0s autopkgtest [03:56:03]: starting date and time: 2024-03-22 03:56:03+0000
  0s autopkgtest [03:56:03]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [03:56:03]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.oygcy8mm/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-qvalue --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-16.secgroup --name adt-noble-i386-r-bioc-qvalue-20240322-035602-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
413s autopkgtest [04:02:56]: testbed dpkg architecture: amd64
413s autopkgtest [04:02:56]: testbed apt version: 2.7.12
413s autopkgtest [04:02:56]: test architecture: i386
413s autopkgtest [04:02:56]: @@@@@@@@@@@@@@@@@@@@ test bed setup
413s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
413s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB]
413s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB]
413s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3757 kB]
413s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
413s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [696 kB]
413s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [460 kB]
413s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B]
413s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B]
413s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB]
413s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B]
413s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4267 kB]
413s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1277 kB]
413s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B]
413s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB]
413s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB]
413s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B]
417s Fetched 11.3 MB in 2s (7119 kB/s)
417s Reading package lists...
420s Reading package lists...
420s Building dependency tree...
420s Reading state information...
420s Calculating upgrade...
420s The following packages will be upgraded:
420s   cloud-init fonts-ubuntu-console python3-markupsafe
420s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
420s Need to get 629 kB of archives.
420s After this operation, 11.3 kB disk space will be freed.
420s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB]
420s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB]
420s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB]
420s Preconfiguring packages ...
420s Fetched 629 kB in 0s (14.0 MB/s)
420s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71865 files and directories currently installed.)
420s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ...
420s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ...
420s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ...
420s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ...
420s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ...
421s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ...
421s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ...
421s Setting up cloud-init (24.1.2-0ubuntu1) ...
422s Setting up python3-markupsafe (2.1.5-1build1) ...
422s Processing triggers for man-db (2.12.0-3) ...
423s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
425s Reading package lists...sh: Attempting to set up Debian/Ubuntu apt sources automatically
425s sh: Distribution appears to be Ubuntu
425s 
425s Building dependency tree...
425s Reading state information...
425s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
426s Reading package lists...
426s Building dependency tree...
426s Reading state information...
427s eatmydata is already the newest version (131-1).
427s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
427s Reading package lists...
427s Building dependency tree...
427s Reading state information...
427s dbus is already the newest version (1.14.10-4ubuntu1).
427s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
427s Reading package lists...
427s Building dependency tree...
427s Reading state information...
428s rng-tools-debian is already the newest version (2.4).
428s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
428s Reading package lists...
428s Building dependency tree...
428s Reading state information...
429s The following packages will be REMOVED:
429s   cloud-init* python3-configobj* python3-debconf*
429s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
429s After this operation, 3256 kB disk space will be freed.
429s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71864 files and directories currently installed.)
429s Removing cloud-init (24.1.2-0ubuntu1) ...
429s Removing python3-configobj (5.0.8-3) ...
430s Removing python3-debconf (1.5.86) ...
430s Processing triggers for man-db (2.12.0-3) ...
430s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71475 files and directories currently installed.)
430s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
431s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
431s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
431s invoke-rc.d: policy-rc.d denied execution of try-restart.
431s Reading package lists...
431s Building dependency tree...
431s Reading state information...
431s linux-generic is already the newest version (6.8.0-11.11+1).
431s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
432s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
432s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
432s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
434s Reading package lists...
434s Reading package lists...
434s Building dependency tree...
434s Reading state information...
435s Calculating upgrade...
435s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
435s Reading package lists...
435s Building dependency tree...
435s Reading state information...
435s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
435s autopkgtest [04:03:18]: rebooting testbed after setup commands that affected boot
478s autopkgtest [04:04:01]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024
479s autopkgtest [04:04:02]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-qvalue
480s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-qvalue 2.34.0-1 (dsc) [2122 B]
480s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-qvalue 2.34.0-1 (tar) [2768 kB]
480s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-qvalue 2.34.0-1 (diff) [5524 B]
480s gpgv: Signature made Wed Nov 29 16:53:04 2023 UTC
480s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
480s gpgv:                issuer "tille@debian.org"
480s gpgv: Can't check signature: No public key
480s dpkg-source: warning: cannot verify inline signature for ./r-bioc-qvalue_2.34.0-1.dsc: no acceptable signature found
480s autopkgtest [04:04:03]: testing package r-bioc-qvalue version 2.34.0-1
481s autopkgtest [04:04:04]: build not needed
482s autopkgtest [04:04:05]: test pkg-r-autopkgtest: preparing testbed
485s Note, using file '/tmp/autopkgtest.0r2hvU/1-autopkgtest-satdep.dsc' to get the build dependencies
486s Reading package lists...
486s Building dependency tree...
486s Reading state information...
486s Starting pkgProblemResolver with broken count: 0
486s Starting 2 pkgProblemResolver with broken count: 0
486s Done
487s The following NEW packages will be installed:
487s   build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu
487s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
487s   fonts-glyphicons-halflings fonts-mathjax g++ g++-13 g++-13-x86-64-linux-gnu
487s   g++-x86-64-linux-gnu gcc gcc-13 gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu
487s   gfortran gfortran-13 gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu
487s   icu-devtools libasan8 libatomic1 libblas-dev libblas3 libbz2-dev
487s   libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1
487s   libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5
487s   libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23
487s   libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
487s   libjpeg8-dev libjs-bootstrap libjs-highlight.js libjs-jquery
487s   libjs-jquery-datatables libjs-mathjax liblapack-dev liblapack3 liblerc4
487s   liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0
487s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0
487s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
487s   libpng-dev libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev
487s   libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2
487s   libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1
487s   libxt6 linux-libc-dev littler node-normalize.css pkg-config
487s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
487s   r-bioc-biocgenerics r-bioc-qvalue r-cran-cli r-cran-colorspace
487s   r-cran-evaluate r-cran-fansi r-cran-farver r-cran-ggplot2 r-cran-glue
487s   r-cran-gtable r-cran-highr r-cran-isoband r-cran-knitr r-cran-labeling
487s   r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass
487s   r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar
487s   r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer
487s   r-cran-rcpp r-cran-reshape2 r-cran-rlang r-cran-scales r-cran-stringi
487s   r-cran-stringr r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite
487s   r-cran-withr r-cran-xfun r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils
487s   zip zlib1g-dev
487s 0 upgraded, 157 newly installed, 0 to remove and 0 not upgraded.
487s Need to get 185 MB of archives.
487s After this operation, 569 MB of additional disk space will be used.
487s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB]
487s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB]
487s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB]
487s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB]
487s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB]
487s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB]
487s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB]
487s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB]
487s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB]
487s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB]
487s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B]
487s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
487s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
487s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB]
487s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB]
487s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB]
487s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB]
487s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB]
487s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB]
487s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB]
487s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB]
487s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB]
487s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB]
487s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB]
487s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB]
488s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB]
488s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
488s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
488s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB]
488s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB]
488s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB]
488s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
488s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
488s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
488s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB]
488s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
488s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
488s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB]
488s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB]
488s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB]
488s Get:41 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
488s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
488s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB]
488s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB]
488s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB]
488s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB]
488s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B]
488s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B]
488s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB]
488s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB]
488s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB]
488s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB]
488s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB]
488s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB]
488s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B]
488s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB]
488s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB]
488s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB]
488s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB]
488s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB]
488s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB]
488s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
488s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB]
488s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB]
488s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB]
488s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB]
488s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
488s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
488s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
488s Get:70 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
488s Get:71 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
488s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
488s Get:73 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
488s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB]
488s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB]
488s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB]
488s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB]
488s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB]
488s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB]
488s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB]
488s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB]
488s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB]
488s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB]
488s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B]
488s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB]
488s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB]
488s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B]
488s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB]
488s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB]
488s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB]
488s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB]
488s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB]
488s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB]
488s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB]
488s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB]
488s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB]
488s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB]
488s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB]
488s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB]
488s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B]
488s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB]
488s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB]
488s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB]
488s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB]
488s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
488s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB]
488s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB]
488s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B]
488s Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB]
488s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB]
488s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB]
488s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B]
488s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB]
488s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B]
488s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
488s Get:116 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
488s Get:117 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB]
488s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB]
488s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB]
488s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
488s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB]
488s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
488s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB]
488s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB]
488s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB]
488s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB]
489s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB]
489s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB]
489s Get:129 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
489s Get:130 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB]
489s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB]
489s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB]
489s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
489s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB]
489s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB]
489s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB]
489s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
489s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
489s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
489s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
489s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
489s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB]
489s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB]
489s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB]
489s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
489s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB]
489s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB]
489s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB]
489s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB]
489s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB]
489s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-qvalue all 2.34.0-1 [2803 kB]
489s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB]
489s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB]
489s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB]
489s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB]
489s Get:156 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
489s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB]
489s Preconfiguring packages ...
489s Fetched 185 MB in 2s (116 MB/s)
490s Selecting previously unselected package libc-dev-bin.
490s (Reading database ... 
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(Reading database ... 71420 files and directories currently installed.)
490s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ...
490s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
490s Selecting previously unselected package linux-libc-dev:amd64.
490s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ...
490s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ...
490s Selecting previously unselected package libcrypt-dev:amd64.
490s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ...
490s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ...
490s Selecting previously unselected package libtirpc-dev:amd64.
490s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ...
490s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
490s Selecting previously unselected package libnsl-dev:amd64.
490s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ...
490s Unpacking libnsl-dev:amd64 (1.3.0-3) ...
490s Selecting previously unselected package rpcsvc-proto.
490s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ...
490s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
490s Selecting previously unselected package libc6-dev:amd64.
490s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ...
490s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ...
490s Selecting previously unselected package libisl23:amd64.
490s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ...
490s Unpacking libisl23:amd64 (0.26-3) ...
490s Selecting previously unselected package libmpc3:amd64.
490s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ...
490s Unpacking libmpc3:amd64 (1.3.1-1) ...
490s Selecting previously unselected package cpp-13-x86-64-linux-gnu.
490s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
490s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
491s Selecting previously unselected package cpp-13.
491s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ...
491s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
491s Selecting previously unselected package cpp-x86-64-linux-gnu.
491s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
491s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
491s Selecting previously unselected package cpp.
491s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ...
491s Unpacking cpp (4:13.2.0-7ubuntu1) ...
491s Selecting previously unselected package libcc1-0:amd64.
491s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ...
491s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ...
491s Selecting previously unselected package libgomp1:amd64.
491s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ...
491s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ...
491s Selecting previously unselected package libitm1:amd64.
491s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ...
491s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ...
491s Selecting previously unselected package libatomic1:amd64.
491s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ...
491s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ...
491s Selecting previously unselected package libasan8:amd64.
491s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ...
491s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ...
491s Selecting previously unselected package liblsan0:amd64.
491s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ...
491s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ...
491s Selecting previously unselected package libtsan2:amd64.
491s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ...
491s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ...
491s Selecting previously unselected package libubsan1:amd64.
491s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ...
491s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ...
491s Selecting previously unselected package libhwasan0:amd64.
491s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ...
491s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ...
491s Selecting previously unselected package libquadmath0:amd64.
491s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ...
491s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ...
491s Selecting previously unselected package libgcc-13-dev:amd64.
491s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ...
491s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
491s Selecting previously unselected package gcc-13-x86-64-linux-gnu.
491s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
491s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
492s Selecting previously unselected package gcc-13.
492s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ...
492s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
492s Selecting previously unselected package gcc-x86-64-linux-gnu.
492s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
492s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
492s Selecting previously unselected package gcc.
492s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ...
492s Unpacking gcc (4:13.2.0-7ubuntu1) ...
492s Selecting previously unselected package libstdc++-13-dev:amd64.
492s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ...
492s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
492s Selecting previously unselected package g++-13-x86-64-linux-gnu.
492s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
492s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
492s Selecting previously unselected package g++-13.
492s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ...
492s Unpacking g++-13 (13.2.0-17ubuntu2) ...
492s Selecting previously unselected package g++-x86-64-linux-gnu.
492s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
492s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
492s Selecting previously unselected package g++.
492s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ...
492s Unpacking g++ (4:13.2.0-7ubuntu1) ...
492s Selecting previously unselected package build-essential.
493s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ...
493s Unpacking build-essential (12.10ubuntu1) ...
493s Selecting previously unselected package dctrl-tools.
493s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ...
493s Unpacking dctrl-tools (2.24-3build2) ...
493s Selecting previously unselected package fonts-dejavu-mono.
493s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ...
493s Unpacking fonts-dejavu-mono (2.37-8) ...
493s Selecting previously unselected package fonts-dejavu-core.
493s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ...
493s Unpacking fonts-dejavu-core (2.37-8) ...
493s Selecting previously unselected package fontconfig-config.
493s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ...
493s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
493s Selecting previously unselected package libfontconfig1:amd64.
493s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ...
493s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
493s Selecting previously unselected package fontconfig.
493s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ...
493s Unpacking fontconfig (2.15.0-1ubuntu1) ...
493s Selecting previously unselected package fonts-glyphicons-halflings.
493s Preparing to unpack .../040-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
493s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
493s Selecting previously unselected package fonts-mathjax.
493s Preparing to unpack .../041-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
493s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
493s Selecting previously unselected package libgfortran5:amd64.
493s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_amd64.deb ...
493s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ...
493s Selecting previously unselected package libgfortran-13-dev:amd64.
493s Preparing to unpack .../043-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ...
493s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ...
493s Selecting previously unselected package gfortran-13-x86-64-linux-gnu.
493s Preparing to unpack .../044-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
493s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
494s Selecting previously unselected package gfortran-13.
494s Preparing to unpack .../045-gfortran-13_13.2.0-17ubuntu2_amd64.deb ...
494s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
494s Selecting previously unselected package gfortran-x86-64-linux-gnu.
494s Preparing to unpack .../046-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
494s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
494s Selecting previously unselected package gfortran.
494s Preparing to unpack .../047-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ...
494s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
494s Selecting previously unselected package icu-devtools.
494s Preparing to unpack .../048-icu-devtools_74.2-1ubuntu1_amd64.deb ...
494s Unpacking icu-devtools (74.2-1ubuntu1) ...
494s Selecting previously unselected package libblas3:amd64.
494s Preparing to unpack .../049-libblas3_3.12.0-3_amd64.deb ...
494s Unpacking libblas3:amd64 (3.12.0-3) ...
494s Selecting previously unselected package libblas-dev:amd64.
494s Preparing to unpack .../050-libblas-dev_3.12.0-3_amd64.deb ...
494s Unpacking libblas-dev:amd64 (3.12.0-3) ...
494s Selecting previously unselected package libbz2-dev:amd64.
494s Preparing to unpack .../051-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ...
494s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ...
494s Selecting previously unselected package libpixman-1-0:amd64.
494s Preparing to unpack .../052-libpixman-1-0_0.42.2-1_amd64.deb ...
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500s Setting up libgraphite2-3:amd64 (1.3.14-2) ...
500s Setting up libpixman-1-0:amd64 (0.42.2-1) ...
500s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ...
500s Setting up libpaper1:amd64 (1.1.29) ...
500s 
500s Creating config file /etc/papersize with new version
500s Setting up fonts-mathjax (2.7.9+dfsg-1) ...
500s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ...
500s Setting up libjs-mathjax (2.7.9+dfsg-1) ...
500s Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
500s Setting up libdatrie1:amd64 (0.2.13-3) ...
500s Setting up libxcb-render0:amd64 (1.15-1) ...
500s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
500s Setting up unzip (6.0-28ubuntu3) ...
500s Setting up x11-common (1:7.7+23ubuntu2) ...
501s Setting up libdeflate0:amd64 (1.19-1) ...
501s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ...
501s Setting up libxcb-shm0:amd64 (1.15-1) ...
501s Setting up libpaper-utils (1.1.29) ...
501s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ...
501s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ...
501s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ...
501s Setting up zip (3.0-13) ...
501s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ...
501s Setting up libblas3:amd64 (3.12.0-3) ...
501s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
501s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
501s Setting up libpkgconf3:amd64 (1.8.1-2) ...
501s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
501s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ...
501s Setting up fonts-dejavu-mono (2.37-8) ...
501s Setting up libmpc3:amd64 (1.3.1-1) ...
501s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ...
501s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ...
501s Setting up icu-devtools (74.2-1ubuntu1) ...
501s Setting up fonts-dejavu-core (2.37-8) ...
501s Setting up pkgconf-bin (1.8.1-2) ...
501s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ...
501s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ...
501s Setting up libwebp7:amd64 (1.3.2-0.4) ...
501s Setting up liblzma-dev:amd64 (5.4.5-0.3) ...
501s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ...
501s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ...
501s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ...
501s Setting up libnsl-dev:amd64 (1.3.0-3) ...
501s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ...
501s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ...
501s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ...
501s Setting up libharfbuzz0b:amd64 (8.3.0-2) ...
501s Setting up libthai-data (0.1.29-2) ...
501s Setting up libxss1:amd64 (1:1.2.3-1build2) ...
501s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ...
501s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
501s Setting up libisl23:amd64 (0.26-3) ...
501s Setting up libc-dev-bin (2.39-0ubuntu2) ...
501s Setting up node-normalize.css (8.0.1-5) ...
501s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
501s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
501s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ...
501s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ...
501s Setting up libblas-dev:amd64 (3.12.0-3) ...
501s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
501s Setting up dctrl-tools (2.24-3build2) ...
501s Setting up libjs-bootstrap (3.4.1+dfsg-3) ...
501s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ...
501s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
501s Setting up libice6:amd64 (2:1.0.10-1build2) ...
501s Setting up liblapack3:amd64 (3.12.0-3) ...
501s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
501s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
501s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
501s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
501s Setting up pkgconf:amd64 (1.8.1-2) ...
501s Setting up libthai0:amd64 (0.1.29-2) ...
501s Setting up liblapack-dev:amd64 (3.12.0-3) ...
501s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
501s Setting up pkg-config:amd64 (1.8.1-2) ...
501s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
501s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ...
501s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ...
501s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
501s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ...
501s Setting up libsm6:amd64 (2:1.2.3-1build2) ...
501s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ...
501s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
501s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ...
501s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
501s Setting up fontconfig (2.15.0-1ubuntu1) ...
503s Regenerating fonts cache... done.
503s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ...
503s Setting up libxft2:amd64 (2.3.6-1) ...
503s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ...
503s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ...
503s Setting up cpp-13 (13.2.0-17ubuntu2) ...
503s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
503s Setting up libtk8.6:amd64 (8.6.13-2) ...
503s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ...
503s Setting up libreadline-dev:amd64 (8.2-3) ...
503s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
503s Setting up libcairo2:amd64 (1.18.0-1) ...
503s Setting up gcc-13 (13.2.0-17ubuntu2) ...
503s Setting up libxt6:amd64 (1:1.2.1-1.1) ...
503s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ...
503s Setting up cpp (4:13.2.0-7ubuntu1) ...
503s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ...
503s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ...
503s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ...
503s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
503s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
503s Setting up libpng-dev:amd64 (1.6.43-1) ...
503s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
503s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
503s Setting up gcc (4:13.2.0-7ubuntu1) ...
503s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
503s Setting up r-base-core (4.3.2-1build1) ...
503s 
503s Creating config file /etc/R/Renviron with new version
503s Setting up r-cran-labeling (0.4.3-1) ...
503s Setting up r-cran-lattice (0.22-5-1) ...
503s Setting up r-cran-nlme (3.1.164-1) ...
503s Setting up r-cran-farver (2.1.1-1) ...
503s Setting up r-cran-viridislite (0.4.2-2) ...
503s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
503s Setting up r-cran-r6 (2.5.1-1) ...
503s Setting up r-cran-pkgkitten (0.2.3-1) ...
503s Setting up r-cran-magrittr (2.0.3-1) ...
503s Setting up r-cran-littler (0.3.19-1) ...
503s Setting up r-cran-rcpp (1.0.12-1) ...
503s Setting up g++-13 (13.2.0-17ubuntu2) ...
503s Setting up r-bioc-biocgenerics (0.48.1-2) ...
503s Setting up r-cran-rlang (1.1.3-1) ...
503s Setting up littler (0.3.19-1) ...
503s Setting up r-cran-xfun (0.41+dfsg-1) ...
503s Setting up r-cran-withr (2.5.0-1) ...
503s Setting up r-cran-yaml (2.3.8-1) ...
503s Setting up r-cran-evaluate (0.23-1) ...
503s Setting up r-cran-highr (0.10+dfsg-1) ...
503s Setting up r-cran-fansi (1.0.5-1) ...
503s Setting up r-cran-mass (7.3-60.0.1-1) ...
503s Setting up r-cran-glue (1.7.0-1) ...
503s Setting up r-cran-cli (3.6.2-1) ...
503s Setting up gfortran (4:13.2.0-7ubuntu1) ...
503s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
503s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
503s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
503s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
503s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
503s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
503s Setting up r-cran-utf8 (1.2.4-1) ...
503s Setting up r-cran-colorspace (2.1-0+dfsg-1) ...
503s Setting up r-cran-stringi (1.8.3-1) ...
503s Setting up r-cran-plyr (1.8.9-1) ...
503s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
503s Setting up r-cran-isoband (0.2.7-1) ...
503s Setting up r-cran-gtable (0.3.4+dfsg-1) ...
503s Setting up r-cran-matrix (1.6-5-1) ...
503s Setting up r-cran-knitr (1.45+dfsg-1) ...
503s Setting up r-cran-mgcv (1.9-1-1) ...
503s Setting up g++ (4:13.2.0-7ubuntu1) ...
503s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
503s Setting up build-essential (12.10ubuntu1) ...
503s Setting up r-cran-vctrs (0.6.5-1) ...
503s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
503s Setting up r-base-dev (4.3.2-1build1) ...
503s Setting up r-cran-stringr (1.5.1-1) ...
503s Setting up r-cran-munsell (0.5.0-2build1) ...
503s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
503s Setting up r-cran-reshape2 (1.4.4-2build1) ...
503s Setting up r-cran-scales (1.3.0-1) ...
503s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
503s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ...
503s Setting up r-bioc-qvalue (2.34.0-1) ...
503s Processing triggers for libc-bin (2.39-0ubuntu2) ...
504s Processing triggers for man-db (2.12.0-3) ...
505s Processing triggers for install-info (7.1-3) ...
508s Reading package lists...
508s Building dependency tree...
508s Reading state information...
509s Starting pkgProblemResolver with broken count: 0
509s Starting 2 pkgProblemResolver with broken count: 0
509s Done
509s The following NEW packages will be installed:
509s   autopkgtest-satdep
509s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
509s Need to get 0 B/696 B of archives.
509s After this operation, 0 B of additional disk space will be used.
509s Get:1 /tmp/autopkgtest.0r2hvU/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B]
510s Selecting previously unselected package autopkgtest-satdep.
510s (Reading database ... 
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510s Preparing to unpack .../2-autopkgtest-satdep.deb ...
510s Unpacking autopkgtest-satdep (0) ...
510s Setting up autopkgtest-satdep (0) ...
512s (Reading database ... 86433 files and directories currently installed.)
512s Removing autopkgtest-satdep (0) ...
512s autopkgtest [04:04:35]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
512s autopkgtest [04:04:35]: test pkg-r-autopkgtest: [-----------------------
512s Test: Try to load the R library qvalue
512s 
512s R version 4.3.2 (2023-10-31) -- "Eye Holes"
512s Copyright (C) 2023 The R Foundation for Statistical Computing
512s Platform: x86_64-pc-linux-gnu (64-bit)
512s 
512s R is free software and comes with ABSOLUTELY NO WARRANTY.
512s You are welcome to redistribute it under certain conditions.
512s Type 'license()' or 'licence()' for distribution details.
512s 
512s R is a collaborative project with many contributors.
512s Type 'contributors()' for more information and
512s 'citation()' on how to cite R or R packages in publications.
512s 
512s Type 'demo()' for some demos, 'help()' for on-line help, or
512s 'help.start()' for an HTML browser interface to help.
512s Type 'q()' to quit R.
512s 
512s > library('qvalue')
513s > 
513s > 
513s Other tests are currently unsupported!
513s They will be progressively added.
513s autopkgtest [04:04:36]: test pkg-r-autopkgtest: -----------------------]
513s pkg-r-autopkgtest    PASS
513s autopkgtest [04:04:36]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
513s autopkgtest [04:04:36]: @@@@@@@@@@@@@@@@@@@@ summary
513s pkg-r-autopkgtest    PASS
547s Creating nova instance adt-noble-i386-r-bioc-qvalue-20240322-035602-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...