0s autopkgtest [04:53:22]: starting date and time: 2024-03-22 04:53:22+0000 0s autopkgtest [04:53:22]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [04:53:22]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ha3c_q0i/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-singlecellexperiment --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-44.secgroup --name adt-noble-i386-r-bioc-singlecellexperiment-20240322-045321-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 717s autopkgtest [05:05:19]: testbed dpkg architecture: amd64 717s autopkgtest [05:05:19]: testbed apt version: 2.7.12 717s autopkgtest [05:05:19]: test architecture: i386 717s autopkgtest [05:05:19]: @@@@@@@@@@@@@@@@@@@@ test bed setup 717s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 717s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 717s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 717s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3754 kB] 717s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 717s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [459 kB] 717s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [695 kB] 717s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 717s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 717s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 717s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 717s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4236 kB] 717s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1277 kB] 717s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 717s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 717s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 717s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 721s Fetched 11.3 MB in 2s (7384 kB/s) 721s Reading package lists... 723s Reading package lists... 724s Building dependency tree... 724s Reading state information... 724s Calculating upgrade... 724s The following packages will be upgraded: 724s cloud-init fonts-ubuntu-console python3-markupsafe 724s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 724s Need to get 629 kB of archives. 724s After this operation, 11.3 kB disk space will be freed. 724s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 724s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 724s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 725s Preconfiguring packages ... 725s Fetched 629 kB in 0s (23.5 MB/s) 725s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 725s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 725s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 725s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 725s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 725s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 725s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 726s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 726s Setting up cloud-init (24.1.2-0ubuntu1) ... 727s Setting up python3-markupsafe (2.1.5-1build1) ... 727s Processing triggers for man-db (2.12.0-3) ... 728s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 728s Reading package lists... 729s Building dependency tree... 729s Reading state information... 729s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 731s sh: Attempting to set up Debian/Ubuntu apt sources automatically 731s Reading package lists...sh: Distribution appears to be Ubuntu 731s 731s Building dependency tree... 731s Reading state information... 731s eatmydata is already the newest version (131-1). 731s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 731s Reading package lists... 732s Building dependency tree... 732s Reading state information... 732s dbus is already the newest version (1.14.10-4ubuntu1). 732s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 732s Reading package lists... 732s Building dependency tree... 732s Reading state information... 733s rng-tools-debian is already the newest version (2.4). 733s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 733s Reading package lists... 733s Building dependency tree... 733s Reading state information... 734s The following packages will be REMOVED: 734s cloud-init* python3-configobj* python3-debconf* 734s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 734s After this operation, 3256 kB disk space will be freed. 734s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 734s Removing cloud-init (24.1.2-0ubuntu1) ... 735s Removing python3-configobj (5.0.8-3) ... 735s Removing python3-debconf (1.5.86) ... 735s Processing triggers for man-db (2.12.0-3) ... 735s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 735s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 736s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 736s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 736s invoke-rc.d: policy-rc.d denied execution of try-restart. 736s Reading package lists... 736s Building dependency tree... 736s Reading state information... 737s linux-generic is already the newest version (6.8.0-11.11+1). 737s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 737s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 737s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 737s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 739s Reading package lists... 739s Reading package lists... 739s Building dependency tree... 739s Reading state information... 740s Calculating upgrade... 740s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 740s Reading package lists... 740s Building dependency tree... 740s Reading state information... 741s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 741s autopkgtest [05:05:43]: rebooting testbed after setup commands that affected boot 774s autopkgtest [05:06:16]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 775s autopkgtest [05:06:17]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-singlecellexperiment 778s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-singlecellexperiment 1.24.0+ds-1 (dsc) [2345 B] 778s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-singlecellexperiment 1.24.0+ds-1 (tar) [59.4 kB] 778s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-singlecellexperiment 1.24.0+ds-1 (diff) [2492 B] 778s gpgv: Signature made Thu Nov 30 14:07:57 2023 UTC 778s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 778s gpgv: issuer "tillea@rki.de" 778s gpgv: Can't check signature: No public key 778s dpkg-source: warning: cannot verify inline signature for ./r-bioc-singlecellexperiment_1.24.0+ds-1.dsc: no acceptable signature found 778s autopkgtest [05:06:18]: testing package r-bioc-singlecellexperiment version 1.24.0+ds-1 779s autopkgtest [05:06:21]: build not needed 780s autopkgtest [05:06:22]: test pkg-r-autopkgtest: preparing testbed 786s Note, using file '/tmp/autopkgtest.wtTtOz/1-autopkgtest-satdep.dsc' to get the build dependencies 787s Reading package lists... 787s Building dependency tree... 787s Reading state information... 787s Starting pkgProblemResolver with broken count: 0 787s Starting 2 pkgProblemResolver with broken count: 0 787s Done 787s The following NEW packages will be installed: 787s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 787s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 787s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 787s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 787s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 787s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 787s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 787s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 787s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 787s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 787s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 787s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 787s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 787s libjs-highlight.js libjs-jquery libjs-jquery-datatables 787s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 787s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 787s libjs-popper.js libjs-prettify libjs-sifter.js 787s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 787s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 787s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 787s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 787s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 787s libpotrace0 libptexenc1 libquadmath0 libreadline-dev libsharpyuv0 libsm6 787s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 787s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 787s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 787s libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass 787s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 787s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 787s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 787s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 787s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart 787s r-bioc-biostrings r-bioc-delayedarray r-bioc-ensembldb r-bioc-experimenthub 787s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 787s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-interactivedisplaybase 787s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics 787s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 787s r-bioc-s4vectors r-bioc-scrnaseq r-bioc-singlecellexperiment 787s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 787s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 787s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 787s r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 787s r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon 787s r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc 787s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis 787s r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-filelock 787s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 787s r-cran-futile.options r-cran-generics r-cran-glue r-cran-highr r-cran-hms 787s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 787s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 787s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler 787s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 787s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 787s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 787s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 787s r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl 787s r-cran-rematch2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 787s r-cran-rprojroot r-cran-rsqlite r-cran-rtsne r-cran-sass r-cran-shiny 787s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys 787s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 787s r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 787s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 787s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 787s x11-common xdg-utils zip zlib1g-dev 788s 0 upgraded, 303 newly installed, 0 to remove and 0 not upgraded. 788s Need to get 433 MB of archives. 788s After this operation, 1362 MB of additional disk space will be used. 788s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 788s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 788s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 788s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 788s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 788s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 788s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 788s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 788s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 788s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 788s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 788s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 788s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 788s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 788s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 788s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 788s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 788s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 788s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 788s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 788s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 788s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 788s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 788s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 788s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 788s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 788s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 788s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 788s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 788s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 788s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 788s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 788s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 788s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 788s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 788s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 788s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 788s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 788s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 788s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 788s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 788s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 788s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 788s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 788s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 788s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 788s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 788s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 788s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 788s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 788s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 788s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 788s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 788s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 788s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 788s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 788s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 788s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 788s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 788s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 788s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 788s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 788s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 788s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 788s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 788s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 788s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 788s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 788s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 788s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 788s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 788s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 788s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 788s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 788s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 788s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 788s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 788s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 788s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 788s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 788s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 788s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 788s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 788s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 788s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 788s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 788s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 788s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 788s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 788s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 788s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 788s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 788s Get:93 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 788s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 788s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 788s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 788s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 788s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 788s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 788s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 788s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 788s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 789s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 789s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 789s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 789s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 789s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 789s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 789s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 789s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 789s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 789s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 789s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 789s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 789s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 789s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 789s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 789s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 789s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 789s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 789s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 789s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 789s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 789s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 789s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 789s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 789s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 789s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 789s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 789s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 789s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 789s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 789s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 789s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 789s Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 789s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 789s Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 789s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 789s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 789s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 789s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 789s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 789s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 789s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 789s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 789s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 789s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 789s Get:148 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 789s Get:149 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 789s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 789s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 789s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 789s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 789s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 789s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 789s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 789s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 789s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 789s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 789s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 789s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 789s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 789s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 789s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 789s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 789s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 789s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 789s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 789s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 789s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 789s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 789s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 789s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 789s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 789s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 789s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 789s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 789s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 789s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 789s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 789s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 789s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 789s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 789s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 789s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 789s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 789s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 789s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 790s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 790s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 790s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 790s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 790s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 790s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 790s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 790s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 790s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 790s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 790s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 790s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 790s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 790s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 790s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 790s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 790s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 790s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 790s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 790s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 790s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 790s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 790s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 790s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 790s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 790s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 790s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 790s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 790s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 790s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 790s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 790s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 790s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 790s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 790s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 790s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 790s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 790s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 790s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 790s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 790s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 790s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 790s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 790s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 790s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 790s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 790s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 790s Get:236 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 790s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 790s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 790s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 790s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 790s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 790s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 790s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dt all 0.31+dfsg-1 [265 kB] 790s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 790s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 790s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 790s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 790s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 790s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 790s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 790s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 790s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 790s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 790s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 790s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 790s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 790s Get:257 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 790s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 790s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 790s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 790s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 791s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 791s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 791s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 791s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 791s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 791s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 791s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 791s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 791s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 791s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 791s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 791s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 791s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 791s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 791s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 791s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 791s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 791s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 791s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 791s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 791s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 791s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 791s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 791s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 791s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 791s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-experimenthub all 2.10.0+ds-1 [79.9 kB] 791s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-singlecellexperiment all 1.24.0+ds-1 [828 kB] 791s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-scrnaseq all 2.16.0+ds-1 [287 kB] 791s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 791s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 791s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 791s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 791s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 791s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 791s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 791s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 791s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 791s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 791s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 791s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rtsne amd64 0.17-1 [109 kB] 791s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 791s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 792s Preconfiguring packages ... 792s Fetched 433 MB in 4s (113 MB/s) 792s Selecting previously unselected package libc-dev-bin. 792s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 792s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 792s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 792s Selecting previously unselected package linux-libc-dev:amd64. 792s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 792s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 793s Selecting previously unselected package libcrypt-dev:amd64. 793s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 793s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 793s Selecting previously unselected package libtirpc-dev:amd64. 793s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 793s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 793s Selecting previously unselected package libnsl-dev:amd64. 793s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 793s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 793s Selecting previously unselected package rpcsvc-proto. 793s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 793s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 793s Selecting previously unselected package libc6-dev:amd64. 793s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 793s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 793s Selecting previously unselected package libisl23:amd64. 793s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 793s Unpacking libisl23:amd64 (0.26-3) ... 793s Selecting previously unselected package libmpc3:amd64. 793s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 793s Unpacking libmpc3:amd64 (1.3.1-1) ... 793s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 793s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 793s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 793s Selecting previously unselected package cpp-13. 793s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 793s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 793s Selecting previously unselected package cpp-x86-64-linux-gnu. 793s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 793s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 793s Selecting previously unselected package cpp. 793s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 793s Unpacking cpp (4:13.2.0-7ubuntu1) ... 793s Selecting previously unselected package libcc1-0:amd64. 793s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 793s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 793s Selecting previously unselected package libgomp1:amd64. 793s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 793s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 793s Selecting previously unselected package libitm1:amd64. 793s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 793s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 793s Selecting previously unselected package libatomic1:amd64. 793s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 793s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 794s Selecting previously unselected package libasan8:amd64. 794s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 794s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 794s Selecting previously unselected package liblsan0:amd64. 794s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 794s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 794s Selecting previously unselected package libtsan2:amd64. 794s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 794s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 794s Selecting previously unselected package libubsan1:amd64. 794s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 794s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 794s Selecting previously unselected package libhwasan0:amd64. 794s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 794s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 794s Selecting previously unselected package libquadmath0:amd64. 794s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 794s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 794s Selecting previously unselected package libgcc-13-dev:amd64. 794s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 794s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 794s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 794s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 794s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 794s Selecting previously unselected package gcc-13. 794s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 794s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 794s Selecting previously unselected package gcc-x86-64-linux-gnu. 794s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 794s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 794s Selecting previously unselected package gcc. 794s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 794s Unpacking gcc (4:13.2.0-7ubuntu1) ... 794s Selecting previously unselected package libstdc++-13-dev:amd64. 794s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 794s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 795s Selecting previously unselected package g++-13-x86-64-linux-gnu. 795s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 795s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 795s Selecting previously unselected package g++-13. 795s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 795s Unpacking g++-13 (13.2.0-17ubuntu2) ... 795s Selecting previously unselected package g++-x86-64-linux-gnu. 795s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 795s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 795s Selecting previously unselected package g++. 795s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 795s Unpacking g++ (4:13.2.0-7ubuntu1) ... 795s Selecting previously unselected package build-essential. 795s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 795s Unpacking build-essential (12.10ubuntu1) ... 795s Selecting previously unselected package dctrl-tools. 795s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 795s Unpacking dctrl-tools (2.24-3build2) ... 795s Selecting previously unselected package fonts-dejavu-mono. 795s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 795s Unpacking fonts-dejavu-mono (2.37-8) ... 795s Selecting previously unselected package fonts-dejavu-core. 795s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 795s Unpacking fonts-dejavu-core (2.37-8) ... 795s Selecting previously unselected package fontconfig-config. 795s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 795s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 795s Selecting previously unselected package libfontconfig1:amd64. 795s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 795s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 795s Selecting previously unselected package fontconfig. 795s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 795s Unpacking fontconfig (2.15.0-1ubuntu1) ... 795s Selecting previously unselected package fonts-font-awesome. 795s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 795s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 795s Selecting previously unselected package fonts-glyphicons-halflings. 796s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 796s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 796s Selecting previously unselected package fonts-lmodern. 796s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 796s Unpacking fonts-lmodern (2.005-1) ... 796s Selecting previously unselected package fonts-mathjax. 796s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 796s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 796s Selecting previously unselected package libgfortran5:amd64. 796s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 796s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 796s Selecting previously unselected package libgfortran-13-dev:amd64. 796s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 796s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 796s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 796s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 796s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 796s Selecting previously unselected package gfortran-13. 796s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 796s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 796s Selecting previously unselected package gfortran-x86-64-linux-gnu. 796s Preparing to unpack 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796s Unpacking liblatex-tounicode-perl (0.54-2) ... 796s Selecting previously unselected package libbibtex-parser-perl. 796s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 796s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 796s Selecting previously unselected package libblas3:amd64. 796s Preparing to unpack .../055-libblas3_3.12.0-3_amd64.deb ... 796s Unpacking libblas3:amd64 (3.12.0-3) ... 796s Selecting previously unselected package libblas-dev:amd64. 796s Preparing to unpack .../056-libblas-dev_3.12.0-3_amd64.deb ... 796s Unpacking libblas-dev:amd64 (3.12.0-3) ... 796s Selecting previously unselected package libboost1.83-dev:amd64. 796s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 796s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 799s Selecting previously unselected package libboost-dev:amd64. 799s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 799s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ... 799s Selecting previously unselected package libbz2-dev:amd64. 799s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 799s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 799s Selecting previously unselected package libpixman-1-0:amd64. 799s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_amd64.deb ... 799s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 799s Selecting previously unselected package libxcb-render0:amd64. 799s Preparing to unpack .../061-libxcb-render0_1.15-1_amd64.deb ... 799s Unpacking libxcb-render0:amd64 (1.15-1) ... 799s Selecting previously unselected package libxcb-shm0:amd64. 799s Preparing to unpack .../062-libxcb-shm0_1.15-1_amd64.deb ... 799s Unpacking libxcb-shm0:amd64 (1.15-1) ... 799s Selecting previously unselected package libxrender1:amd64. 799s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 799s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 799s Selecting previously unselected package libcairo2:amd64. 799s Preparing to unpack .../064-libcairo2_1.18.0-1_amd64.deb ... 799s Unpacking libcairo2:amd64 (1.18.0-1) ... 799s Selecting previously unselected package libdatrie1:amd64. 799s Preparing to unpack .../065-libdatrie1_0.2.13-3_amd64.deb ... 799s Unpacking libdatrie1:amd64 (0.2.13-3) ... 799s Selecting previously unselected package libdeflate0:amd64. 799s Preparing to unpack .../066-libdeflate0_1.19-1_amd64.deb ... 799s Unpacking libdeflate0:amd64 (1.19-1) ... 799s Selecting previously unselected package libgraphite2-3:amd64. 799s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_amd64.deb ... 799s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 799s Selecting previously unselected package libharfbuzz0b:amd64. 799s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_amd64.deb ... 799s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 799s Selecting previously unselected package x11-common. 799s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 799s Unpacking x11-common (1:7.7+23ubuntu2) ... 799s Selecting previously unselected package libice6:amd64. 799s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_amd64.deb ... 799s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 799s Selecting previously unselected package libicu-dev:amd64. 799s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_amd64.deb ... 799s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 800s Selecting previously unselected package libjpeg-turbo8:amd64. 800s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 800s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 800s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 800s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 800s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 800s Selecting previously unselected package libjpeg8:amd64. 800s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_amd64.deb ... 800s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 800s Selecting previously unselected package libjpeg8-dev:amd64. 800s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 800s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 800s Selecting previously unselected package libjpeg-dev:amd64. 800s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 800s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 800s Selecting previously unselected package libjs-bootstrap. 800s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 800s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 800s Selecting previously unselected package libjs-popper.js. 800s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 800s Unpacking libjs-popper.js (1.16.1+ds-6) ... 800s Selecting previously unselected package libjs-bootstrap4. 800s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 800s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 800s Selecting previously unselected package libjs-d3. 800s 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unpack .../095-liblapack-dev_3.12.0-3_amd64.deb ... 801s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 801s Selecting previously unselected package liblerc4:amd64. 801s Preparing to unpack .../096-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 801s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 801s Selecting previously unselected package liblua5.4-0:amd64. 801s Preparing to unpack .../097-liblua5.4-0_5.4.6-3_amd64.deb ... 801s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 801s Selecting previously unselected package libncurses-dev:amd64. 801s Preparing to unpack .../098-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 801s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 801s Selecting previously unselected package libthai-data. 801s Preparing to unpack .../099-libthai-data_0.1.29-2_all.deb ... 801s Unpacking libthai-data (0.1.29-2) ... 801s Selecting previously unselected package libthai0:amd64. 801s Preparing to unpack .../100-libthai0_0.1.29-2_amd64.deb ... 801s Unpacking libthai0:amd64 (0.1.29-2) ... 801s Selecting previously unselected package libpango-1.0-0:amd64. 801s Preparing to unpack .../101-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 801s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 801s Selecting previously unselected package libpangoft2-1.0-0:amd64. 801s Preparing to unpack .../102-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 801s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 801s Selecting previously unselected package libpangocairo-1.0-0:amd64. 801s Preparing to unpack .../103-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 801s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 801s Selecting previously unselected package libpaper1:amd64. 801s Preparing to unpack .../104-libpaper1_1.1.29_amd64.deb ... 801s Unpacking libpaper1:amd64 (1.1.29) ... 801s Selecting previously unselected package libpaper-utils. 801s Preparing to unpack .../105-libpaper-utils_1.1.29_amd64.deb ... 801s Unpacking libpaper-utils (1.1.29) ... 801s Selecting previously unselected package libpcre2-16-0:amd64. 801s Preparing to unpack .../106-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 802s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 802s Selecting previously unselected package libpcre2-32-0:amd64. 802s Preparing to unpack .../107-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 802s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 802s Selecting previously unselected package libpcre2-posix3:amd64. 802s Preparing to unpack .../108-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 802s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 802s Selecting previously unselected package libpcre2-dev:amd64. 802s Preparing to unpack .../109-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 802s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 802s Selecting previously unselected package libpkgconf3:amd64. 802s Preparing to unpack .../110-libpkgconf3_1.8.1-2_amd64.deb ... 802s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 802s Selecting previously unselected package zlib1g-dev:amd64. 802s Preparing to unpack .../111-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 802s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 802s Selecting previously unselected package libpng-dev:amd64. 802s Preparing to unpack .../112-libpng-dev_1.6.43-1_amd64.deb ... 802s Unpacking libpng-dev:amd64 (1.6.43-1) ... 802s Selecting previously unselected package libpotrace0:amd64. 802s Preparing to unpack .../113-libpotrace0_1.16-2_amd64.deb ... 802s Unpacking libpotrace0:amd64 (1.16-2) ... 802s Selecting previously unselected package libptexenc1:amd64. 802s Preparing to unpack .../114-libptexenc1_2023.20230311.66589-9_amd64.deb ... 802s Unpacking libptexenc1:amd64 (2023.20230311.66589-9) ... 802s Selecting previously unselected package libreadline-dev:amd64. 802s Preparing to unpack .../115-libreadline-dev_8.2-3_amd64.deb ... 802s Unpacking libreadline-dev:amd64 (8.2-3) ... 802s Selecting previously unselected package libsharpyuv0:amd64. 802s Preparing to unpack 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unselected package libtk8.6:amd64. 802s Preparing to unpack .../127-libtk8.6_8.6.13-2_amd64.deb ... 802s Unpacking libtk8.6:amd64 (8.6.13-2) ... 802s Selecting previously unselected package libxt6:amd64. 802s Preparing to unpack .../128-libxt6_1%3a1.2.1-1.1_amd64.deb ... 802s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 802s Selecting previously unselected package libxmu6:amd64. 802s Preparing to unpack .../129-libxmu6_2%3a1.1.3-3_amd64.deb ... 802s Unpacking libxmu6:amd64 (2:1.1.3-3) ... 802s Selecting previously unselected package libxpm4:amd64. 802s Preparing to unpack .../130-libxpm4_1%3a3.5.17-1_amd64.deb ... 802s Unpacking libxpm4:amd64 (1:3.5.17-1) ... 802s Selecting previously unselected package libxaw7:amd64. 802s Preparing to unpack .../131-libxaw7_2%3a1.0.14-1_amd64.deb ... 802s Unpacking libxaw7:amd64 (2:1.0.14-1) ... 802s Selecting previously unselected package libxi6:amd64. 803s Preparing to unpack .../132-libxi6_2%3a1.8.1-1_amd64.deb ... 803s Unpacking libxi6:amd64 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... 803s Unpacking r-cran-littler (0.3.19-1) ... 803s Selecting previously unselected package littler. 803s Preparing to unpack .../139-littler_0.3.19-1_all.deb ... 803s Unpacking littler (0.3.19-1) ... 803s Selecting previously unselected package node-bootstrap-sass. 803s Preparing to unpack .../140-node-bootstrap-sass_3.4.3-2_all.deb ... 803s Unpacking node-bootstrap-sass (3.4.3-2) ... 803s Selecting previously unselected package node-html5shiv. 803s Preparing to unpack .../141-node-html5shiv_3.7.3+dfsg-5_all.deb ... 803s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 803s Selecting previously unselected package node-normalize.css. 803s Preparing to unpack .../142-node-normalize.css_8.0.1-5_all.deb ... 803s Unpacking node-normalize.css (8.0.1-5) ... 803s Selecting previously unselected package pandoc-data. 803s Preparing to unpack .../143-pandoc-data_3.1.3-1_all.deb ... 803s Unpacking pandoc-data (3.1.3-1) ... 803s Selecting previously unselected package pandoc. 803s Preparing to unpack .../144-pandoc_3.1.3+ds-2_amd64.deb ... 803s Unpacking pandoc (3.1.3+ds-2) ... 804s Selecting previously unselected package pkgconf-bin. 804s Preparing to unpack .../145-pkgconf-bin_1.8.1-2_amd64.deb ... 804s Unpacking pkgconf-bin (1.8.1-2) ... 804s Selecting previously unselected package pkgconf:amd64. 804s Preparing to unpack .../146-pkgconf_1.8.1-2_amd64.deb ... 804s Unpacking pkgconf:amd64 (1.8.1-2) ... 804s Selecting previously unselected package pkg-config:amd64. 804s Preparing to unpack .../147-pkg-config_1.8.1-2_amd64.deb ... 804s Unpacking pkg-config:amd64 (1.8.1-2) ... 804s Selecting previously unselected package liblzma-dev:amd64. 804s Preparing to unpack .../148-liblzma-dev_5.4.5-0.3_amd64.deb ... 804s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 805s Selecting previously unselected package r-base-dev. 805s Preparing to unpack .../149-r-base-dev_4.3.2-1build1_all.deb ... 805s Unpacking r-base-dev (4.3.2-1build1) ... 805s Selecting previously unselected package pkg-r-autopkgtest. 805s Preparing to unpack .../150-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 805s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 805s Selecting previously unselected package r-bioc-biocgenerics. 805s Preparing to unpack .../151-r-bioc-biocgenerics_0.48.1-2_all.deb ... 805s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 805s Selecting previously unselected package r-bioc-biobase. 805s Preparing to unpack .../152-r-bioc-biobase_2.62.0-1_amd64.deb ... 805s Unpacking r-bioc-biobase (2.62.0-1) ... 805s Selecting previously unselected package r-bioc-s4vectors. 805s Preparing to unpack .../153-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 805s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 805s Selecting previously unselected package r-bioc-iranges. 805s Preparing to unpack .../154-r-bioc-iranges_2.36.0-1_amd64.deb ... 805s Unpacking r-bioc-iranges (2.36.0-1) ... 805s Selecting previously unselected package r-cran-dbi. 805s Preparing to unpack .../155-r-cran-dbi_1.2.2-1_all.deb ... 805s Unpacking r-cran-dbi (1.2.2-1) ... 805s Selecting previously unselected package r-cran-bit. 805s Preparing to unpack .../156-r-cran-bit_4.0.5-1_amd64.deb ... 805s Unpacking r-cran-bit (4.0.5-1) ... 805s Selecting previously unselected package r-cran-bit64. 805s Preparing to unpack .../157-r-cran-bit64_4.0.5-1_amd64.deb ... 805s Unpacking r-cran-bit64 (4.0.5-1) ... 805s Selecting previously unselected package r-cran-rlang. 805s Preparing to unpack .../158-r-cran-rlang_1.1.3-1_amd64.deb ... 805s Unpacking r-cran-rlang (1.1.3-1) ... 805s Selecting previously unselected package r-cran-cli. 805s Preparing to unpack .../159-r-cran-cli_3.6.2-1_amd64.deb ... 805s Unpacking r-cran-cli (3.6.2-1) ... 805s Selecting previously unselected package r-cran-glue. 805s Preparing to unpack .../160-r-cran-glue_1.7.0-1_amd64.deb ... 805s Unpacking r-cran-glue (1.7.0-1) ... 805s Selecting previously unselected package r-cran-lifecycle. 805s Preparing to unpack .../161-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 805s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 805s Selecting previously unselected package r-cran-vctrs. 805s Preparing to unpack .../162-r-cran-vctrs_0.6.5-1_amd64.deb ... 805s Unpacking r-cran-vctrs (0.6.5-1) ... 805s Selecting previously unselected package r-cran-blob. 805s Preparing to unpack .../163-r-cran-blob_1.2.4-1_all.deb ... 805s Unpacking r-cran-blob (1.2.4-1) ... 805s Selecting previously unselected package r-cran-fastmap. 805s Preparing to unpack .../164-r-cran-fastmap_1.1.1-1_amd64.deb ... 805s Unpacking r-cran-fastmap (1.1.1-1) ... 805s Selecting previously unselected package r-cran-cachem. 805s Preparing to unpack .../165-r-cran-cachem_1.0.8-1_amd64.deb ... 805s Unpacking r-cran-cachem (1.0.8-1) ... 805s Selecting previously unselected package r-cran-memoise. 805s Preparing to unpack .../166-r-cran-memoise_2.0.1-1_all.deb ... 805s Unpacking r-cran-memoise (2.0.1-1) ... 805s Selecting previously unselected package r-cran-pkgconfig. 805s Preparing to unpack .../167-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 805s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 805s Selecting previously unselected package r-cran-plogr. 806s Preparing to unpack .../168-r-cran-plogr_0.2.0-3build1_all.deb ... 806s Unpacking r-cran-plogr (0.2.0-3build1) ... 806s Selecting previously unselected package r-cran-cpp11. 806s Preparing to unpack .../169-r-cran-cpp11_0.4.7-1_all.deb ... 806s Unpacking r-cran-cpp11 (0.4.7-1) ... 806s Selecting previously unselected package r-cran-rsqlite. 806s Preparing to unpack .../170-r-cran-rsqlite_2.3.4-1_amd64.deb ... 806s Unpacking r-cran-rsqlite (2.3.4-1) ... 806s Selecting previously unselected package r-cran-curl. 806s Preparing to unpack .../171-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 806s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 806s Selecting previously unselected package r-cran-jsonlite. 806s Preparing to unpack .../172-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 806s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 806s Selecting previously unselected package r-cran-mime. 806s Preparing to unpack .../173-r-cran-mime_0.12-1_amd64.deb ... 806s Unpacking r-cran-mime (0.12-1) ... 806s Selecting previously unselected package r-cran-sys. 806s Preparing to unpack .../174-r-cran-sys_3.4.2-1_amd64.deb ... 806s Unpacking r-cran-sys (3.4.2-1) ... 806s Selecting previously unselected package r-cran-askpass. 806s Preparing to unpack .../175-r-cran-askpass_1.2.0-1_amd64.deb ... 806s Unpacking r-cran-askpass (1.2.0-1) ... 806s Selecting previously unselected package r-cran-openssl. 806s Preparing to unpack .../176-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 806s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 806s Selecting previously unselected package r-cran-r6. 806s Preparing to unpack .../177-r-cran-r6_2.5.1-1_all.deb ... 806s Unpacking r-cran-r6 (2.5.1-1) ... 806s Selecting previously unselected package r-cran-httr. 806s Preparing to unpack .../178-r-cran-httr_1.4.7+dfsg-1_all.deb ... 806s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 806s Selecting previously unselected package r-cran-png. 806s Preparing to unpack .../179-r-cran-png_0.1-8-1_amd64.deb ... 806s Unpacking r-cran-png (0.1-8-1) ... 806s Selecting previously unselected package r-bioc-zlibbioc. 806s Preparing to unpack .../180-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 806s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 806s Selecting previously unselected package r-bioc-xvector. 806s Preparing to unpack .../181-r-bioc-xvector_0.42.0-1_amd64.deb ... 806s Unpacking r-bioc-xvector (0.42.0-1) ... 806s Selecting previously unselected package r-cran-bitops. 806s Preparing to unpack .../182-r-cran-bitops_1.0-7-1_amd64.deb ... 806s Unpacking r-cran-bitops (1.0-7-1) ... 806s Selecting previously unselected package r-cran-rcurl. 806s Preparing to unpack .../183-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 806s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 806s Selecting previously unselected package r-bioc-genomeinfodbdata. 806s Preparing to unpack .../184-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 806s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 806s Selecting previously unselected package r-bioc-genomeinfodb. 806s Preparing to unpack .../185-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 806s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 806s Selecting previously unselected package r-cran-crayon. 806s Preparing to unpack .../186-r-cran-crayon_1.5.2-1_all.deb ... 806s Unpacking r-cran-crayon (1.5.2-1) ... 806s Selecting previously unselected package r-bioc-biostrings. 806s Preparing to unpack .../187-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 806s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 807s Selecting previously unselected package r-bioc-keggrest. 807s Preparing to unpack .../188-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 807s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 807s Selecting previously unselected package r-bioc-annotationdbi. 807s Preparing to unpack .../189-r-bioc-annotationdbi_1.64.1-1_all.deb ... 807s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 807s Selecting previously unselected package r-bioc-genomicranges. 807s Preparing to unpack .../190-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 807s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 807s Selecting previously unselected package r-cran-lazyeval. 807s Preparing to unpack .../191-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 807s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 807s Selecting previously unselected package r-bioc-annotationfilter. 807s Preparing to unpack .../192-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 807s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 807s Selecting previously unselected package r-cran-generics. 807s Preparing to unpack .../193-r-cran-generics_0.1.3-1_all.deb ... 807s Unpacking r-cran-generics (0.1.3-1) ... 807s Selecting previously unselected package r-cran-magrittr. 807s Preparing to unpack .../194-r-cran-magrittr_2.0.3-1_amd64.deb ... 807s Unpacking r-cran-magrittr (2.0.3-1) ... 807s Selecting previously unselected package r-cran-fansi. 807s Preparing to unpack .../195-r-cran-fansi_1.0.5-1_amd64.deb ... 807s Unpacking r-cran-fansi (1.0.5-1) ... 807s Selecting previously unselected package r-cran-utf8. 807s Preparing to unpack .../196-r-cran-utf8_1.2.4-1_amd64.deb ... 807s Unpacking r-cran-utf8 (1.2.4-1) ... 807s Selecting previously unselected package r-cran-pillar. 807s Preparing to unpack .../197-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 807s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 807s Selecting previously unselected package r-cran-tibble. 807s Preparing to unpack .../198-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 807s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 807s Selecting previously unselected package r-cran-withr. 807s Preparing to unpack .../199-r-cran-withr_2.5.0-1_all.deb ... 807s Unpacking r-cran-withr (2.5.0-1) ... 807s Selecting previously unselected package r-cran-tidyselect. 807s Preparing to unpack .../200-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 807s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 807s Selecting previously unselected package r-cran-dplyr. 807s Preparing to unpack .../201-r-cran-dplyr_1.1.4-1_amd64.deb ... 807s Unpacking r-cran-dplyr (1.1.4-1) ... 807s Selecting previously unselected package r-cran-purrr. 807s Preparing to unpack .../202-r-cran-purrr_1.0.2-1_amd64.deb ... 807s Unpacking r-cran-purrr (1.0.2-1) ... 807s Selecting previously unselected package r-cran-stringi. 807s Preparing to unpack .../203-r-cran-stringi_1.8.3-1_amd64.deb ... 807s Unpacking r-cran-stringi (1.8.3-1) ... 807s Selecting previously unselected package r-cran-stringr. 807s Preparing to unpack .../204-r-cran-stringr_1.5.1-1_all.deb ... 807s Unpacking r-cran-stringr (1.5.1-1) ... 807s Selecting previously unselected package r-cran-tidyr. 807s Preparing to unpack .../205-r-cran-tidyr_1.3.1-1_amd64.deb ... 807s Unpacking r-cran-tidyr (1.3.1-1) ... 807s Selecting previously unselected package r-cran-dbplyr. 807s Preparing to unpack .../206-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 807s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 808s Selecting previously unselected package r-cran-filelock. 808s Preparing to unpack .../207-r-cran-filelock_1.0.3-1_amd64.deb ... 808s Unpacking r-cran-filelock (1.0.3-1) ... 808s Selecting previously unselected package r-bioc-biocfilecache. 808s Preparing to unpack .../208-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 808s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 808s Selecting previously unselected package r-cran-biocmanager. 808s Preparing to unpack .../209-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 808s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 808s Selecting previously unselected package r-bioc-biocversion. 808s Preparing to unpack .../210-r-bioc-biocversion_3.18.1-1_all.deb ... 808s Unpacking r-bioc-biocversion (3.18.1-1) ... 808s Selecting previously unselected package r-cran-rappdirs. 808s Preparing to unpack .../211-r-cran-rappdirs_0.3.3-1_amd64.deb ... 808s Unpacking r-cran-rappdirs (0.3.3-1) ... 808s Selecting previously unselected package r-cran-yaml. 808s Preparing to unpack .../212-r-cran-yaml_2.3.8-1_amd64.deb ... 808s Unpacking r-cran-yaml (2.3.8-1) ... 808s Selecting previously unselected package r-cran-pkgkitten. 808s Preparing to unpack .../213-r-cran-pkgkitten_0.2.3-1_all.deb ... 808s Unpacking r-cran-pkgkitten (0.2.3-1) ... 808s Selecting previously unselected package r-cran-rcpp. 808s Preparing to unpack .../214-r-cran-rcpp_1.0.12-1_amd64.deb ... 808s Unpacking r-cran-rcpp (1.0.12-1) ... 808s Selecting previously unselected package r-cran-later. 808s Preparing to unpack .../215-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 808s Unpacking r-cran-later (1.3.2+dfsg-1) ... 808s Selecting previously unselected package r-cran-promises. 808s Preparing to unpack .../216-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 808s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 808s Selecting previously unselected package r-cran-httpuv. 808s Preparing to unpack .../217-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 808s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 808s Selecting previously unselected package r-cran-xtable. 808s Preparing to unpack .../218-r-cran-xtable_1%3a1.8-4-2_all.deb ... 808s Unpacking r-cran-xtable (1:1.8-4-2) ... 808s Selecting previously unselected package r-cran-base64enc. 808s Preparing to unpack .../219-r-cran-base64enc_0.1-3-3_amd64.deb ... 808s Unpacking r-cran-base64enc (0.1-3-3) ... 808s Selecting previously unselected package r-cran-digest. 808s Preparing to unpack .../220-r-cran-digest_0.6.34-1_amd64.deb ... 808s Unpacking r-cran-digest (0.6.34-1) ... 808s Selecting previously unselected package r-cran-ellipsis. 808s Preparing to unpack .../221-r-cran-ellipsis_0.3.2-2_amd64.deb ... 808s Unpacking r-cran-ellipsis (0.3.2-2) ... 808s Selecting previously unselected package r-cran-htmltools. 808s Preparing to unpack .../222-r-cran-htmltools_0.5.7-1_amd64.deb ... 808s Unpacking r-cran-htmltools (0.5.7-1) ... 808s Selecting previously unselected package r-cran-fontawesome. 808s Preparing to unpack .../223-r-cran-fontawesome_0.5.2-1_all.deb ... 808s Unpacking r-cran-fontawesome (0.5.2-1) ... 808s Selecting previously unselected package r-cran-sourcetools. 808s Preparing to unpack .../224-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 808s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 808s Selecting previously unselected package r-cran-commonmark. 809s Preparing to unpack .../225-r-cran-commonmark_1.9.1-1_amd64.deb ... 809s Unpacking r-cran-commonmark (1.9.1-1) ... 809s Selecting previously unselected package r-cran-jquerylib. 809s Preparing to unpack .../226-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 809s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 809s Selecting previously unselected package r-cran-fs. 809s Preparing to unpack .../227-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 809s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 809s Selecting previously unselected package r-cran-sass. 809s Preparing to unpack .../228-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 809s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 809s Selecting previously unselected package r-cran-bslib. 809s Preparing to unpack .../229-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 809s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 809s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 809s Preparing to unpack .../230-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 809s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 809s Selecting previously unselected package r-cran-shiny. 809s Preparing to unpack .../231-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 809s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 809s Selecting previously unselected package r-cran-evaluate. 809s Preparing to unpack .../232-r-cran-evaluate_0.23-1_all.deb ... 809s Unpacking r-cran-evaluate (0.23-1) ... 809s Selecting previously unselected package r-cran-xfun. 809s Preparing to unpack .../233-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 809s Unpacking r-cran-xfun (0.41+dfsg-1) ... 809s Selecting previously unselected package r-cran-highr. 809s Preparing to unpack .../234-r-cran-highr_0.10+dfsg-1_all.deb ... 809s Unpacking r-cran-highr (0.10+dfsg-1) ... 809s Selecting previously unselected package libjs-mathjax. 809s Preparing to unpack .../235-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 809s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 810s Selecting previously unselected package r-cran-knitr. 810s Preparing to unpack .../236-r-cran-knitr_1.45+dfsg-1_all.deb ... 810s Unpacking r-cran-knitr (1.45+dfsg-1) ... 810s Selecting previously unselected package r-cran-tinytex. 810s Preparing to unpack .../237-r-cran-tinytex_0.49-1_all.deb ... 810s Unpacking r-cran-tinytex (0.49-1) ... 810s Selecting previously unselected package libjs-modernizr. 810s Preparing to unpack .../238-libjs-modernizr_2.6.2+ds1-5_all.deb ... 810s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 810s Selecting previously unselected package r-cran-rmarkdown. 810s Preparing to unpack .../239-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 810s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 810s Selecting previously unselected package r-cran-htmlwidgets. 810s Preparing to unpack .../240-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 810s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 810s Selecting previously unselected package r-cran-crosstalk. 810s Preparing to unpack .../241-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 810s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 810s Selecting previously unselected package r-cran-dt. 810s Preparing to unpack .../242-r-cran-dt_0.31+dfsg-1_all.deb ... 810s Unpacking r-cran-dt (0.31+dfsg-1) ... 810s Selecting previously unselected package r-bioc-interactivedisplaybase. 811s Preparing to unpack .../243-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 811s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 811s Selecting previously unselected package r-bioc-annotationhub. 811s Preparing to unpack .../244-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 811s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 811s Selecting previously unselected package r-bioc-biocio. 811s Preparing to unpack .../245-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 811s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 811s Selecting previously unselected package r-cran-formatr. 811s Preparing to unpack .../246-r-cran-formatr_1.14-1_all.deb ... 811s Unpacking r-cran-formatr (1.14-1) ... 811s Selecting previously unselected package r-cran-lambda.r. 811s Preparing to unpack .../247-r-cran-lambda.r_1.2.4-2build1_all.deb ... 811s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 811s Selecting previously unselected package r-cran-futile.options. 811s Preparing to unpack .../248-r-cran-futile.options_1.0.1-3build1_all.deb ... 811s Unpacking r-cran-futile.options (1.0.1-3build1) ... 811s Selecting previously unselected package r-cran-futile.logger. 811s Preparing to unpack .../249-r-cran-futile.logger_1.4.3-4build1_all.deb ... 811s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 811s Selecting previously unselected package r-cran-snow. 811s Preparing to unpack .../250-r-cran-snow_1%3a0.4.4-2_all.deb ... 811s Unpacking r-cran-snow (1:0.4.4-2) ... 811s Selecting previously unselected package r-cran-codetools. 811s Preparing to unpack .../251-r-cran-codetools_0.2-19-1_all.deb ... 811s Unpacking r-cran-codetools (0.2-19-1) ... 811s Selecting previously unselected package r-cran-bh. 811s Preparing to unpack .../252-r-cran-bh_1.84.0-1_all.deb ... 811s Unpacking r-cran-bh (1.84.0-1) ... 811s Selecting previously unselected package r-bioc-biocparallel. 811s Preparing to unpack .../253-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 811s Unpacking r-bioc-biocparallel (1.36.0-1) ... 811s Selecting previously unselected package r-cran-bookdown. 811s Preparing to unpack .../254-r-cran-bookdown_0.37+dfsg-1_all.deb ... 811s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 811s Selecting previously unselected package tex-common. 811s Preparing to unpack .../255-tex-common_6.18_all.deb ... 811s Unpacking tex-common (6.18) ... 811s Selecting previously unselected package t1utils. 811s Preparing to unpack .../256-t1utils_1.41-4build2_amd64.deb ... 811s Unpacking t1utils (1.41-4build2) ... 811s Selecting previously unselected package texlive-binaries. 811s Preparing to unpack .../257-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 811s Unpacking texlive-binaries (2023.20230311.66589-9) ... 811s Selecting previously unselected package texlive-base. 811s Preparing to unpack .../258-texlive-base_2023.20240207-1_all.deb ... 811s Unpacking texlive-base (2023.20240207-1) ... 813s Selecting previously unselected package texlive-latex-base. 813s Preparing to unpack .../259-texlive-latex-base_2023.20240207-1_all.deb ... 813s Unpacking texlive-latex-base (2023.20240207-1) ... 813s Selecting previously unselected package texlive-bibtex-extra. 813s Preparing to unpack .../260-texlive-bibtex-extra_2023.20240207-1_all.deb ... 813s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 817s Selecting previously unselected package r-bioc-biocstyle. 817s Preparing to unpack .../261-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 817s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 817s Selecting previously unselected package r-cran-xml. 817s Preparing to unpack .../262-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 817s Unpacking r-cran-xml (3.99-0.16.1-1) ... 817s Selecting previously unselected package r-cran-hms. 817s Preparing to unpack .../263-r-cran-hms_1.1.3-1_all.deb ... 817s Unpacking r-cran-hms (1.1.3-1) ... 817s Selecting previously unselected package r-cran-prettyunits. 817s Preparing to unpack .../264-r-cran-prettyunits_1.2.0-1_all.deb ... 817s Unpacking r-cran-prettyunits (1.2.0-1) ... 817s Selecting previously unselected package r-cran-progress. 817s Preparing to unpack .../265-r-cran-progress_1.2.3-1_all.deb ... 817s Unpacking r-cran-progress (1.2.3-1) ... 817s Selecting previously unselected package r-cran-xml2. 817s Preparing to unpack .../266-r-cran-xml2_1.3.6-1_amd64.deb ... 817s Unpacking r-cran-xml2 (1.3.6-1) ... 818s Selecting previously unselected package r-bioc-biomart. 818s Preparing to unpack .../267-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 818s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 818s Selecting previously unselected package r-cran-lattice. 818s Preparing to unpack .../268-r-cran-lattice_0.22-5-1_amd64.deb ... 818s Unpacking r-cran-lattice (0.22-5-1) ... 818s Selecting previously unselected package r-cran-matrix. 818s Preparing to unpack .../269-r-cran-matrix_1.6-5-1_amd64.deb ... 818s Unpacking r-cran-matrix (1.6-5-1) ... 818s Selecting previously unselected package r-cran-matrixstats. 818s Preparing to unpack .../270-r-cran-matrixstats_1.2.0-1_amd64.deb ... 818s Unpacking r-cran-matrixstats (1.2.0-1) ... 818s Selecting previously unselected package r-bioc-matrixgenerics. 818s Preparing to unpack .../271-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 818s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 818s Selecting previously unselected package r-cran-abind. 818s Preparing to unpack .../272-r-cran-abind_1.4-5-2_all.deb ... 818s Unpacking r-cran-abind (1.4-5-2) ... 818s Selecting previously unselected package r-bioc-s4arrays. 818s Preparing to unpack .../273-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 818s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 818s Selecting previously unselected package r-bioc-sparsearray. 818s Preparing to unpack .../274-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 818s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 818s Selecting previously unselected package r-bioc-delayedarray. 818s Preparing to unpack .../275-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 818s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 818s Selecting previously unselected package r-bioc-rhtslib. 818s Preparing to unpack .../276-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 818s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 818s Selecting previously unselected package r-bioc-rsamtools. 818s Preparing to unpack .../277-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 818s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 818s Selecting previously unselected package r-bioc-summarizedexperiment. 818s Preparing to unpack .../278-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 818s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 818s Selecting previously unselected package r-bioc-genomicalignments. 818s Preparing to unpack .../279-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 818s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 818s Selecting previously unselected package r-cran-rjson. 818s Preparing to unpack .../280-r-cran-rjson_0.2.21-1_amd64.deb ... 818s Unpacking r-cran-rjson (0.2.21-1) ... 818s Selecting previously unselected package r-cran-restfulr. 818s Preparing to unpack .../281-r-cran-restfulr_0.0.15-1_amd64.deb ... 818s Unpacking r-cran-restfulr (0.0.15-1) ... 818s Selecting previously unselected package r-bioc-rtracklayer. 818s Preparing to unpack .../282-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 818s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 819s Selecting previously unselected package r-bioc-genomicfeatures. 819s Preparing to unpack .../283-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 819s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 819s Selecting previously unselected package r-bioc-protgenerics. 819s Preparing to unpack .../284-r-bioc-protgenerics_1.34.0-1_all.deb ... 819s Unpacking r-bioc-protgenerics (1.34.0-1) ... 819s Selecting previously unselected package r-bioc-ensembldb. 819s Preparing to unpack .../285-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 819s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 819s Selecting previously unselected package r-bioc-experimenthub. 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r-cran-cli (3.6.2-1) ... 826s Setting up gfortran (4:13.2.0-7ubuntu1) ... 826s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 826s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 826s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 826s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 826s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 826s Setting up r-cran-bitops (1.0-7-1) ... 826s Setting up r-bioc-biocversion (3.18.1-1) ... 826s Setting up r-cran-rprojroot (2.0.4-1) ... 826s Setting up r-cran-bit64 (4.0.5-1) ... 826s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 826s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 826s Setting up r-cran-askpass (1.2.0-1) ... 826s 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826s Setting up r-cran-httr (1.4.7+dfsg-1) ... 826s Setting up r-cran-hms (1.1.3-1) ... 826s Setting up r-cran-memoise (2.0.1-1) ... 826s Setting up r-cran-promises (1.2.1+dfsg-1) ... 826s Setting up r-cran-purrr (1.0.2-1) ... 826s Setting up r-cran-blob (1.2.4-1) ... 826s Setting up r-cran-htmltools (0.5.7-1) ... 826s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 826s Setting up r-bioc-xvector (0.42.0-1) ... 826s Setting up r-cran-pkgbuild (1.4.3-1) ... 826s Setting up r-cran-sass (0.4.8+dfsg-1) ... 826s Setting up r-cran-dplyr (1.1.4-1) ... 826s Setting up r-cran-rsqlite (2.3.4-1) ... 826s Setting up r-cran-progress (1.2.3-1) ... 826s Setting up r-cran-pkgload (1.3.4-1) ... 826s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 826s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 826s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 826s Setting up r-cran-rematch2 (2.1.2-2build1) ... 826s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 826s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 826s Setting up r-cran-fontawesome (0.5.2-1) ... 826s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 826s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 826s Setting up r-cran-waldo (0.5.2-1build1) ... 826s Setting up r-cran-tidyr (1.3.1-1) ... 826s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 826s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 826s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 826s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 826s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 826s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 826s Setting up r-bioc-annotationdbi (1.64.1-1) ... 826s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 826s Setting up r-cran-testthat (3.2.1-1) ... 826s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 826s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 826s Setting up r-bioc-genomicalignments (1.38.2-1) ... 826s Setting up r-cran-bookdown (0.37+dfsg-1) ... 826s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 826s Setting up r-bioc-rtracklayer (1.62.0-1) ... 826s Setting up r-bioc-singlecellexperiment (1.24.0+ds-1) ... 826s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 826s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 826s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 826s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 826s Setting up r-cran-dt (0.31+dfsg-1) ... 826s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 826s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 826s Setting up r-bioc-experimenthub (2.10.0+ds-1) ... 826s Setting up r-bioc-scrnaseq (2.16.0+ds-1) ... 826s Processing triggers for man-db (2.12.0-3) ... 828s Processing triggers for install-info (7.1-3) ... 828s Processing triggers for libc-bin (2.39-0ubuntu2) ... 828s Processing triggers for tex-common (6.18) ... 828s Running updmap-sys. This may take some time... done. 828s Running mktexlsr /var/lib/texmf ... done. 828s Building format(s) --all. 865s This may take some time... done. 867s Reading package lists... 867s Building dependency tree... 867s Reading state information... 867s Starting pkgProblemResolver with broken count: 0 867s Starting 2 pkgProblemResolver with broken count: 0 867s Done 868s The following NEW packages will be installed: 868s autopkgtest-satdep 868s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 868s Need to get 0 B/700 B of archives. 868s After this operation, 0 B of additional disk space will be used. 868s Get:1 /tmp/autopkgtest.wtTtOz/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 869s Selecting previously unselected package autopkgtest-satdep. 869s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 123407 files and directories currently installed.) 869s Preparing to unpack .../2-autopkgtest-satdep.deb ... 869s Unpacking autopkgtest-satdep (0) ... 869s Setting up autopkgtest-satdep (0) ... 871s (Reading database ... 123407 files and directories currently installed.) 871s Removing autopkgtest-satdep (0) ... 871s autopkgtest [05:07:53]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 871s autopkgtest [05:07:53]: test pkg-r-autopkgtest: [----------------------- 871s Test: Try to load the R library SingleCellExperiment 871s 871s R version 4.3.2 (2023-10-31) -- "Eye Holes" 871s Copyright (C) 2023 The R Foundation for Statistical Computing 871s Platform: x86_64-pc-linux-gnu (64-bit) 871s 871s R is free software and comes with ABSOLUTELY NO WARRANTY. 871s You are welcome to redistribute it under certain conditions. 871s Type 'license()' or 'licence()' for distribution details. 871s 871s R is a collaborative project with many contributors. 871s Type 'contributors()' for more information and 871s 'citation()' on how to cite R or R packages in publications. 871s 871s Type 'demo()' for some demos, 'help()' for on-line help, or 871s 'help.start()' for an HTML browser interface to help. 871s Type 'q()' to quit R. 871s 871s > library('SingleCellExperiment') 871s Loading required package: SummarizedExperiment 871s Loading required package: MatrixGenerics 871s Loading required package: matrixStats 871s 871s Attaching package: ‘MatrixGenerics’ 871s 871s The following objects are masked from ‘package:matrixStats’: 871s 871s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 871s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 871s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 871s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 871s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 871s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 871s colWeightedMeans, colWeightedMedians, colWeightedSds, 871s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 871s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 871s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 871s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 871s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 871s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 871s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 871s rowWeightedSds, rowWeightedVars 871s 871s Loading required package: GenomicRanges 871s Loading required package: stats4 871s Loading required package: BiocGenerics 871s 871s Attaching package: ‘BiocGenerics’ 871s 871s The following objects are masked from ‘package:stats’: 871s 871s IQR, mad, sd, var, xtabs 871s 871s The following objects are masked from ‘package:base’: 871s 871s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 871s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 871s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 871s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 871s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 871s table, tapply, union, unique, unsplit, which.max, which.min 871s 871s Loading required package: S4Vectors 872s 872s Attaching package: ‘S4Vectors’ 872s 872s The following object is masked from ‘package:utils’: 872s 872s findMatches 872s 872s The following objects are masked from ‘package:base’: 872s 872s expand.grid, I, unname 872s 872s Loading required package: IRanges 873s Loading required package: GenomeInfoDb 874s Loading required package: Biobase 874s Welcome to Bioconductor 874s 874s Vignettes contain introductory material; view with 874s 'browseVignettes()'. To cite Bioconductor, see 874s 'citation("Biobase")', and for packages 'citation("pkgname")'. 874s 874s 874s Attaching package: ‘Biobase’ 874s 874s The following object is masked from ‘package:MatrixGenerics’: 874s 874s rowMedians 874s 874s The following objects are masked from ‘package:matrixStats’: 874s 874s anyMissing, rowMedians 874s 878s > 878s > 878s Other tests are currently unsupported! 878s They will be progressively added. 879s autopkgtest [05:08:01]: test pkg-r-autopkgtest: -----------------------] 879s autopkgtest [05:08:01]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 879s pkg-r-autopkgtest PASS 879s autopkgtest [05:08:01]: @@@@@@@@@@@@@@@@@@@@ summary 879s pkg-r-autopkgtest PASS 892s Creating nova instance adt-noble-i386-r-bioc-singlecellexperiment-20240322-045321-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...