0s autopkgtest [04:05:59]: starting date and time: 2024-03-22 04:05:59+0000
  0s autopkgtest [04:05:59]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [04:05:59]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.vu8m7obd/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-saturn --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-13.secgroup --name adt-noble-i386-r-bioc-saturn-20240322-040559-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
330s autopkgtest [04:11:29]: testbed dpkg architecture: amd64
330s autopkgtest [04:11:29]: testbed apt version: 2.7.12
330s autopkgtest [04:11:29]: test architecture: i386
330s autopkgtest [04:11:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup
330s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
330s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3757 kB]
330s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB]
330s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
330s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB]
330s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [460 kB]
330s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [696 kB]
330s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B]
330s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B]
330s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB]
330s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B]
330s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1277 kB]
330s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4267 kB]
330s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B]
330s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB]
330s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB]
330s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B]
334s Fetched 11.3 MB in 2s (7513 kB/s)
334s Reading package lists...
336s Reading package lists...
336s Building dependency tree...
336s Reading state information...
336s Calculating upgrade...
337s The following packages will be upgraded:
337s   cloud-init fonts-ubuntu-console python3-markupsafe
337s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
337s Need to get 629 kB of archives.
337s After this operation, 11.3 kB disk space will be freed.
337s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB]
337s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB]
337s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB]
337s Preconfiguring packages ...
337s Fetched 629 kB in 0s (13.7 MB/s)
337s (Reading database ... 
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71865 files and directories currently installed.)
337s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ...
337s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ...
338s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ...
338s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ...
338s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ...
338s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ...
338s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ...
338s Setting up cloud-init (24.1.2-0ubuntu1) ...
340s Setting up python3-markupsafe (2.1.5-1build1) ...
340s Processing triggers for man-db (2.12.0-3) ...
340s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
341s Reading package lists...
341s Building dependency tree...
341s Reading state information...
341s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
342s sh: Attempting to set up Debian/Ubuntu apt sources automatically
342s sh: Distribution appears to be Ubuntu
343s Reading package lists...
343s Building dependency tree...
343s Reading state information...
343s eatmydata is already the newest version (131-1).
343s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
343s Reading package lists...
344s Building dependency tree...
344s Reading state information...
344s dbus is already the newest version (1.14.10-4ubuntu1).
344s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
344s Reading package lists...
344s Building dependency tree...
344s Reading state information...
345s rng-tools-debian is already the newest version (2.4).
345s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
345s Reading package lists...
345s Building dependency tree...
345s Reading state information...
345s The following packages will be REMOVED:
345s   cloud-init* python3-configobj* python3-debconf*
346s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
346s After this operation, 3256 kB disk space will be freed.
346s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71864 files and directories currently installed.)
346s Removing cloud-init (24.1.2-0ubuntu1) ...
346s Removing python3-configobj (5.0.8-3) ...
346s Removing python3-debconf (1.5.86) ...
346s Processing triggers for man-db (2.12.0-3) ...
347s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71475 files and directories currently installed.)
347s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
347s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
347s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
347s invoke-rc.d: policy-rc.d denied execution of try-restart.
348s Reading package lists...
348s Building dependency tree...
348s Reading state information...
348s linux-generic is already the newest version (6.8.0-11.11+1).
348s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
348s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
348s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
348s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
351s Reading package lists...
351s Reading package lists...
351s Building dependency tree...
351s Reading state information...
351s Calculating upgrade...
351s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
351s Reading package lists...
352s Building dependency tree...
352s Reading state information...
352s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
352s autopkgtest [04:11:51]: rebooting testbed after setup commands that affected boot
614s autopkgtest [04:16:13]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024
615s autopkgtest [04:16:14]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-saturn
617s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-saturn 1.10.0+dfsg-1 (dsc) [2221 B]
617s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-saturn 1.10.0+dfsg-1 (tar) [2943 kB]
617s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-saturn 1.10.0+dfsg-1 (diff) [5364 B]
617s gpgv: Signature made Thu Nov 30 14:05:38 2023 UTC
617s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
617s gpgv:                issuer "tillea@rki.de"
617s gpgv: Can't check signature: No public key
617s dpkg-source: warning: cannot verify inline signature for ./r-bioc-saturn_1.10.0+dfsg-1.dsc: no acceptable signature found
617s autopkgtest [04:16:16]: testing package r-bioc-saturn version 1.10.0+dfsg-1
617s autopkgtest [04:16:16]: build not needed
618s autopkgtest [04:16:17]: test pkg-r-autopkgtest: preparing testbed
624s Note, using file '/tmp/autopkgtest.1ILdF6/1-autopkgtest-satdep.dsc' to get the build dependencies
624s Reading package lists...
624s Building dependency tree...
624s Reading state information...
624s Starting pkgProblemResolver with broken count: 0
624s Starting 2 pkgProblemResolver with broken count: 0
624s Done
625s The following NEW packages will be installed:
625s   build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu
625s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
625s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
625s   g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13
625s   gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13
625s   gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools
625s   javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev
625s   libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev
625s   libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1
625s   libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3
625s   libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23
625s   libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
625s   libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
625s   libjs-highlight.js libjs-jquery libjs-jquery-datatables
625s   libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui
625s   libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr
625s   libjs-popper.js libjs-prettify libjs-sifter.js
625s   libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3
625s   liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3
625s   libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0
625s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0
625s   libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev
625s   libpotrace0 libptexenc1 libquadmath0 libreadline-dev libsharpyuv0 libsm6
625s   libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data
625s   libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7
625s   libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1
625s   libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass
625s   node-html5shiv node-normalize.css pandoc pandoc-data pkg-config
625s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate
625s   r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub
625s   r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio
625s   r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart
625s   r-bioc-biostrings r-bioc-delayedarray r-bioc-deseq2 r-bioc-dexseq
625s   r-bioc-edger r-bioc-ensembldb r-bioc-genefilter r-bioc-geneplotter
625s   r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
625s   r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-interactivedisplaybase
625s   r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics
625s   r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer
625s   r-bioc-s4arrays r-bioc-s4vectors r-bioc-saturn r-bioc-sparsearray
625s   r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind
625s   r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit
625s   r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-boot
625s   r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli
625s   r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-covr
625s   r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi
625s   r-cran-dbplyr r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr
625s   r-cran-dt r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver
625s   r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs
625s   r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2
625s   r-cran-glue r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools
625s   r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-hwriter r-cran-isoband
625s   r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling
625s   r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle
625s   r-cran-littler r-cran-locfdr r-cran-locfit r-cran-magrittr r-cran-mass
625s   r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime
625s   r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pbapply r-cran-pillar
625s   r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload
625s   r-cran-plogr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx
625s   r-cran-progress r-cran-promises r-cran-ps r-cran-purrr r-cran-r6
625s   r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo
625s   r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rex r-cran-rjson
625s   r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass
625s   r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod
625s   r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-testthat
625s   r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8
625s   r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun
625s   r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils
625s   tex-common texlive-base texlive-bibtex-extra texlive-binaries
625s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
625s 0 upgraded, 330 newly installed, 0 to remove and 0 not upgraded.
625s Need to get 469 MB of archives.
625s After this operation, 1418 MB of additional disk space will be used.
625s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB]
625s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB]
625s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB]
625s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB]
625s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB]
625s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB]
625s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB]
625s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB]
625s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB]
625s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB]
625s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B]
625s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
625s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
625s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB]
625s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB]
625s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB]
625s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB]
625s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB]
625s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB]
625s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB]
625s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB]
625s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB]
625s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB]
625s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB]
625s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB]
625s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB]
625s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
625s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
625s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB]
625s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB]
626s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB]
626s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
626s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
626s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
626s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB]
626s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
626s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
626s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB]
626s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB]
626s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB]
626s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
626s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
626s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB]
626s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
626s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB]
626s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB]
626s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB]
626s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB]
626s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B]
626s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B]
626s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB]
626s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B]
626s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB]
626s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB]
626s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB]
626s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB]
626s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB]
626s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB]
626s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B]
626s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB]
626s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB]
626s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB]
626s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B]
626s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB]
626s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB]
626s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB]
626s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB]
626s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB]
626s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB]
626s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
626s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB]
626s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB]
626s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB]
626s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB]
626s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
626s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
626s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
626s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
626s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
626s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
626s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB]
626s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
626s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
626s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
626s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
626s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB]
626s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
626s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
626s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
626s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
626s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
626s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
626s Get:93 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
626s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB]
626s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB]
626s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB]
626s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB]
626s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB]
626s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB]
626s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB]
626s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB]
626s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB]
626s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB]
626s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB]
626s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB]
626s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B]
626s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB]
626s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB]
626s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B]
626s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB]
626s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB]
626s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB]
626s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB]
626s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB]
626s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB]
626s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB]
626s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB]
626s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB]
626s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB]
626s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB]
626s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB]
626s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB]
626s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB]
626s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB]
626s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB]
626s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB]
626s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B]
626s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB]
626s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB]
626s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB]
626s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB]
626s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB]
626s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB]
626s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB]
626s Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB]
626s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB]
626s Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
626s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB]
626s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB]
626s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B]
626s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
627s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
627s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB]
627s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB]
627s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB]
627s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB]
627s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB]
627s Get:148 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B]
627s Get:149 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB]
627s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B]
627s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
627s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
627s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB]
627s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB]
627s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB]
627s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB]
627s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB]
627s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB]
627s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB]
627s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB]
627s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB]
627s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
627s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
627s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB]
627s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB]
627s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB]
627s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB]
627s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
627s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB]
627s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB]
627s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB]
627s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB]
627s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB]
627s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB]
627s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB]
627s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB]
627s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB]
627s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB]
627s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
627s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB]
627s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
627s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB]
627s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB]
627s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB]
627s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
627s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
627s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB]
627s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB]
627s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB]
627s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB]
627s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB]
627s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB]
627s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB]
627s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB]
627s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB]
627s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB]
627s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB]
627s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
627s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB]
627s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
627s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
627s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB]
627s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB]
627s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB]
627s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB]
627s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB]
627s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB]
627s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB]
627s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB]
627s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB]
628s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB]
628s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB]
628s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB]
628s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocversion all 3.18.1-1 [11.0 kB]
628s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB]
628s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB]
628s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
628s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB]
628s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB]
628s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB]
628s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB]
628s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB]
628s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB]
628s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB]
628s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB]
628s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB]
628s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
628s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB]
628s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
628s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB]
628s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB]
628s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB]
628s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
628s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB]
628s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB]
628s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB]
628s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB]
628s Get:238 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
628s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB]
628s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB]
628s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB]
628s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB]
628s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB]
628s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB]
628s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dt all 0.31+dfsg-1 [265 kB]
628s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB]
628s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB]
628s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB]
628s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB]
628s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB]
628s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
628s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
628s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB]
628s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB]
628s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B]
628s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB]
628s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB]
628s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB]
628s Get:259 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB]
628s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB]
628s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB]
628s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB]
628s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB]
629s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB]
629s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB]
629s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB]
629s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB]
629s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB]
629s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB]
629s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB]
629s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB]
629s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB]
629s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB]
629s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB]
629s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB]
629s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB]
629s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB]
629s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB]
629s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-locfit amd64 1.5-9.8-1 [513 kB]
629s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB]
629s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
629s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB]
629s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB]
629s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB]
629s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB]
629s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
629s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB]
629s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB]
629s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
629s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB]
629s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB]
629s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB]
629s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpparmadillo amd64 0.12.8.0.0-1 [862 kB]
629s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-deseq2 amd64 1.42.0+dfsg-1 [1226 kB]
629s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hwriter all 1.3.2.1-1 [106 kB]
629s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB]
629s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB]
629s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB]
629s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-geneplotter all 1.80.0+dfsg-1 [1416 kB]
629s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB]
629s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genefilter amd64 1.84.0-1 [1123 kB]
629s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-dexseq all 1.48.0+dfsg-1 [464 kB]
629s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-limma amd64 3.58.1+dfsg-1 [1899 kB]
629s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-edger amd64 4.0.16+dfsg-1 [1149 kB]
629s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB]
629s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB]
629s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB]
629s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB]
629s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB]
629s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-protgenerics all 1.34.0-1 [225 kB]
629s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB]
629s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-locfdr all 1.1-8-2 [306 kB]
629s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB]
629s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-boot all 1.3-30-1 [619 kB]
629s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-saturn all 1.10.0+dfsg-1 [2954 kB]
630s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB]
630s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB]
630s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB]
630s Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB]
630s Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rex all 1.2.1-1 [129 kB]
630s Get:321 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB]
630s Get:322 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB]
630s Get:323 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB]
630s Get:324 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB]
630s Get:325 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB]
630s Get:326 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB]
630s Get:327 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
630s Get:328 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB]
630s Get:329 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB]
630s Get:330 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB]
630s Preconfiguring packages ...
630s Fetched 469 MB in 5s (103 MB/s)
630s Selecting previously unselected package libc-dev-bin.
631s (Reading database ... 
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71420 files and directories currently installed.)
631s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ...
631s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
631s Selecting previously unselected package linux-libc-dev:amd64.
631s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ...
631s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ...
631s Selecting previously unselected package libcrypt-dev:amd64.
631s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ...
631s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ...
631s Selecting previously unselected package libtirpc-dev:amd64.
631s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ...
631s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
631s Selecting previously unselected package libnsl-dev:amd64.
631s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ...
631s Unpacking libnsl-dev:amd64 (1.3.0-3) ...
631s Selecting previously unselected package rpcsvc-proto.
631s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ...
631s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
631s Selecting previously unselected package libc6-dev:amd64.
631s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ...
631s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ...
631s Selecting previously unselected package libisl23:amd64.
631s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ...
631s Unpacking libisl23:amd64 (0.26-3) ...
631s Selecting previously unselected package libmpc3:amd64.
631s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ...
631s Unpacking libmpc3:amd64 (1.3.1-1) ...
631s Selecting previously unselected package cpp-13-x86-64-linux-gnu.
631s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
631s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
631s Selecting previously unselected package cpp-13.
631s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ...
631s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
631s Selecting previously unselected package cpp-x86-64-linux-gnu.
631s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
631s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
632s Selecting previously unselected package cpp.
632s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ...
632s Unpacking cpp (4:13.2.0-7ubuntu1) ...
632s Selecting previously unselected package libcc1-0:amd64.
632s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ...
632s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ...
632s Selecting previously unselected package libgomp1:amd64.
632s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ...
632s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ...
632s Selecting previously unselected package libitm1:amd64.
632s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ...
632s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ...
632s Selecting previously unselected package libatomic1:amd64.
632s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ...
632s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ...
632s Selecting previously unselected package libasan8:amd64.
632s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ...
632s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ...
632s Selecting previously unselected package liblsan0:amd64.
632s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ...
632s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ...
632s Selecting previously unselected package libtsan2:amd64.
632s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ...
632s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ...
632s Selecting previously unselected package libubsan1:amd64.
632s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ...
632s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ...
632s Selecting previously unselected package libhwasan0:amd64.
632s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ...
632s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ...
632s Selecting previously unselected package libquadmath0:amd64.
632s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ...
632s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ...
632s Selecting previously unselected package libgcc-13-dev:amd64.
632s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ...
632s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
632s Selecting previously unselected package gcc-13-x86-64-linux-gnu.
632s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
632s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
633s Selecting previously unselected package gcc-13.
633s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ...
633s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
633s Selecting previously unselected package gcc-x86-64-linux-gnu.
633s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
633s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
633s Selecting previously unselected package gcc.
633s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ...
633s Unpacking gcc (4:13.2.0-7ubuntu1) ...
633s Selecting previously unselected package libstdc++-13-dev:amd64.
633s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ...
633s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
633s Selecting previously unselected package g++-13-x86-64-linux-gnu.
633s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
633s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
633s Selecting previously unselected package g++-13.
633s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ...
633s Unpacking g++-13 (13.2.0-17ubuntu2) ...
633s Selecting previously unselected package g++-x86-64-linux-gnu.
633s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
633s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
633s Selecting previously unselected package g++.
633s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ...
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634s Selecting previously unselected package fonts-lmodern.
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634s Selecting previously unselected package libgfortran5:amd64.
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637s Selecting previously unselected package libgraphite2-3:amd64.
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637s Selecting previously unselected package libice6:amd64.
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640s Preparing to unpack .../136-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
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640s Selecting previously unselected package r-base-core.
640s Preparing to unpack .../137-r-base-core_4.3.2-1build1_amd64.deb ...
640s Unpacking r-base-core (4.3.2-1build1) ...
641s Selecting previously unselected package r-cran-littler.
641s Preparing to unpack .../138-r-cran-littler_0.3.19-1_amd64.deb ...
641s Unpacking r-cran-littler (0.3.19-1) ...
641s Selecting previously unselected package littler.
641s Preparing to unpack .../139-littler_0.3.19-1_all.deb ...
641s Unpacking littler (0.3.19-1) ...
641s Selecting previously unselected package node-bootstrap-sass.
641s Preparing to unpack .../140-node-bootstrap-sass_3.4.3-2_all.deb ...
641s Unpacking node-bootstrap-sass (3.4.3-2) ...
641s Selecting previously unselected package node-html5shiv.
641s Preparing to unpack .../141-node-html5shiv_3.7.3+dfsg-5_all.deb ...
641s Unpacking node-html5shiv (3.7.3+dfsg-5) ...
641s Selecting previously unselected package node-normalize.css.
641s Preparing to unpack .../142-node-normalize.css_8.0.1-5_all.deb ...
641s Unpacking node-normalize.css (8.0.1-5) ...
641s Selecting previously unselected package pandoc-data.
641s Preparing to unpack .../143-pandoc-data_3.1.3-1_all.deb ...
641s Unpacking pandoc-data (3.1.3-1) ...
641s Selecting previously unselected package pandoc.
641s Preparing to unpack .../144-pandoc_3.1.3+ds-2_amd64.deb ...
641s Unpacking pandoc (3.1.3+ds-2) ...
642s Selecting previously unselected package pkgconf-bin.
642s Preparing to unpack .../145-pkgconf-bin_1.8.1-2_amd64.deb ...
642s Unpacking pkgconf-bin (1.8.1-2) ...
642s Selecting previously unselected package pkgconf:amd64.
642s Preparing to unpack .../146-pkgconf_1.8.1-2_amd64.deb ...
642s Unpacking pkgconf:amd64 (1.8.1-2) ...
642s Selecting previously unselected package pkg-config:amd64.
642s Preparing to unpack .../147-pkg-config_1.8.1-2_amd64.deb ...
642s Unpacking pkg-config:amd64 (1.8.1-2) ...
642s Selecting previously unselected package liblzma-dev:amd64.
642s Preparing to unpack .../148-liblzma-dev_5.4.5-0.3_amd64.deb ...
642s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ...
642s Selecting previously unselected package r-base-dev.
642s Preparing to unpack .../149-r-base-dev_4.3.2-1build1_all.deb ...
642s Unpacking r-base-dev (4.3.2-1build1) ...
642s Selecting previously unselected package pkg-r-autopkgtest.
642s Preparing to unpack .../150-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
642s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
642s Selecting previously unselected package r-bioc-biocgenerics.
642s Preparing to unpack .../151-r-bioc-biocgenerics_0.48.1-2_all.deb ...
642s Unpacking r-bioc-biocgenerics (0.48.1-2) ...
642s Selecting previously unselected package r-bioc-biobase.
642s Preparing to unpack .../152-r-bioc-biobase_2.62.0-1_amd64.deb ...
642s Unpacking r-bioc-biobase (2.62.0-1) ...
642s Selecting previously unselected package r-bioc-s4vectors.
642s Preparing to unpack .../153-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ...
642s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ...
642s Selecting previously unselected package r-bioc-iranges.
642s Preparing to unpack .../154-r-bioc-iranges_2.36.0-1_amd64.deb ...
642s Unpacking r-bioc-iranges (2.36.0-1) ...
642s Selecting previously unselected package r-cran-dbi.
642s Preparing to unpack .../155-r-cran-dbi_1.2.2-1_all.deb ...
642s Unpacking r-cran-dbi (1.2.2-1) ...
642s Selecting previously unselected package r-cran-bit.
642s Preparing to unpack .../156-r-cran-bit_4.0.5-1_amd64.deb ...
642s Unpacking r-cran-bit (4.0.5-1) ...
642s Selecting previously unselected package r-cran-bit64.
642s Preparing to unpack .../157-r-cran-bit64_4.0.5-1_amd64.deb ...
642s Unpacking r-cran-bit64 (4.0.5-1) ...
642s Selecting previously unselected package r-cran-rlang.
642s Preparing to unpack .../158-r-cran-rlang_1.1.3-1_amd64.deb ...
642s Unpacking r-cran-rlang (1.1.3-1) ...
642s Selecting previously unselected package r-cran-cli.
642s Preparing to unpack .../159-r-cran-cli_3.6.2-1_amd64.deb ...
642s Unpacking r-cran-cli (3.6.2-1) ...
642s Selecting previously unselected package r-cran-glue.
642s Preparing to unpack .../160-r-cran-glue_1.7.0-1_amd64.deb ...
642s Unpacking r-cran-glue (1.7.0-1) ...
643s Selecting previously unselected package r-cran-lifecycle.
643s Preparing to unpack .../161-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
643s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
643s Selecting previously unselected package r-cran-vctrs.
643s Preparing to unpack .../162-r-cran-vctrs_0.6.5-1_amd64.deb ...
643s Unpacking r-cran-vctrs (0.6.5-1) ...
643s Selecting previously unselected package r-cran-blob.
643s Preparing to unpack .../163-r-cran-blob_1.2.4-1_all.deb ...
643s Unpacking r-cran-blob (1.2.4-1) ...
643s Selecting previously unselected package r-cran-fastmap.
643s Preparing to unpack .../164-r-cran-fastmap_1.1.1-1_amd64.deb ...
643s Unpacking r-cran-fastmap (1.1.1-1) ...
643s Selecting previously unselected package r-cran-cachem.
643s Preparing to unpack .../165-r-cran-cachem_1.0.8-1_amd64.deb ...
643s Unpacking r-cran-cachem (1.0.8-1) ...
643s Selecting previously unselected package r-cran-memoise.
643s Preparing to unpack .../166-r-cran-memoise_2.0.1-1_all.deb ...
643s Unpacking r-cran-memoise (2.0.1-1) ...
643s Selecting previously unselected package r-cran-pkgconfig.
643s Preparing to unpack .../167-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
643s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
643s Selecting previously unselected package r-cran-plogr.
643s Preparing to unpack .../168-r-cran-plogr_0.2.0-3build1_all.deb ...
643s Unpacking r-cran-plogr (0.2.0-3build1) ...
643s Selecting previously unselected package r-cran-cpp11.
643s Preparing to unpack .../169-r-cran-cpp11_0.4.7-1_all.deb ...
643s Unpacking r-cran-cpp11 (0.4.7-1) ...
643s Selecting previously unselected package r-cran-rsqlite.
643s Preparing to unpack .../170-r-cran-rsqlite_2.3.4-1_amd64.deb ...
643s Unpacking r-cran-rsqlite (2.3.4-1) ...
643s Selecting previously unselected package r-cran-curl.
643s Preparing to unpack .../171-r-cran-curl_5.2.0+dfsg-1_amd64.deb ...
643s Unpacking r-cran-curl (5.2.0+dfsg-1) ...
643s Selecting previously unselected package r-cran-jsonlite.
643s Preparing to unpack .../172-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ...
643s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ...
643s Selecting previously unselected package r-cran-mime.
643s Preparing to unpack .../173-r-cran-mime_0.12-1_amd64.deb ...
643s Unpacking r-cran-mime (0.12-1) ...
643s Selecting previously unselected package r-cran-sys.
643s Preparing to unpack .../174-r-cran-sys_3.4.2-1_amd64.deb ...
643s Unpacking r-cran-sys (3.4.2-1) ...
643s Selecting previously unselected package r-cran-askpass.
643s Preparing to unpack .../175-r-cran-askpass_1.2.0-1_amd64.deb ...
643s Unpacking r-cran-askpass (1.2.0-1) ...
643s Selecting previously unselected package r-cran-openssl.
643s Preparing to unpack .../176-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ...
643s Unpacking r-cran-openssl (2.1.1+dfsg-2) ...
643s Selecting previously unselected package r-cran-r6.
643s Preparing to unpack .../177-r-cran-r6_2.5.1-1_all.deb ...
643s Unpacking r-cran-r6 (2.5.1-1) ...
643s Selecting previously unselected package r-cran-httr.
643s Preparing to unpack .../178-r-cran-httr_1.4.7+dfsg-1_all.deb ...
643s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
643s Selecting previously unselected package r-cran-png.
643s Preparing to unpack .../179-r-cran-png_0.1-8-1_amd64.deb ...
643s Unpacking r-cran-png (0.1-8-1) ...
643s Selecting previously unselected package r-bioc-zlibbioc.
643s Preparing to unpack .../180-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ...
643s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ...
643s Selecting previously unselected package r-bioc-xvector.
643s Preparing to unpack .../181-r-bioc-xvector_0.42.0-1_amd64.deb ...
643s Unpacking r-bioc-xvector (0.42.0-1) ...
643s Selecting previously unselected package r-cran-bitops.
643s Preparing to unpack .../182-r-cran-bitops_1.0-7-1_amd64.deb ...
643s Unpacking r-cran-bitops (1.0-7-1) ...
643s Selecting previously unselected package r-cran-rcurl.
643s Preparing to unpack .../183-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ...
643s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ...
644s Selecting previously unselected package r-bioc-genomeinfodbdata.
644s Preparing to unpack .../184-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ...
644s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ...
644s Selecting previously unselected package r-bioc-genomeinfodb.
644s Preparing to unpack .../185-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ...
644s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
644s Selecting previously unselected package r-cran-crayon.
644s Preparing to unpack .../186-r-cran-crayon_1.5.2-1_all.deb ...
644s Unpacking r-cran-crayon (1.5.2-1) ...
644s Selecting previously unselected package r-bioc-biostrings.
644s Preparing to unpack .../187-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ...
644s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ...
644s Selecting previously unselected package r-bioc-keggrest.
644s Preparing to unpack .../188-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ...
644s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ...
644s Selecting previously unselected package r-bioc-annotationdbi.
644s Preparing to unpack .../189-r-bioc-annotationdbi_1.64.1-1_all.deb ...
644s Unpacking r-bioc-annotationdbi (1.64.1-1) ...
644s Selecting previously unselected package r-cran-xml.
644s Preparing to unpack .../190-r-cran-xml_3.99-0.16.1-1_amd64.deb ...
644s Unpacking r-cran-xml (3.99-0.16.1-1) ...
644s Selecting previously unselected package r-cran-xtable.
644s Preparing to unpack .../191-r-cran-xtable_1%3a1.8-4-2_all.deb ...
644s Unpacking r-cran-xtable (1:1.8-4-2) ...
644s Selecting previously unselected package r-bioc-annotate.
644s Preparing to unpack .../192-r-bioc-annotate_1.80.0+dfsg-1_all.deb ...
644s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ...
644s Selecting previously unselected package r-bioc-genomicranges.
644s Preparing to unpack .../193-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ...
644s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ...
644s Selecting previously unselected package r-cran-lazyeval.
644s Preparing to unpack .../194-r-cran-lazyeval_0.2.2-1build1_amd64.deb ...
644s Unpacking r-cran-lazyeval (0.2.2-1build1) ...
644s Selecting previously unselected package r-bioc-annotationfilter.
644s Preparing to unpack .../195-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ...
644s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ...
644s Selecting previously unselected package r-cran-generics.
644s Preparing to unpack .../196-r-cran-generics_0.1.3-1_all.deb ...
644s Unpacking r-cran-generics (0.1.3-1) ...
644s Selecting previously unselected package r-cran-magrittr.
644s Preparing to unpack .../197-r-cran-magrittr_2.0.3-1_amd64.deb ...
644s Unpacking r-cran-magrittr (2.0.3-1) ...
644s Selecting previously unselected package r-cran-fansi.
644s Preparing to unpack .../198-r-cran-fansi_1.0.5-1_amd64.deb ...
644s Unpacking r-cran-fansi (1.0.5-1) ...
644s Selecting previously unselected package r-cran-utf8.
644s Preparing to unpack .../199-r-cran-utf8_1.2.4-1_amd64.deb ...
644s Unpacking r-cran-utf8 (1.2.4-1) ...
645s Selecting previously unselected package r-cran-pillar.
645s Preparing to unpack .../200-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
645s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
645s Selecting previously unselected package r-cran-tibble.
645s Preparing to unpack .../201-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ...
645s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
645s Selecting previously unselected package r-cran-withr.
645s Preparing to unpack .../202-r-cran-withr_2.5.0-1_all.deb ...
645s Unpacking r-cran-withr (2.5.0-1) ...
645s Selecting previously unselected package r-cran-tidyselect.
645s Preparing to unpack .../203-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ...
645s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ...
645s Selecting previously unselected package r-cran-dplyr.
645s Preparing to unpack .../204-r-cran-dplyr_1.1.4-1_amd64.deb ...
645s Unpacking r-cran-dplyr (1.1.4-1) ...
645s Selecting previously unselected package r-cran-purrr.
645s Preparing to unpack .../205-r-cran-purrr_1.0.2-1_amd64.deb ...
645s Unpacking r-cran-purrr (1.0.2-1) ...
645s Selecting previously unselected package r-cran-stringi.
645s Preparing to unpack .../206-r-cran-stringi_1.8.3-1_amd64.deb ...
645s Unpacking r-cran-stringi (1.8.3-1) ...
645s Selecting previously unselected package r-cran-stringr.
645s Preparing to unpack .../207-r-cran-stringr_1.5.1-1_all.deb ...
645s Unpacking r-cran-stringr (1.5.1-1) ...
645s Selecting previously unselected package r-cran-tidyr.
645s Preparing to unpack .../208-r-cran-tidyr_1.3.1-1_amd64.deb ...
645s Unpacking r-cran-tidyr (1.3.1-1) ...
645s Selecting previously unselected package r-cran-dbplyr.
645s Preparing to unpack .../209-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ...
645s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ...
645s Selecting previously unselected package r-cran-filelock.
645s Preparing to unpack .../210-r-cran-filelock_1.0.3-1_amd64.deb ...
645s Unpacking r-cran-filelock (1.0.3-1) ...
645s Selecting previously unselected package r-bioc-biocfilecache.
645s Preparing to unpack .../211-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ...
645s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ...
645s Selecting previously unselected package r-cran-biocmanager.
645s Preparing to unpack .../212-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ...
645s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ...
645s Selecting previously unselected package r-bioc-biocversion.
645s Preparing to unpack .../213-r-bioc-biocversion_3.18.1-1_all.deb ...
645s Unpacking r-bioc-biocversion (3.18.1-1) ...
645s Selecting previously unselected package r-cran-rappdirs.
645s Preparing to unpack .../214-r-cran-rappdirs_0.3.3-1_amd64.deb ...
645s Unpacking r-cran-rappdirs (0.3.3-1) ...
645s Selecting previously unselected package r-cran-yaml.
645s Preparing to unpack .../215-r-cran-yaml_2.3.8-1_amd64.deb ...
645s Unpacking r-cran-yaml (2.3.8-1) ...
645s Selecting previously unselected package r-cran-pkgkitten.
645s Preparing to unpack .../216-r-cran-pkgkitten_0.2.3-1_all.deb ...
645s Unpacking r-cran-pkgkitten (0.2.3-1) ...
645s Selecting previously unselected package r-cran-rcpp.
645s Preparing to unpack .../217-r-cran-rcpp_1.0.12-1_amd64.deb ...
645s Unpacking r-cran-rcpp (1.0.12-1) ...
645s Selecting previously unselected package r-cran-later.
645s Preparing to unpack .../218-r-cran-later_1.3.2+dfsg-1_amd64.deb ...
645s Unpacking r-cran-later (1.3.2+dfsg-1) ...
645s Selecting previously unselected package r-cran-promises.
646s Preparing to unpack .../219-r-cran-promises_1.2.1+dfsg-1_amd64.deb ...
646s Unpacking r-cran-promises (1.2.1+dfsg-1) ...
646s Selecting previously unselected package r-cran-httpuv.
646s Preparing to unpack .../220-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ...
646s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ...
646s Selecting previously unselected package r-cran-base64enc.
646s Preparing to unpack .../221-r-cran-base64enc_0.1-3-3_amd64.deb ...
646s Unpacking r-cran-base64enc (0.1-3-3) ...
646s Selecting previously unselected package r-cran-digest.
646s Preparing to unpack .../222-r-cran-digest_0.6.34-1_amd64.deb ...
646s Unpacking r-cran-digest (0.6.34-1) ...
646s Selecting previously unselected package r-cran-ellipsis.
646s Preparing to unpack .../223-r-cran-ellipsis_0.3.2-2_amd64.deb ...
646s Unpacking r-cran-ellipsis (0.3.2-2) ...
646s Selecting previously unselected package r-cran-htmltools.
646s Preparing to unpack .../224-r-cran-htmltools_0.5.7-1_amd64.deb ...
646s Unpacking r-cran-htmltools (0.5.7-1) ...
646s Selecting previously unselected package r-cran-fontawesome.
646s Preparing to unpack .../225-r-cran-fontawesome_0.5.2-1_all.deb ...
646s Unpacking r-cran-fontawesome (0.5.2-1) ...
646s Selecting previously unselected package r-cran-sourcetools.
646s Preparing to unpack .../226-r-cran-sourcetools_0.1.7-1-1_amd64.deb ...
646s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
646s Selecting previously unselected package r-cran-commonmark.
646s Preparing to unpack .../227-r-cran-commonmark_1.9.1-1_amd64.deb ...
646s Unpacking r-cran-commonmark (1.9.1-1) ...
646s Selecting previously unselected package r-cran-jquerylib.
646s Preparing to unpack .../228-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
646s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
646s Selecting previously unselected package r-cran-fs.
646s Preparing to unpack .../229-r-cran-fs_1.6.3+dfsg-1_amd64.deb ...
646s Unpacking r-cran-fs (1.6.3+dfsg-1) ...
646s Selecting previously unselected package r-cran-sass.
646s Preparing to unpack .../230-r-cran-sass_0.4.8+dfsg-1_amd64.deb ...
646s Unpacking r-cran-sass (0.4.8+dfsg-1) ...
646s Selecting previously unselected package r-cran-bslib.
646s Preparing to unpack .../231-r-cran-bslib_0.6.1+dfsg-1_all.deb ...
646s Unpacking r-cran-bslib (0.6.1+dfsg-1) ...
646s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
646s Preparing to unpack .../232-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
646s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
646s Selecting previously unselected package r-cran-shiny.
646s Preparing to unpack .../233-r-cran-shiny_1.8.0+dfsg-1_all.deb ...
646s Unpacking r-cran-shiny (1.8.0+dfsg-1) ...
646s Selecting previously unselected package r-cran-evaluate.
646s Preparing to unpack .../234-r-cran-evaluate_0.23-1_all.deb ...
646s Unpacking r-cran-evaluate (0.23-1) ...
646s Selecting previously unselected package r-cran-xfun.
646s Preparing to unpack .../235-r-cran-xfun_0.41+dfsg-1_amd64.deb ...
646s Unpacking r-cran-xfun (0.41+dfsg-1) ...
646s Selecting previously unselected package r-cran-highr.
646s Preparing to unpack .../236-r-cran-highr_0.10+dfsg-1_all.deb ...
646s Unpacking r-cran-highr (0.10+dfsg-1) ...
646s Selecting previously unselected package libjs-mathjax.
646s Preparing to unpack .../237-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
646s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
647s Selecting previously unselected package r-cran-knitr.
647s Preparing to unpack .../238-r-cran-knitr_1.45+dfsg-1_all.deb ...
647s Unpacking r-cran-knitr (1.45+dfsg-1) ...
647s Selecting previously unselected package r-cran-tinytex.
647s Preparing to unpack .../239-r-cran-tinytex_0.49-1_all.deb ...
647s Unpacking r-cran-tinytex (0.49-1) ...
647s Selecting previously unselected package libjs-modernizr.
647s Preparing to unpack .../240-libjs-modernizr_2.6.2+ds1-5_all.deb ...
647s Unpacking libjs-modernizr (2.6.2+ds1-5) ...
647s Selecting previously unselected package r-cran-rmarkdown.
647s Preparing to unpack .../241-r-cran-rmarkdown_2.25+dfsg-3_all.deb ...
647s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ...
647s Selecting previously unselected package r-cran-htmlwidgets.
647s Preparing to unpack .../242-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ...
647s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ...
648s Selecting previously unselected package r-cran-crosstalk.
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648s Selecting previously unselected package r-cran-dt.
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648s Selecting previously unselected package r-bioc-interactivedisplaybase.
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648s Selecting previously unselected package r-bioc-annotationhub.
648s Preparing to unpack .../246-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ...
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648s Selecting previously unselected package r-bioc-biocio.
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648s Selecting previously unselected package r-cran-formatr.
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648s Selecting previously unselected package r-cran-lambda.r.
648s Preparing to unpack .../249-r-cran-lambda.r_1.2.4-2build1_all.deb ...
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648s Selecting previously unselected package r-cran-futile.options.
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648s Selecting previously unselected package r-cran-futile.logger.
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648s Selecting previously unselected package r-cran-snow.
648s Preparing to unpack .../252-r-cran-snow_1%3a0.4.4-2_all.deb ...
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648s Selecting previously unselected package r-cran-codetools.
648s Preparing to unpack .../253-r-cran-codetools_0.2-19-1_all.deb ...
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648s Selecting previously unselected package r-cran-bh.
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648s Selecting previously unselected package r-bioc-biocparallel.
648s Preparing to unpack .../255-r-bioc-biocparallel_1.36.0-1_amd64.deb ...
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648s Selecting previously unselected package r-cran-bookdown.
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648s Selecting previously unselected package tex-common.
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654s Selecting previously unselected package r-bioc-biocstyle.
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654s Selecting previously unselected package r-cran-hms.
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654s Selecting previously unselected package r-cran-prettyunits.
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654s Selecting previously unselected package r-cran-progress.
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654s Selecting previously unselected package r-cran-xml2.
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654s Selecting previously unselected package r-bioc-biomart.
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654s Selecting previously unselected package r-cran-lattice.
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654s Selecting previously unselected package r-cran-matrix.
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654s Selecting previously unselected package r-bioc-matrixgenerics.
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654s Selecting previously unselected package r-cran-abind.
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654s Selecting previously unselected package r-bioc-s4arrays.
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654s Selecting previously unselected package r-bioc-sparsearray.
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654s Selecting previously unselected package r-bioc-delayedarray.
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655s Selecting previously unselected package r-bioc-summarizedexperiment.
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655s Selecting previously unselected package r-cran-locfit.
655s Preparing to unpack .../278-r-cran-locfit_1.5-9.8-1_amd64.deb ...
655s Unpacking r-cran-locfit (1.5-9.8-1) ...
655s Selecting previously unselected package r-cran-gtable.
655s Preparing to unpack .../279-r-cran-gtable_0.3.4+dfsg-1_all.deb ...
655s Unpacking r-cran-gtable (0.3.4+dfsg-1) ...
655s Selecting previously unselected package r-cran-isoband.
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655s Selecting previously unselected package r-cran-mass.
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655s Unpacking r-cran-mass (7.3-60.0.1-1) ...
655s Selecting previously unselected package r-cran-nlme.
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655s Selecting previously unselected package r-cran-mgcv.
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655s Selecting previously unselected package r-cran-farver.
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655s Selecting previously unselected package r-cran-labeling.
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655s Selecting previously unselected package r-cran-colorspace.
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655s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ...
655s Selecting previously unselected package r-cran-munsell.
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655s Selecting previously unselected package r-cran-rcolorbrewer.
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655s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
655s Selecting previously unselected package r-cran-viridislite.
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655s Selecting previously unselected package r-cran-scales.
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655s Selecting previously unselected package r-cran-ggplot2.
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655s Selecting previously unselected package r-cran-rcpparmadillo.
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656s Selecting previously unselected package r-bioc-deseq2.
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656s Selecting previously unselected package r-cran-hwriter.
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656s Selecting previously unselected package r-bioc-rhtslib.
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656s Selecting previously unselected package r-bioc-rsamtools.
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656s Selecting previously unselected package r-cran-statmod.
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656s Selecting previously unselected package r-bioc-geneplotter.
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656s Selecting previously unselected package r-cran-survival.
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656s Selecting previously unselected package r-bioc-genefilter.
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656s Selecting previously unselected package r-bioc-dexseq.
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656s Selecting previously unselected package r-bioc-limma.
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656s Selecting previously unselected package r-bioc-edger.
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657s Selecting previously unselected package r-bioc-ensembldb.
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657s Selecting previously unselected package r-cran-locfdr.
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658s Setting up libjs-json (0~20221030+~1.0.8-1) ...
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661s Setting up libxmu6:amd64 (2:1.1.3-3) ...
661s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
661s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
661s Setting up libpng-dev:amd64 (1.6.43-1) ...
661s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
661s Setting up libxaw7:amd64 (2:1.0.14-1) ...
661s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
661s Setting up gcc (4:13.2.0-7ubuntu1) ...
661s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
661s Setting up r-base-core (4.3.2-1build1) ...
661s 
661s Creating config file /etc/R/Renviron with new version
661s Setting up r-cran-crayon (1.5.2-1) ...
661s Setting up r-cran-locfdr (1.1-8-2) ...
661s Setting up r-cran-labeling (0.4.3-1) ...
661s Setting up r-cran-sourcetools (0.1.7-1-1) ...
661s Setting up r-cran-futile.options (1.0.1-3build1) ...
661s Setting up r-cran-lattice (0.22-5-1) ...
661s Setting up r-cran-ps (1.7.6-1) ...
661s Setting up r-cran-nlme (3.1.164-1) ...
661s Setting up r-cran-farver (2.1.1-1) ...
661s Setting up r-cran-formatr (1.14-1) ...
661s Setting up r-cran-pbapply (1.7-2-1) ...
661s Setting up r-cran-xml (3.99-0.16.1-1) ...
661s Setting up r-cran-viridislite (0.4.2-2) ...
661s Setting up r-cran-locfit (1.5-9.8-1) ...
661s Setting up texlive-binaries (2023.20230311.66589-9) ...
661s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
661s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
661s Setting up r-cran-statmod (1.5.0-1) ...
661s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
661s Setting up r-cran-lazyeval (0.2.2-1build1) ...
661s Setting up r-cran-commonmark (1.9.1-1) ...
661s Setting up r-cran-r6 (2.5.1-1) ...
661s Setting up r-cran-pkgkitten (0.2.3-1) ...
661s Setting up texlive-base (2023.20240207-1) ...
662s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
662s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
662s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
663s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
663s Setting up r-cran-magrittr (2.0.3-1) ...
663s Setting up r-cran-rappdirs (0.3.3-1) ...
663s Setting up r-cran-filelock (1.0.3-1) ...
663s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
663s Setting up r-cran-littler (0.3.19-1) ...
663s Setting up r-cran-bh (1.84.0-1) ...
663s Setting up r-cran-fs (1.6.3+dfsg-1) ...
663s Setting up r-cran-rcpp (1.0.12-1) ...
663s Setting up r-cran-curl (5.2.0+dfsg-1) ...
663s Setting up r-cran-codetools (0.2-19-1) ...
663s Setting up g++-13 (13.2.0-17ubuntu2) ...
663s Setting up r-cran-brio (1.1.4-1) ...
663s Setting up r-cran-boot (1.3-30-1) ...
663s Setting up r-cran-diffobj (0.3.5-1) ...
663s Setting up r-bioc-biocgenerics (0.48.1-2) ...
663s Setting up r-cran-rlang (1.1.3-1) ...
663s Setting up r-cran-matrixstats (1.2.0-1) ...
663s Setting up littler (0.3.19-1) ...
663s Setting up r-bioc-matrixgenerics (1.14.0-1) ...
663s Setting up r-cran-xfun (0.41+dfsg-1) ...
663s Setting up r-cran-sys (3.4.2-1) ...
663s Setting up r-cran-plogr (0.2.0-3build1) ...
663s Setting up r-cran-withr (2.5.0-1) ...
663s Setting up r-cran-processx (3.8.3-1) ...
663s Setting up r-cran-mime (0.12-1) ...
663s Setting up r-cran-praise (1.0.0-4build1) ...
663s Setting up r-cran-generics (0.1.3-1) ...
663s Setting up r-cran-base64enc (0.1-3-3) ...
663s Setting up r-cran-abind (1.4-5-2) ...
663s Setting up r-cran-digest (0.6.34-1) ...
663s Setting up r-cran-yaml (2.3.8-1) ...
663s Setting up r-cran-lambda.r (1.2.4-2build1) ...
663s Setting up r-bioc-protgenerics (1.34.0-1) ...
663s Setting up r-cran-evaluate (0.23-1) ...
663s Setting up r-cran-dbi (1.2.2-1) ...
663s Setting up r-cran-highr (0.10+dfsg-1) ...
663s Setting up r-cran-prettyunits (1.2.0-1) ...
663s Setting up r-cran-fansi (1.0.5-1) ...
663s Setting up r-cran-mass (7.3-60.0.1-1) ...
663s Setting up r-cran-snow (1:0.4.4-2) ...
663s Setting up r-cran-glue (1.7.0-1) ...
663s Setting up r-cran-bit (4.0.5-1) ...
663s Setting up r-cran-xtable (1:1.8-4-2) ...
663s Setting up r-cran-cli (3.6.2-1) ...
663s Setting up gfortran (4:13.2.0-7ubuntu1) ...
663s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
663s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
663s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
663s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
663s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
663s Setting up r-cran-bitops (1.0-7-1) ...
663s Setting up r-bioc-biocversion (3.18.1-1) ...
663s Setting up r-cran-rprojroot (2.0.4-1) ...
663s Setting up r-cran-bit64 (4.0.5-1) ...
663s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ...
663s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
663s Setting up r-cran-askpass (1.2.0-1) ...
663s Setting up r-cran-fastmap (1.1.1-1) ...
663s Setting up r-cran-png (0.1-8-1) ...
663s Setting up r-bioc-biobase (2.62.0-1) ...
663s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
663s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
663s Setting up r-cran-utf8 (1.2.4-1) ...
663s Setting up r-cran-colorspace (2.1-0+dfsg-1) ...
663s Setting up r-cran-stringi (1.8.3-1) ...
663s Setting up texlive-latex-base (2023.20240207-1) ...
663s Setting up r-cran-rex (1.2.1-1) ...
663s Setting up r-cran-hwriter (1.3.2.1-1) ...
663s Setting up r-cran-cpp11 (0.4.7-1) ...
663s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
663s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
663s Setting up r-cran-isoband (0.2.7-1) ...
663s Setting up r-cran-futile.logger (1.4.3-4build1) ...
663s Setting up r-bioc-limma (3.58.1+dfsg-1) ...
663s Setting up r-cran-gtable (0.3.4+dfsg-1) ...
663s Setting up r-cran-later (1.3.2+dfsg-1) ...
663s Setting up r-cran-matrix (1.6-5-1) ...
663s Setting up r-cran-tinytex (0.49-1) ...
663s Setting up r-cran-knitr (1.45+dfsg-1) ...
663s Setting up r-cran-mgcv (1.9-1-1) ...
663s Setting up g++ (4:13.2.0-7ubuntu1) ...
663s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
663s Setting up r-cran-cachem (1.0.8-1) ...
663s Setting up build-essential (12.10ubuntu1) ...
663s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ...
663s Setting up r-bioc-iranges (2.36.0-1) ...
663s Setting up r-cran-rjson (0.2.21-1) ...
663s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ...
663s Setting up r-cran-restfulr (0.0.15-1) ...
663s Setting up r-cran-vctrs (0.6.5-1) ...
663s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
663s Setting up r-cran-ellipsis (0.3.2-2) ...
663s Setting up r-cran-openssl (2.1.1+dfsg-2) ...
663s Setting up r-base-dev (4.3.2-1build1) ...
663s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ...
663s Setting up r-cran-stringr (1.5.1-1) ...
663s Setting up r-bioc-biocparallel (1.36.0-1) ...
663s Setting up r-cran-callr (3.7.3-2) ...
663s Setting up r-bioc-edger (4.0.16+dfsg-1) ...
663s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ...
663s Setting up r-cran-desc (1.4.3-1) ...
663s Setting up r-cran-xml2 (1.3.6-1) ...
663s Setting up r-cran-munsell (0.5.0-2build1) ...
663s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
663s Setting up r-cran-survival (3.5-8-1) ...
663s Setting up r-bioc-biocio (1.12.0+dfsg-1) ...
663s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ...
663s Setting up texlive-bibtex-extra (2023.20240207-1) ...
663s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
663s Setting up r-cran-httr (1.4.7+dfsg-1) ...
663s Setting up r-cran-hms (1.1.3-1) ...
663s Setting up r-cran-scales (1.3.0-1) ...
663s Setting up r-cran-memoise (2.0.1-1) ...
663s Setting up r-cran-covr (3.6.4+dfsg-1) ...
663s Setting up r-cran-promises (1.2.1+dfsg-1) ...
663s Setting up r-cran-purrr (1.0.2-1) ...
663s Setting up r-cran-blob (1.2.4-1) ...
663s Setting up r-cran-htmltools (0.5.7-1) ...
663s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
663s Setting up r-bioc-xvector (0.42.0-1) ...
663s Setting up r-cran-pkgbuild (1.4.3-1) ...
663s Setting up r-cran-sass (0.4.8+dfsg-1) ...
663s Setting up r-cran-dplyr (1.1.4-1) ...
663s Setting up r-cran-rsqlite (2.3.4-1) ...
663s Setting up r-cran-progress (1.2.3-1) ...
663s Setting up r-cran-pkgload (1.3.4-1) ...
663s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ...
663s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ...
663s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ...
663s Setting up r-cran-httpuv (1.6.14+dfsg-1) ...
663s Setting up r-cran-rematch2 (2.1.2-2build1) ...
663s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ...
663s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ...
663s Setting up r-cran-fontawesome (0.5.2-1) ...
663s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
663s Setting up r-cran-bslib (0.6.1+dfsg-1) ...
663s Setting up r-cran-waldo (0.5.2-1build1) ...
663s Setting up r-cran-tidyr (1.3.1-1) ...
663s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ...
663s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ...
663s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ...
663s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
663s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ...
663s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ...
663s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ...
663s Setting up r-bioc-annotationdbi (1.64.1-1) ...
663s Setting up r-cran-shiny (1.8.0+dfsg-1) ...
663s Setting up r-cran-testthat (3.2.1-1) ...
663s Setting up r-bioc-annotate (1.80.0+dfsg-1) ...
663s Setting up r-cran-rmarkdown (2.25+dfsg-3) ...
663s Setting up r-bioc-biomart (2.58.2+dfsg-1) ...
663s Setting up r-bioc-saturn (1.10.0+dfsg-1) ...
663s Setting up r-bioc-genefilter (1.84.0-1) ...
663s Setting up r-bioc-genomicalignments (1.38.2-1) ...
663s Setting up r-bioc-geneplotter (1.80.0+dfsg-1) ...
663s Setting up r-cran-bookdown (0.37+dfsg-1) ...
663s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ...
663s Setting up r-bioc-rtracklayer (1.62.0-1) ...
663s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ...
663s Setting up r-bioc-dexseq (1.48.0+dfsg-1) ...
663s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ...
663s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ...
663s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ...
663s Setting up r-cran-dt (0.31+dfsg-1) ...
663s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ...
663s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ...
663s Processing triggers for libc-bin (2.39-0ubuntu2) ...
663s Processing triggers for man-db (2.12.0-3) ...
665s Processing triggers for install-info (7.1-3) ...
665s Processing triggers for tex-common (6.18) ...
665s Running updmap-sys. This may take some time... done.
665s Running mktexlsr /var/lib/texmf ... done.
665s Building format(s) --all.
695s 	This may take some time... done.
699s Reading package lists...
699s Building dependency tree...
699s Reading state information...
699s Starting pkgProblemResolver with broken count: 0
699s Starting 2 pkgProblemResolver with broken count: 0
699s Done
700s The following NEW packages will be installed:
700s   autopkgtest-satdep
700s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
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700s Get:1 /tmp/autopkgtest.1ILdF6/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B]
700s Selecting previously unselected package autopkgtest-satdep.
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700s Setting up autopkgtest-satdep (0) ...
702s (Reading database ... 126166 files and directories currently installed.)
702s Removing autopkgtest-satdep (0) ...
702s autopkgtest [04:17:41]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
702s autopkgtest [04:17:41]: test pkg-r-autopkgtest: [-----------------------
702s Test: Try to load the R library satuRn
702s 
702s R version 4.3.2 (2023-10-31) -- "Eye Holes"
702s Copyright (C) 2023 The R Foundation for Statistical Computing
702s Platform: x86_64-pc-linux-gnu (64-bit)
702s 
702s R is free software and comes with ABSOLUTELY NO WARRANTY.
702s You are welcome to redistribute it under certain conditions.
702s Type 'license()' or 'licence()' for distribution details.
702s 
702s R is a collaborative project with many contributors.
702s Type 'contributors()' for more information and
702s 'citation()' on how to cite R or R packages in publications.
702s 
702s Type 'demo()' for some demos, 'help()' for on-line help, or
702s 'help.start()' for an HTML browser interface to help.
702s Type 'q()' to quit R.
702s 
702s > library('satuRn')
709s > 
709s > 
709s Other tests are currently unsupported!
709s They will be progressively added.
709s autopkgtest [04:17:48]: test pkg-r-autopkgtest: -----------------------]
710s pkg-r-autopkgtest    PASS
710s autopkgtest [04:17:49]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
710s autopkgtest [04:17:49]: @@@@@@@@@@@@@@@@@@@@ summary
710s pkg-r-autopkgtest    PASS
721s Creating nova instance adt-noble-i386-r-bioc-saturn-20240322-040559-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...