0s autopkgtest [22:30:27]: starting date and time: 2024-03-19 22:30:27+0000
  0s autopkgtest [22:30:27]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [22:30:27]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.in772jx5/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-rcurl --apt-upgrade r-bioc-rcpi --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-rcurl/1.98-1.14+dfsg-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-36.secgroup --name adt-noble-i386-r-bioc-rcpi-20240319-223027-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
334s autopkgtest [22:36:01]: testbed dpkg architecture: amd64
334s autopkgtest [22:36:01]: testbed apt version: 2.7.12
334s autopkgtest [22:36:01]: test architecture: i386
334s autopkgtest [22:36:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup
334s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
334s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
334s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3797 kB]
334s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [492 kB]
334s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [52.7 kB]
334s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [683 kB]
334s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [440 kB]
334s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B]
334s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B]
334s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [36.6 kB]
334s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B]
334s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4219 kB]
334s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1272 kB]
334s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B]
334s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [67.2 kB]
334s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [16.2 kB]
334s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B]
338s Fetched 11.2 MB in 1s (7969 kB/s)
338s Reading package lists...
339s Reading package lists...
340s Building dependency tree...
340s Reading state information...
340s Calculating upgrade...
340s The following packages will be upgraded:
340s   ubuntu-minimal ubuntu-standard
340s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
340s Need to get 21.5 kB of archives.
340s After this operation, 0 B of additional disk space will be used.
340s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 ubuntu-minimal amd64 1.536build1 [10.7 kB]
340s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 ubuntu-standard amd64 1.536build1 [10.7 kB]
341s Fetched 21.5 kB in 0s (667 kB/s)
341s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71803 files and directories currently installed.)
341s Preparing to unpack .../ubuntu-minimal_1.536build1_amd64.deb ...
341s Unpacking ubuntu-minimal (1.536build1) over (1.536) ...
341s Preparing to unpack .../ubuntu-standard_1.536build1_amd64.deb ...
341s Unpacking ubuntu-standard (1.536build1) over (1.536) ...
341s Setting up ubuntu-minimal (1.536build1) ...
341s Setting up ubuntu-standard (1.536build1) ...
341s Reading package lists...
341s Building dependency tree...
341s Reading state information...
342s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
342s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
342s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
342s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
342s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
343s Reading package lists...
343s Reading package lists...
344s Building dependency tree...
344s Reading state information...
344s Calculating upgrade...
344s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
344s Reading package lists...
345s Building dependency tree...
345s Reading state information...
345s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
346s autopkgtest [22:36:13]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024
346s autopkgtest [22:36:13]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rcpi
347s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rcpi 1.38.0+ds-1 (dsc) [2199 B]
347s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rcpi 1.38.0+ds-1 (tar) [1493 kB]
347s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rcpi 1.38.0+ds-1 (diff) [6328 B]
347s gpgv: Signature made Thu Nov 30 17:08:09 2023 UTC
347s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
347s gpgv:                issuer "tille@debian.org"
347s gpgv: Can't check signature: No public key
347s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rcpi_1.38.0+ds-1.dsc: no acceptable signature found
347s autopkgtest [22:36:14]: testing package r-bioc-rcpi version 1.38.0+ds-1
348s autopkgtest [22:36:15]: build not needed
350s autopkgtest [22:36:17]: test pkg-r-autopkgtest: preparing testbed
355s Note, using file '/tmp/autopkgtest.ZIYqoR/1-autopkgtest-satdep.dsc' to get the build dependencies
355s Reading package lists...
355s Building dependency tree...
355s Reading state information...
355s Starting pkgProblemResolver with broken count: 1
355s Starting 2 pkgProblemResolver with broken count: 1
355s Investigating (0) curl:amd64 < 8.5.0-2ubuntu2 @ii K Ib >
355s Broken curl:amd64 Depends on libcurl4:amd64 < 8.5.0-2ubuntu2 @ii pR > (= 8.5.0-2ubuntu2)
355s   Considering libcurl4:amd64 0 as a solution to curl:amd64 1
355s   Added libcurl4:amd64 to the remove list
355s Investigating (1) curl:amd64 < 8.5.0-2ubuntu2 @ii K Ib >
355s Broken curl:amd64 Depends on libcurl4:amd64 < 8.5.0-2ubuntu2 @ii pR > (= 8.5.0-2ubuntu2)
355s   Considering libcurl4:amd64 1 as a solution to curl:amd64 1
355s   Removing curl:amd64 rather than change libcurl4:amd64
355s Investigating (1) pollinate:amd64 < 4.33-3.1ubuntu1 @ii K Ib >
355s Broken pollinate:amd64 Depends on curl:amd64 < 8.5.0-2ubuntu2 @ii R >
355s   Considering curl:amd64 1 as a solution to pollinate:amd64 0
355s   Removing pollinate:amd64 rather than change curl:amd64
355s Done
356s The following packages will be REMOVED:
356s   curl libcurl4 libpsl5 libssl3 pollinate
356s The following NEW packages will be installed:
356s   build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu
356s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
356s   fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13
356s   g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13
356s   gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13
356s   gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools
356s   javascript-common libasan8 libatomic1 libblas-dev libblas3 libbz2-dev
356s   libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64
356s   libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev
356s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
356s   libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
356s   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4
356s   libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
356s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
356s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
356s   libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker
356s   liblapack-dev liblapack3 liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3
356s   libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0
356s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0
356s   libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpsl5t64
356s   libquadmath0 libreadline-dev libsharpyuv0 libsm6 libssl3t64 libstdc++-13-dev
356s   libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2
356s   libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1
356s   libxt6 linux-libc-dev littler node-bootstrap-sass node-html5shiv
356s   node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf
356s   pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase
356s   r-bioc-biocgenerics r-bioc-biostrings r-bioc-genomeinfodb
356s   r-bioc-genomeinfodbdata r-bioc-go.db r-bioc-gosemsim r-bioc-iranges
356s   r-bioc-keggrest r-bioc-rcpi r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc
356s   r-cran-askpass r-cran-base64enc r-cran-bit r-cran-bit64 r-cran-bitops
356s   r-cran-blob r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli
356s   r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl
356s   r-cran-dbi r-cran-desc r-cran-diffobj r-cran-digest r-cran-doparallel
356s   r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap
356s   r-cran-fontawesome r-cran-foreach r-cran-fs r-cran-glue r-cran-highr
356s   r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-iterators r-cran-jquerylib
356s   r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lifecycle r-cran-littler
356s   r-cran-magrittr r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar
356s   r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload
356s   r-cran-plogr r-cran-png r-cran-praise r-cran-processx r-cran-promises
356s   r-cran-ps r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-rematch2
356s   r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite
356s   r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-stringi r-cran-stringr
356s   r-cran-sys r-cran-testthat r-cran-tibble r-cran-tinytex r-cran-utf8
356s   r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml
356s   r-cran-yulab.utils rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev
356s 0 upgraded, 233 newly installed, 5 to remove and 0 not upgraded.
356s Need to get 280 MB of archives.
356s After this operation, 940 MB of additional disk space will be used.
356s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpsl5t64 amd64 0.21.2-1.1 [57.0 kB]
356s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libssl3t64 amd64 3.0.13-0ubuntu2 [1936 kB]
356s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB]
356s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB]
356s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB]
356s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB]
356s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB]
356s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB]
356s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB]
356s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB]
356s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB]
356s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB]
356s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B]
356s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
356s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
356s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB]
356s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB]
356s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB]
356s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB]
356s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB]
356s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB]
356s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB]
356s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB]
356s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB]
356s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB]
356s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB]
356s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB]
356s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB]
356s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
356s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
356s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB]
356s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB]
356s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB]
356s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
356s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
356s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
356s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB]
356s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
356s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
356s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB]
356s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB]
356s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB]
356s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
356s Get:44 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
356s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
356s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB]
356s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB]
356s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB]
357s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB]
357s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B]
357s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B]
357s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB]
357s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B]
357s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB]
357s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB]
357s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB]
357s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB]
357s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB]
357s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B]
357s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB]
357s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB]
357s Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcurl4t64 amd64 8.5.0-2ubuntu7 [340 kB]
357s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB]
357s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB]
357s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB]
357s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB]
357s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
357s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB]
357s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB]
357s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB]
357s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB]
357s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
357s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
357s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
357s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
357s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
357s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
357s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB]
357s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
357s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
357s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
357s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
357s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
357s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
357s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
357s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
357s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
357s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
357s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB]
357s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB]
357s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB]
357s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB]
357s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB]
357s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB]
357s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB]
357s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB]
357s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB]
357s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB]
357s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB]
357s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B]
357s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB]
357s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB]
357s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B]
357s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB]
357s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB]
357s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB]
357s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB]
357s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB]
357s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB]
357s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB]
357s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB]
357s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB]
357s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB]
357s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB]
357s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB]
357s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B]
357s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB]
357s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB]
357s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB]
357s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB]
357s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
357s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB]
357s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB]
357s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B]
357s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
357s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
357s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB]
357s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB]
357s Get:129 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB]
357s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB]
357s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB]
357s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B]
357s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB]
357s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B]
357s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
357s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
357s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB]
357s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB]
357s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB]
357s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB]
357s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB]
357s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB]
357s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB]
357s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB]
357s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB]
357s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
357s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
357s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB]
357s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB]
357s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB]
357s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB]
357s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
357s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB]
357s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB]
357s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB]
357s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB]
357s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB]
357s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB]
357s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB]
357s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB]
357s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB]
357s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB]
357s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
357s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB]
357s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
357s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB]
357s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB]
357s Get:168 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1build1 [793 kB]
357s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
357s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
357s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB]
357s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB]
358s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB]
358s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB]
358s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-go.db all 3.18.0-1 [18.7 MB]
358s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB]
358s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB]
358s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yulab.utils all 0.1.4-1 [79.3 kB]
358s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
358s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB]
358s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-gosemsim amd64 2.28.1-1 [897 kB]
358s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB]
358s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-iterators all 1.0.14-1 [336 kB]
358s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-foreach all 1.5.2-1 [124 kB]
358s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-doparallel all 1.0.17-1 [189 kB]
358s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB]
358s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rcpi all 1.38.0+ds-1 [1143 kB]
358s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB]
358s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB]
358s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB]
358s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB]
358s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
358s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB]
358s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB]
358s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB]
358s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB]
358s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB]
358s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB]
358s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB]
358s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB]
358s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB]
358s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB]
358s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB]
358s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB]
358s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB]
358s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB]
358s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB]
358s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
358s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB]
358s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB]
358s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB]
358s Get:212 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
358s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB]
358s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
358s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
358s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB]
358s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB]
358s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB]
358s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB]
358s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
358s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB]
358s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB]
358s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB]
358s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB]
358s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB]
358s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB]
358s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB]
358s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
358s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
358s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB]
358s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB]
358s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB]
358s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB]
359s Preconfiguring packages ...
359s Fetched 280 MB in 2s (133 MB/s)
359s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71803 files and directories currently installed.)
359s Removing pollinate (4.33-3.1ubuntu1) ...
359s Removing curl (8.5.0-2ubuntu2) ...
359s Removing libcurl4:amd64 (8.5.0-2ubuntu2) ...
359s dpkg: libpsl5:amd64: dependency problems, but removing anyway as you requested:
359s  wget depends on libpsl5 (>= 0.16.0).
359s  libcurl3-gnutls:amd64 depends on libpsl5 (>= 0.16.0).
359s 
359s Removing libpsl5:amd64 (0.21.2-1build1) ...
359s Selecting previously unselected package libpsl5t64:amd64.
359s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71777 files and directories currently installed.)
359s Preparing to unpack .../libpsl5t64_0.21.2-1.1_amd64.deb ...
359s Unpacking libpsl5t64:amd64 (0.21.2-1.1) ...
359s dpkg: libssl3:amd64: dependency problems, but removing anyway as you requested:
359s  wget depends on libssl3 (>= 3.0.0).
359s  tnftp depends on libssl3 (>= 3.0.0).
359s  tcpdump depends on libssl3 (>= 3.0.0).
359s  systemd-resolved depends on libssl3 (>= 3.0.0).
359s  systemd depends on libssl3 (>= 3.0.0).
359s  sudo depends on libssl3 (>= 3.0.0).
359s  sbsigntool depends on libssl3 (>= 3.0.0).
359s  rsync depends on libssl3 (>= 3.0.0).
359s  python3-cryptography depends on libssl3 (>= 3.0.0).
359s  openssl depends on libssl3 (>= 3.0.9).
359s  openssh-server depends on libssl3 (>= 3.0.10).
359s  openssh-client depends on libssl3 (>= 3.0.10).
359s  mokutil depends on libssl3 (>= 3.0.0).
359s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
359s  libtss2-esys-3.0.2-0:amd64 depends on libssl3 (>= 3.0.0).
359s  libsystemd-shared:amd64 depends on libssl3 (>= 3.0.0).
359s  libssh-4:amd64 depends on libssl3 (>= 3.0.0).
359s  libsasl2-modules:amd64 depends on libssl3 (>= 3.0.0).
359s  libsasl2-2:amd64 depends on libssl3 (>= 3.0.0).
359s  libpython3.12-minimal:amd64 depends on libssl3 (>= 3.0.0).
359s  libpython3.11-minimal:amd64 depends on libssl3 (>= 3.0.0).
359s  libnvme1 depends on libssl3 (>= 3.0.0).
359s  libkrb5-3:amd64 depends on libssl3 (>= 3.0.0).
359s  libkmod2:amd64 depends on libssl3 (>= 3.0.0).
359s  libfido2-1:amd64 depends on libssl3 (>= 3.0.0).
359s  libcryptsetup12:amd64 depends on libssl3 (>= 3.0.0).
359s  kmod depends on libssl3 (>= 3.0.0).
359s  dhcpcd-base depends on libssl3 (>= 3.0.0).
359s  coreutils depends on libssl3 (>= 3.0.0).
359s  bind9-libs:amd64 depends on libssl3 (>= 3.0.0).
359s 
359s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71783 files and directories currently installed.)
359s Removing libssl3:amd64 (3.0.10-1ubuntu4) ...
359s Selecting previously unselected package libssl3t64:amd64.
359s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71772 files and directories currently installed.)
359s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_amd64.deb ...
359s Unpacking libssl3t64:amd64 (3.0.13-0ubuntu2) ...
359s Setting up libssl3t64:amd64 (3.0.13-0ubuntu2) ...
359s Selecting previously unselected package libc-dev-bin.
359s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71785 files and directories currently installed.)
359s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ...
359s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
360s Selecting previously unselected package linux-libc-dev:amd64.
360s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ...
360s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ...
360s Selecting previously unselected package libcrypt-dev:amd64.
360s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ...
360s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ...
360s Selecting previously unselected package libtirpc-dev:amd64.
360s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ...
360s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
360s Selecting previously unselected package libnsl-dev:amd64.
360s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ...
360s Unpacking libnsl-dev:amd64 (1.3.0-3) ...
360s Selecting previously unselected package rpcsvc-proto.
360s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ...
360s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
360s Selecting previously unselected package libc6-dev:amd64.
360s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ...
360s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ...
360s Selecting previously unselected package libisl23:amd64.
360s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ...
360s Unpacking libisl23:amd64 (0.26-3) ...
360s Selecting previously unselected package libmpc3:amd64.
360s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ...
360s Unpacking libmpc3:amd64 (1.3.1-1) ...
360s Selecting previously unselected package cpp-13-x86-64-linux-gnu.
360s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
360s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
360s Selecting previously unselected package cpp-13.
360s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ...
360s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
360s Selecting previously unselected package cpp-x86-64-linux-gnu.
360s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
360s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
360s Selecting previously unselected package cpp.
360s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ...
360s Unpacking cpp (4:13.2.0-7ubuntu1) ...
360s Selecting previously unselected package libcc1-0:amd64.
360s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ...
360s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ...
360s Selecting previously unselected package libgomp1:amd64.
360s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ...
360s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ...
360s Selecting previously unselected package libitm1:amd64.
360s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ...
360s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ...
360s Selecting previously unselected package libatomic1:amd64.
360s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ...
360s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ...
360s Selecting previously unselected package libasan8:amd64.
360s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ...
360s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ...
360s Selecting previously unselected package liblsan0:amd64.
360s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ...
360s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ...
361s Selecting previously unselected package libtsan2:amd64.
361s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ...
361s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ...
361s Selecting previously unselected package libubsan1:amd64.
361s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ...
361s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ...
361s Selecting previously unselected package libhwasan0:amd64.
361s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ...
361s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ...
361s Selecting previously unselected package libquadmath0:amd64.
361s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ...
361s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ...
361s Selecting previously unselected package libgcc-13-dev:amd64.
361s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ...
361s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
361s Selecting previously unselected package gcc-13-x86-64-linux-gnu.
361s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
361s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
361s Selecting previously unselected package gcc-13.
361s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ...
361s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
361s Selecting previously unselected package gcc-x86-64-linux-gnu.
361s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
361s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
361s Selecting previously unselected package gcc.
361s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ...
361s Unpacking gcc (4:13.2.0-7ubuntu1) ...
361s Selecting previously unselected package libstdc++-13-dev:amd64.
361s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ...
361s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
361s Selecting previously unselected package g++-13-x86-64-linux-gnu.
361s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
361s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
362s Selecting previously unselected package g++-13.
362s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ...
362s Unpacking g++-13 (13.2.0-17ubuntu2) ...
362s Selecting previously unselected package g++-x86-64-linux-gnu.
362s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
362s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
362s Selecting previously unselected package g++.
362s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ...
362s Unpacking g++ (4:13.2.0-7ubuntu1) ...
362s Selecting previously unselected package build-essential.
362s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ...
362s Unpacking build-essential (12.10ubuntu1) ...
362s Selecting previously unselected package dctrl-tools.
362s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ...
362s Unpacking dctrl-tools (2.24-3build2) ...
362s Selecting previously unselected package fonts-dejavu-mono.
362s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ...
362s Unpacking fonts-dejavu-mono (2.37-8) ...
362s Selecting previously unselected package fonts-dejavu-core.
362s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ...
362s Unpacking fonts-dejavu-core (2.37-8) ...
362s Selecting previously unselected package fontconfig-config.
362s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ...
362s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
362s Selecting previously unselected package libfontconfig1:amd64.
362s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ...
362s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
362s Selecting previously unselected package fontconfig.
362s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ...
362s Unpacking fontconfig (2.15.0-1ubuntu1) ...
362s Selecting previously unselected package fonts-font-awesome.
362s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
362s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
362s Selecting previously unselected package fonts-glyphicons-halflings.
362s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
362s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
362s Selecting previously unselected package fonts-mathjax.
362s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
362s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
363s Selecting previously unselected package libgfortran5:amd64.
363s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_amd64.deb ...
363s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ...
363s Selecting previously unselected package libgfortran-13-dev:amd64.
363s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ...
363s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ...
363s Selecting previously unselected package gfortran-13-x86-64-linux-gnu.
363s Preparing to unpack .../045-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
363s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
363s Selecting previously unselected package gfortran-13.
363s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_amd64.deb ...
363s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
363s Selecting previously unselected package gfortran-x86-64-linux-gnu.
363s Preparing to unpack .../047-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
363s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
363s Selecting previously unselected package gfortran.
363s Preparing to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ...
363s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
363s Selecting previously unselected package icu-devtools.
363s Preparing to unpack .../049-icu-devtools_74.2-1ubuntu1_amd64.deb ...
363s Unpacking icu-devtools (74.2-1ubuntu1) ...
363s Selecting previously unselected package javascript-common.
363s Preparing to unpack .../050-javascript-common_11+nmu1_all.deb ...
363s Unpacking javascript-common (11+nmu1) ...
363s Selecting previously unselected package libblas3:amd64.
363s Preparing to unpack .../051-libblas3_3.12.0-3_amd64.deb ...
363s Unpacking libblas3:amd64 (3.12.0-3) ...
363s Selecting previously unselected package libblas-dev:amd64.
363s Preparing to unpack .../052-libblas-dev_3.12.0-3_amd64.deb ...
363s Unpacking libblas-dev:amd64 (3.12.0-3) ...
363s Selecting previously unselected package libbz2-dev:amd64.
363s Preparing to unpack .../053-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ...
363s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ...
363s Selecting previously unselected package libpixman-1-0:amd64.
363s Preparing to unpack .../054-libpixman-1-0_0.42.2-1_amd64.deb ...
363s Unpacking libpixman-1-0:amd64 (0.42.2-1) ...
363s Selecting previously unselected package libxcb-render0:amd64.
363s Preparing to unpack .../055-libxcb-render0_1.15-1_amd64.deb ...
363s Unpacking libxcb-render0:amd64 (1.15-1) ...
363s Selecting previously unselected package libxcb-shm0:amd64.
363s Preparing to unpack .../056-libxcb-shm0_1.15-1_amd64.deb ...
363s Unpacking libxcb-shm0:amd64 (1.15-1) ...
363s Selecting previously unselected package libxrender1:amd64.
363s Preparing to unpack .../057-libxrender1_1%3a0.9.10-1.1_amd64.deb ...
363s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ...
363s Selecting previously unselected package libcairo2:amd64.
363s Preparing to unpack .../058-libcairo2_1.18.0-1_amd64.deb ...
363s Unpacking libcairo2:amd64 (1.18.0-1) ...
363s Selecting previously unselected package libcurl4t64:amd64.
363s Preparing to unpack .../059-libcurl4t64_8.5.0-2ubuntu7_amd64.deb ...
363s Unpacking libcurl4t64:amd64 (8.5.0-2ubuntu7) ...
363s Selecting previously unselected package libdatrie1:amd64.
363s Preparing to unpack .../060-libdatrie1_0.2.13-3_amd64.deb ...
363s Unpacking libdatrie1:amd64 (0.2.13-3) ...
363s Selecting previously unselected package libdeflate0:amd64.
363s Preparing to unpack .../061-libdeflate0_1.19-1_amd64.deb ...
363s Unpacking libdeflate0:amd64 (1.19-1) ...
363s Selecting previously unselected package libgraphite2-3:amd64.
363s Preparing to unpack .../062-libgraphite2-3_1.3.14-2_amd64.deb ...
363s Unpacking libgraphite2-3:amd64 (1.3.14-2) ...
363s Selecting previously unselected package libharfbuzz0b:amd64.
363s Preparing to unpack .../063-libharfbuzz0b_8.3.0-2_amd64.deb ...
363s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ...
363s Selecting previously unselected package x11-common.
363s Preparing to unpack .../064-x11-common_1%3a7.7+23ubuntu2_all.deb ...
363s Unpacking x11-common (1:7.7+23ubuntu2) ...
363s Selecting previously unselected package libice6:amd64.
363s Preparing to unpack .../065-libice6_2%3a1.0.10-1build2_amd64.deb ...
363s Unpacking libice6:amd64 (2:1.0.10-1build2) ...
363s Selecting previously unselected package libicu-dev:amd64.
363s Preparing to unpack .../066-libicu-dev_74.2-1ubuntu1_amd64.deb ...
363s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ...
364s Selecting previously unselected package libjpeg-turbo8:amd64.
364s Preparing to unpack .../067-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ...
364s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ...
364s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
364s Preparing to unpack .../068-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ...
364s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ...
364s Selecting previously unselected package libjpeg8:amd64.
364s Preparing to unpack .../069-libjpeg8_8c-2ubuntu11_amd64.deb ...
364s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
364s Selecting previously unselected package libjpeg8-dev:amd64.
364s Preparing to unpack .../070-libjpeg8-dev_8c-2ubuntu11_amd64.deb ...
364s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ...
364s Selecting previously unselected package libjpeg-dev:amd64.
364s Preparing to unpack .../071-libjpeg-dev_8c-2ubuntu11_amd64.deb ...
364s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ...
364s Selecting previously unselected package libjs-bootstrap.
364s Preparing to unpack .../072-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
364s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ...
364s Selecting previously unselected package libjs-popper.js.
364s Preparing to unpack .../073-libjs-popper.js_1.16.1+ds-6_all.deb ...
364s Unpacking libjs-popper.js (1.16.1+ds-6) ...
364s Selecting previously unselected package libjs-bootstrap4.
364s Preparing to unpack .../074-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ...
364s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ...
364s Selecting previously unselected package libjs-d3.
364s Preparing to unpack .../075-libjs-d3_3.5.17-4_all.deb ...
364s Unpacking libjs-d3 (3.5.17-4) ...
364s Selecting previously unselected package libjs-es5-shim.
364s Preparing to unpack .../076-libjs-es5-shim_4.6.7-2_all.deb ...
364s Unpacking libjs-es5-shim (4.6.7-2) ...
364s Selecting previously unselected package libjs-highlight.js.
364s Preparing to unpack .../077-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ...
364s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ...
364s Selecting previously unselected package libjs-jquery.
364s Preparing to unpack .../078-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
364s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
364s Selecting previously unselected package libjs-jquery-datatables.
364s Preparing to unpack .../079-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ...
364s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ...
364s Selecting previously unselected package libjs-sifter.js.
364s Preparing to unpack .../080-libjs-sifter.js_0.6.0+dfsg-3_all.deb ...
364s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ...
364s Selecting previously unselected package libjs-microplugin.js.
364s Preparing to unpack .../081-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ...
364s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ...
364s Selecting previously unselected package libjs-jquery-selectize.js.
364s Preparing to unpack .../082-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ...
364s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
364s Selecting previously unselected package libjs-jquery-ui.
364s Preparing to unpack .../083-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
364s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
364s Selecting previously unselected package libjs-json.
364s Preparing to unpack .../084-libjs-json_0~20221030+~1.0.8-1_all.deb ...
364s Unpacking libjs-json (0~20221030+~1.0.8-1) ...
364s Selecting previously unselected package libjs-prettify.
364s Preparing to unpack .../085-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ...
364s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ...
364s Selecting previously unselected package liblapack3:amd64.
364s Preparing to unpack .../086-liblapack3_3.12.0-3_amd64.deb ...
364s Unpacking liblapack3:amd64 (3.12.0-3) ...
365s Selecting previously unselected package liblapack-dev:amd64.
365s Preparing to unpack .../087-liblapack-dev_3.12.0-3_amd64.deb ...
365s Unpacking liblapack-dev:amd64 (3.12.0-3) ...
365s Selecting previously unselected package liblerc4:amd64.
365s Preparing to unpack .../088-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ...
365s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ...
365s Selecting previously unselected package liblua5.4-0:amd64.
365s Preparing to unpack .../089-liblua5.4-0_5.4.6-3_amd64.deb ...
365s Unpacking liblua5.4-0:amd64 (5.4.6-3) ...
365s Selecting previously unselected package libncurses-dev:amd64.
365s Preparing to unpack .../090-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ...
365s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ...
365s Selecting previously unselected package libthai-data.
365s Preparing to unpack .../091-libthai-data_0.1.29-2_all.deb ...
365s Unpacking libthai-data (0.1.29-2) ...
365s Selecting previously unselected package libthai0:amd64.
365s Preparing to unpack .../092-libthai0_0.1.29-2_amd64.deb ...
365s Unpacking libthai0:amd64 (0.1.29-2) ...
365s Selecting previously unselected package libpango-1.0-0:amd64.
365s Preparing to unpack .../093-libpango-1.0-0_1.51.0+ds-4_amd64.deb ...
365s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ...
365s Selecting previously unselected package libpangoft2-1.0-0:amd64.
365s Preparing to unpack .../094-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ...
365s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ...
365s Selecting previously unselected package libpangocairo-1.0-0:amd64.
365s Preparing to unpack .../095-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ...
365s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ...
365s Selecting previously unselected package libpaper1:amd64.
365s Preparing to unpack .../096-libpaper1_1.1.29_amd64.deb ...
365s Unpacking libpaper1:amd64 (1.1.29) ...
365s Selecting previously unselected package libpaper-utils.
365s Preparing to unpack .../097-libpaper-utils_1.1.29_amd64.deb ...
365s Unpacking libpaper-utils (1.1.29) ...
365s Selecting previously unselected package libpcre2-16-0:amd64.
365s Preparing to unpack .../098-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ...
365s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ...
365s Selecting previously unselected package libpcre2-32-0:amd64.
365s Preparing to unpack .../099-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ...
365s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ...
365s Selecting previously unselected package libpcre2-posix3:amd64.
365s Preparing to unpack .../100-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ...
365s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ...
365s Selecting previously unselected package libpcre2-dev:amd64.
365s Preparing to unpack .../101-libpcre2-dev_10.42-4ubuntu1_amd64.deb ...
365s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ...
365s Selecting previously unselected package libpkgconf3:amd64.
365s Preparing to unpack .../102-libpkgconf3_1.8.1-2_amd64.deb ...
365s Unpacking libpkgconf3:amd64 (1.8.1-2) ...
365s Selecting previously unselected package zlib1g-dev:amd64.
365s Preparing to unpack .../103-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ...
365s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ...
365s Selecting previously unselected package libpng-dev:amd64.
365s Preparing to unpack .../104-libpng-dev_1.6.43-1_amd64.deb ...
365s Unpacking libpng-dev:amd64 (1.6.43-1) ...
365s Selecting previously unselected package libreadline-dev:amd64.
365s Preparing to unpack .../105-libreadline-dev_8.2-3_amd64.deb ...
365s Unpacking libreadline-dev:amd64 (8.2-3) ...
365s Selecting previously unselected package libsharpyuv0:amd64.
365s Preparing to unpack .../106-libsharpyuv0_1.3.2-0.4_amd64.deb ...
365s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ...
365s Selecting previously unselected package libsm6:amd64.
365s Preparing to unpack .../107-libsm6_2%3a1.2.3-1build2_amd64.deb ...
365s Unpacking libsm6:amd64 (2:1.2.3-1build2) ...
365s Selecting previously unselected package libtcl8.6:amd64.
365s Preparing to unpack .../108-libtcl8.6_8.6.13+dfsg-2_amd64.deb ...
365s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ...
365s Selecting previously unselected package libjbig0:amd64.
365s Preparing to unpack .../109-libjbig0_2.1-6.1ubuntu1_amd64.deb ...
365s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ...
365s Selecting previously unselected package libwebp7:amd64.
365s Preparing to unpack .../110-libwebp7_1.3.2-0.4_amd64.deb ...
365s Unpacking libwebp7:amd64 (1.3.2-0.4) ...
365s Selecting previously unselected package libtiff6:amd64.
365s Preparing to unpack .../111-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ...
365s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ...
365s Selecting previously unselected package libxft2:amd64.
365s Preparing to unpack .../112-libxft2_2.3.6-1_amd64.deb ...
365s Unpacking libxft2:amd64 (2.3.6-1) ...
365s Selecting previously unselected package libxss1:amd64.
365s Preparing to unpack .../113-libxss1_1%3a1.2.3-1build2_amd64.deb ...
365s Unpacking libxss1:amd64 (1:1.2.3-1build2) ...
365s Selecting previously unselected package libtk8.6:amd64.
365s Preparing to unpack .../114-libtk8.6_8.6.13-2_amd64.deb ...
365s Unpacking libtk8.6:amd64 (8.6.13-2) ...
366s Selecting previously unselected package libxt6:amd64.
366s Preparing to unpack .../115-libxt6_1%3a1.2.1-1.1_amd64.deb ...
366s Unpacking libxt6:amd64 (1:1.2.1-1.1) ...
366s Selecting previously unselected package zip.
366s Preparing to unpack .../116-zip_3.0-13_amd64.deb ...
366s Unpacking zip (3.0-13) ...
366s Selecting previously unselected package unzip.
366s Preparing to unpack .../117-unzip_6.0-28ubuntu3_amd64.deb ...
366s Unpacking unzip (6.0-28ubuntu3) ...
366s Selecting previously unselected package xdg-utils.
366s Preparing to unpack .../118-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
366s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
366s Selecting previously unselected package r-base-core.
366s Preparing to unpack .../119-r-base-core_4.3.2-1build1_amd64.deb ...
366s Unpacking r-base-core (4.3.2-1build1) ...
366s Selecting previously unselected package r-cran-littler.
366s Preparing to unpack .../120-r-cran-littler_0.3.19-1_amd64.deb ...
366s Unpacking r-cran-littler (0.3.19-1) ...
366s Selecting previously unselected package littler.
366s Preparing to unpack .../121-littler_0.3.19-1_all.deb ...
366s Unpacking littler (0.3.19-1) ...
366s Selecting previously unselected package node-bootstrap-sass.
366s Preparing to unpack .../122-node-bootstrap-sass_3.4.3-2_all.deb ...
366s Unpacking node-bootstrap-sass (3.4.3-2) ...
366s Selecting previously unselected package node-html5shiv.
366s Preparing to unpack .../123-node-html5shiv_3.7.3+dfsg-5_all.deb ...
366s Unpacking node-html5shiv (3.7.3+dfsg-5) ...
366s Selecting previously unselected package node-normalize.css.
366s Preparing to unpack .../124-node-normalize.css_8.0.1-5_all.deb ...
366s Unpacking node-normalize.css (8.0.1-5) ...
366s Selecting previously unselected package pandoc-data.
366s Preparing to unpack .../125-pandoc-data_3.1.3-1_all.deb ...
366s Unpacking pandoc-data (3.1.3-1) ...
366s Selecting previously unselected package pandoc.
366s Preparing to unpack .../126-pandoc_3.1.3+ds-2_amd64.deb ...
366s Unpacking pandoc (3.1.3+ds-2) ...
367s Selecting previously unselected package pkgconf-bin.
367s Preparing to unpack .../127-pkgconf-bin_1.8.1-2_amd64.deb ...
367s Unpacking pkgconf-bin (1.8.1-2) ...
367s Selecting previously unselected package pkgconf:amd64.
367s Preparing to unpack .../128-pkgconf_1.8.1-2_amd64.deb ...
367s Unpacking pkgconf:amd64 (1.8.1-2) ...
367s Selecting previously unselected package pkg-config:amd64.
367s Preparing to unpack .../129-pkg-config_1.8.1-2_amd64.deb ...
367s Unpacking pkg-config:amd64 (1.8.1-2) ...
367s Selecting previously unselected package liblzma-dev:amd64.
367s Preparing to unpack .../130-liblzma-dev_5.4.5-0.3_amd64.deb ...
367s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ...
367s Selecting previously unselected package r-base-dev.
367s Preparing to unpack .../131-r-base-dev_4.3.2-1build1_all.deb ...
367s Unpacking r-base-dev (4.3.2-1build1) ...
367s Selecting previously unselected package pkg-r-autopkgtest.
367s Preparing to unpack .../132-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
367s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
367s Selecting previously unselected package r-bioc-biocgenerics.
367s Preparing to unpack .../133-r-bioc-biocgenerics_0.48.1-2_all.deb ...
367s Unpacking r-bioc-biocgenerics (0.48.1-2) ...
367s Selecting previously unselected package r-bioc-biobase.
367s Preparing to unpack .../134-r-bioc-biobase_2.62.0-1_amd64.deb ...
367s Unpacking r-bioc-biobase (2.62.0-1) ...
367s Selecting previously unselected package r-bioc-s4vectors.
367s Preparing to unpack .../135-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ...
367s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ...
367s Selecting previously unselected package r-bioc-iranges.
367s Preparing to unpack .../136-r-bioc-iranges_2.36.0-1_amd64.deb ...
367s Unpacking r-bioc-iranges (2.36.0-1) ...
367s Selecting previously unselected package r-cran-dbi.
367s Preparing to unpack .../137-r-cran-dbi_1.2.2-1_all.deb ...
367s Unpacking r-cran-dbi (1.2.2-1) ...
367s Selecting previously unselected package r-cran-bit.
367s Preparing to unpack .../138-r-cran-bit_4.0.5-1_amd64.deb ...
367s Unpacking r-cran-bit (4.0.5-1) ...
367s Selecting previously unselected package r-cran-bit64.
367s Preparing to unpack .../139-r-cran-bit64_4.0.5-1_amd64.deb ...
367s Unpacking r-cran-bit64 (4.0.5-1) ...
367s Selecting previously unselected package r-cran-rlang.
367s Preparing to unpack .../140-r-cran-rlang_1.1.3-1_amd64.deb ...
367s Unpacking r-cran-rlang (1.1.3-1) ...
367s Selecting previously unselected package r-cran-cli.
367s Preparing to unpack .../141-r-cran-cli_3.6.2-1_amd64.deb ...
367s Unpacking r-cran-cli (3.6.2-1) ...
368s Selecting previously unselected package r-cran-glue.
368s Preparing to unpack .../142-r-cran-glue_1.7.0-1_amd64.deb ...
368s Unpacking r-cran-glue (1.7.0-1) ...
368s Selecting previously unselected package r-cran-lifecycle.
368s Preparing to unpack .../143-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
368s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
368s Selecting previously unselected package r-cran-vctrs.
368s Preparing to unpack .../144-r-cran-vctrs_0.6.5-1_amd64.deb ...
368s Unpacking r-cran-vctrs (0.6.5-1) ...
368s Selecting previously unselected package r-cran-blob.
368s Preparing to unpack .../145-r-cran-blob_1.2.4-1_all.deb ...
368s Unpacking r-cran-blob (1.2.4-1) ...
368s Selecting previously unselected package r-cran-fastmap.
368s Preparing to unpack .../146-r-cran-fastmap_1.1.1-1_amd64.deb ...
368s Unpacking r-cran-fastmap (1.1.1-1) ...
368s Selecting previously unselected package r-cran-cachem.
368s Preparing to unpack .../147-r-cran-cachem_1.0.8-1_amd64.deb ...
368s Unpacking r-cran-cachem (1.0.8-1) ...
368s Selecting previously unselected package r-cran-memoise.
368s Preparing to unpack .../148-r-cran-memoise_2.0.1-1_all.deb ...
368s Unpacking r-cran-memoise (2.0.1-1) ...
368s Selecting previously unselected package r-cran-pkgconfig.
368s Preparing to unpack .../149-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
368s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
368s Selecting previously unselected package r-cran-plogr.
368s Preparing to unpack .../150-r-cran-plogr_0.2.0-3build1_all.deb ...
368s Unpacking r-cran-plogr (0.2.0-3build1) ...
368s Selecting previously unselected package r-cran-cpp11.
368s Preparing to unpack .../151-r-cran-cpp11_0.4.7-1_all.deb ...
368s Unpacking r-cran-cpp11 (0.4.7-1) ...
368s Selecting previously unselected package r-cran-rsqlite.
368s Preparing to unpack .../152-r-cran-rsqlite_2.3.4-1_amd64.deb ...
368s Unpacking r-cran-rsqlite (2.3.4-1) ...
368s Selecting previously unselected package r-cran-curl.
368s Preparing to unpack .../153-r-cran-curl_5.2.0+dfsg-1_amd64.deb ...
368s Unpacking r-cran-curl (5.2.0+dfsg-1) ...
368s Selecting previously unselected package r-cran-jsonlite.
368s Preparing to unpack .../154-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ...
368s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ...
368s Selecting previously unselected package r-cran-mime.
368s Preparing to unpack .../155-r-cran-mime_0.12-1_amd64.deb ...
368s Unpacking r-cran-mime (0.12-1) ...
368s Selecting previously unselected package r-cran-sys.
368s Preparing to unpack .../156-r-cran-sys_3.4.2-1_amd64.deb ...
368s Unpacking r-cran-sys (3.4.2-1) ...
368s Selecting previously unselected package r-cran-askpass.
368s Preparing to unpack .../157-r-cran-askpass_1.2.0-1_amd64.deb ...
368s Unpacking r-cran-askpass (1.2.0-1) ...
368s Selecting previously unselected package r-cran-openssl.
368s Preparing to unpack .../158-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ...
368s Unpacking r-cran-openssl (2.1.1+dfsg-2) ...
368s Selecting previously unselected package r-cran-r6.
368s Preparing to unpack .../159-r-cran-r6_2.5.1-1_all.deb ...
368s Unpacking r-cran-r6 (2.5.1-1) ...
368s Selecting previously unselected package r-cran-httr.
368s Preparing to unpack .../160-r-cran-httr_1.4.7+dfsg-1_all.deb ...
368s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
368s Selecting previously unselected package r-cran-png.
368s Preparing to unpack .../161-r-cran-png_0.1-8-1_amd64.deb ...
368s Unpacking r-cran-png (0.1-8-1) ...
368s Selecting previously unselected package r-bioc-zlibbioc.
368s Preparing to unpack .../162-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ...
368s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ...
368s Selecting previously unselected package r-bioc-xvector.
368s Preparing to unpack .../163-r-bioc-xvector_0.42.0-1_amd64.deb ...
368s Unpacking r-bioc-xvector (0.42.0-1) ...
368s Selecting previously unselected package r-cran-bitops.
368s Preparing to unpack .../164-r-cran-bitops_1.0-7-1_amd64.deb ...
368s Unpacking r-cran-bitops (1.0-7-1) ...
368s Selecting previously unselected package r-cran-rcurl.
368s Preparing to unpack .../165-r-cran-rcurl_1.98-1.14+dfsg-1build1_amd64.deb ...
368s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1build1) ...
368s Selecting previously unselected package r-bioc-genomeinfodbdata.
368s Preparing to unpack .../166-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ...
368s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ...
368s Selecting previously unselected package r-bioc-genomeinfodb.
368s Preparing to unpack .../167-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ...
368s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
368s Selecting previously unselected package r-cran-crayon.
368s Preparing to unpack .../168-r-cran-crayon_1.5.2-1_all.deb ...
368s Unpacking r-cran-crayon (1.5.2-1) ...
369s Selecting previously unselected package r-bioc-biostrings.
369s Preparing to unpack .../169-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ...
369s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ...
369s Selecting previously unselected package r-bioc-keggrest.
369s Preparing to unpack .../170-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ...
369s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ...
369s Selecting previously unselected package r-bioc-annotationdbi.
369s Preparing to unpack .../171-r-bioc-annotationdbi_1.64.1-1_all.deb ...
369s Unpacking r-bioc-annotationdbi (1.64.1-1) ...
369s Selecting previously unselected package r-bioc-go.db.
369s Preparing to unpack .../172-r-bioc-go.db_3.18.0-1_all.deb ...
369s Unpacking r-bioc-go.db (3.18.0-1) ...
369s Selecting previously unselected package r-cran-digest.
369s Preparing to unpack .../173-r-cran-digest_0.6.34-1_amd64.deb ...
369s Unpacking r-cran-digest (0.6.34-1) ...
369s Selecting previously unselected package r-cran-fs.
369s Preparing to unpack .../174-r-cran-fs_1.6.3+dfsg-1_amd64.deb ...
369s Unpacking r-cran-fs (1.6.3+dfsg-1) ...
369s Selecting previously unselected package r-cran-yulab.utils.
369s Preparing to unpack .../175-r-cran-yulab.utils_0.1.4-1_all.deb ...
369s Unpacking r-cran-yulab.utils (0.1.4-1) ...
369s Selecting previously unselected package r-cran-pkgkitten.
369s Preparing to unpack .../176-r-cran-pkgkitten_0.2.3-1_all.deb ...
369s Unpacking r-cran-pkgkitten (0.2.3-1) ...
369s Selecting previously unselected package r-cran-rcpp.
369s Preparing to unpack .../177-r-cran-rcpp_1.0.12-1_amd64.deb ...
369s Unpacking r-cran-rcpp (1.0.12-1) ...
369s Selecting previously unselected package r-bioc-gosemsim.
369s Preparing to unpack .../178-r-bioc-gosemsim_2.28.1-1_amd64.deb ...
369s Unpacking r-bioc-gosemsim (2.28.1-1) ...
369s Selecting previously unselected package r-cran-codetools.
369s Preparing to unpack .../179-r-cran-codetools_0.2-19-1_all.deb ...
369s Unpacking r-cran-codetools (0.2-19-1) ...
369s Selecting previously unselected package r-cran-iterators.
369s Preparing to unpack .../180-r-cran-iterators_1.0.14-1_all.deb ...
369s Unpacking r-cran-iterators (1.0.14-1) ...
369s Selecting previously unselected package r-cran-foreach.
370s Preparing to unpack .../181-r-cran-foreach_1.5.2-1_all.deb ...
370s Unpacking r-cran-foreach (1.5.2-1) ...
370s Selecting previously unselected package r-cran-doparallel.
370s Preparing to unpack .../182-r-cran-doparallel_1.0.17-1_all.deb ...
370s Unpacking r-cran-doparallel (1.0.17-1) ...
370s Selecting previously unselected package r-cran-rjson.
370s Preparing to unpack .../183-r-cran-rjson_0.2.21-1_amd64.deb ...
370s Unpacking r-cran-rjson (0.2.21-1) ...
370s Selecting previously unselected package r-bioc-rcpi.
370s Preparing to unpack .../184-r-bioc-rcpi_1.38.0+ds-1_all.deb ...
370s Unpacking r-bioc-rcpi (1.38.0+ds-1) ...
370s Selecting previously unselected package r-cran-base64enc.
370s Preparing to unpack .../185-r-cran-base64enc_0.1-3-3_amd64.deb ...
370s Unpacking r-cran-base64enc (0.1-3-3) ...
370s Selecting previously unselected package r-cran-brio.
370s Preparing to unpack .../186-r-cran-brio_1.1.4-1_amd64.deb ...
370s Unpacking r-cran-brio (1.1.4-1) ...
370s Selecting previously unselected package r-cran-ellipsis.
370s Preparing to unpack .../187-r-cran-ellipsis_0.3.2-2_amd64.deb ...
370s Unpacking r-cran-ellipsis (0.3.2-2) ...
370s Selecting previously unselected package r-cran-htmltools.
370s Preparing to unpack .../188-r-cran-htmltools_0.5.7-1_amd64.deb ...
370s Unpacking r-cran-htmltools (0.5.7-1) ...
370s Selecting previously unselected package r-cran-jquerylib.
370s Preparing to unpack .../189-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
370s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
370s Selecting previously unselected package r-cran-rappdirs.
370s Preparing to unpack .../190-r-cran-rappdirs_0.3.3-1_amd64.deb ...
370s Unpacking r-cran-rappdirs (0.3.3-1) ...
370s Selecting previously unselected package r-cran-sass.
370s Preparing to unpack .../191-r-cran-sass_0.4.8+dfsg-1_amd64.deb ...
370s Unpacking r-cran-sass (0.4.8+dfsg-1) ...
370s Selecting previously unselected package r-cran-bslib.
370s Preparing to unpack .../192-r-cran-bslib_0.6.1+dfsg-1_all.deb ...
370s Unpacking r-cran-bslib (0.6.1+dfsg-1) ...
370s Selecting previously unselected package r-cran-ps.
370s Preparing to unpack .../193-r-cran-ps_1.7.6-1_amd64.deb ...
370s Unpacking r-cran-ps (1.7.6-1) ...
370s Selecting previously unselected package r-cran-processx.
370s Preparing to unpack .../194-r-cran-processx_3.8.3-1_amd64.deb ...
370s Unpacking r-cran-processx (3.8.3-1) ...
370s Selecting previously unselected package r-cran-callr.
370s Preparing to unpack .../195-r-cran-callr_3.7.3-2_all.deb ...
370s Unpacking r-cran-callr (3.7.3-2) ...
370s Selecting previously unselected package r-cran-commonmark.
370s Preparing to unpack .../196-r-cran-commonmark_1.9.1-1_amd64.deb ...
370s Unpacking r-cran-commonmark (1.9.1-1) ...
370s Selecting previously unselected package r-cran-desc.
370s Preparing to unpack .../197-r-cran-desc_1.4.3-1_all.deb ...
370s Unpacking r-cran-desc (1.4.3-1) ...
370s Selecting previously unselected package r-cran-diffobj.
370s Preparing to unpack .../198-r-cran-diffobj_0.3.5-1_amd64.deb ...
370s Unpacking r-cran-diffobj (0.3.5-1) ...
370s Selecting previously unselected package r-cran-evaluate.
370s Preparing to unpack .../199-r-cran-evaluate_0.23-1_all.deb ...
370s Unpacking r-cran-evaluate (0.23-1) ...
370s Selecting previously unselected package r-cran-fansi.
370s Preparing to unpack .../200-r-cran-fansi_1.0.5-1_amd64.deb ...
370s Unpacking r-cran-fansi (1.0.5-1) ...
370s Selecting previously unselected package r-cran-fontawesome.
370s Preparing to unpack .../201-r-cran-fontawesome_0.5.2-1_all.deb ...
370s Unpacking r-cran-fontawesome (0.5.2-1) ...
370s Selecting previously unselected package r-cran-xfun.
370s Preparing to unpack .../202-r-cran-xfun_0.41+dfsg-1_amd64.deb ...
370s Unpacking r-cran-xfun (0.41+dfsg-1) ...
370s Selecting previously unselected package r-cran-highr.
370s Preparing to unpack .../203-r-cran-highr_0.10+dfsg-1_all.deb ...
370s Unpacking r-cran-highr (0.10+dfsg-1) ...
370s Selecting previously unselected package r-cran-later.
371s Preparing to unpack .../204-r-cran-later_1.3.2+dfsg-1_amd64.deb ...
371s Unpacking r-cran-later (1.3.2+dfsg-1) ...
371s Selecting previously unselected package r-cran-magrittr.
371s Preparing to unpack .../205-r-cran-magrittr_2.0.3-1_amd64.deb ...
371s Unpacking r-cran-magrittr (2.0.3-1) ...
371s Selecting previously unselected package r-cran-promises.
371s Preparing to unpack .../206-r-cran-promises_1.2.1+dfsg-1_amd64.deb ...
371s Unpacking r-cran-promises (1.2.1+dfsg-1) ...
371s Selecting previously unselected package r-cran-httpuv.
371s Preparing to unpack .../207-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ...
371s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ...
371s Selecting previously unselected package r-cran-yaml.
371s Preparing to unpack .../208-r-cran-yaml_2.3.8-1_amd64.deb ...
371s Unpacking r-cran-yaml (2.3.8-1) ...
371s Selecting previously unselected package libjs-mathjax.
371s Preparing to unpack .../209-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
371s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
371s Selecting previously unselected package r-cran-knitr.
371s Preparing to unpack .../210-r-cran-knitr_1.45+dfsg-1_all.deb ...
371s Unpacking r-cran-knitr (1.45+dfsg-1) ...
371s Selecting previously unselected package r-cran-utf8.
371s Preparing to unpack .../211-r-cran-utf8_1.2.4-1_amd64.deb ...
371s Unpacking r-cran-utf8 (1.2.4-1) ...
371s Selecting previously unselected package r-cran-pillar.
371s Preparing to unpack .../212-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
371s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
372s Selecting previously unselected package r-cran-pkgbuild.
372s Preparing to unpack .../213-r-cran-pkgbuild_1.4.3-1_all.deb ...
372s Unpacking r-cran-pkgbuild (1.4.3-1) ...
372s Selecting previously unselected package r-cran-rprojroot.
372s Preparing to unpack .../214-r-cran-rprojroot_2.0.4-1_all.deb ...
372s Unpacking r-cran-rprojroot (2.0.4-1) ...
372s Selecting previously unselected package r-cran-withr.
372s Preparing to unpack .../215-r-cran-withr_2.5.0-1_all.deb ...
372s Unpacking r-cran-withr (2.5.0-1) ...
372s Selecting previously unselected package r-cran-pkgload.
372s Preparing to unpack .../216-r-cran-pkgload_1.3.4-1_all.deb ...
372s Unpacking r-cran-pkgload (1.3.4-1) ...
372s Selecting previously unselected package r-cran-praise.
372s Preparing to unpack .../217-r-cran-praise_1.0.0-4build1_all.deb ...
372s Unpacking r-cran-praise (1.0.0-4build1) ...
372s Selecting previously unselected package r-cran-tibble.
372s Preparing to unpack .../218-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ...
372s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
372s Selecting previously unselected package r-cran-rematch2.
372s Preparing to unpack .../219-r-cran-rematch2_2.1.2-2build1_all.deb ...
372s Unpacking r-cran-rematch2 (2.1.2-2build1) ...
372s Selecting previously unselected package r-cran-stringi.
372s Preparing to unpack .../220-r-cran-stringi_1.8.3-1_amd64.deb ...
372s Unpacking r-cran-stringi (1.8.3-1) ...
372s Selecting previously unselected package r-cran-stringr.
372s Preparing to unpack .../221-r-cran-stringr_1.5.1-1_all.deb ...
372s Unpacking r-cran-stringr (1.5.1-1) ...
372s Selecting previously unselected package r-cran-tinytex.
372s Preparing to unpack .../222-r-cran-tinytex_0.49-1_all.deb ...
372s Unpacking r-cran-tinytex (0.49-1) ...
372s Selecting previously unselected package libjs-modernizr.
372s Preparing to unpack .../223-libjs-modernizr_2.6.2+ds1-5_all.deb ...
372s Unpacking libjs-modernizr (2.6.2+ds1-5) ...
372s Selecting previously unselected package r-cran-xtable.
372s Preparing to unpack .../224-r-cran-xtable_1%3a1.8-4-2_all.deb ...
372s Unpacking r-cran-xtable (1:1.8-4-2) ...
372s Selecting previously unselected package r-cran-sourcetools.
372s Preparing to unpack .../225-r-cran-sourcetools_0.1.7-1-1_amd64.deb ...
372s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
372s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
372s Preparing to unpack .../226-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
372s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
372s Selecting previously unselected package r-cran-shiny.
372s Preparing to unpack .../227-r-cran-shiny_1.8.0+dfsg-1_all.deb ...
372s Unpacking r-cran-shiny (1.8.0+dfsg-1) ...
372s Selecting previously unselected package r-cran-rmarkdown.
372s Preparing to unpack .../228-r-cran-rmarkdown_2.25+dfsg-3_all.deb ...
372s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ...
372s Selecting previously unselected package r-cran-waldo.
372s Preparing to unpack .../229-r-cran-waldo_0.5.2-1build1_all.deb ...
372s Unpacking r-cran-waldo (0.5.2-1build1) ...
372s Selecting previously unselected package r-cran-testthat.
372s Preparing to unpack .../230-r-cran-testthat_3.2.1-1_amd64.deb ...
372s Unpacking r-cran-testthat (3.2.1-1) ...
372s Setting up libjs-json (0~20221030+~1.0.8-1) ...
372s Setting up javascript-common (11+nmu1) ...
372s Setting up libgraphite2-3:amd64 (1.3.14-2) ...
372s Setting up libpixman-1-0:amd64 (0.42.2-1) ...
372s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ...
372s Setting up libpaper1:amd64 (1.1.29) ...
373s 
373s Creating config file /etc/papersize with new version
373s Setting up fonts-mathjax (2.7.9+dfsg-1) ...
373s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ...
373s Setting up libjs-mathjax (2.7.9+dfsg-1) ...
373s Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
373s Setting up libdatrie1:amd64 (0.2.13-3) ...
373s Setting up libjs-popper.js (1.16.1+ds-6) ...
373s Setting up libxcb-render0:amd64 (1.15-1) ...
373s Setting up libjs-sifter.js (0.6.0+dfsg-3) ...
373s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
373s Setting up unzip (6.0-28ubuntu3) ...
373s Setting up x11-common (1:7.7+23ubuntu2) ...
373s Setting up node-html5shiv (3.7.3+dfsg-5) ...
373s Setting up libpsl5t64:amd64 (0.21.2-1.1) ...
373s Setting up libdeflate0:amd64 (1.19-1) ...
373s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ...
373s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ...
373s Setting up libxcb-shm0:amd64 (1.15-1) ...
373s Setting up libpaper-utils (1.1.29) ...
373s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ...
373s Setting up libjs-modernizr (2.6.2+ds1-5) ...
373s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ...
373s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ...
373s Setting up libjs-es5-shim (4.6.7-2) ...
373s Setting up zip (3.0-13) ...
373s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ...
373s Setting up libblas3:amd64 (3.12.0-3) ...
373s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
373s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
373s Setting up libpkgconf3:amd64 (1.8.1-2) ...
373s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
373s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ...
373s Setting up libjs-d3 (3.5.17-4) ...
373s Setting up fonts-dejavu-mono (2.37-8) ...
373s Setting up libmpc3:amd64 (1.3.1-1) ...
373s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ...
373s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ...
373s Setting up icu-devtools (74.2-1ubuntu1) ...
373s Setting up fonts-dejavu-core (2.37-8) ...
373s Setting up pkgconf-bin (1.8.1-2) ...
373s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ...
373s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ...
373s Setting up libwebp7:amd64 (1.3.2-0.4) ...
373s Setting up liblzma-dev:amd64 (5.4.5-0.3) ...
373s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ...
373s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ...
373s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ...
373s Setting up libnsl-dev:amd64 (1.3.0-3) ...
373s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ...
373s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ...
373s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ...
373s Setting up liblua5.4-0:amd64 (5.4.6-3) ...
373s Setting up libharfbuzz0b:amd64 (8.3.0-2) ...
373s Setting up libthai-data (0.1.29-2) ...
373s Setting up node-bootstrap-sass (3.4.3-2) ...
373s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ...
373s Setting up libxss1:amd64 (1:1.2.3-1build2) ...
373s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ...
373s Setting up pandoc-data (3.1.3-1) ...
373s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ...
373s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
373s Setting up libisl23:amd64 (0.26-3) ...
373s Setting up libc-dev-bin (2.39-0ubuntu2) ...
373s Setting up node-normalize.css (8.0.1-5) ...
373s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
373s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
373s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
373s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ...
373s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ...
373s Setting up libblas-dev:amd64 (3.12.0-3) ...
373s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
373s Setting up dctrl-tools (2.24-3build2) ...
373s Setting up libjs-bootstrap (3.4.1+dfsg-3) ...
373s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ...
373s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
373s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
373s Setting up libice6:amd64 (2:1.0.10-1build2) ...
373s Setting up liblapack3:amd64 (3.12.0-3) ...
373s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
373s Setting up libcurl4t64:amd64 (8.5.0-2ubuntu7) ...
373s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
373s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
373s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
373s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
373s Setting up pkgconf:amd64 (1.8.1-2) ...
373s Setting up libthai0:amd64 (0.1.29-2) ...
373s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
373s Setting up pandoc (3.1.3+ds-2) ...
373s Setting up liblapack-dev:amd64 (3.12.0-3) ...
373s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
373s Setting up pkg-config:amd64 (1.8.1-2) ...
373s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
373s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ...
373s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ...
373s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
373s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ...
373s Setting up libsm6:amd64 (2:1.2.3-1build2) ...
373s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ...
373s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
373s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ...
373s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
373s Setting up fontconfig (2.15.0-1ubuntu1) ...
375s Regenerating fonts cache... done.
375s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ...
375s Setting up libxft2:amd64 (2.3.6-1) ...
375s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ...
375s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ...
375s Setting up cpp-13 (13.2.0-17ubuntu2) ...
375s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
375s Setting up libtk8.6:amd64 (8.6.13-2) ...
375s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ...
375s Setting up libreadline-dev:amd64 (8.2-3) ...
375s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
375s Setting up libcairo2:amd64 (1.18.0-1) ...
375s Setting up gcc-13 (13.2.0-17ubuntu2) ...
375s Setting up libxt6:amd64 (1:1.2.1-1.1) ...
375s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ...
375s Setting up cpp (4:13.2.0-7ubuntu1) ...
376s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ...
376s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ...
376s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ...
376s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
376s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
376s Setting up libpng-dev:amd64 (1.6.43-1) ...
376s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
376s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
376s Setting up gcc (4:13.2.0-7ubuntu1) ...
376s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
376s Setting up r-base-core (4.3.2-1build1) ...
376s 
376s Creating config file /etc/R/Renviron with new version
376s Setting up r-cran-crayon (1.5.2-1) ...
376s Setting up r-cran-sourcetools (0.1.7-1-1) ...
376s Setting up r-cran-ps (1.7.6-1) ...
376s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
376s Setting up r-cran-commonmark (1.9.1-1) ...
376s Setting up r-cran-r6 (2.5.1-1) ...
376s Setting up r-cran-pkgkitten (0.2.3-1) ...
376s Setting up r-cran-magrittr (2.0.3-1) ...
376s Setting up r-cran-rappdirs (0.3.3-1) ...
376s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
376s Setting up r-cran-littler (0.3.19-1) ...
376s Setting up r-cran-fs (1.6.3+dfsg-1) ...
376s Setting up r-cran-rcpp (1.0.12-1) ...
376s Setting up r-cran-curl (5.2.0+dfsg-1) ...
376s Setting up r-cran-codetools (0.2-19-1) ...
376s Setting up g++-13 (13.2.0-17ubuntu2) ...
376s Setting up r-cran-brio (1.1.4-1) ...
376s Setting up r-cran-diffobj (0.3.5-1) ...
376s Setting up r-bioc-biocgenerics (0.48.1-2) ...
376s Setting up r-cran-rlang (1.1.3-1) ...
376s Setting up littler (0.3.19-1) ...
376s Setting up r-cran-xfun (0.41+dfsg-1) ...
376s Setting up r-cran-sys (3.4.2-1) ...
376s Setting up r-cran-plogr (0.2.0-3build1) ...
376s Setting up r-cran-withr (2.5.0-1) ...
376s Setting up r-cran-processx (3.8.3-1) ...
376s Setting up r-cran-mime (0.12-1) ...
376s Setting up r-cran-praise (1.0.0-4build1) ...
376s Setting up r-cran-base64enc (0.1-3-3) ...
376s Setting up r-cran-iterators (1.0.14-1) ...
376s Setting up r-cran-digest (0.6.34-1) ...
376s Setting up r-cran-yaml (2.3.8-1) ...
376s Setting up r-cran-evaluate (0.23-1) ...
376s Setting up r-cran-dbi (1.2.2-1) ...
376s Setting up r-cran-highr (0.10+dfsg-1) ...
376s Setting up r-cran-foreach (1.5.2-1) ...
376s Setting up r-cran-fansi (1.0.5-1) ...
376s Setting up r-cran-glue (1.7.0-1) ...
376s Setting up r-cran-bit (4.0.5-1) ...
376s Setting up r-cran-xtable (1:1.8-4-2) ...
376s Setting up r-cran-cli (3.6.2-1) ...
376s Setting up gfortran (4:13.2.0-7ubuntu1) ...
376s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
376s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
376s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
376s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
376s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
376s Setting up r-cran-bitops (1.0-7-1) ...
376s Setting up r-cran-rprojroot (2.0.4-1) ...
376s Setting up r-cran-bit64 (4.0.5-1) ...
376s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
376s Setting up r-cran-askpass (1.2.0-1) ...
376s Setting up r-cran-fastmap (1.1.1-1) ...
376s Setting up r-cran-png (0.1-8-1) ...
376s Setting up r-bioc-biobase (2.62.0-1) ...
376s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
376s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
376s Setting up r-cran-utf8 (1.2.4-1) ...
376s Setting up r-cran-stringi (1.8.3-1) ...
376s Setting up r-cran-cpp11 (0.4.7-1) ...
376s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
376s Setting up r-cran-later (1.3.2+dfsg-1) ...
376s Setting up r-cran-doparallel (1.0.17-1) ...
376s Setting up r-cran-tinytex (0.49-1) ...
376s Setting up r-cran-knitr (1.45+dfsg-1) ...
376s Setting up g++ (4:13.2.0-7ubuntu1) ...
376s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
376s Setting up r-cran-cachem (1.0.8-1) ...
376s Setting up build-essential (12.10ubuntu1) ...
376s Setting up r-bioc-iranges (2.36.0-1) ...
376s Setting up r-cran-rjson (0.2.21-1) ...
376s Setting up r-cran-rcurl (1.98-1.14+dfsg-1build1) ...
376s Setting up r-cran-vctrs (0.6.5-1) ...
376s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
376s Setting up r-cran-ellipsis (0.3.2-2) ...
376s Setting up r-cran-openssl (2.1.1+dfsg-2) ...
376s Setting up r-base-dev (4.3.2-1build1) ...
376s Setting up r-cran-stringr (1.5.1-1) ...
376s Setting up r-cran-callr (3.7.3-2) ...
376s Setting up r-cran-desc (1.4.3-1) ...
376s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
376s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
376s Setting up r-cran-httr (1.4.7+dfsg-1) ...
376s Setting up r-cran-memoise (2.0.1-1) ...
376s Setting up r-cran-promises (1.2.1+dfsg-1) ...
376s Setting up r-cran-blob (1.2.4-1) ...
376s Setting up r-cran-htmltools (0.5.7-1) ...
376s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
376s Setting up r-bioc-xvector (0.42.0-1) ...
376s Setting up r-cran-pkgbuild (1.4.3-1) ...
376s Setting up r-cran-sass (0.4.8+dfsg-1) ...
376s Setting up r-cran-rsqlite (2.3.4-1) ...
376s Setting up r-cran-pkgload (1.3.4-1) ...
376s Setting up r-cran-httpuv (1.6.14+dfsg-1) ...
376s Setting up r-cran-rematch2 (2.1.2-2build1) ...
376s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ...
376s Setting up r-cran-fontawesome (0.5.2-1) ...
376s Setting up r-cran-yulab.utils (0.1.4-1) ...
376s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
376s Setting up r-cran-bslib (0.6.1+dfsg-1) ...
376s Setting up r-cran-waldo (0.5.2-1build1) ...
376s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ...
376s Setting up r-bioc-annotationdbi (1.64.1-1) ...
376s Setting up r-bioc-go.db (3.18.0-1) ...
376s Setting up r-cran-shiny (1.8.0+dfsg-1) ...
376s Setting up r-cran-testthat (3.2.1-1) ...
376s Setting up r-cran-rmarkdown (2.25+dfsg-3) ...
376s Setting up r-bioc-gosemsim (2.28.1-1) ...
376s Setting up r-bioc-rcpi (1.38.0+ds-1) ...
376s Processing triggers for man-db (2.12.0-3) ...
377s Processing triggers for install-info (7.1-3) ...
377s Processing triggers for libc-bin (2.39-0ubuntu2) ...
380s Reading package lists...
380s Building dependency tree...
380s Reading state information...
381s Starting pkgProblemResolver with broken count: 0
381s Starting 2 pkgProblemResolver with broken count: 0
381s Done
381s The following NEW packages will be installed:
381s   autopkgtest-satdep
381s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
381s Need to get 0 B/696 B of archives.
381s After this operation, 0 B of additional disk space will be used.
381s Get:1 /tmp/autopkgtest.ZIYqoR/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B]
382s Selecting previously unselected package autopkgtest-satdep.
382s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 93242 files and directories currently installed.)
382s Preparing to unpack .../2-autopkgtest-satdep.deb ...
382s Unpacking autopkgtest-satdep (0) ...
382s Setting up autopkgtest-satdep (0) ...
383s (Reading database ... 93242 files and directories currently installed.)
383s Removing autopkgtest-satdep (0) ...
384s autopkgtest [22:36:51]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
384s autopkgtest [22:36:51]: test pkg-r-autopkgtest: [-----------------------
384s Test: Try to load the R library Rcpi
384s 
384s R version 4.3.2 (2023-10-31) -- "Eye Holes"
384s Copyright (C) 2023 The R Foundation for Statistical Computing
384s Platform: x86_64-pc-linux-gnu (64-bit)
384s 
384s R is free software and comes with ABSOLUTELY NO WARRANTY.
384s You are welcome to redistribute it under certain conditions.
384s Type 'license()' or 'licence()' for distribution details.
384s 
384s R is a collaborative project with many contributors.
384s Type 'contributors()' for more information and
384s 'citation()' on how to cite R or R packages in publications.
384s 
384s Type 'demo()' for some demos, 'help()' for on-line help, or
384s 'help.start()' for an HTML browser interface to help.
384s Type 'q()' to quit R.
384s 
384s > library('Rcpi')
387s 
387s > 
387s > 
387s Other tests are currently unsupported!
387s They will be progressively added.
387s autopkgtest [22:36:54]: test pkg-r-autopkgtest: -----------------------]
388s autopkgtest [22:36:55]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
388s pkg-r-autopkgtest    PASS
388s autopkgtest [22:36:55]: @@@@@@@@@@@@@@@@@@@@ summary
388s pkg-r-autopkgtest    PASS
398s Creating nova instance adt-noble-i386-r-bioc-rcpi-20240319-223027-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240319.img (UUID 7b50f403-c8dd-4ed1-a25c-18c4799f5a5b)...