggbio (1.50.0-1) ... 331s Processing triggers for libc-bin (2.39-0ubuntu2) ... 331s Processing triggers for man-db (2.12.0-3) ... 333s Processing triggers for install-info (7.1-3) ... 337s Reading package lists... 337s Building dependency tree... 337s Reading state information... 338s Starting pkgProblemResolver with broken count: 0 338s Starting 2 pkgProblemResolver with broken count: 0 338s Done 338s The following NEW packages will be installed: 338s autopkgtest-satdep 338s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 338s Need to get 0 B/696 B of archives. 338s After this operation, 0 B of additional disk space will be used. 338s Get:1 /tmp/autopkgtest.wHqrFF/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 339s Selecting previously unselected package autopkgtest-satdep. 339s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 122085 files and directories currently installed.) 339s Preparing to unpack .../2-autopkgtest-satdep.deb ... 339s Unpacking autopkgtest-satdep (0) ... 339s Setting up autopkgtest-satdep (0) ... 341s (Reading database ... 122085 files and directories currently installed.) 341s Removing autopkgtest-satdep (0) ... 341s autopkgtest [19:11:22]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 341s autopkgtest [19:11:22]: test pkg-r-autopkgtest: [----------------------- 341s Test: Try to load the R library StructuralVariantAnnotation 341s 341s R version 4.3.2 (2023-10-31) -- "Eye Holes" 341s Copyright (C) 2023 The R Foundation for Statistical Computing 341s Platform: x86_64-pc-linux-gnu (64-bit) 341s 341s R is free software and comes with ABSOLUTELY NO WARRANTY. 341s You are welcome to redistribute it under certain conditions. 341s Type 'license()' or 'licence()' for distribution details. 341s 341s R is a collaborative project with many contributors. 341s Type 'contributors()' for more information and 341s 'citation()' on how to cite R or R packages in publications. 341s 341s Type 'demo()' for some demos, 'help()' for on-line help, or 341s 'help.start()' for an HTML browser interface to help. 341s Type 'q()' to quit R. 341s 341s > library('StructuralVariantAnnotation') 341s Loading required package: GenomicRanges 341s Loading required package: stats4 341s Loading required package: BiocGenerics 341s 341s Attaching package: ‘BiocGenerics’ 341s 341s The following objects are masked from ‘package:stats’: 341s 341s IQR, mad, sd, var, xtabs 341s 341s The following objects are masked from ‘package:base’: 341s 341s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 341s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 341s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 341s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 341s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 341s table, tapply, union, unique, unsplit, which.max, which.min 341s 341s Loading required package: S4Vectors 342s 342s Attaching package: ‘S4Vectors’ 342s 342s The following object is masked from ‘package:utils’: 342s 342s findMatches 342s 342s The following objects are masked from ‘package:base’: 342s 342s expand.grid, I, unname 342s 342s Loading required package: IRanges 342s Loading required package: GenomeInfoDb 343s Loading required package: rtracklayer 349s Loading required package: VariantAnnotation 349s Loading required package: MatrixGenerics 349s Loading required package: matrixStats 349s 349s Attaching package: ‘MatrixGenerics’ 349s 349s The following objects are masked from ‘package:matrixStats’: 349s 349s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 349s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 349s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 349s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 349s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 349s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 349s colWeightedMeans, colWeightedMedians, colWeightedSds, 349s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 349s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 349s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 349s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 349s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 349s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 349s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 349s rowWeightedSds, rowWeightedVars 349s 349s Loading required package: SummarizedExperiment 349s Loading required package: Biobase 349s Welcome to Bioconductor 349s 349s Vignettes contain introductory material; view with 349s 'browseVignettes()'. To cite Bioconductor, see 349s 'citation("Biobase")', and for packages 'citation("pkgname")'. 349s 349s 349s Attaching package: ‘Biobase’ 349s 349s The following object is masked from ‘package:MatrixGenerics’: 349s 349s rowMedians 349s 349s The following objects are masked from ‘package:matrixStats’: 349s 349s anyMissing, rowMedians 349s 349s Loading required package: Rsamtools 349s Loading required package: Biostrings 349s Loading required package: XVector 349s 349s Attaching package: ‘Biostrings’ 349s 349s The following object is masked from ‘package:base’: 349s 349s strsplit 349s 352s 352s Attaching package: ‘VariantAnnotation’ 352s 352s The following object is masked from ‘package:base’: 352s 352s tabulate 352s 352s > 352s > 352s Warning message: 352s package ‘VariantAnnotation’ was built under R version 4.3.3 352s Other tests are currently unsupported! 352s They will be progressively added. 353s autopkgtest [19:11:34]: test pkg-r-autopkgtest: -----------------------] 353s autopkgtest [19:11:34]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 353s pkg-r-autopkgtest PASS 353s autopkgtest [19:11:34]: @@@@@@@@@@@@@@@@@@@@ summary 353s pkg-r-autopkgtest PASS 364s Creating nova instance adt-noble-i386-r-bioc-structuralvariantannotation-20240319-190541-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240319.img (UUID 7b50f403-c8dd-4ed1-a25c-18c4799f5a5b)...