0s autopkgtest [04:04:21]: starting date and time: 2024-03-22 04:04:21+0000 0s autopkgtest [04:04:21]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [04:04:21]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.22if6q4p/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-rgsepd --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-53.secgroup --name adt-noble-i386-r-bioc-rgsepd-20240322-040421-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 364s autopkgtest [04:10:25]: testbed dpkg architecture: amd64 364s autopkgtest [04:10:25]: testbed apt version: 2.7.12 364s autopkgtest [04:10:25]: test architecture: i386 364s autopkgtest [04:10:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 365s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 365s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 365s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 365s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3757 kB] 365s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 365s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [696 kB] 365s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [460 kB] 365s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 365s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 365s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 365s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 365s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1277 kB] 365s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4267 kB] 365s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 365s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 365s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 365s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 368s Fetched 11.3 MB in 1s (8130 kB/s) 368s Reading package lists... 370s Reading package lists... 370s Building dependency tree... 370s Reading state information... 370s Calculating upgrade... 371s The following packages will be upgraded: 371s cloud-init fonts-ubuntu-console python3-markupsafe 371s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 371s Need to get 629 kB of archives. 371s After this operation, 11.3 kB disk space will be freed. 371s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 371s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 371s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 371s Preconfiguring packages ... 371s Fetched 629 kB in 0s (19.5 MB/s) 371s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 371s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 371s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 371s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 372s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 372s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 372s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 372s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 372s Setting up cloud-init (24.1.2-0ubuntu1) ... 373s Setting up python3-markupsafe (2.1.5-1build1) ... 373s Processing triggers for man-db (2.12.0-3) ... 374s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 374s Reading package lists... 375s Building dependency tree... 375s Reading state information... 375s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 375s sh: Attempting to set up Debian/Ubuntu apt sources automatically 375s sh: Distribution appears to be Ubuntu 376s Reading package lists... 377s Building dependency tree... 377s Reading state information... 377s eatmydata is already the newest version (131-1). 377s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 377s Reading package lists... 377s Building dependency tree... 377s Reading state information... 377s dbus is already the newest version (1.14.10-4ubuntu1). 377s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 377s Reading package lists... 378s Building dependency tree... 378s Reading state information... 378s rng-tools-debian is already the newest version (2.4). 378s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 378s Reading package lists... 378s Building dependency tree... 378s Reading state information... 378s The following packages will be REMOVED: 378s cloud-init* python3-configobj* python3-debconf* 379s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 379s After this operation, 3256 kB disk space will be freed. 379s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 379s Removing cloud-init (24.1.2-0ubuntu1) ... 379s Removing python3-configobj (5.0.8-3) ... 379s Removing python3-debconf (1.5.86) ... 379s Processing triggers for man-db (2.12.0-3) ... 380s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 380s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 380s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 380s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 380s invoke-rc.d: policy-rc.d denied execution of try-restart. 381s Reading package lists... 381s Building dependency tree... 381s Reading state information... 381s linux-generic is already the newest version (6.8.0-11.11+1). 381s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 381s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 381s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 381s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 383s Reading package lists... 383s Reading package lists... 384s Building dependency tree... 384s Reading state information... 384s Calculating upgrade... 384s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 384s Reading package lists... 384s Building dependency tree... 384s Reading state information... 385s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 385s autopkgtest [04:10:46]: rebooting testbed after setup commands that affected boot 538s autopkgtest [04:13:19]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 538s autopkgtest [04:13:19]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rgsepd 539s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rgsepd 1.34.0-1 (dsc) [2197 B] 539s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rgsepd 1.34.0-1 (tar) [1253 kB] 539s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rgsepd 1.34.0-1 (diff) [2280 B] 540s gpgv: Signature made Fri Dec 8 15:10:10 2023 UTC 540s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 540s gpgv: issuer "tille@debian.org" 540s gpgv: Can't check signature: No public key 540s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rgsepd_1.34.0-1.dsc: no acceptable signature found 540s autopkgtest [04:13:21]: testing package r-bioc-rgsepd version 1.34.0-1 541s autopkgtest [04:13:22]: build not needed 546s autopkgtest [04:13:27]: test pkg-r-autopkgtest: preparing testbed 549s Note, using file '/tmp/autopkgtest.DB51mH/1-autopkgtest-satdep.dsc' to get the build dependencies 549s Reading package lists... 550s Building dependency tree... 550s Reading state information... 550s Starting pkgProblemResolver with broken count: 0 550s Starting 2 pkgProblemResolver with broken count: 0 550s Done 550s The following NEW packages will be installed: 550s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 550s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 550s fonts-glyphicons-halflings fonts-mathjax g++ g++-13 g++-13-x86-64-linux-gnu 550s g++-x86-64-linux-gnu gcc gcc-13 gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu 550s gfortran gfortran-13 gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu 550s icu-devtools libasan8 libatomic1 libblas-dev libblas3 libboost-dev 550s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 550s libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 550s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 550s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 550s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 550s libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax 550s liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 550s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 550s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 550s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 550s libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 550s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 550s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 550s linux-libc-dev littler node-html5shiv node-normalize.css pkg-config 550s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 550s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 550s r-bioc-biocio r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings 550s r-bioc-delayedarray r-bioc-deseq2 r-bioc-genelendatabase r-bioc-genomeinfodb 550s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 550s r-bioc-genomicranges r-bioc-go.db r-bioc-goseq r-bioc-iranges 550s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rgsepd 550s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 550s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 550s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-bh 550s r-cran-biasedurn r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 550s r-cran-boot r-cran-cachem r-cran-catools r-cran-cli r-cran-codetools 550s r-cran-colorspace r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 550s r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi 550s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-formatr 550s r-cran-futile.logger r-cran-futile.options r-cran-gdata r-cran-generics 550s r-cran-ggplot2 r-cran-glue r-cran-gplots r-cran-gtable r-cran-gtools 550s r-cran-highr r-cran-hms r-cran-httr r-cran-isoband r-cran-jsonlite 550s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r 550s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr 550s r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv 550s r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar 550s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 550s r-cran-progress r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer 550s r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-restfulr r-cran-rjson 550s r-cran-rlang r-cran-rsqlite r-cran-scales r-cran-snow r-cran-stringi 550s r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 550s r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun 550s r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip 550s x11-common xdg-utils zip zlib1g-dev 550s 0 upgraded, 244 newly installed, 0 to remove and 0 not upgraded. 550s Need to get 469 MB of archives. 550s After this operation, 1446 MB of additional disk space will be used. 550s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 550s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 550s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 550s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 550s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 550s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 550s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 550s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 550s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 550s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 551s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 551s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 551s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 551s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 551s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 551s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 551s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 551s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 551s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 551s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 551s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 551s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 551s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 551s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 551s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 551s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 551s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 551s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 551s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 551s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 551s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 551s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 551s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 551s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 551s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 551s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 551s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 551s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 551s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 551s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 551s Get:41 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 551s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 551s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 551s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 551s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 551s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 551s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 551s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 551s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 551s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 551s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 551s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 551s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 551s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 551s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 551s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 551s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 551s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 551s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 551s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 551s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 551s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 551s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 551s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 551s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 551s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 551s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 551s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 551s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 551s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 551s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 551s Get:72 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 551s Get:73 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 551s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 551s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 551s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 551s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 551s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 551s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 551s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 551s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 551s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 551s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 551s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 551s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 551s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 551s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 551s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 551s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 551s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 551s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 551s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 551s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 551s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 551s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 551s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 551s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 551s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 551s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 551s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 551s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 551s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 551s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 551s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 551s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 551s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 551s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 551s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 552s Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 552s Get:110 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 552s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 552s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 552s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 552s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 552s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 552s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 552s Get:117 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 552s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 552s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 552s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 552s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 552s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 552s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 552s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 552s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 552s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 552s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 552s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 552s Get:129 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 552s Get:130 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 552s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 552s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 552s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 552s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 552s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 552s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 552s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 552s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 552s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 552s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 552s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 552s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 552s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 552s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 552s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 552s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 552s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 552s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 552s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 552s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 552s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 552s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 552s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 552s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 552s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 552s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 552s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 552s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 552s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 552s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 552s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 552s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 552s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 552s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 552s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 553s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 553s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 553s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 553s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 553s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 553s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 553s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 553s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 553s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 553s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 553s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 553s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 553s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 553s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 553s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 553s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 553s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 553s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 553s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 553s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 553s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 553s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 553s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 553s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 553s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 553s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 553s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 553s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 553s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 553s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 553s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 553s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 553s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 553s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 553s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 554s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-locfit amd64 1.5-9.8-1 [513 kB] 554s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 554s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 554s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 554s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 554s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 554s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 554s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 554s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 554s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 554s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 554s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 554s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 554s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 554s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 554s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 554s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpparmadillo amd64 0.12.8.0.0-1 [862 kB] 554s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-deseq2 amd64 1.42.0+dfsg-1 [1226 kB] 554s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 554s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 554s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 554s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 554s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 554s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 554s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 554s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 555s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genelendatabase all 1.38.0-1 [100 MB] 555s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-go.db all 3.18.0-1 [18.7 MB] 555s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biasedurn amd64 2.0.11-1 [279 kB] 555s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-goseq all 1.54.0-1 [1744 kB] 555s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB] 556s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtools amd64 3.9.5-1 [340 kB] 556s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-catools amd64 1.18.2-1 [201 kB] 556s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-kernsmooth amd64 2.23-22-1 [91.7 kB] 556s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gdata all 3.0.0-1 [483 kB] 556s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gplots all 3.1.3.1-1 [589 kB] 556s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rgsepd all 1.34.0-1 [1364 kB] 556s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-boot all 1.3-30-1 [619 kB] 556s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 556s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 556s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 556s Get:242 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 556s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 556s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 557s Preconfiguring packages ... 557s Fetched 469 MB in 6s (81.5 MB/s) 557s Selecting previously unselected package libc-dev-bin. 557s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 557s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 557s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 557s Selecting previously unselected package linux-libc-dev:amd64. 557s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 557s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 557s Selecting previously unselected package libcrypt-dev:amd64. 557s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 557s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 557s Selecting previously unselected package libtirpc-dev:amd64. 557s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 557s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 557s Selecting previously unselected package libnsl-dev:amd64. 557s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 557s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 557s Selecting previously unselected package rpcsvc-proto. 557s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 557s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 557s Selecting previously unselected package libc6-dev:amd64. 557s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 557s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 557s Selecting previously unselected package libisl23:amd64. 557s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 557s Unpacking libisl23:amd64 (0.26-3) ... 557s Selecting previously unselected package libmpc3:amd64. 557s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 557s Unpacking libmpc3:amd64 (1.3.1-1) ... 557s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 557s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 557s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 558s Selecting previously unselected package cpp-13. 558s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 558s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 558s Selecting previously unselected package cpp-x86-64-linux-gnu. 558s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 558s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 558s Selecting previously unselected package cpp. 558s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 558s Unpacking cpp (4:13.2.0-7ubuntu1) ... 558s Selecting previously unselected package libcc1-0:amd64. 558s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 558s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 558s Selecting previously unselected package libgomp1:amd64. 558s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 558s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 558s Selecting previously unselected package libitm1:amd64. 558s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 558s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 558s Selecting previously unselected package libatomic1:amd64. 558s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 558s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 558s Selecting previously unselected package libasan8:amd64. 558s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 558s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 558s Selecting previously unselected package liblsan0:amd64. 558s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 558s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 558s Selecting previously unselected package libtsan2:amd64. 558s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 558s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 558s Selecting previously unselected package libubsan1:amd64. 558s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 558s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 558s Selecting previously unselected package libhwasan0:amd64. 558s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 558s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 558s Selecting previously unselected package libquadmath0:amd64. 558s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 558s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 558s Selecting previously unselected package libgcc-13-dev:amd64. 558s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 558s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 558s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 558s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 558s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 559s Selecting previously unselected package gcc-13. 559s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 559s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 559s Selecting previously unselected package gcc-x86-64-linux-gnu. 559s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 559s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 559s Selecting previously unselected package gcc. 559s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 559s Unpacking gcc (4:13.2.0-7ubuntu1) ... 559s Selecting previously unselected package libstdc++-13-dev:amd64. 559s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 559s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 559s Selecting previously unselected package g++-13-x86-64-linux-gnu. 559s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 559s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 559s Selecting previously unselected package g++-13. 559s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 559s Unpacking g++-13 (13.2.0-17ubuntu2) ... 559s Selecting previously unselected package g++-x86-64-linux-gnu. 559s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 559s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 559s Selecting previously unselected package g++. 559s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 559s Unpacking g++ (4:13.2.0-7ubuntu1) ... 559s Selecting previously unselected package build-essential. 559s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 559s Unpacking build-essential (12.10ubuntu1) ... 559s Selecting previously unselected package dctrl-tools. 559s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 559s Unpacking dctrl-tools (2.24-3build2) ... 559s Selecting previously unselected package fonts-dejavu-mono. 559s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 559s Unpacking fonts-dejavu-mono (2.37-8) ... 559s Selecting previously unselected package fonts-dejavu-core. 559s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 559s Unpacking fonts-dejavu-core (2.37-8) ... 559s Selecting previously unselected package fontconfig-config. 559s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 559s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 560s Selecting previously unselected package libfontconfig1:amd64. 560s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 560s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 560s Selecting previously unselected package fontconfig. 560s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 560s Unpacking fontconfig (2.15.0-1ubuntu1) ... 560s Selecting previously unselected package fonts-glyphicons-halflings. 560s Preparing to unpack .../040-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 560s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 560s Selecting previously unselected package fonts-mathjax. 560s Preparing to unpack .../041-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 560s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 560s Selecting previously unselected package libgfortran5:amd64. 560s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 560s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 560s Selecting previously unselected package libgfortran-13-dev:amd64. 560s Preparing to unpack .../043-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 560s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 560s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 560s Preparing to unpack .../044-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 560s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 560s Selecting previously unselected package gfortran-13. 560s Preparing to unpack .../045-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 560s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 560s Selecting previously unselected package gfortran-x86-64-linux-gnu. 560s Preparing to unpack .../046-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 560s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 560s Selecting previously unselected package gfortran. 560s Preparing to unpack .../047-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 560s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 560s Selecting previously unselected package icu-devtools. 560s Preparing to unpack .../048-icu-devtools_74.2-1ubuntu1_amd64.deb ... 560s Unpacking icu-devtools (74.2-1ubuntu1) ... 560s Selecting previously unselected package libblas3:amd64. 560s Preparing to unpack .../049-libblas3_3.12.0-3_amd64.deb ... 560s Unpacking libblas3:amd64 (3.12.0-3) ... 560s Selecting previously unselected package libblas-dev:amd64. 560s Preparing to unpack .../050-libblas-dev_3.12.0-3_amd64.deb ... 560s Unpacking libblas-dev:amd64 (3.12.0-3) ... 560s Selecting previously unselected package libboost1.83-dev:amd64. 560s Preparing to unpack .../051-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 560s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 563s Selecting previously unselected package libboost-dev:amd64. 563s Preparing to unpack .../052-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 563s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ... 563s Selecting previously unselected package libbz2-dev:amd64. 563s Preparing to unpack .../053-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 563s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 563s Selecting previously unselected package libpixman-1-0:amd64. 563s Preparing to unpack .../054-libpixman-1-0_0.42.2-1_amd64.deb ... 563s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 563s Selecting previously unselected package libxcb-render0:amd64. 563s Preparing to unpack .../055-libxcb-render0_1.15-1_amd64.deb ... 563s Unpacking libxcb-render0:amd64 (1.15-1) ... 563s Selecting previously unselected package libxcb-shm0:amd64. 563s Preparing to unpack .../056-libxcb-shm0_1.15-1_amd64.deb ... 563s Unpacking libxcb-shm0:amd64 (1.15-1) ... 563s Selecting previously unselected package libxrender1:amd64. 563s Preparing to unpack .../057-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 563s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 563s Selecting previously unselected package libcairo2:amd64. 563s Preparing to unpack .../058-libcairo2_1.18.0-1_amd64.deb ... 563s Unpacking libcairo2:amd64 (1.18.0-1) ... 563s Selecting previously unselected package libdatrie1:amd64. 563s Preparing to unpack .../059-libdatrie1_0.2.13-3_amd64.deb ... 563s Unpacking libdatrie1:amd64 (0.2.13-3) ... 563s Selecting previously unselected package libdeflate0:amd64. 563s Preparing to unpack .../060-libdeflate0_1.19-1_amd64.deb ... 563s Unpacking libdeflate0:amd64 (1.19-1) ... 563s Selecting previously unselected package libgraphite2-3:amd64. 563s Preparing to unpack .../061-libgraphite2-3_1.3.14-2_amd64.deb ... 563s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 563s Selecting previously unselected package libharfbuzz0b:amd64. 563s Preparing to unpack .../062-libharfbuzz0b_8.3.0-2_amd64.deb ... 563s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 563s Selecting previously unselected package x11-common. 563s Preparing to unpack .../063-x11-common_1%3a7.7+23ubuntu2_all.deb ... 563s Unpacking x11-common (1:7.7+23ubuntu2) ... 563s Selecting previously unselected package libice6:amd64. 563s Preparing to unpack .../064-libice6_2%3a1.0.10-1build2_amd64.deb ... 563s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 563s Selecting previously unselected package libicu-dev:amd64. 563s Preparing to unpack .../065-libicu-dev_74.2-1ubuntu1_amd64.deb ... 563s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 563s Selecting previously unselected package libjpeg-turbo8:amd64. 563s Preparing to unpack .../066-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 563s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 563s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 563s Preparing to unpack .../067-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 563s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 564s Selecting previously unselected package libjpeg8:amd64. 564s Preparing to unpack .../068-libjpeg8_8c-2ubuntu11_amd64.deb ... 564s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 564s Selecting previously unselected package libjpeg8-dev:amd64. 564s Preparing to unpack .../069-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 564s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 564s Selecting previously unselected package libjpeg-dev:amd64. 564s Preparing to unpack .../070-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 564s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 564s Selecting previously unselected package libjs-bootstrap. 564s Preparing to unpack .../071-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 564s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 564s Selecting previously unselected package libjs-highlight.js. 564s Preparing to unpack .../072-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 564s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 564s Selecting previously unselected package libjs-jquery. 564s Preparing to unpack .../073-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 564s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 564s Selecting previously unselected package libjs-jquery-datatables. 564s Preparing to unpack .../074-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 564s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 564s Selecting previously unselected package liblapack3:amd64. 564s Preparing to unpack .../075-liblapack3_3.12.0-3_amd64.deb ... 564s Unpacking liblapack3:amd64 (3.12.0-3) ... 564s Selecting previously unselected package liblapack-dev:amd64. 564s Preparing to unpack .../076-liblapack-dev_3.12.0-3_amd64.deb ... 564s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 564s Selecting previously unselected package liblerc4:amd64. 564s Preparing to unpack .../077-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 564s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 564s Selecting previously unselected package libncurses-dev:amd64. 564s Preparing to unpack .../078-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 564s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 564s Selecting previously unselected package libthai-data. 564s Preparing to unpack .../079-libthai-data_0.1.29-2_all.deb ... 564s Unpacking libthai-data (0.1.29-2) ... 564s Selecting previously unselected package libthai0:amd64. 564s Preparing to unpack .../080-libthai0_0.1.29-2_amd64.deb ... 564s Unpacking libthai0:amd64 (0.1.29-2) ... 564s Selecting previously unselected package libpango-1.0-0:amd64. 564s Preparing to unpack .../081-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 564s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 564s Selecting previously unselected package libpangoft2-1.0-0:amd64. 564s Preparing to unpack .../082-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 564s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 564s Selecting previously unselected package libpangocairo-1.0-0:amd64. 564s Preparing to unpack .../083-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 564s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 564s Selecting previously unselected package libpaper1:amd64. 564s Preparing to unpack .../084-libpaper1_1.1.29_amd64.deb ... 564s Unpacking libpaper1:amd64 (1.1.29) ... 564s Selecting previously unselected package libpaper-utils. 564s Preparing to unpack .../085-libpaper-utils_1.1.29_amd64.deb ... 564s Unpacking libpaper-utils (1.1.29) ... 564s Selecting previously unselected package libpcre2-16-0:amd64. 564s Preparing to unpack .../086-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 564s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 564s Selecting previously unselected package libpcre2-32-0:amd64. 564s Preparing to unpack .../087-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 564s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 564s Selecting previously unselected package libpcre2-posix3:amd64. 564s Preparing to unpack .../088-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 564s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 564s Selecting previously unselected package libpcre2-dev:amd64. 564s Preparing to unpack .../089-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 564s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 564s Selecting previously unselected package libpkgconf3:amd64. 564s Preparing to unpack .../090-libpkgconf3_1.8.1-2_amd64.deb ... 564s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 564s Selecting previously unselected package zlib1g-dev:amd64. 564s Preparing to unpack .../091-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 564s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 565s Selecting previously unselected package libpng-dev:amd64. 565s Preparing to unpack .../092-libpng-dev_1.6.43-1_amd64.deb ... 565s Unpacking libpng-dev:amd64 (1.6.43-1) ... 565s Selecting previously unselected package libreadline-dev:amd64. 565s Preparing to unpack .../093-libreadline-dev_8.2-3_amd64.deb ... 565s Unpacking libreadline-dev:amd64 (8.2-3) ... 565s Selecting previously unselected package libsharpyuv0:amd64. 565s Preparing to unpack .../094-libsharpyuv0_1.3.2-0.4_amd64.deb ... 565s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 565s Selecting previously unselected package libsm6:amd64. 565s Preparing to unpack .../095-libsm6_2%3a1.2.3-1build2_amd64.deb ... 565s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 565s Selecting previously unselected package libtcl8.6:amd64. 565s Preparing to unpack .../096-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 565s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 565s Selecting previously unselected package libjbig0:amd64. 565s Preparing to unpack .../097-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 565s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 565s Selecting previously unselected package libwebp7:amd64. 565s Preparing to unpack .../098-libwebp7_1.3.2-0.4_amd64.deb ... 565s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 565s Selecting previously unselected package libtiff6:amd64. 565s Preparing to unpack .../099-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 565s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 565s Selecting previously unselected package libxft2:amd64. 565s Preparing to unpack .../100-libxft2_2.3.6-1_amd64.deb ... 565s Unpacking libxft2:amd64 (2.3.6-1) ... 565s Selecting previously unselected package libxss1:amd64. 565s Preparing to unpack .../101-libxss1_1%3a1.2.3-1build2_amd64.deb ... 565s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 565s Selecting previously unselected package libtk8.6:amd64. 565s Preparing to unpack .../102-libtk8.6_8.6.13-2_amd64.deb ... 565s Unpacking libtk8.6:amd64 (8.6.13-2) ... 565s Selecting previously unselected package libxt6:amd64. 565s Preparing to unpack .../103-libxt6_1%3a1.2.1-1.1_amd64.deb ... 565s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 565s Selecting previously unselected package zip. 565s Preparing to unpack .../104-zip_3.0-13_amd64.deb ... 565s Unpacking zip (3.0-13) ... 565s Selecting previously unselected package unzip. 565s Preparing to unpack .../105-unzip_6.0-28ubuntu3_amd64.deb ... 565s Unpacking unzip (6.0-28ubuntu3) ... 565s Selecting previously unselected package xdg-utils. 565s Preparing to unpack .../106-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 565s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 565s Selecting previously unselected package r-base-core. 565s Preparing to unpack .../107-r-base-core_4.3.2-1build1_amd64.deb ... 565s Unpacking r-base-core (4.3.2-1build1) ... 566s Selecting previously unselected package r-cran-littler. 566s Preparing to unpack .../108-r-cran-littler_0.3.19-1_amd64.deb ... 566s Unpacking r-cran-littler (0.3.19-1) ... 566s Selecting previously unselected package littler. 566s Preparing to unpack .../109-littler_0.3.19-1_all.deb ... 566s Unpacking littler (0.3.19-1) ... 566s Selecting previously unselected package node-html5shiv. 566s Preparing to unpack .../110-node-html5shiv_3.7.3+dfsg-5_all.deb ... 566s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 566s Selecting previously unselected package node-normalize.css. 566s Preparing to unpack .../111-node-normalize.css_8.0.1-5_all.deb ... 566s Unpacking node-normalize.css (8.0.1-5) ... 566s Selecting previously unselected package pkgconf-bin. 566s Preparing to unpack .../112-pkgconf-bin_1.8.1-2_amd64.deb ... 566s Unpacking pkgconf-bin (1.8.1-2) ... 566s Selecting previously unselected package pkgconf:amd64. 566s Preparing to unpack .../113-pkgconf_1.8.1-2_amd64.deb ... 566s Unpacking pkgconf:amd64 (1.8.1-2) ... 566s Selecting previously unselected package pkg-config:amd64. 566s Preparing to unpack .../114-pkg-config_1.8.1-2_amd64.deb ... 566s Unpacking pkg-config:amd64 (1.8.1-2) ... 566s Selecting previously unselected package liblzma-dev:amd64. 566s Preparing to unpack .../115-liblzma-dev_5.4.5-0.3_amd64.deb ... 566s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 566s Selecting previously unselected package r-base-dev. 566s Preparing to unpack .../116-r-base-dev_4.3.2-1build1_all.deb ... 566s Unpacking r-base-dev (4.3.2-1build1) ... 566s Selecting previously unselected package pkg-r-autopkgtest. 566s Preparing to unpack .../117-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 566s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 566s Selecting previously unselected package r-bioc-biocgenerics. 566s Preparing to unpack .../118-r-bioc-biocgenerics_0.48.1-2_all.deb ... 566s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 566s Selecting previously unselected package r-bioc-biobase. 566s Preparing to unpack .../119-r-bioc-biobase_2.62.0-1_amd64.deb ... 566s Unpacking r-bioc-biobase (2.62.0-1) ... 566s Selecting previously unselected package r-bioc-s4vectors. 566s Preparing to unpack .../120-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 566s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 566s Selecting previously unselected package r-bioc-iranges. 566s Preparing to unpack .../121-r-bioc-iranges_2.36.0-1_amd64.deb ... 566s Unpacking r-bioc-iranges (2.36.0-1) ... 566s Selecting previously unselected package r-cran-dbi. 566s Preparing to unpack .../122-r-cran-dbi_1.2.2-1_all.deb ... 566s Unpacking r-cran-dbi (1.2.2-1) ... 566s Selecting previously unselected package r-cran-bit. 566s Preparing to unpack .../123-r-cran-bit_4.0.5-1_amd64.deb ... 566s Unpacking r-cran-bit (4.0.5-1) ... 566s Selecting previously unselected package r-cran-bit64. 566s Preparing to unpack .../124-r-cran-bit64_4.0.5-1_amd64.deb ... 566s Unpacking r-cran-bit64 (4.0.5-1) ... 566s Selecting previously unselected package r-cran-rlang. 566s Preparing to unpack .../125-r-cran-rlang_1.1.3-1_amd64.deb ... 566s Unpacking r-cran-rlang (1.1.3-1) ... 566s Selecting previously unselected package r-cran-cli. 566s Preparing to unpack .../126-r-cran-cli_3.6.2-1_amd64.deb ... 566s Unpacking r-cran-cli (3.6.2-1) ... 566s Selecting previously unselected package r-cran-glue. 566s Preparing to unpack .../127-r-cran-glue_1.7.0-1_amd64.deb ... 566s Unpacking r-cran-glue (1.7.0-1) ... 566s Selecting previously unselected package r-cran-lifecycle. 566s Preparing to unpack .../128-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 566s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 566s Selecting previously unselected package r-cran-vctrs. 566s Preparing to unpack .../129-r-cran-vctrs_0.6.5-1_amd64.deb ... 566s Unpacking r-cran-vctrs (0.6.5-1) ... 566s Selecting previously unselected package r-cran-blob. 566s Preparing to unpack .../130-r-cran-blob_1.2.4-1_all.deb ... 566s Unpacking r-cran-blob (1.2.4-1) ... 566s Selecting previously unselected package r-cran-fastmap. 566s Preparing to unpack .../131-r-cran-fastmap_1.1.1-1_amd64.deb ... 566s Unpacking r-cran-fastmap (1.1.1-1) ... 566s Selecting previously unselected package r-cran-cachem. 566s Preparing to unpack .../132-r-cran-cachem_1.0.8-1_amd64.deb ... 566s Unpacking r-cran-cachem (1.0.8-1) ... 566s Selecting previously unselected package r-cran-memoise. 567s Preparing to unpack .../133-r-cran-memoise_2.0.1-1_all.deb ... 567s Unpacking r-cran-memoise (2.0.1-1) ... 567s Selecting previously unselected package r-cran-pkgconfig. 567s Preparing to unpack .../134-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 567s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 567s Selecting previously unselected package r-cran-plogr. 567s Preparing to unpack .../135-r-cran-plogr_0.2.0-3build1_all.deb ... 567s Unpacking r-cran-plogr (0.2.0-3build1) ... 567s Selecting previously unselected package r-cran-cpp11. 567s Preparing to unpack .../136-r-cran-cpp11_0.4.7-1_all.deb ... 567s Unpacking r-cran-cpp11 (0.4.7-1) ... 567s Selecting previously unselected package r-cran-rsqlite. 567s Preparing to unpack .../137-r-cran-rsqlite_2.3.4-1_amd64.deb ... 567s Unpacking r-cran-rsqlite (2.3.4-1) ... 567s Selecting previously unselected package r-cran-curl. 567s Preparing to unpack .../138-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 567s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 567s Selecting previously unselected package r-cran-jsonlite. 567s Preparing to unpack .../139-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 567s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 567s Selecting previously unselected package r-cran-mime. 567s Preparing to unpack .../140-r-cran-mime_0.12-1_amd64.deb ... 567s Unpacking r-cran-mime (0.12-1) ... 567s Selecting previously unselected package r-cran-sys. 567s Preparing to unpack .../141-r-cran-sys_3.4.2-1_amd64.deb ... 567s Unpacking r-cran-sys (3.4.2-1) ... 567s Selecting previously unselected package r-cran-askpass. 567s Preparing to unpack .../142-r-cran-askpass_1.2.0-1_amd64.deb ... 567s Unpacking r-cran-askpass (1.2.0-1) ... 567s Selecting previously unselected package r-cran-openssl. 567s Preparing to unpack .../143-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 567s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 567s Selecting previously unselected package r-cran-r6. 567s Preparing to unpack .../144-r-cran-r6_2.5.1-1_all.deb ... 567s Unpacking r-cran-r6 (2.5.1-1) ... 567s Selecting previously unselected package r-cran-httr. 567s Preparing to unpack .../145-r-cran-httr_1.4.7+dfsg-1_all.deb ... 567s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 567s Selecting previously unselected package r-cran-png. 567s Preparing to unpack .../146-r-cran-png_0.1-8-1_amd64.deb ... 567s Unpacking r-cran-png (0.1-8-1) ... 567s Selecting previously unselected package r-bioc-zlibbioc. 567s Preparing to unpack .../147-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 567s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 567s Selecting previously unselected package r-bioc-xvector. 567s Preparing to unpack .../148-r-bioc-xvector_0.42.0-1_amd64.deb ... 567s Unpacking r-bioc-xvector (0.42.0-1) ... 567s Selecting previously unselected package r-cran-bitops. 567s Preparing to unpack .../149-r-cran-bitops_1.0-7-1_amd64.deb ... 567s Unpacking r-cran-bitops (1.0-7-1) ... 567s Selecting previously unselected package r-cran-rcurl. 567s Preparing to unpack .../150-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 567s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 567s Selecting previously unselected package r-bioc-genomeinfodbdata. 567s Preparing to unpack .../151-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 567s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 567s Selecting previously unselected package r-bioc-genomeinfodb. 567s Preparing to unpack .../152-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 567s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 567s Selecting previously unselected package r-cran-crayon. 567s Preparing to unpack .../153-r-cran-crayon_1.5.2-1_all.deb ... 567s Unpacking r-cran-crayon (1.5.2-1) ... 567s Selecting previously unselected package r-bioc-biostrings. 567s Preparing to unpack .../154-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 567s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 568s Selecting previously unselected package r-bioc-keggrest. 568s Preparing to unpack .../155-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 568s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 568s Selecting previously unselected package r-bioc-annotationdbi. 568s Preparing to unpack .../156-r-bioc-annotationdbi_1.64.1-1_all.deb ... 568s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 568s Selecting previously unselected package r-cran-generics. 568s Preparing to unpack .../157-r-cran-generics_0.1.3-1_all.deb ... 568s Unpacking r-cran-generics (0.1.3-1) ... 568s Selecting previously unselected package r-cran-magrittr. 568s Preparing to unpack .../158-r-cran-magrittr_2.0.3-1_amd64.deb ... 568s Unpacking r-cran-magrittr (2.0.3-1) ... 568s Selecting previously unselected package r-cran-fansi. 568s Preparing to unpack .../159-r-cran-fansi_1.0.5-1_amd64.deb ... 568s Unpacking r-cran-fansi (1.0.5-1) ... 568s Selecting previously unselected package r-cran-utf8. 568s Preparing to unpack .../160-r-cran-utf8_1.2.4-1_amd64.deb ... 568s Unpacking r-cran-utf8 (1.2.4-1) ... 568s Selecting previously unselected package r-cran-pillar. 568s Preparing to unpack .../161-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 568s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 568s Selecting previously unselected package r-cran-tibble. 568s Preparing to unpack .../162-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 568s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 568s Selecting previously unselected package r-cran-withr. 568s Preparing to unpack .../163-r-cran-withr_2.5.0-1_all.deb ... 568s Unpacking r-cran-withr (2.5.0-1) ... 568s Selecting previously unselected package r-cran-tidyselect. 568s Preparing to unpack .../164-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 568s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 568s Selecting previously unselected package r-cran-dplyr. 568s Preparing to unpack .../165-r-cran-dplyr_1.1.4-1_amd64.deb ... 568s Unpacking r-cran-dplyr (1.1.4-1) ... 568s Selecting previously unselected package r-cran-purrr. 568s Preparing to unpack .../166-r-cran-purrr_1.0.2-1_amd64.deb ... 568s Unpacking r-cran-purrr (1.0.2-1) ... 568s Selecting previously unselected package r-cran-stringi. 568s Preparing to unpack .../167-r-cran-stringi_1.8.3-1_amd64.deb ... 568s Unpacking r-cran-stringi (1.8.3-1) ... 568s Selecting previously unselected package r-cran-stringr. 568s Preparing to unpack .../168-r-cran-stringr_1.5.1-1_all.deb ... 568s Unpacking r-cran-stringr (1.5.1-1) ... 568s Selecting previously unselected package r-cran-tidyr. 568s Preparing to unpack .../169-r-cran-tidyr_1.3.1-1_amd64.deb ... 568s Unpacking r-cran-tidyr (1.3.1-1) ... 568s Selecting previously unselected package r-cran-dbplyr. 568s Preparing to unpack .../170-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 568s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 568s Selecting previously unselected package r-cran-filelock. 568s Preparing to unpack .../171-r-cran-filelock_1.0.3-1_amd64.deb ... 568s Unpacking r-cran-filelock (1.0.3-1) ... 568s Selecting previously unselected package r-bioc-biocfilecache. 568s Preparing to unpack .../172-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 568s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 568s Selecting previously unselected package r-bioc-biocio. 568s Preparing to unpack .../173-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 568s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 568s Selecting previously unselected package r-cran-formatr. 568s Preparing to unpack .../174-r-cran-formatr_1.14-1_all.deb ... 568s Unpacking r-cran-formatr (1.14-1) ... 568s Selecting previously unselected package r-cran-lambda.r. 569s Preparing to unpack .../175-r-cran-lambda.r_1.2.4-2build1_all.deb ... 569s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 569s Selecting previously unselected package r-cran-futile.options. 569s Preparing to unpack .../176-r-cran-futile.options_1.0.1-3build1_all.deb ... 569s Unpacking r-cran-futile.options (1.0.1-3build1) ... 569s Selecting previously unselected package r-cran-futile.logger. 569s Preparing to unpack .../177-r-cran-futile.logger_1.4.3-4build1_all.deb ... 569s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 569s Selecting previously unselected package r-cran-snow. 569s Preparing to unpack .../178-r-cran-snow_1%3a0.4.4-2_all.deb ... 569s Unpacking r-cran-snow (1:0.4.4-2) ... 569s Selecting previously unselected package r-cran-codetools. 569s Preparing to unpack .../179-r-cran-codetools_0.2-19-1_all.deb ... 569s Unpacking r-cran-codetools (0.2-19-1) ... 569s Selecting previously unselected package r-cran-bh. 569s Preparing to unpack .../180-r-cran-bh_1.84.0-1_all.deb ... 569s Unpacking r-cran-bh (1.84.0-1) ... 569s Selecting previously unselected package r-bioc-biocparallel. 569s Preparing to unpack .../181-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 569s Unpacking r-bioc-biocparallel (1.36.0-1) ... 569s Selecting previously unselected package r-cran-xml. 569s Preparing to unpack .../182-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 569s Unpacking r-cran-xml (3.99-0.16.1-1) ... 569s Selecting previously unselected package r-cran-hms. 569s Preparing to unpack .../183-r-cran-hms_1.1.3-1_all.deb ... 569s Unpacking r-cran-hms (1.1.3-1) ... 569s Selecting previously unselected package r-cran-prettyunits. 569s Preparing to unpack .../184-r-cran-prettyunits_1.2.0-1_all.deb ... 569s Unpacking r-cran-prettyunits (1.2.0-1) ... 569s Selecting previously unselected package r-cran-progress. 569s Preparing to unpack .../185-r-cran-progress_1.2.3-1_all.deb ... 569s Unpacking r-cran-progress (1.2.3-1) ... 569s Selecting previously unselected package r-cran-digest. 569s Preparing to unpack .../186-r-cran-digest_0.6.34-1_amd64.deb ... 569s Unpacking r-cran-digest (0.6.34-1) ... 569s Selecting previously unselected package r-cran-rappdirs. 569s Preparing to unpack .../187-r-cran-rappdirs_0.3.3-1_amd64.deb ... 569s Unpacking r-cran-rappdirs (0.3.3-1) ... 569s Selecting previously unselected package r-cran-xml2. 569s Preparing to unpack .../188-r-cran-xml2_1.3.6-1_amd64.deb ... 569s Unpacking r-cran-xml2 (1.3.6-1) ... 569s Selecting previously unselected package r-bioc-biomart. 569s Preparing to unpack .../189-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 569s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 569s Selecting previously unselected package r-cran-lattice. 569s Preparing to unpack .../190-r-cran-lattice_0.22-5-1_amd64.deb ... 569s Unpacking r-cran-lattice (0.22-5-1) ... 569s Selecting previously unselected package r-cran-matrix. 569s Preparing to unpack .../191-r-cran-matrix_1.6-5-1_amd64.deb ... 569s Unpacking r-cran-matrix (1.6-5-1) ... 569s Selecting previously unselected package r-cran-matrixstats. 569s Preparing to unpack .../192-r-cran-matrixstats_1.2.0-1_amd64.deb ... 569s Unpacking r-cran-matrixstats (1.2.0-1) ... 569s Selecting previously unselected package r-bioc-matrixgenerics. 569s Preparing to unpack .../193-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 569s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 569s Selecting previously unselected package r-cran-abind. 569s Preparing to unpack .../194-r-cran-abind_1.4-5-2_all.deb ... 569s Unpacking r-cran-abind (1.4-5-2) ... 569s Selecting previously unselected package r-bioc-s4arrays. 569s Preparing to unpack .../195-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 569s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 569s Selecting previously unselected package r-bioc-sparsearray. 569s Preparing to unpack .../196-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 569s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 569s Selecting previously unselected package r-bioc-delayedarray. 569s Preparing to unpack .../197-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 569s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 569s Selecting previously unselected package r-bioc-genomicranges. 569s Preparing to unpack .../198-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 569s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 570s Selecting previously unselected package r-bioc-summarizedexperiment. 570s Preparing to unpack .../199-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 570s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 570s Selecting previously unselected package r-cran-locfit. 570s Preparing to unpack .../200-r-cran-locfit_1.5-9.8-1_amd64.deb ... 570s Unpacking r-cran-locfit (1.5-9.8-1) ... 570s Selecting previously unselected package r-cran-gtable. 570s Preparing to unpack .../201-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 570s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 570s Selecting previously unselected package r-cran-isoband. 570s Preparing to unpack .../202-r-cran-isoband_0.2.7-1_amd64.deb ... 570s Unpacking r-cran-isoband (0.2.7-1) ... 570s Selecting previously unselected package r-cran-mass. 570s Preparing to unpack .../203-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 570s Unpacking r-cran-mass (7.3-60.0.1-1) ... 570s Selecting previously unselected package r-cran-nlme. 570s Preparing to unpack .../204-r-cran-nlme_3.1.164-1_amd64.deb ... 570s Unpacking r-cran-nlme (3.1.164-1) ... 570s Selecting previously unselected package r-cran-mgcv. 570s Preparing to unpack .../205-r-cran-mgcv_1.9-1-1_amd64.deb ... 570s Unpacking r-cran-mgcv (1.9-1-1) ... 570s Selecting previously unselected package r-cran-farver. 570s Preparing to unpack .../206-r-cran-farver_2.1.1-1_amd64.deb ... 570s Unpacking r-cran-farver (2.1.1-1) ... 570s Selecting previously unselected package r-cran-labeling. 570s Preparing to unpack .../207-r-cran-labeling_0.4.3-1_all.deb ... 570s Unpacking r-cran-labeling (0.4.3-1) ... 570s Selecting previously unselected package r-cran-colorspace. 570s Preparing to unpack .../208-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 570s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 570s Selecting previously unselected package r-cran-munsell. 570s Preparing to unpack .../209-r-cran-munsell_0.5.0-2build1_all.deb ... 570s Unpacking r-cran-munsell (0.5.0-2build1) ... 570s Selecting previously unselected package r-cran-rcolorbrewer. 570s Preparing to unpack .../210-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 570s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 570s Selecting previously unselected package r-cran-viridislite. 570s Preparing to unpack .../211-r-cran-viridislite_0.4.2-2_all.deb ... 570s Unpacking r-cran-viridislite (0.4.2-2) ... 570s Selecting previously unselected package r-cran-scales. 570s Preparing to unpack .../212-r-cran-scales_1.3.0-1_all.deb ... 570s Unpacking r-cran-scales (1.3.0-1) ... 570s Selecting previously unselected package r-cran-ggplot2. 570s Preparing to unpack .../213-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 570s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 570s Selecting previously unselected package r-cran-pkgkitten. 570s Preparing to unpack .../214-r-cran-pkgkitten_0.2.3-1_all.deb ... 570s Unpacking r-cran-pkgkitten (0.2.3-1) ... 570s Selecting previously unselected package r-cran-rcpp. 570s Preparing to unpack .../215-r-cran-rcpp_1.0.12-1_amd64.deb ... 570s Unpacking r-cran-rcpp (1.0.12-1) ... 571s Selecting previously unselected package r-cran-rcpparmadillo. 571s Preparing to unpack .../216-r-cran-rcpparmadillo_0.12.8.0.0-1_amd64.deb ... 571s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 571s Selecting previously unselected package r-bioc-deseq2. 571s Preparing to unpack .../217-r-bioc-deseq2_1.42.0+dfsg-1_amd64.deb ... 571s Unpacking r-bioc-deseq2 (1.42.0+dfsg-1) ... 571s Selecting previously unselected package r-bioc-rhtslib. 571s Preparing to unpack .../218-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 571s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 571s Selecting previously unselected package r-bioc-rsamtools. 571s Preparing to unpack .../219-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 571s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 571s Selecting previously unselected package r-bioc-genomicalignments. 571s Preparing to unpack .../220-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 571s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 571s Selecting previously unselected package r-cran-rjson. 571s Preparing to unpack .../221-r-cran-rjson_0.2.21-1_amd64.deb ... 571s Unpacking r-cran-rjson (0.2.21-1) ... 571s Selecting previously unselected package r-cran-yaml. 571s Preparing to unpack .../222-r-cran-yaml_2.3.8-1_amd64.deb ... 571s Unpacking r-cran-yaml (2.3.8-1) ... 571s Selecting previously unselected package r-cran-restfulr. 571s Preparing to unpack .../223-r-cran-restfulr_0.0.15-1_amd64.deb ... 571s Unpacking r-cran-restfulr (0.0.15-1) ... 571s Selecting previously unselected package r-bioc-rtracklayer. 571s Preparing to unpack .../224-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 571s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 571s Selecting previously unselected package r-bioc-genomicfeatures. 571s Preparing to unpack .../225-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 571s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 571s Selecting previously unselected package r-bioc-genelendatabase. 571s Preparing to unpack .../226-r-bioc-genelendatabase_1.38.0-1_all.deb ... 571s Unpacking r-bioc-genelendatabase (1.38.0-1) ... 572s Selecting previously unselected package r-bioc-go.db. 572s Preparing to unpack .../227-r-bioc-go.db_3.18.0-1_all.deb ... 572s Unpacking r-bioc-go.db (3.18.0-1) ... 572s Selecting previously unselected package r-cran-biasedurn. 572s Preparing to 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Setting up liblapack-dev:amd64 (3.12.0-3) ... 576s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 576s Setting up pkg-config:amd64 (1.8.1-2) ... 576s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 576s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 576s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ... 576s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 576s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 576s Setting up libsm6:amd64 (2:1.2.3-1build2) ... 576s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ... 576s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 576s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 576s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 576s Setting up fontconfig (2.15.0-1ubuntu1) ... 578s Regenerating fonts cache... done. 578s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 578s Setting up libxft2:amd64 (2.3.6-1) ... 578s Setting up libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 578s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 578s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ... 578s Setting up cpp-13 (13.2.0-17ubuntu2) ... 578s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 578s Setting up libtk8.6:amd64 (8.6.13-2) ... 578s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... 578s Setting up libreadline-dev:amd64 (8.2-3) ... 578s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 578s Setting up libcairo2:amd64 (1.18.0-1) ... 578s Setting up gcc-13 (13.2.0-17ubuntu2) ... 578s Setting up libxt6:amd64 (1:1.2.1-1.1) ... 578s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 578s Setting up cpp (4:13.2.0-7ubuntu1) ... 578s Setting up libboost-dev:amd64 (1.83.0.1ubuntu2) ... 578s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 578s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 578s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 578s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 578s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 578s Setting up libpng-dev:amd64 (1.6.43-1) ... 578s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 578s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 578s Setting up gcc (4:13.2.0-7ubuntu1) ... 578s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 578s Setting up r-base-core (4.3.2-1build1) ... 578s 578s Creating config file /etc/R/Renviron with new version 578s Setting up r-cran-crayon (1.5.2-1) ... 578s Setting up r-cran-labeling (0.4.3-1) ... 578s Setting up r-cran-biasedurn (2.0.11-1) ... 578s Setting up r-cran-futile.options (1.0.1-3build1) ... 578s Setting up r-cran-lattice (0.22-5-1) ... 578s Setting up r-cran-nlme (3.1.164-1) ... 578s Setting up r-cran-farver (2.1.1-1) ... 578s Setting up r-cran-formatr (1.14-1) ... 578s Setting up r-cran-xml (3.99-0.16.1-1) ... 578s Setting up r-cran-viridislite (0.4.2-2) ... 578s Setting up r-cran-locfit (1.5-9.8-1) ... 578s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 578s Setting up r-cran-r6 (2.5.1-1) ... 578s Setting up r-cran-pkgkitten (0.2.3-1) ... 578s Setting up r-cran-magrittr (2.0.3-1) ... 578s Setting up r-cran-rappdirs (0.3.3-1) ... 578s Setting up r-cran-filelock (1.0.3-1) ... 578s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 578s Setting up r-cran-littler (0.3.19-1) ... 578s Setting up r-cran-bh (1.84.0-1) ... 578s Setting up r-cran-rcpp (1.0.12-1) ... 578s Setting up r-cran-curl (5.2.0+dfsg-1) ... 578s Setting up r-cran-codetools (0.2-19-1) ... 578s Setting up g++-13 (13.2.0-17ubuntu2) ... 578s Setting up r-cran-boot (1.3-30-1) ... 578s Setting up r-bioc-biocgenerics (0.48.1-2) ... 578s Setting up r-cran-rlang (1.1.3-1) ... 578s Setting up r-cran-matrixstats (1.2.0-1) ... 578s Setting up littler (0.3.19-1) ... 578s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 578s Setting up r-cran-xfun (0.41+dfsg-1) ... 578s Setting up r-cran-sys (3.4.2-1) ... 578s Setting up r-cran-plogr (0.2.0-3build1) ... 578s Setting up r-cran-withr (2.5.0-1) ... 578s Setting up r-cran-mime (0.12-1) ... 578s Setting up r-cran-generics (0.1.3-1) ... 578s Setting up r-cran-abind (1.4-5-2) ... 578s Setting up r-cran-digest (0.6.34-1) ... 578s Setting up r-cran-yaml (2.3.8-1) ... 578s Setting up r-cran-lambda.r (1.2.4-2build1) ... 578s Setting up r-cran-evaluate (0.23-1) ... 578s Setting up r-cran-dbi (1.2.2-1) ... 578s Setting up r-cran-highr (0.10+dfsg-1) ... 578s Setting up r-cran-prettyunits (1.2.0-1) ... 578s Setting up r-cran-fansi (1.0.5-1) ... 578s Setting up r-cran-mass (7.3-60.0.1-1) ... 578s Setting up r-cran-snow (1:0.4.4-2) ... 578s Setting up r-cran-gtools (3.9.5-1) ... 578s Setting up r-cran-glue (1.7.0-1) ... 578s Setting up r-cran-bit (4.0.5-1) ... 578s Setting up r-cran-xtable (1:1.8-4-2) ... 578s Setting up r-cran-cli (3.6.2-1) ... 578s Setting up gfortran (4:13.2.0-7ubuntu1) ... 578s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 578s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 578s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 578s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 578s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 578s Setting up r-cran-bitops (1.0-7-1) ... 578s Setting up r-cran-bit64 (4.0.5-1) ... 578s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 578s Setting up r-cran-askpass (1.2.0-1) ... 578s Setting up r-cran-fastmap (1.1.1-1) ... 578s Setting up r-cran-png (0.1-8-1) ... 578s Setting up r-bioc-biobase (2.62.0-1) ... 578s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 578s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 578s Setting up r-cran-utf8 (1.2.4-1) ... 578s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 578s Setting up r-cran-stringi (1.8.3-1) ... 578s Setting up r-cran-cpp11 (0.4.7-1) ... 578s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 578s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 578s Setting up r-cran-isoband (0.2.7-1) ... 578s Setting up r-cran-futile.logger (1.4.3-4build1) ... 578s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 578s Setting up r-cran-matrix (1.6-5-1) ... 578s Setting up r-cran-kernsmooth (2.23-22-1) ... 578s Setting up r-cran-knitr (1.45+dfsg-1) ... 578s Setting up r-cran-mgcv (1.9-1-1) ... 578s Setting up g++ (4:13.2.0-7ubuntu1) ... 578s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 578s Setting up r-cran-cachem (1.0.8-1) ... 578s Setting up build-essential (12.10ubuntu1) ... 578s Setting up r-cran-catools (1.18.2-1) ... 578s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ... 578s Setting up r-bioc-iranges (2.36.0-1) ... 578s Setting up r-cran-rjson (0.2.21-1) ... 578s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 578s Setting up r-cran-restfulr (0.0.15-1) ... 578s Setting up r-cran-gdata (3.0.0-1) ... 578s Setting up r-cran-vctrs (0.6.5-1) ... 578s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 578s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 578s Setting up r-base-dev (4.3.2-1build1) ... 578s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 578s Setting up r-cran-stringr (1.5.1-1) ... 578s Setting up r-bioc-biocparallel (1.36.0-1) ... 578s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 578s Setting up r-cran-xml2 (1.3.6-1) ... 578s Setting up r-cran-munsell (0.5.0-2build1) ... 578s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 578s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 578s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 578s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 578s Setting up r-cran-httr (1.4.7+dfsg-1) ... 578s Setting up r-cran-hms (1.1.3-1) ... 578s Setting up r-cran-scales (1.3.0-1) ... 578s Setting up r-cran-memoise (2.0.1-1) ... 578s Setting up r-cran-purrr (1.0.2-1) ... 578s Setting up r-cran-blob (1.2.4-1) ... 578s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 578s Setting up r-bioc-xvector (0.42.0-1) ... 578s Setting up r-cran-dplyr (1.1.4-1) ... 578s Setting up r-cran-gplots (3.1.3.1-1) ... 578s Setting up r-cran-rsqlite (2.3.4-1) ... 578s Setting up r-cran-progress (1.2.3-1) ... 578s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 578s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 578s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 578s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 578s Setting up r-cran-tidyr (1.3.1-1) ... 578s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 578s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 578s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 578s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 578s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 578s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 578s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ... 578s Setting up r-bioc-annotationdbi (1.64.1-1) ... 578s Setting up r-bioc-go.db (3.18.0-1) ... 578s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 578s Setting up r-bioc-genomicalignments (1.38.2-1) ... 578s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ... 578s Setting up r-bioc-rtracklayer (1.62.0-1) ... 578s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 578s Setting up r-bioc-genelendatabase (1.38.0-1) ... 578s Setting up r-bioc-goseq (1.54.0-1) ... 578s Setting up r-bioc-rgsepd (1.34.0-1) ... 578s Processing triggers for man-db (2.12.0-3) ... 580s Processing triggers for install-info (7.1-3) ... 580s Processing triggers for libc-bin (2.39-0ubuntu2) ... 585s Reading package lists... 585s Building dependency tree... 585s Reading state information... 585s Starting pkgProblemResolver with broken count: 0 585s Starting 2 pkgProblemResolver with broken count: 0 585s Done 586s The following NEW packages will be installed: 586s autopkgtest-satdep 586s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 586s Need to get 0 B/696 B of archives. 586s After this operation, 0 B of additional disk space will be used. 586s Get:1 /tmp/autopkgtest.DB51mH/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 586s Selecting previously unselected package autopkgtest-satdep. 586s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 110222 files and directories currently installed.) 586s Preparing to unpack .../2-autopkgtest-satdep.deb ... 586s Unpacking autopkgtest-satdep (0) ... 586s Setting up autopkgtest-satdep (0) ... 588s (Reading database ... 110222 files and directories currently installed.) 588s Removing autopkgtest-satdep (0) ... 588s autopkgtest [04:14:09]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 588s autopkgtest [04:14:09]: test pkg-r-autopkgtest: [----------------------- 588s Test: Try to load the R library rgsepd 588s 588s R version 4.3.2 (2023-10-31) -- "Eye Holes" 588s Copyright (C) 2023 The R Foundation for Statistical Computing 588s Platform: x86_64-pc-linux-gnu (64-bit) 588s 588s R is free software and comes with ABSOLUTELY NO WARRANTY. 588s You are welcome to redistribute it under certain conditions. 588s Type 'license()' or 'licence()' for distribution details. 588s 588s R is a collaborative project with many contributors. 588s Type 'contributors()' for more information and 588s 'citation()' on how to cite R or R packages in publications. 588s 588s Type 'demo()' for some demos, 'help()' for on-line help, or 588s 'help.start()' for an HTML browser interface to help. 588s Type 'q()' to quit R. 588s 588s > library('rgsepd') 588s Loading required package: DESeq2 588s Loading required package: S4Vectors 588s Loading required package: stats4 588s Loading required package: BiocGenerics 588s 588s Attaching package: ‘BiocGenerics’ 588s 588s The following objects are masked from ‘package:stats’: 588s 588s IQR, mad, sd, var, xtabs 588s 588s The following objects are masked from ‘package:base’: 588s 588s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 588s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 588s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 588s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 588s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 588s table, tapply, union, unique, unsplit, which.max, which.min 588s 589s 589s Attaching package: ‘S4Vectors’ 589s 589s The following object is masked from ‘package:utils’: 589s 589s findMatches 589s 589s The following objects are masked from ‘package:base’: 589s 589s expand.grid, I, unname 589s 589s Loading required package: IRanges 589s Loading required package: GenomicRanges 589s Loading required package: GenomeInfoDb 590s Loading required package: SummarizedExperiment 590s Loading required package: MatrixGenerics 590s Loading required package: matrixStats 590s 590s Attaching package: ‘MatrixGenerics’ 590s 590s The following objects are masked from ‘package:matrixStats’: 590s 590s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 590s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 590s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 590s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 590s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 590s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 590s colWeightedMeans, colWeightedMedians, colWeightedSds, 590s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 590s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 590s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 590s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 590s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 590s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 590s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 590s rowWeightedSds, rowWeightedVars 590s 590s Loading required package: Biobase 591s Welcome to Bioconductor 591s 591s Vignettes contain introductory material; view with 591s 'browseVignettes()'. To cite Bioconductor, see 591s 'citation("Biobase")', and for packages 'citation("pkgname")'. 591s 591s 591s Attaching package: ‘Biobase’ 591s 591s The following object is masked from ‘package:MatrixGenerics’: 591s 591s rowMedians 591s 591s The following objects are masked from ‘package:matrixStats’: 591s 591s anyMissing, rowMedians 591s 594s Loading required package: goseq 594s Loading required package: BiasedUrn 594s Loading required package: geneLenDataBase 598s 598s Attaching package: ‘geneLenDataBase’ 598s 598s The following object is masked from ‘package:S4Vectors’: 598s 598s unfactor 598s 598s 599s 599s Loading R/GSEPD 1.34.0 599s Building human gene name caches 602s 'select()' returned 1:1 mapping between keys and columns 604s 'select()' returned 1:1 mapping between keys and columns 607s > 607s > 607s Other tests are currently unsupported! 607s They will be progressively added. 607s autopkgtest [04:14:28]: test pkg-r-autopkgtest: -----------------------] 607s autopkgtest [04:14:28]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 607s pkg-r-autopkgtest PASS 607s autopkgtest [04:14:28]: @@@@@@@@@@@@@@@@@@@@ summary 607s pkg-r-autopkgtest PASS 617s Creating nova instance adt-noble-i386-r-bioc-rgsepd-20240322-040421-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...