1s autopkgtest [04:48:52]: starting date and time: 2024-03-22 04:48:52+0000 1s autopkgtest [04:48:52]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 1s autopkgtest [04:48:52]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._kqc1dzo/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-scrnaseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-73.secgroup --name adt-noble-i386-r-bioc-scrnaseq-20240322-044851-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 644s autopkgtest [04:59:35]: testbed dpkg architecture: amd64 644s autopkgtest [04:59:35]: testbed apt version: 2.7.12 644s autopkgtest [04:59:35]: test architecture: i386 644s autopkgtest [04:59:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup 644s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 644s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 644s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3754 kB] 644s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 644s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 644s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [459 kB] 644s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [695 kB] 644s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 644s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 644s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 644s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 644s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1277 kB] 644s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4236 kB] 644s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 644s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 644s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 644s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 647s Fetched 11.3 MB in 1s (7521 kB/s) 648s Reading package lists... 649s Reading package lists... 650s Building dependency tree... 650s Reading state information... 650s Calculating upgrade... 650s The following packages will be upgraded: 650s cloud-init fonts-ubuntu-console python3-markupsafe 650s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 650s Need to get 629 kB of archives. 650s After this operation, 11.3 kB disk space will be freed. 650s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 650s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 650s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 651s Preconfiguring packages ... 651s Fetched 629 kB in 0s (12.3 MB/s) 651s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 651s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 651s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 651s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 651s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 651s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 651s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 651s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 651s Setting up cloud-init (24.1.2-0ubuntu1) ... 653s Setting up python3-markupsafe (2.1.5-1build1) ... 653s Processing triggers for man-db (2.12.0-3) ... 654s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 654s Reading package lists... 654s Building dependency tree... 654s Reading state information... 655s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 655s sh: Attempting to set up Debian/Ubuntu apt sources automatically 655s sh: Distribution appears to be Ubuntu 656s Reading package lists... 656s Building dependency tree... 656s Reading state information... 657s eatmydata is already the newest version (131-1). 657s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 657s Reading package lists... 657s Building dependency tree... 657s Reading state information... 657s dbus is already the newest version (1.14.10-4ubuntu1). 657s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 657s Reading package lists... 657s Building dependency tree... 657s Reading state information... 658s rng-tools-debian is already the newest version (2.4). 658s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 658s Reading package lists... 658s Building dependency tree... 658s Reading state information... 658s The following packages will be REMOVED: 658s cloud-init* python3-configobj* python3-debconf* 659s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 659s After this operation, 3256 kB disk space will be freed. 659s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 659s Removing cloud-init (24.1.2-0ubuntu1) ... 659s Removing python3-configobj (5.0.8-3) ... 659s Removing python3-debconf (1.5.86) ... 659s Processing triggers for man-db (2.12.0-3) ... 660s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 660s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 660s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 660s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 660s invoke-rc.d: policy-rc.d denied execution of try-restart. 661s Reading package lists... 661s Building dependency tree... 661s Reading state information... 661s linux-generic is already the newest version (6.8.0-11.11+1). 661s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 661s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 661s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 661s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 664s Reading package lists... 664s Reading package lists... 664s Building dependency tree... 664s Reading state information... 664s Calculating upgrade... 664s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 664s Reading package lists... 665s Building dependency tree... 665s Reading state information... 665s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 665s autopkgtest [04:59:56]: rebooting testbed after setup commands that affected boot 682s autopkgtest [05:00:13]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 683s autopkgtest [05:00:14]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-scrnaseq 684s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-scrnaseq 2.16.0+ds-1 (dsc) [2360 B] 684s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-scrnaseq 2.16.0+ds-1 (tar) [87.0 kB] 684s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-scrnaseq 2.16.0+ds-1 (diff) [5756 B] 684s gpgv: Signature made Fri Dec 1 15:57:02 2023 UTC 684s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 684s gpgv: issuer "tille@debian.org" 684s gpgv: Can't check signature: No public key 684s dpkg-source: warning: cannot verify inline signature for ./r-bioc-scrnaseq_2.16.0+ds-1.dsc: no acceptable signature found 684s autopkgtest [05:00:15]: testing package r-bioc-scrnaseq version 2.16.0+ds-1 685s autopkgtest [05:00:16]: build not needed 687s autopkgtest [05:00:18]: test pkg-r-autopkgtest: preparing testbed 692s Note, using file '/tmp/autopkgtest.aQSxoX/1-autopkgtest-satdep.dsc' to get the build dependencies 692s Reading package lists... 692s Building dependency tree... 692s Reading state information... 692s Starting pkgProblemResolver with broken count: 0 693s Starting 2 pkgProblemResolver with broken count: 0 693s Done 695s The following NEW packages will be installed: 695s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 695s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 695s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 695s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 695s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 695s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 695s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 695s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 695s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 695s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 695s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 695s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 695s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 695s libjs-highlight.js libjs-jquery libjs-jquery-datatables 695s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 695s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 695s libjs-popper.js libjs-prettify libjs-sifter.js 695s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 695s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 695s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 695s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 695s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 695s libpotrace0 libptexenc1 libquadmath0 libreadline-dev libsharpyuv0 libsm6 695s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 695s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 695s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 695s libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass 695s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 695s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 695s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 695s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 695s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart 695s r-bioc-biostrings r-bioc-delayedarray r-bioc-ensembldb r-bioc-experimenthub 695s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 695s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-interactivedisplaybase 695s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics 695s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 695s r-bioc-s4vectors r-bioc-scrnaseq r-bioc-singlecellexperiment 695s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 695s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 695s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 695s r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 695s r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon 695s r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc 695s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis 695s r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-filelock 695s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 695s r-cran-futile.options r-cran-generics r-cran-glue r-cran-highr r-cran-hms 695s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 695s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 695s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler 695s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 695s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 695s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 695s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 695s r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl 695s r-cran-rematch2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 695s r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-shiny r-cran-snow 695s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat 695s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 695s r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 695s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 695s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 695s xdg-utils zip zlib1g-dev 695s 0 upgraded, 302 newly installed, 0 to remove and 0 not upgraded. 695s Need to get 432 MB of archives. 695s After this operation, 1361 MB of additional disk space will be used. 695s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 695s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 695s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 695s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 695s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 695s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 695s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 695s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 695s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 695s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 695s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 695s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 695s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 695s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 695s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 695s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 695s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 695s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 695s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 695s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 695s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 695s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 695s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 695s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 695s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 695s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 695s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 695s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 695s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 695s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 695s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 695s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 695s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 695s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 695s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 695s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 695s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 695s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 695s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 695s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 695s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 695s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 695s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 695s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 695s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 695s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 695s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 695s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 695s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 695s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 695s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 695s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 695s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 695s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 695s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 695s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 695s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 695s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 695s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 695s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 695s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 695s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 695s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 695s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 695s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 695s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 695s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 695s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 695s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 695s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 695s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 695s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 695s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 695s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 695s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 695s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 695s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 695s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 695s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 695s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 695s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 695s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 695s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 695s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 695s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 695s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 695s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 695s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 695s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 695s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 695s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 695s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 695s Get:93 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 695s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 695s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 695s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 695s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 695s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 695s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 695s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 695s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 695s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 695s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 695s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 695s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 695s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 695s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 695s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 695s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 695s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 695s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 695s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 695s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 695s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 695s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 695s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 695s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 695s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 695s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 695s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 695s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 695s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 695s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 695s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 695s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 695s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 695s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 695s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 695s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 695s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 695s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 695s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 695s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 695s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 695s Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 695s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 695s Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 695s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 695s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 695s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 695s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 695s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 695s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 695s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 695s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 695s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 695s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 695s Get:148 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 695s Get:149 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 695s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 695s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 695s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 695s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 695s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 695s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 695s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 695s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 695s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 695s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 695s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 695s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 695s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 695s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 695s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 695s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 695s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 695s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 695s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 695s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 695s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 695s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 695s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 695s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 695s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 695s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 695s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 695s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 695s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 695s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 695s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 695s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 695s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 695s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 695s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 695s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 695s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 695s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 695s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 695s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 695s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 695s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 695s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 695s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 695s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 695s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 695s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 695s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 695s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 695s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 695s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 695s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 695s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 695s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 695s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 695s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 695s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 695s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 695s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 695s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 695s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 695s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 695s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 695s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 695s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 695s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 695s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 695s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 695s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 695s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 695s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 695s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 695s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 695s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 695s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 695s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 695s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 695s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 695s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 695s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 695s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 695s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 695s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 695s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 695s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 695s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 695s Get:236 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 695s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 695s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 695s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 695s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 695s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 695s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 695s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dt all 0.31+dfsg-1 [265 kB] 695s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 695s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 695s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 695s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 695s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 695s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 695s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 695s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 695s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 695s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 695s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 695s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 695s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 695s Get:257 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 695s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 695s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 696s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 696s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 696s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 696s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 696s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 696s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 696s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 696s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 696s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 696s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 696s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 696s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 696s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 696s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 696s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 696s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 696s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 696s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 696s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 696s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 696s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 696s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 696s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 696s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 696s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 696s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 696s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 696s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-experimenthub all 2.10.0+ds-1 [79.9 kB] 696s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-singlecellexperiment all 1.24.0+ds-1 [828 kB] 696s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-scrnaseq all 2.16.0+ds-1 [287 kB] 696s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 696s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 696s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 696s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 696s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 696s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 696s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 696s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 696s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 696s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 696s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 696s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 696s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 697s Preconfiguring packages ... 697s Fetched 432 MB in 3s (132 MB/s) 697s Selecting previously unselected package libc-dev-bin. 697s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 697s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 697s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 697s Selecting previously unselected package linux-libc-dev:amd64. 697s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 697s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 698s Selecting previously unselected package libcrypt-dev:amd64. 698s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 698s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 698s Selecting previously unselected package libtirpc-dev:amd64. 698s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 698s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 698s Selecting previously unselected package libnsl-dev:amd64. 698s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 698s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 698s Selecting previously unselected package rpcsvc-proto. 698s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 698s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 698s Selecting previously unselected package libc6-dev:amd64. 698s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 698s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 698s Selecting previously unselected package libisl23:amd64. 698s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 698s Unpacking libisl23:amd64 (0.26-3) ... 699s Selecting previously unselected package libmpc3:amd64. 699s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 699s Unpacking libmpc3:amd64 (1.3.1-1) ... 699s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 699s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 699s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 699s Selecting previously unselected package cpp-13. 699s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 699s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 699s Selecting previously unselected package cpp-x86-64-linux-gnu. 699s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 699s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 699s Selecting previously unselected package cpp. 699s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 699s Unpacking cpp (4:13.2.0-7ubuntu1) ... 699s Selecting previously unselected package libcc1-0:amd64. 699s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 699s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 699s Selecting previously unselected package libgomp1:amd64. 699s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 699s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 699s Selecting previously unselected package libitm1:amd64. 699s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 699s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 699s Selecting previously unselected package libatomic1:amd64. 699s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 699s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 699s Selecting previously unselected package libasan8:amd64. 699s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 699s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 699s Selecting previously unselected package liblsan0:amd64. 699s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 699s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 699s Selecting previously unselected package libtsan2:amd64. 699s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 699s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 699s Selecting previously unselected package libubsan1:amd64. 699s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 699s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 699s Selecting previously unselected package libhwasan0:amd64. 699s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 699s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 699s Selecting previously unselected package libquadmath0:amd64. 699s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 699s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 699s Selecting previously unselected package libgcc-13-dev:amd64. 699s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 699s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 699s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 699s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 699s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 699s Selecting previously unselected package gcc-13. 699s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 699s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 699s Selecting previously unselected package gcc-x86-64-linux-gnu. 699s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 699s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 699s Selecting previously unselected package gcc. 699s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 699s Unpacking gcc (4:13.2.0-7ubuntu1) ... 699s Selecting previously unselected package libstdc++-13-dev:amd64. 699s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 699s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 699s Selecting previously unselected package g++-13-x86-64-linux-gnu. 699s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 699s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 700s Selecting previously unselected package g++-13. 700s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 700s Unpacking g++-13 (13.2.0-17ubuntu2) ... 700s Selecting previously unselected package g++-x86-64-linux-gnu. 700s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 700s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 700s Selecting previously unselected package g++. 700s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 700s Unpacking g++ (4:13.2.0-7ubuntu1) ... 700s Selecting previously unselected package build-essential. 700s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 700s Unpacking build-essential (12.10ubuntu1) ... 700s Selecting previously unselected package dctrl-tools. 700s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 700s Unpacking dctrl-tools (2.24-3build2) ... 700s Selecting previously unselected package fonts-dejavu-mono. 700s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 700s Unpacking fonts-dejavu-mono (2.37-8) ... 700s Selecting previously unselected package fonts-dejavu-core. 700s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 700s Unpacking fonts-dejavu-core (2.37-8) ... 700s Selecting previously unselected package fontconfig-config. 700s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 700s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 700s Selecting previously unselected package libfontconfig1:amd64. 700s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 700s Unpacking 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fonts-mathjax (2.7.9+dfsg-1) ... 701s Selecting previously unselected package libgfortran5:amd64. 701s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 701s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 701s Selecting previously unselected package libgfortran-13-dev:amd64. 701s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 701s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 701s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 701s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 701s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 701s Selecting previously unselected package gfortran-13. 701s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 701s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 701s Selecting previously unselected package gfortran-x86-64-linux-gnu. 701s Preparing to unpack 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x11-common (1:7.7+23ubuntu2) ... 704s Selecting previously unselected package libice6:amd64. 704s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_amd64.deb ... 704s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 704s Selecting previously unselected package libicu-dev:amd64. 704s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_amd64.deb ... 704s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 705s Selecting previously unselected package libjpeg-turbo8:amd64. 705s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 705s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 705s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 705s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 705s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 705s Selecting previously unselected package libjpeg8:amd64. 705s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_amd64.deb ... 705s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 705s Selecting previously unselected package libjpeg8-dev:amd64. 705s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 705s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 705s Selecting previously unselected package libjpeg-dev:amd64. 705s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 705s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 705s Selecting previously unselected package libjs-bootstrap. 705s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 705s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 705s Selecting previously unselected package libjs-popper.js. 705s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 705s Unpacking libjs-popper.js (1.16.1+ds-6) ... 705s Selecting previously unselected package libjs-bootstrap4. 705s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 705s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 705s Selecting previously unselected package libjs-d3. 705s 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unpack .../095-liblapack-dev_3.12.0-3_amd64.deb ... 706s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 706s Selecting previously unselected package liblerc4:amd64. 706s Preparing to unpack .../096-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 706s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 706s Selecting previously unselected package liblua5.4-0:amd64. 706s Preparing to unpack .../097-liblua5.4-0_5.4.6-3_amd64.deb ... 706s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 706s Selecting previously unselected package libncurses-dev:amd64. 706s Preparing to unpack .../098-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 706s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 706s Selecting previously unselected package libthai-data. 706s Preparing to unpack .../099-libthai-data_0.1.29-2_all.deb ... 706s Unpacking libthai-data (0.1.29-2) ... 706s Selecting previously unselected package libthai0:amd64. 706s Preparing to unpack .../100-libthai0_0.1.29-2_amd64.deb ... 706s Unpacking 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previously unselected package libpcre2-16-0:amd64. 706s Preparing to unpack .../106-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 706s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 706s Selecting previously unselected package libpcre2-32-0:amd64. 706s Preparing to unpack .../107-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 706s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 706s Selecting previously unselected package libpcre2-posix3:amd64. 706s Preparing to unpack .../108-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 706s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 706s Selecting previously unselected package libpcre2-dev:amd64. 706s Preparing to unpack .../109-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 706s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 706s Selecting previously unselected package libpkgconf3:amd64. 706s Preparing to unpack .../110-libpkgconf3_1.8.1-2_amd64.deb ... 706s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 706s Selecting previously unselected 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unselected package libtk8.6:amd64. 707s Preparing to unpack .../127-libtk8.6_8.6.13-2_amd64.deb ... 707s Unpacking libtk8.6:amd64 (8.6.13-2) ... 707s Selecting previously unselected package libxt6:amd64. 707s Preparing to unpack .../128-libxt6_1%3a1.2.1-1.1_amd64.deb ... 707s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 707s Selecting previously unselected package libxmu6:amd64. 707s Preparing to unpack .../129-libxmu6_2%3a1.1.3-3_amd64.deb ... 707s Unpacking libxmu6:amd64 (2:1.1.3-3) ... 707s Selecting previously unselected package libxpm4:amd64. 707s Preparing to unpack .../130-libxpm4_1%3a3.5.17-1_amd64.deb ... 707s Unpacking libxpm4:amd64 (1:3.5.17-1) ... 707s Selecting previously unselected package libxaw7:amd64. 707s Preparing to unpack .../131-libxaw7_2%3a1.0.14-1_amd64.deb ... 707s Unpacking libxaw7:amd64 (2:1.0.14-1) ... 707s Selecting previously unselected package libxi6:amd64. 707s Preparing to unpack .../132-libxi6_2%3a1.8.1-1_amd64.deb ... 707s Unpacking libxi6:amd64 (2:1.8.1-1) ... 707s Selecting previously unselected package libzzip-0-13:amd64. 707s Preparing to unpack .../133-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... 707s Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 707s Selecting previously unselected package zip. 707s Preparing to unpack .../134-zip_3.0-13_amd64.deb ... 707s Unpacking zip (3.0-13) ... 707s Selecting previously unselected package unzip. 707s Preparing to unpack .../135-unzip_6.0-28ubuntu3_amd64.deb ... 707s Unpacking unzip (6.0-28ubuntu3) ... 707s Selecting previously unselected package xdg-utils. 707s Preparing to unpack .../136-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 707s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 707s Selecting previously unselected package r-base-core. 707s Preparing to unpack .../137-r-base-core_4.3.2-1build1_amd64.deb ... 707s Unpacking r-base-core (4.3.2-1build1) ... 708s Selecting previously unselected package r-cran-littler. 708s Preparing to unpack .../138-r-cran-littler_0.3.19-1_amd64.deb ... 708s Unpacking r-cran-littler (0.3.19-1) ... 708s Selecting previously unselected package littler. 708s Preparing to unpack .../139-littler_0.3.19-1_all.deb ... 708s Unpacking littler (0.3.19-1) ... 708s Selecting previously unselected package node-bootstrap-sass. 708s Preparing to unpack .../140-node-bootstrap-sass_3.4.3-2_all.deb ... 708s Unpacking node-bootstrap-sass (3.4.3-2) ... 708s Selecting previously unselected package node-html5shiv. 708s Preparing to unpack .../141-node-html5shiv_3.7.3+dfsg-5_all.deb ... 708s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 708s Selecting previously unselected package node-normalize.css. 708s Preparing to unpack .../142-node-normalize.css_8.0.1-5_all.deb ... 708s Unpacking node-normalize.css (8.0.1-5) ... 708s Selecting previously unselected package pandoc-data. 708s Preparing to unpack .../143-pandoc-data_3.1.3-1_all.deb ... 708s Unpacking pandoc-data (3.1.3-1) ... 708s Selecting previously unselected package pandoc. 708s Preparing to unpack .../144-pandoc_3.1.3+ds-2_amd64.deb ... 708s Unpacking pandoc (3.1.3+ds-2) ... 709s Selecting previously unselected package pkgconf-bin. 709s Preparing to unpack .../145-pkgconf-bin_1.8.1-2_amd64.deb ... 709s Unpacking pkgconf-bin (1.8.1-2) ... 709s Selecting previously unselected package pkgconf:amd64. 709s Preparing to unpack .../146-pkgconf_1.8.1-2_amd64.deb ... 709s Unpacking pkgconf:amd64 (1.8.1-2) ... 709s Selecting previously unselected package pkg-config:amd64. 709s Preparing to unpack .../147-pkg-config_1.8.1-2_amd64.deb ... 709s Unpacking pkg-config:amd64 (1.8.1-2) ... 709s Selecting previously unselected package liblzma-dev:amd64. 709s Preparing to unpack .../148-liblzma-dev_5.4.5-0.3_amd64.deb ... 709s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 709s Selecting previously unselected package r-base-dev. 709s Preparing to unpack .../149-r-base-dev_4.3.2-1build1_all.deb ... 709s Unpacking r-base-dev (4.3.2-1build1) ... 709s Selecting previously unselected package pkg-r-autopkgtest. 709s Preparing to unpack .../150-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 709s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 709s Selecting previously unselected package r-bioc-biocgenerics. 709s Preparing to unpack .../151-r-bioc-biocgenerics_0.48.1-2_all.deb ... 709s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 709s Selecting previously unselected package r-bioc-biobase. 709s Preparing to unpack .../152-r-bioc-biobase_2.62.0-1_amd64.deb ... 709s Unpacking r-bioc-biobase (2.62.0-1) ... 709s Selecting previously unselected package r-bioc-s4vectors. 709s Preparing to unpack .../153-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 709s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 709s Selecting previously unselected package r-bioc-iranges. 709s Preparing to unpack .../154-r-bioc-iranges_2.36.0-1_amd64.deb ... 709s Unpacking r-bioc-iranges (2.36.0-1) ... 709s Selecting previously unselected package r-cran-dbi. 709s Preparing to unpack .../155-r-cran-dbi_1.2.2-1_all.deb ... 709s Unpacking r-cran-dbi (1.2.2-1) ... 709s Selecting previously unselected package r-cran-bit. 709s Preparing to unpack .../156-r-cran-bit_4.0.5-1_amd64.deb ... 709s Unpacking r-cran-bit (4.0.5-1) ... 709s Selecting previously unselected package r-cran-bit64. 709s Preparing to unpack .../157-r-cran-bit64_4.0.5-1_amd64.deb ... 709s Unpacking r-cran-bit64 (4.0.5-1) ... 710s Selecting previously unselected package r-cran-rlang. 710s Preparing to unpack .../158-r-cran-rlang_1.1.3-1_amd64.deb ... 710s Unpacking r-cran-rlang (1.1.3-1) ... 710s Selecting previously unselected package r-cran-cli. 710s Preparing to unpack .../159-r-cran-cli_3.6.2-1_amd64.deb ... 710s Unpacking r-cran-cli (3.6.2-1) ... 710s Selecting previously unselected package r-cran-glue. 710s Preparing to unpack .../160-r-cran-glue_1.7.0-1_amd64.deb ... 710s Unpacking r-cran-glue (1.7.0-1) ... 710s Selecting previously unselected package r-cran-lifecycle. 710s Preparing to unpack .../161-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 710s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 710s Selecting previously unselected package r-cran-vctrs. 710s Preparing to unpack .../162-r-cran-vctrs_0.6.5-1_amd64.deb ... 710s Unpacking r-cran-vctrs (0.6.5-1) ... 710s Selecting previously unselected package r-cran-blob. 710s Preparing to unpack .../163-r-cran-blob_1.2.4-1_all.deb ... 710s Unpacking r-cran-blob (1.2.4-1) ... 710s Selecting previously unselected package r-cran-fastmap. 710s Preparing to unpack .../164-r-cran-fastmap_1.1.1-1_amd64.deb ... 710s Unpacking r-cran-fastmap (1.1.1-1) ... 710s Selecting previously unselected package r-cran-cachem. 710s Preparing to unpack .../165-r-cran-cachem_1.0.8-1_amd64.deb ... 710s Unpacking r-cran-cachem (1.0.8-1) ... 710s Selecting previously unselected package r-cran-memoise. 710s Preparing to unpack .../166-r-cran-memoise_2.0.1-1_all.deb ... 710s Unpacking r-cran-memoise (2.0.1-1) ... 710s Selecting previously unselected package r-cran-pkgconfig. 710s Preparing to unpack .../167-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 710s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 710s Selecting previously unselected package r-cran-plogr. 710s Preparing to unpack .../168-r-cran-plogr_0.2.0-3build1_all.deb ... 710s Unpacking r-cran-plogr (0.2.0-3build1) ... 710s Selecting previously unselected package r-cran-cpp11. 710s Preparing to unpack .../169-r-cran-cpp11_0.4.7-1_all.deb ... 710s Unpacking r-cran-cpp11 (0.4.7-1) ... 710s Selecting previously unselected package r-cran-rsqlite. 710s Preparing to unpack .../170-r-cran-rsqlite_2.3.4-1_amd64.deb ... 710s Unpacking r-cran-rsqlite (2.3.4-1) ... 710s Selecting previously unselected package r-cran-curl. 710s Preparing to unpack .../171-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 710s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 710s Selecting previously unselected package r-cran-jsonlite. 710s Preparing to unpack .../172-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 710s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 710s Selecting previously unselected package r-cran-mime. 710s Preparing to unpack .../173-r-cran-mime_0.12-1_amd64.deb ... 710s Unpacking r-cran-mime (0.12-1) ... 710s Selecting previously unselected package r-cran-sys. 710s Preparing to unpack .../174-r-cran-sys_3.4.2-1_amd64.deb ... 710s Unpacking r-cran-sys (3.4.2-1) ... 710s Selecting previously unselected package r-cran-askpass. 710s Preparing to unpack .../175-r-cran-askpass_1.2.0-1_amd64.deb ... 710s Unpacking r-cran-askpass (1.2.0-1) ... 710s Selecting previously unselected package r-cran-openssl. 710s Preparing to unpack .../176-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 710s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 710s Selecting previously unselected package r-cran-r6. 710s Preparing to unpack .../177-r-cran-r6_2.5.1-1_all.deb ... 710s Unpacking r-cran-r6 (2.5.1-1) ... 710s Selecting previously unselected package r-cran-httr. 710s Preparing to unpack .../178-r-cran-httr_1.4.7+dfsg-1_all.deb ... 710s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 710s Selecting previously unselected package r-cran-png. 710s Preparing to unpack .../179-r-cran-png_0.1-8-1_amd64.deb ... 710s Unpacking r-cran-png (0.1-8-1) ... 710s Selecting previously unselected package r-bioc-zlibbioc. 711s Preparing to unpack .../180-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 711s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 711s Selecting previously unselected package r-bioc-xvector. 711s Preparing to unpack .../181-r-bioc-xvector_0.42.0-1_amd64.deb ... 711s Unpacking r-bioc-xvector (0.42.0-1) ... 711s Selecting previously unselected package r-cran-bitops. 711s Preparing to unpack .../182-r-cran-bitops_1.0-7-1_amd64.deb ... 711s Unpacking r-cran-bitops (1.0-7-1) ... 711s Selecting previously unselected package r-cran-rcurl. 711s Preparing to unpack .../183-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 711s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 711s Selecting previously unselected package r-bioc-genomeinfodbdata. 711s Preparing to unpack .../184-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 711s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 711s Selecting previously unselected package r-bioc-genomeinfodb. 711s Preparing to unpack .../185-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 711s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 711s Selecting previously unselected package r-cran-crayon. 711s Preparing to unpack .../186-r-cran-crayon_1.5.2-1_all.deb ... 711s Unpacking r-cran-crayon (1.5.2-1) ... 711s Selecting previously unselected package r-bioc-biostrings. 711s Preparing to unpack .../187-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 711s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 711s Selecting previously unselected package r-bioc-keggrest. 711s Preparing to unpack .../188-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 711s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 711s Selecting previously unselected package r-bioc-annotationdbi. 711s Preparing to unpack .../189-r-bioc-annotationdbi_1.64.1-1_all.deb ... 711s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 711s Selecting previously unselected package r-bioc-genomicranges. 711s Preparing to unpack .../190-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 711s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 711s Selecting previously unselected package r-cran-lazyeval. 711s Preparing to unpack .../191-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 711s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 711s Selecting previously unselected package r-bioc-annotationfilter. 711s Preparing to unpack .../192-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 711s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 711s Selecting previously unselected package r-cran-generics. 711s Preparing to unpack .../193-r-cran-generics_0.1.3-1_all.deb ... 711s Unpacking r-cran-generics (0.1.3-1) ... 711s Selecting previously unselected package r-cran-magrittr. 711s Preparing to unpack .../194-r-cran-magrittr_2.0.3-1_amd64.deb ... 711s Unpacking r-cran-magrittr (2.0.3-1) ... 711s Selecting previously unselected package r-cran-fansi. 711s Preparing to unpack .../195-r-cran-fansi_1.0.5-1_amd64.deb ... 711s Unpacking r-cran-fansi (1.0.5-1) ... 711s Selecting previously unselected package r-cran-utf8. 711s Preparing to unpack .../196-r-cran-utf8_1.2.4-1_amd64.deb ... 711s Unpacking r-cran-utf8 (1.2.4-1) ... 711s Selecting previously unselected package r-cran-pillar. 711s Preparing to unpack .../197-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 711s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 711s Selecting previously unselected package r-cran-tibble. 711s Preparing to unpack .../198-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 711s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 712s Selecting previously unselected package r-cran-withr. 712s Preparing to unpack .../199-r-cran-withr_2.5.0-1_all.deb ... 712s Unpacking r-cran-withr (2.5.0-1) ... 712s Selecting previously unselected package r-cran-tidyselect. 712s Preparing to unpack .../200-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 712s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 712s Selecting previously unselected package r-cran-dplyr. 712s Preparing to unpack .../201-r-cran-dplyr_1.1.4-1_amd64.deb ... 712s Unpacking r-cran-dplyr (1.1.4-1) ... 712s Selecting previously unselected package r-cran-purrr. 712s Preparing to unpack .../202-r-cran-purrr_1.0.2-1_amd64.deb ... 712s Unpacking r-cran-purrr (1.0.2-1) ... 712s Selecting previously unselected package r-cran-stringi. 712s Preparing to unpack .../203-r-cran-stringi_1.8.3-1_amd64.deb ... 712s Unpacking r-cran-stringi (1.8.3-1) ... 712s Selecting previously unselected package r-cran-stringr. 712s Preparing to unpack .../204-r-cran-stringr_1.5.1-1_all.deb ... 712s Unpacking r-cran-stringr (1.5.1-1) ... 712s Selecting previously unselected package r-cran-tidyr. 712s Preparing to unpack .../205-r-cran-tidyr_1.3.1-1_amd64.deb ... 712s Unpacking r-cran-tidyr (1.3.1-1) ... 712s Selecting previously unselected package r-cran-dbplyr. 712s Preparing to unpack .../206-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 712s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 712s Selecting previously unselected package r-cran-filelock. 712s Preparing to unpack .../207-r-cran-filelock_1.0.3-1_amd64.deb ... 712s Unpacking r-cran-filelock (1.0.3-1) ... 712s Selecting previously unselected package r-bioc-biocfilecache. 712s Preparing to unpack .../208-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 712s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 712s Selecting previously unselected package r-cran-biocmanager. 712s Preparing to unpack .../209-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 712s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 712s Selecting previously unselected package r-bioc-biocversion. 712s Preparing to unpack .../210-r-bioc-biocversion_3.18.1-1_all.deb ... 712s Unpacking r-bioc-biocversion (3.18.1-1) ... 712s Selecting previously unselected package r-cran-rappdirs. 712s Preparing to unpack .../211-r-cran-rappdirs_0.3.3-1_amd64.deb ... 712s Unpacking r-cran-rappdirs (0.3.3-1) ... 712s Selecting previously unselected package r-cran-yaml. 712s Preparing to unpack .../212-r-cran-yaml_2.3.8-1_amd64.deb ... 712s Unpacking r-cran-yaml (2.3.8-1) ... 712s Selecting previously unselected package r-cran-pkgkitten. 712s Preparing to unpack .../213-r-cran-pkgkitten_0.2.3-1_all.deb ... 712s Unpacking r-cran-pkgkitten (0.2.3-1) ... 712s Selecting previously unselected package r-cran-rcpp. 712s Preparing to unpack .../214-r-cran-rcpp_1.0.12-1_amd64.deb ... 712s Unpacking r-cran-rcpp (1.0.12-1) ... 712s Selecting previously unselected package r-cran-later. 712s Preparing to unpack .../215-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 712s Unpacking r-cran-later (1.3.2+dfsg-1) ... 712s Selecting previously unselected package r-cran-promises. 712s Preparing to unpack .../216-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 712s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 712s Selecting previously unselected package r-cran-httpuv. 713s Preparing to unpack .../217-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 713s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 713s Selecting previously unselected package r-cran-xtable. 713s Preparing to unpack .../218-r-cran-xtable_1%3a1.8-4-2_all.deb ... 713s Unpacking r-cran-xtable (1:1.8-4-2) ... 713s Selecting previously unselected package r-cran-base64enc. 713s Preparing to unpack .../219-r-cran-base64enc_0.1-3-3_amd64.deb ... 713s Unpacking r-cran-base64enc (0.1-3-3) ... 713s Selecting previously unselected package r-cran-digest. 713s Preparing to unpack .../220-r-cran-digest_0.6.34-1_amd64.deb ... 713s Unpacking r-cran-digest (0.6.34-1) ... 713s Selecting previously unselected package r-cran-ellipsis. 713s Preparing to unpack .../221-r-cran-ellipsis_0.3.2-2_amd64.deb ... 713s Unpacking r-cran-ellipsis (0.3.2-2) ... 713s Selecting previously unselected package r-cran-htmltools. 713s Preparing to unpack .../222-r-cran-htmltools_0.5.7-1_amd64.deb ... 713s Unpacking r-cran-htmltools (0.5.7-1) ... 713s Selecting previously unselected package r-cran-fontawesome. 713s Preparing to unpack .../223-r-cran-fontawesome_0.5.2-1_all.deb ... 713s Unpacking r-cran-fontawesome (0.5.2-1) ... 713s Selecting previously unselected package r-cran-sourcetools. 713s Preparing to unpack .../224-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 713s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 713s Selecting previously unselected package r-cran-commonmark. 713s Preparing to unpack .../225-r-cran-commonmark_1.9.1-1_amd64.deb ... 713s Unpacking r-cran-commonmark (1.9.1-1) ... 713s Selecting previously unselected package r-cran-jquerylib. 713s Preparing to unpack .../226-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 713s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 713s Selecting previously unselected package r-cran-fs. 713s Preparing to unpack .../227-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 713s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 713s Selecting previously unselected package r-cran-sass. 713s Preparing to unpack .../228-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 713s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 713s Selecting previously unselected package r-cran-bslib. 713s Preparing to unpack .../229-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 713s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 713s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 713s Preparing to unpack .../230-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 713s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 713s Selecting previously unselected package r-cran-shiny. 713s Preparing to unpack .../231-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 713s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 714s Selecting previously unselected package r-cran-evaluate. 714s Preparing to unpack .../232-r-cran-evaluate_0.23-1_all.deb ... 714s Unpacking r-cran-evaluate (0.23-1) ... 714s Selecting previously unselected package r-cran-xfun. 714s Preparing to unpack .../233-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 714s Unpacking r-cran-xfun (0.41+dfsg-1) ... 714s Selecting previously unselected package r-cran-highr. 714s Preparing to unpack .../234-r-cran-highr_0.10+dfsg-1_all.deb ... 714s Unpacking r-cran-highr (0.10+dfsg-1) ... 714s Selecting previously unselected package libjs-mathjax. 714s Preparing to unpack .../235-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 714s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 715s Selecting previously unselected package r-cran-knitr. 715s Preparing to unpack .../236-r-cran-knitr_1.45+dfsg-1_all.deb ... 715s Unpacking r-cran-knitr (1.45+dfsg-1) ... 715s Selecting previously unselected package r-cran-tinytex. 715s Preparing to unpack .../237-r-cran-tinytex_0.49-1_all.deb ... 715s Unpacking r-cran-tinytex (0.49-1) ... 715s Selecting previously unselected package libjs-modernizr. 715s Preparing to unpack .../238-libjs-modernizr_2.6.2+ds1-5_all.deb ... 715s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 715s Selecting previously unselected package r-cran-rmarkdown. 715s Preparing to unpack .../239-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 715s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 715s Selecting previously unselected package r-cran-htmlwidgets. 715s Preparing to unpack .../240-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 715s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 715s Selecting previously unselected package r-cran-crosstalk. 715s Preparing to unpack .../241-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 715s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 715s Selecting previously unselected package r-cran-dt. 715s Preparing to unpack .../242-r-cran-dt_0.31+dfsg-1_all.deb ... 715s Unpacking r-cran-dt (0.31+dfsg-1) ... 715s Selecting previously unselected package r-bioc-interactivedisplaybase. 715s Preparing to unpack .../243-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 715s Unpacking r-bioc-interactivedisplaybase 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unselected package r-cran-futile.logger. 715s Preparing to unpack .../249-r-cran-futile.logger_1.4.3-4build1_all.deb ... 715s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 715s Selecting previously unselected package r-cran-snow. 715s Preparing to unpack .../250-r-cran-snow_1%3a0.4.4-2_all.deb ... 715s Unpacking r-cran-snow (1:0.4.4-2) ... 715s Selecting previously unselected package r-cran-codetools. 715s Preparing to unpack .../251-r-cran-codetools_0.2-19-1_all.deb ... 715s Unpacking r-cran-codetools (0.2-19-1) ... 715s Selecting previously unselected package r-cran-bh. 715s Preparing to unpack .../252-r-cran-bh_1.84.0-1_all.deb ... 715s Unpacking r-cran-bh (1.84.0-1) ... 715s Selecting previously unselected package r-bioc-biocparallel. 715s Preparing to unpack .../253-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 715s Unpacking r-bioc-biocparallel (1.36.0-1) ... 715s Selecting previously unselected package r-cran-bookdown. 716s Preparing to unpack .../254-r-cran-bookdown_0.37+dfsg-1_all.deb ... 716s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 716s Selecting previously unselected package tex-common. 716s Preparing to unpack .../255-tex-common_6.18_all.deb ... 716s Unpacking tex-common (6.18) ... 716s Selecting previously unselected package t1utils. 716s Preparing to unpack .../256-t1utils_1.41-4build2_amd64.deb ... 716s Unpacking t1utils (1.41-4build2) ... 716s Selecting previously unselected package texlive-binaries. 716s Preparing to unpack .../257-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 716s Unpacking texlive-binaries (2023.20230311.66589-9) ... 716s Selecting previously unselected package texlive-base. 716s Preparing to unpack .../258-texlive-base_2023.20240207-1_all.deb ... 716s Unpacking texlive-base (2023.20240207-1) ... 717s Selecting previously unselected package texlive-latex-base. 717s Preparing to unpack .../259-texlive-latex-base_2023.20240207-1_all.deb ... 717s Unpacking texlive-latex-base (2023.20240207-1) ... 718s Selecting previously unselected package texlive-bibtex-extra. 718s Preparing to unpack .../260-texlive-bibtex-extra_2023.20240207-1_all.deb ... 718s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 721s Selecting previously unselected package r-bioc-biocstyle. 721s Preparing to unpack .../261-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 721s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 722s Selecting previously unselected package r-cran-xml. 722s Preparing to unpack .../262-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 722s Unpacking r-cran-xml (3.99-0.16.1-1) ... 722s Selecting previously unselected package r-cran-hms. 722s Preparing to unpack .../263-r-cran-hms_1.1.3-1_all.deb ... 722s Unpacking r-cran-hms (1.1.3-1) ... 722s Selecting previously unselected package r-cran-prettyunits. 722s Preparing to unpack .../264-r-cran-prettyunits_1.2.0-1_all.deb ... 722s Unpacking r-cran-prettyunits (1.2.0-1) ... 722s Selecting previously unselected package r-cran-progress. 722s Preparing to unpack .../265-r-cran-progress_1.2.3-1_all.deb ... 722s Unpacking r-cran-progress (1.2.3-1) ... 722s Selecting previously unselected package r-cran-xml2. 722s Preparing to unpack .../266-r-cran-xml2_1.3.6-1_amd64.deb ... 722s Unpacking r-cran-xml2 (1.3.6-1) ... 722s Selecting previously unselected package r-bioc-biomart. 722s Preparing to unpack .../267-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 722s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 722s Selecting previously unselected package r-cran-lattice. 722s Preparing to unpack .../268-r-cran-lattice_0.22-5-1_amd64.deb ... 722s Unpacking r-cran-lattice (0.22-5-1) ... 722s Selecting previously unselected package r-cran-matrix. 722s Preparing to unpack .../269-r-cran-matrix_1.6-5-1_amd64.deb ... 722s Unpacking r-cran-matrix (1.6-5-1) ... 722s Selecting previously unselected package r-cran-matrixstats. 722s Preparing to unpack .../270-r-cran-matrixstats_1.2.0-1_amd64.deb ... 722s Unpacking r-cran-matrixstats (1.2.0-1) ... 722s Selecting previously unselected package r-bioc-matrixgenerics. 722s Preparing to unpack .../271-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 722s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 722s Selecting previously unselected package r-cran-abind. 722s Preparing to unpack .../272-r-cran-abind_1.4-5-2_all.deb ... 722s Unpacking r-cran-abind (1.4-5-2) ... 722s Selecting previously unselected package r-bioc-s4arrays. 722s Preparing to unpack .../273-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 722s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 722s Selecting previously unselected package r-bioc-sparsearray. 722s Preparing to unpack .../274-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 722s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 722s Selecting previously unselected package r-bioc-delayedarray. 722s Preparing to unpack .../275-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 722s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 722s Selecting previously unselected package r-bioc-rhtslib. 722s Preparing to unpack .../276-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 722s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 722s Selecting previously unselected package r-bioc-rsamtools. 722s Preparing to unpack .../277-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 722s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 722s Selecting previously unselected package r-bioc-summarizedexperiment. 722s Preparing to unpack .../278-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 722s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 722s Selecting previously unselected package r-bioc-genomicalignments. 722s Preparing to unpack .../279-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 722s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 723s Selecting previously unselected package r-cran-rjson. 723s Preparing to unpack .../280-r-cran-rjson_0.2.21-1_amd64.deb ... 723s Unpacking r-cran-rjson (0.2.21-1) ... 723s Selecting previously unselected package r-cran-restfulr. 723s Preparing to unpack .../281-r-cran-restfulr_0.0.15-1_amd64.deb ... 723s Unpacking r-cran-restfulr (0.0.15-1) ... 723s Selecting previously unselected package r-bioc-rtracklayer. 723s Preparing to unpack .../282-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 723s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 723s Selecting previously unselected package r-bioc-genomicfeatures. 723s Preparing to unpack .../283-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 723s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 723s Selecting previously unselected package r-bioc-protgenerics. 723s Preparing to unpack .../284-r-bioc-protgenerics_1.34.0-1_all.deb ... 723s Unpacking r-bioc-protgenerics (1.34.0-1) ... 723s Selecting previously unselected package r-bioc-ensembldb. 723s Preparing to unpack .../285-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 723s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 723s Selecting previously unselected package r-bioc-experimenthub. 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727s Setting up texlive-binaries (2023.20230311.66589-9) ... 727s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 727s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 727s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 727s Setting up r-cran-lazyeval (0.2.2-1build1) ... 727s Setting up r-cran-commonmark (1.9.1-1) ... 727s Setting up r-cran-r6 (2.5.1-1) ... 727s Setting up r-cran-pkgkitten (0.2.3-1) ... 727s Setting up texlive-base (2023.20240207-1) ... 728s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 728s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 728s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 729s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 729s Setting up r-cran-magrittr (2.0.3-1) ... 729s Setting up r-cran-rappdirs (0.3.3-1) ... 729s Setting up r-cran-filelock (1.0.3-1) ... 729s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 729s Setting up r-cran-littler (0.3.19-1) ... 729s Setting up r-cran-bh (1.84.0-1) ... 729s Setting up r-cran-fs (1.6.3+dfsg-1) ... 729s Setting up r-cran-rcpp (1.0.12-1) ... 729s Setting up r-cran-curl (5.2.0+dfsg-1) ... 729s Setting up r-cran-codetools (0.2-19-1) ... 729s Setting up g++-13 (13.2.0-17ubuntu2) ... 729s Setting up r-cran-brio (1.1.4-1) ... 729s Setting up r-cran-diffobj (0.3.5-1) ... 729s Setting up r-bioc-biocgenerics (0.48.1-2) ... 729s Setting up r-cran-rlang (1.1.3-1) ... 729s Setting up r-cran-matrixstats (1.2.0-1) ... 729s Setting up littler (0.3.19-1) ... 729s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 729s Setting up r-cran-xfun (0.41+dfsg-1) ... 729s Setting up r-cran-sys (3.4.2-1) ... 729s Setting up r-cran-plogr (0.2.0-3build1) ... 729s Setting up r-cran-withr (2.5.0-1) ... 729s Setting up r-cran-processx 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in auto mode 729s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 729s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 729s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 729s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 729s Setting up r-cran-bitops (1.0-7-1) ... 729s Setting up r-bioc-biocversion (3.18.1-1) ... 729s Setting up r-cran-rprojroot (2.0.4-1) ... 729s Setting up r-cran-bit64 (4.0.5-1) ... 729s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 729s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 729s Setting up r-cran-askpass (1.2.0-1) ... 729s Setting up r-cran-fastmap (1.1.1-1) ... 729s Setting up r-cran-png (0.1-8-1) ... 729s Setting up r-bioc-biobase (2.62.0-1) ... 729s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 729s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 729s Setting up r-cran-utf8 (1.2.4-1) ... 729s Setting up r-cran-stringi (1.8.3-1) ... 729s Setting up texlive-latex-base (2023.20240207-1) ... 729s Setting up r-cran-cpp11 (0.4.7-1) ... 729s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 729s Setting up r-cran-futile.logger (1.4.3-4build1) ... 729s Setting up r-cran-later (1.3.2+dfsg-1) ... 729s Setting up r-cran-matrix (1.6-5-1) ... 729s Setting up r-cran-tinytex (0.49-1) ... 729s Setting up r-cran-knitr (1.45+dfsg-1) ... 729s Setting up g++ (4:13.2.0-7ubuntu1) ... 729s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 729s Setting up r-cran-cachem (1.0.8-1) ... 729s Setting up build-essential (12.10ubuntu1) ... 729s Setting up r-bioc-iranges (2.36.0-1) ... 729s Setting up r-cran-rjson (0.2.21-1) ... 729s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 729s Setting up r-cran-restfulr (0.0.15-1) ... 729s Setting up r-cran-vctrs (0.6.5-1) ... 729s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 729s Setting up r-cran-ellipsis (0.3.2-2) ... 729s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 729s Setting up r-base-dev (4.3.2-1build1) ... 729s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 729s Setting up r-cran-stringr (1.5.1-1) ... 729s Setting up r-bioc-biocparallel (1.36.0-1) ... 729s Setting up r-cran-callr (3.7.3-2) ... 729s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 729s Setting up r-cran-desc (1.4.3-1) ... 729s Setting up r-cran-xml2 (1.3.6-1) ... 729s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 729s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 729s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 729s Setting up texlive-bibtex-extra (2023.20240207-1) ... 729s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 729s Setting up r-cran-httr (1.4.7+dfsg-1) ... 729s Setting up r-cran-hms (1.1.3-1) ... 729s Setting up r-cran-memoise (2.0.1-1) ... 729s Setting up r-cran-promises (1.2.1+dfsg-1) ... 729s Setting up r-cran-purrr (1.0.2-1) ... 729s Setting up r-cran-blob (1.2.4-1) ... 729s Setting up r-cran-htmltools (0.5.7-1) ... 729s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 729s Setting up r-bioc-xvector (0.42.0-1) ... 729s Setting up r-cran-pkgbuild (1.4.3-1) ... 729s Setting up r-cran-sass (0.4.8+dfsg-1) ... 729s Setting up r-cran-dplyr (1.1.4-1) ... 729s Setting up r-cran-rsqlite (2.3.4-1) ... 729s Setting up r-cran-progress (1.2.3-1) ... 729s Setting up r-cran-pkgload (1.3.4-1) ... 729s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 729s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 729s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 729s Setting up r-cran-rematch2 (2.1.2-2build1) ... 729s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 729s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 729s Setting up r-cran-fontawesome (0.5.2-1) ... 729s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 729s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 729s Setting up r-cran-waldo (0.5.2-1build1) ... 729s Setting up r-cran-tidyr (1.3.1-1) ... 729s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 729s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 729s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 729s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 729s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 729s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 729s Setting up r-bioc-annotationdbi (1.64.1-1) ... 729s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 729s Setting up r-cran-testthat (3.2.1-1) ... 729s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 729s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 729s Setting up r-bioc-genomicalignments (1.38.2-1) ... 729s Setting up r-cran-bookdown (0.37+dfsg-1) ... 729s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 729s Setting up r-bioc-rtracklayer (1.62.0-1) ... 729s Setting up r-bioc-singlecellexperiment (1.24.0+ds-1) ... 729s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 729s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 729s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 729s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 729s Setting up r-cran-dt (0.31+dfsg-1) ... 729s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 729s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 729s Setting up r-bioc-experimenthub (2.10.0+ds-1) ... 729s Setting up r-bioc-scrnaseq (2.16.0+ds-1) ... 729s Processing triggers for man-db (2.12.0-3) ... 731s Processing triggers for install-info (7.1-3) ... 731s Processing triggers for libc-bin (2.39-0ubuntu2) ... 731s Processing triggers for tex-common (6.18) ... 731s Running updmap-sys. This may take some time... done. 731s Running mktexlsr /var/lib/texmf ... done. 732s Building format(s) --all. 763s This may take some time... done. 766s Reading package lists... 766s Building dependency tree... 766s Reading state information... 766s Starting pkgProblemResolver with broken count: 0 766s Starting 2 pkgProblemResolver with broken count: 0 766s Done 767s The following NEW packages will be installed: 767s autopkgtest-satdep 767s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 767s Need to get 0 B/700 B of archives. 767s After this operation, 0 B of additional disk space will be used. 767s Get:1 /tmp/autopkgtest.aQSxoX/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 767s Selecting previously unselected package autopkgtest-satdep. 767s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 123370 files and directories currently installed.) 767s Preparing to unpack .../2-autopkgtest-satdep.deb ... 767s Unpacking autopkgtest-satdep (0) ... 767s Setting up autopkgtest-satdep (0) ... 769s (Reading database ... 123370 files and directories currently installed.) 769s Removing autopkgtest-satdep (0) ... 769s autopkgtest [05:01:40]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 769s autopkgtest [05:01:40]: test pkg-r-autopkgtest: [----------------------- 769s Test: Try to load the R library scRNAseq 769s 769s R version 4.3.2 (2023-10-31) -- "Eye Holes" 769s Copyright (C) 2023 The R Foundation for Statistical Computing 769s Platform: x86_64-pc-linux-gnu (64-bit) 769s 769s R is free software and comes with ABSOLUTELY NO WARRANTY. 769s You are welcome to redistribute it under certain conditions. 769s Type 'license()' or 'licence()' for distribution details. 769s 769s R is a collaborative project with many contributors. 769s Type 'contributors()' for more information and 769s 'citation()' on how to cite R or R packages in publications. 769s 769s Type 'demo()' for some demos, 'help()' for on-line help, or 769s 'help.start()' for an HTML browser interface to help. 769s Type 'q()' to quit R. 769s 769s > library('scRNAseq') 769s Loading required package: SingleCellExperiment 769s Loading required package: SummarizedExperiment 769s Loading required package: MatrixGenerics 769s Loading required package: matrixStats 770s 770s Attaching package: ‘MatrixGenerics’ 770s 770s The following objects are masked from ‘package:matrixStats’: 770s 770s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 770s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 770s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 770s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 770s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 770s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 770s colWeightedMeans, colWeightedMedians, colWeightedSds, 770s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 770s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 770s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 770s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 770s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 770s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 770s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 770s rowWeightedSds, rowWeightedVars 770s 770s Loading required package: GenomicRanges 770s Loading required package: stats4 770s Loading required package: BiocGenerics 770s 770s Attaching package: ‘BiocGenerics’ 770s 770s The following objects are masked from ‘package:stats’: 770s 770s IQR, mad, sd, var, xtabs 770s 770s The following objects are masked from ‘package:base’: 770s 770s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 770s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 770s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 770s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 770s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 770s table, tapply, union, unique, unsplit, which.max, which.min 770s 770s Loading required package: S4Vectors 770s 770s Attaching package: ‘S4Vectors’ 770s 770s The following object is masked from ‘package:utils’: 770s 770s findMatches 770s 770s The following objects are masked from ‘package:base’: 770s 770s expand.grid, I, unname 770s 770s Loading required package: IRanges 772s Loading required package: GenomeInfoDb 772s Loading required package: Biobase 772s Welcome to Bioconductor 772s 772s Vignettes contain introductory material; view with 772s 'browseVignettes()'. To cite Bioconductor, see 772s 'citation("Biobase")', and for packages 'citation("pkgname")'. 772s 772s 772s Attaching package: ‘Biobase’ 772s 772s The following object is masked from ‘package:MatrixGenerics’: 772s 772s rowMedians 772s 772s The following objects are masked from ‘package:matrixStats’: 772s 772s anyMissing, rowMedians 772s 781s > 781s > 781s Other tests are currently unsupported! 781s They will be progressively added. 781s autopkgtest [05:01:52]: test pkg-r-autopkgtest: -----------------------] 781s pkg-r-autopkgtest PASS 781s autopkgtest [05:01:52]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 781s autopkgtest [05:01:52]: @@@@@@@@@@@@@@@@@@@@ summary 781s pkg-r-autopkgtest PASS 792s Creating nova instance adt-noble-i386-r-bioc-scrnaseq-20240322-044851-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...