0s autopkgtest [03:45:56]: starting date and time: 2024-03-22 03:45:56+0000 0s autopkgtest [03:45:56]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [03:45:56]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qdtzwb85/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-purecn --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-59.secgroup --name adt-noble-i386-r-bioc-purecn-20240322-034556-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 864s autopkgtest [04:00:20]: testbed dpkg architecture: amd64 864s autopkgtest [04:00:20]: testbed apt version: 2.7.12 864s autopkgtest [04:00:20]: test architecture: i386 864s autopkgtest [04:00:20]: @@@@@@@@@@@@@@@@@@@@ test bed setup 864s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 865s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3757 kB] 865s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 865s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 865s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 865s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [460 kB] 865s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [696 kB] 865s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 865s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 865s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 865s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 865s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4267 kB] 865s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1277 kB] 865s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 865s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 865s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 865s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 868s Fetched 11.3 MB in 2s (6963 kB/s) 868s Reading package lists... 870s Reading package lists... 870s Building dependency tree... 870s Reading state information... 871s Calculating upgrade... 871s The following packages will be upgraded: 871s cloud-init fonts-ubuntu-console python3-markupsafe 871s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 871s Need to get 629 kB of archives. 871s After this operation, 11.3 kB disk space will be freed. 871s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 871s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 871s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 871s Preconfiguring packages ... 871s Fetched 629 kB in 0s (27.4 MB/s) 871s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 871s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 871s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 872s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 872s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 872s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 872s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 872s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 872s Setting up cloud-init (24.1.2-0ubuntu1) ... 873s Setting up python3-markupsafe (2.1.5-1build1) ... 873s Processing triggers for man-db (2.12.0-3) ... 874s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 875s Reading package lists... 876s Building dependency tree... 876s Reading state information... 876s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 877s sh: Attempting to set up Debian/Ubuntu apt sources automatically 877s sh: Distribution appears to be Ubuntu 877s Reading package lists... 878s Building dependency tree... 878s Reading state information... 878s eatmydata is already the newest version (131-1). 878s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 878s Reading package lists... 878s Building dependency tree... 878s Reading state information... 879s dbus is already the newest version (1.14.10-4ubuntu1). 879s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 879s Reading package lists... 879s Building dependency tree... 879s Reading state information... 879s rng-tools-debian is already the newest version (2.4). 879s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 879s Reading package lists... 880s Building dependency tree... 880s Reading state information... 880s The following packages will be REMOVED: 880s cloud-init* python3-configobj* python3-debconf* 880s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 880s After this operation, 3256 kB disk space will be freed. 880s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 880s Removing cloud-init (24.1.2-0ubuntu1) ... 881s Removing python3-configobj (5.0.8-3) ... 881s Removing python3-debconf (1.5.86) ... 881s Processing triggers for man-db (2.12.0-3) ... 881s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 881s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 882s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 882s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 882s invoke-rc.d: policy-rc.d denied execution of try-restart. 882s Reading package lists... 883s Building dependency tree... 883s Reading state information... 883s linux-generic is already the newest version (6.8.0-11.11+1). 883s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 883s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 883s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 883s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 886s Reading package lists... 886s Reading package lists... 886s Building dependency tree... 886s Reading state information... 887s Calculating upgrade... 887s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 887s Reading package lists... 887s Building dependency tree... 887s Reading state information... 888s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 888s autopkgtest [04:00:44]: rebooting testbed after setup commands that affected boot 921s autopkgtest [04:01:17]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 922s autopkgtest [04:01:18]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-purecn 923s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (dsc) [2494 B] 923s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (tar) [5486 kB] 923s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (diff) [6412 B] 923s gpgv: Signature made Fri Dec 1 10:51:26 2023 UTC 923s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 923s gpgv: issuer "tillea@rki.de" 923s gpgv: Can't check signature: No public key 923s dpkg-source: warning: cannot verify inline signature for ./r-bioc-purecn_2.8.1+dfsg-1.dsc: no acceptable signature found 923s autopkgtest [04:01:19]: testing package r-bioc-purecn version 2.8.1+dfsg-1 924s autopkgtest [04:01:20]: build not needed 925s autopkgtest [04:01:21]: test pkg-r-autopkgtest: preparing testbed 932s Note, using file '/tmp/autopkgtest.HX7M61/1-autopkgtest-satdep.dsc' to get the build dependencies 933s Reading package lists... 933s Building dependency tree... 933s Reading state information... 933s Starting pkgProblemResolver with broken count: 0 933s Starting 2 pkgProblemResolver with broken count: 0 933s Done 934s The following NEW packages will be installed: 934s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 934s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 934s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 934s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 934s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 934s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu hdf5-helpers 934s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 934s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 934s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 934s libcrypt-dev libcurl4-openssl-dev libdatrie1 libdeflate0 libfontconfig1 934s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 934s libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev 934s libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 934s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 934s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 934s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 934s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 934s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 934s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 934s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 934s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 934s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 934s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 934s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 934s libpotrace0 libptexenc1 libquadmath0 libreadline-dev libsharpyuv0 libsm6 934s libsnappy1v5 libssl-dev libstdc++-13-dev libsynctex2 libsz2 libtcl8.6 934s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 934s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 934s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 934s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 934s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 934s r-base-dev r-bioc-annotationdbi r-bioc-aroma.light r-bioc-biobase 934s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 934s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 934s r-bioc-delayedarray r-bioc-dnacopy r-bioc-genomeinfodb 934s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 934s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 934s r-bioc-org.hs.eg.db r-bioc-purecn r-bioc-rhdf5 r-bioc-rhdf5filters 934s r-bioc-rhdf5lib r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 934s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 934s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 934s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 934s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 934s r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 934s r-cran-cli r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-covr 934s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi 934s r-cran-dbplyr r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr 934s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap 934s r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 934s r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-generics 934s r-cran-getopt r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gridextra 934s r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv 934s r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr 934s r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval 934s r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-magrittr 934s r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mclust 934s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 934s r-cran-openssl r-cran-optparse r-cran-parallelly r-cran-pillar 934s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 934s r-cran-plogr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx 934s r-cran-progress r-cran-promises r-cran-ps r-cran-pscbs r-cran-purrr 934s r-cran-r.cache r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 934s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rematch2 934s r-cran-restfulr r-cran-rex r-cran-rjson r-cran-rlang r-cran-rmarkdown 934s r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-scales r-cran-shiny 934s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys 934s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 934s r-cran-utf8 r-cran-vctrs r-cran-vgam r-cran-viridislite r-cran-waldo 934s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 934s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 934s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 934s zlib1g-dev 934s 0 upgraded, 343 newly installed, 0 to remove and 0 not upgraded. 934s Need to get 557 MB of archives. 934s After this operation, 1850 MB of additional disk space will be used. 934s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 934s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 934s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 934s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 934s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 934s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 934s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 934s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 934s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 934s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 934s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 934s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 934s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 934s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 934s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 934s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 934s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 934s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 934s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 934s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 934s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 934s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 934s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 934s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 934s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 934s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 934s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 934s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 934s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 934s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 934s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 934s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 934s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 934s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 934s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 934s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 934s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 934s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 934s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 934s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 934s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 934s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 934s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 934s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 934s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 934s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 934s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 935s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 935s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 935s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 935s Get:51 http://ftpmaster.internal/ubuntu noble/universe amd64 hdf5-helpers amd64 1.10.10+repack-3ubuntu1 [15.5 kB] 935s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 935s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 935s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 935s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 935s Get:56 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 935s Get:57 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 935s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 935s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 935s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libsnappy1v5 amd64 1.1.10-1 [28.4 kB] 935s Get:61 http://ftpmaster.internal/ubuntu noble/universe amd64 libblosc1 amd64 1.21.5+ds-1 [36.5 kB] 935s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 935s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 935s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 935s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 935s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 935s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 935s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 935s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 935s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libcurl4-openssl-dev amd64 8.5.0-2ubuntu2 [446 kB] 935s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 935s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 935s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 935s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 935s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 935s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 935s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-cpp-103-1 amd64 1.10.10+repack-3ubuntu1 [128 kB] 935s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-fortran-102 amd64 1.10.10+repack-3ubuntu1 [86.4 kB] 935s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB] 935s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-fortran-100 amd64 1.10.10+repack-3ubuntu1 [32.5 kB] 935s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-cpp-100 amd64 1.10.10+repack-3ubuntu1 [11.0 kB] 935s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 935s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 935s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 935s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 935s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 935s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 935s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec-dev amd64 1.1.2-1 [19.5 kB] 935s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libssl-dev amd64 3.0.10-1ubuntu4 [2400 kB] 935s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-dev amd64 1.10.10+repack-3ubuntu1 [2826 kB] 935s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 935s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 935s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 935s Get:94 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 935s Get:95 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 935s Get:96 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 935s Get:97 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 935s Get:98 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 935s Get:99 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 935s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 935s Get:101 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 935s Get:102 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 935s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 935s Get:104 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 935s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 935s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 935s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 935s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 935s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 935s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 935s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 935s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 935s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 935s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 935s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 935s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 935s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 935s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 935s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 935s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 935s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 935s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 935s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 935s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 935s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 935s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 935s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 935s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 935s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 935s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 935s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 935s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 935s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 935s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 935s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 935s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 935s Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 935s Get:138 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 935s Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 935s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 935s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 935s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 935s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 935s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 935s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 935s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 935s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 935s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 935s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 935s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 935s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 935s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 935s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 935s Get:154 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 935s Get:155 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 935s Get:156 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 935s Get:157 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 935s Get:158 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 935s Get:159 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 935s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 935s Get:161 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 935s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 935s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 935s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 935s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 935s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 935s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 935s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 935s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 935s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 935s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 935s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 935s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 935s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 935s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 935s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 935s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 935s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 935s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 935s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 935s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 935s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 935s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 936s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 936s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 936s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 936s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 936s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 936s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 936s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 936s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 936s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 936s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 936s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 936s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 936s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 936s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 936s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 936s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 936s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 936s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 936s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 936s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 936s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.oo all 1.26.0-1 [955 kB] 936s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.utils all 2.12.3-1 [1386 kB] 936s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 936s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-aroma.light all 3.32.0-1 [576 kB] 936s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 936s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 936s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 936s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 936s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 936s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 936s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 936s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 936s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 936s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 936s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 936s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 936s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 936s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 936s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 936s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 936s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 936s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 936s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 936s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 936s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 936s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 936s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 936s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 936s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 936s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 936s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 936s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 936s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 936s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 936s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 936s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 936s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 936s Get:241 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 936s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 936s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 936s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 936s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 936s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 936s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 936s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 936s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 936s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 936s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 936s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 936s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 936s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 936s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 936s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 936s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 936s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 936s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 936s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 936s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 936s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 936s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 936s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 936s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 936s Get:266 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 936s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 936s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 937s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 937s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 937s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 937s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 937s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 937s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 937s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 937s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 937s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 937s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 937s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 937s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 937s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 937s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 937s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 937s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 937s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 937s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 938s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 938s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 938s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 938s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 938s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 938s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 938s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 938s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-dnacopy amd64 1.76.0-1 [380 kB] 938s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 938s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB] 938s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-variantannotation amd64 1.48.1-1 [3527 kB] 938s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 938s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-data.table amd64 1.14.10+dfsg-1 [1837 kB] 938s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 938s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 938s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 938s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 938s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 939s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 939s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 939s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 939s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 939s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 939s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 939s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 939s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 939s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vgam amd64 1.1-9-1 [7312 kB] 939s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mclust amd64 6.0.1-1 [3913 kB] 939s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5lib amd64 1.24.2+dfsg-1 [96.2 kB] 939s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5filters amd64 1.14.1+dfsg-3 [136 kB] 939s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5 amd64 2.46.1+dfsg-1 [808 kB] 939s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-purecn all 2.8.1+dfsg-1 [6042 kB] 939s Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 939s Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 939s Get:321 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 939s Get:322 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 939s Get:323 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 939s Get:324 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rex all 1.2.1-1 [129 kB] 939s Get:325 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 939s Get:326 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 939s Get:327 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 939s Get:328 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-globals all 0.16.2-1 [117 kB] 939s Get:329 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 939s Get:330 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-parallelly amd64 1.37.1-1 [365 kB] 939s Get:331 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 939s Get:332 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-getopt all 1.20.4-1 [38.4 kB] 939s Get:333 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-markdown all 1.12+dfsg-1 [179 kB] 939s Get:334 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-optparse all 1.7.4-1 [81.6 kB] 939s Get:335 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 939s Get:336 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 939s Get:337 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 939s Get:338 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 939s Get:339 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.cache all 0.16.0-1 [113 kB] 939s Get:340 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pscbs all 0.66.0-2 [4345 kB] 939s Get:341 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 939s Get:342 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 939s Get:343 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 940s Preconfiguring packages ... 940s Fetched 557 MB in 5s (105 MB/s) 940s Selecting previously unselected package libc-dev-bin. 940s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 940s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 940s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 940s Selecting previously unselected package linux-libc-dev:amd64. 940s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 940s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 940s Selecting previously unselected package libcrypt-dev:amd64. 940s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 940s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 940s Selecting previously unselected package libtirpc-dev:amd64. 940s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 940s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 941s Selecting previously unselected package libnsl-dev:amd64. 941s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 941s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 941s Selecting previously unselected package rpcsvc-proto. 941s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 941s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 941s Selecting previously unselected package libc6-dev:amd64. 941s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 941s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 941s Selecting previously unselected package libisl23:amd64. 941s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 941s Unpacking libisl23:amd64 (0.26-3) ... 941s Selecting previously unselected package libmpc3:amd64. 941s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 941s Unpacking libmpc3:amd64 (1.3.1-1) ... 941s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 941s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 941s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 941s Selecting previously unselected package cpp-13. 941s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 941s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 941s Selecting previously unselected package cpp-x86-64-linux-gnu. 941s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 941s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 941s Selecting previously unselected package cpp. 941s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 941s Unpacking cpp (4:13.2.0-7ubuntu1) ... 941s Selecting previously unselected package libcc1-0:amd64. 941s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 941s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 941s Selecting previously unselected package libgomp1:amd64. 941s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 941s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 941s Selecting previously unselected package libitm1:amd64. 941s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 941s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 941s Selecting previously unselected package libatomic1:amd64. 941s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 941s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 941s Selecting previously unselected package libasan8:amd64. 941s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 941s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 941s Selecting previously unselected package liblsan0:amd64. 941s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 941s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 941s Selecting previously unselected package libtsan2:amd64. 941s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 941s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 941s Selecting previously unselected package libubsan1:amd64. 941s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 941s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 941s Selecting previously unselected package libhwasan0:amd64. 941s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 941s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 942s Selecting previously unselected package libquadmath0:amd64. 942s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 942s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 942s Selecting previously unselected package libgcc-13-dev:amd64. 942s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 942s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 942s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 942s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 942s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 942s Selecting previously unselected package gcc-13. 942s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 942s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 942s Selecting previously unselected package gcc-x86-64-linux-gnu. 942s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 942s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 942s Selecting previously unselected package gcc. 942s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 942s Unpacking gcc (4:13.2.0-7ubuntu1) ... 942s Selecting previously unselected package libstdc++-13-dev:amd64. 942s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 942s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 942s Selecting previously unselected package g++-13-x86-64-linux-gnu. 942s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 942s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 942s Selecting previously unselected package g++-13. 942s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 942s Unpacking g++-13 (13.2.0-17ubuntu2) ... 943s Selecting previously unselected package g++-x86-64-linux-gnu. 943s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 943s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 943s Selecting previously unselected package g++. 943s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 943s Unpacking g++ (4:13.2.0-7ubuntu1) ... 943s Selecting previously unselected package build-essential. 943s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 943s Unpacking build-essential (12.10ubuntu1) ... 943s Selecting previously unselected package dctrl-tools. 943s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 943s Unpacking dctrl-tools (2.24-3build2) ... 943s Selecting previously unselected package fonts-dejavu-mono. 943s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 943s Unpacking fonts-dejavu-mono (2.37-8) ... 943s Selecting previously unselected package fonts-dejavu-core. 943s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 943s Unpacking fonts-dejavu-core (2.37-8) ... 943s Selecting previously unselected package fontconfig-config. 943s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 943s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 943s Selecting previously unselected package libfontconfig1:amd64. 943s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 943s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 943s Selecting previously unselected package fontconfig. 943s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 943s Unpacking fontconfig (2.15.0-1ubuntu1) ... 943s Selecting previously unselected package fonts-font-awesome. 943s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 943s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 943s Selecting previously unselected package fonts-glyphicons-halflings. 943s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 943s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 943s Selecting previously unselected package fonts-lmodern. 943s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 943s Unpacking fonts-lmodern (2.005-1) ... 943s Selecting previously unselected package fonts-mathjax. 943s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 943s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 943s Selecting previously unselected package libgfortran5:amd64. 943s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 943s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 943s Selecting previously unselected package libgfortran-13-dev:amd64. 943s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 943s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 944s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 944s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 944s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 944s Selecting previously unselected package gfortran-13. 944s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 944s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 944s Selecting previously unselected package gfortran-x86-64-linux-gnu. 944s Preparing to unpack .../048-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 944s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 944s Selecting previously unselected package gfortran. 944s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 944s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 944s Selecting previously unselected package hdf5-helpers. 944s Preparing to unpack .../050-hdf5-helpers_1.10.10+repack-3ubuntu1_amd64.deb ... 944s Unpacking hdf5-helpers (1.10.10+repack-3ubuntu1) ... 944s Selecting previously unselected package icu-devtools. 944s Preparing to unpack .../051-icu-devtools_74.2-1ubuntu1_amd64.deb ... 944s Unpacking icu-devtools (74.2-1ubuntu1) ... 944s Selecting previously unselected package javascript-common. 944s Preparing to unpack .../052-javascript-common_11+nmu1_all.deb ... 944s Unpacking javascript-common (11+nmu1) ... 944s Selecting previously unselected package libaec0:amd64. 944s Preparing to unpack .../053-libaec0_1.1.2-1_amd64.deb ... 944s Unpacking libaec0:amd64 (1.1.2-1) ... 944s Selecting previously unselected package libio-string-perl. 944s Preparing to unpack .../054-libio-string-perl_1.08-4_all.deb ... 944s Unpacking libio-string-perl (1.08-4) ... 944s Selecting previously unselected package liblatex-tounicode-perl. 944s Preparing to unpack .../055-liblatex-tounicode-perl_0.54-2_all.deb ... 944s Unpacking liblatex-tounicode-perl (0.54-2) ... 944s Selecting previously unselected package libbibtex-parser-perl. 944s Preparing to unpack .../056-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 944s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 944s Selecting previously unselected package libblas3:amd64. 944s Preparing to unpack .../057-libblas3_3.12.0-3_amd64.deb ... 944s Unpacking libblas3:amd64 (3.12.0-3) ... 944s Selecting previously unselected package libblas-dev:amd64. 944s Preparing to unpack .../058-libblas-dev_3.12.0-3_amd64.deb ... 944s Unpacking libblas-dev:amd64 (3.12.0-3) ... 944s Selecting previously unselected package libsnappy1v5:amd64. 944s Preparing to unpack .../059-libsnappy1v5_1.1.10-1_amd64.deb ... 944s Unpacking libsnappy1v5:amd64 (1.1.10-1) ... 944s Selecting previously unselected package libblosc1:amd64. 944s Preparing to unpack .../060-libblosc1_1.21.5+ds-1_amd64.deb ... 944s Unpacking libblosc1:amd64 (1.21.5+ds-1) ... 944s Selecting previously unselected package libboost1.83-dev:amd64. 944s Preparing to unpack .../061-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 944s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 947s Selecting previously unselected package libboost-dev:amd64. 947s Preparing to unpack .../062-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 947s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ... 947s Selecting previously unselected package libbz2-dev:amd64. 947s Preparing to unpack .../063-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 947s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 947s Selecting previously unselected package libpixman-1-0:amd64. 947s Preparing to unpack .../064-libpixman-1-0_0.42.2-1_amd64.deb ... 947s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 947s Selecting previously unselected package libxcb-render0:amd64. 947s Preparing to unpack .../065-libxcb-render0_1.15-1_amd64.deb ... 947s Unpacking libxcb-render0:amd64 (1.15-1) ... 947s Selecting previously unselected package libxcb-shm0:amd64. 947s Preparing to unpack .../066-libxcb-shm0_1.15-1_amd64.deb ... 947s Unpacking libxcb-shm0:amd64 (1.15-1) ... 947s Selecting previously unselected package libxrender1:amd64. 947s Preparing to unpack .../067-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 947s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 947s Selecting previously unselected package libcairo2:amd64. 947s Preparing to unpack .../068-libcairo2_1.18.0-1_amd64.deb ... 947s Unpacking libcairo2:amd64 (1.18.0-1) ... 947s Selecting previously unselected package libcurl4-openssl-dev:amd64. 947s Preparing to unpack .../069-libcurl4-openssl-dev_8.5.0-2ubuntu2_amd64.deb ... 947s Unpacking libcurl4-openssl-dev:amd64 (8.5.0-2ubuntu2) ... 947s Selecting previously unselected package libdatrie1:amd64. 947s Preparing to unpack .../070-libdatrie1_0.2.13-3_amd64.deb ... 947s Unpacking libdatrie1:amd64 (0.2.13-3) ... 947s Selecting previously unselected package libdeflate0:amd64. 947s Preparing to unpack .../071-libdeflate0_1.19-1_amd64.deb ... 947s Unpacking libdeflate0:amd64 (1.19-1) ... 947s Selecting previously unselected package libgraphite2-3:amd64. 947s Preparing to unpack .../072-libgraphite2-3_1.3.14-2_amd64.deb ... 947s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 947s Selecting previously unselected package libharfbuzz0b:amd64. 947s Preparing to unpack .../073-libharfbuzz0b_8.3.0-2_amd64.deb ... 947s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 947s Selecting previously unselected package libsz2:amd64. 947s Preparing to unpack .../074-libsz2_1.1.2-1_amd64.deb ... 947s Unpacking libsz2:amd64 (1.1.2-1) ... 947s Selecting previously unselected package libhdf5-103-1:amd64. 947s Preparing to unpack .../075-libhdf5-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 947s Unpacking libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 947s Selecting previously unselected package libhdf5-cpp-103-1:amd64. 947s Preparing to unpack .../076-libhdf5-cpp-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 947s Unpacking libhdf5-cpp-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 947s Selecting previously unselected package libhdf5-fortran-102:amd64. 947s Preparing to unpack .../077-libhdf5-fortran-102_1.10.10+repack-3ubuntu1_amd64.deb ... 947s Unpacking libhdf5-fortran-102:amd64 (1.10.10+repack-3ubuntu1) ... 947s Selecting previously unselected package libhdf5-hl-100:amd64. 947s Preparing to unpack .../078-libhdf5-hl-100_1.10.10+repack-3ubuntu1_amd64.deb ... 947s Unpacking libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 947s Selecting previously unselected package libhdf5-hl-fortran-100:amd64. 947s Preparing to unpack .../079-libhdf5-hl-fortran-100_1.10.10+repack-3ubuntu1_amd64.deb ... 947s Unpacking libhdf5-hl-fortran-100:amd64 (1.10.10+repack-3ubuntu1) ... 947s Selecting previously unselected package libhdf5-hl-cpp-100:amd64. 947s Preparing to unpack .../080-libhdf5-hl-cpp-100_1.10.10+repack-3ubuntu1_amd64.deb ... 947s Unpacking libhdf5-hl-cpp-100:amd64 (1.10.10+repack-3ubuntu1) ... 947s Selecting previously unselected package zlib1g-dev:amd64. 947s Preparing to unpack .../081-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 947s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 947s Selecting previously unselected package libjpeg-turbo8:amd64. 947s Preparing to unpack .../082-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 947s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 947s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 947s Preparing to unpack .../083-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 947s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 947s Selecting previously unselected package libjpeg8:amd64. 947s Preparing to unpack .../084-libjpeg8_8c-2ubuntu11_amd64.deb ... 947s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 947s Selecting previously unselected package libjpeg8-dev:amd64. 947s Preparing to unpack .../085-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 947s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 947s Selecting previously unselected package libjpeg-dev:amd64. 947s Preparing to unpack .../086-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 947s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 948s Selecting previously unselected package libaec-dev:amd64. 948s Preparing to unpack .../087-libaec-dev_1.1.2-1_amd64.deb ... 948s Unpacking libaec-dev:amd64 (1.1.2-1) ... 948s Selecting previously unselected package libssl-dev:amd64. 948s Preparing to unpack .../088-libssl-dev_3.0.10-1ubuntu4_amd64.deb ... 948s Unpacking libssl-dev:amd64 (3.0.10-1ubuntu4) ... 948s Selecting previously unselected package libhdf5-dev. 948s Preparing to unpack .../089-libhdf5-dev_1.10.10+repack-3ubuntu1_amd64.deb ... 948s Unpacking libhdf5-dev (1.10.10+repack-3ubuntu1) ... 948s Selecting previously unselected package x11-common. 948s Preparing to unpack .../090-x11-common_1%3a7.7+23ubuntu2_all.deb ... 948s Unpacking x11-common (1:7.7+23ubuntu2) ... 948s Selecting previously unselected package libice6:amd64. 948s Preparing to unpack .../091-libice6_2%3a1.0.10-1build2_amd64.deb ... 948s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 948s Selecting previously unselected package libicu-dev:amd64. 948s Preparing to unpack .../092-libicu-dev_74.2-1ubuntu1_amd64.deb ... 948s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 948s Selecting previously unselected package libjs-bootstrap. 948s Preparing to unpack .../093-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 948s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 948s Selecting previously unselected package libjs-popper.js. 948s Preparing to unpack .../094-libjs-popper.js_1.16.1+ds-6_all.deb ... 948s Unpacking libjs-popper.js (1.16.1+ds-6) ... 948s Selecting previously unselected package libjs-bootstrap4. 948s Preparing to unpack .../095-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 948s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 948s Selecting previously unselected package libjs-d3. 948s Preparing to unpack .../096-libjs-d3_3.5.17-4_all.deb ... 948s Unpacking libjs-d3 (3.5.17-4) ... 948s Selecting previously unselected package libjs-es5-shim. 948s Preparing to unpack .../097-libjs-es5-shim_4.6.7-2_all.deb ... 948s Unpacking libjs-es5-shim (4.6.7-2) ... 948s Selecting previously unselected package libjs-highlight.js. 948s Preparing to unpack .../098-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 948s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 948s Selecting previously unselected package libjs-jquery. 948s Preparing to unpack .../099-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 948s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 948s Selecting previously unselected package libjs-jquery-datatables. 948s Preparing to unpack .../100-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 948s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 948s Selecting previously unselected package libjs-sifter.js. 948s Preparing to unpack .../101-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 948s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 948s Selecting previously unselected package libjs-microplugin.js. 948s Preparing to unpack .../102-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 948s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 948s Selecting previously unselected package libjs-jquery-selectize.js. 948s Preparing to unpack .../103-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 948s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 949s Selecting previously unselected package libjs-jquery-ui. 949s Preparing to unpack .../104-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 949s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 949s Selecting previously unselected package libjs-json. 949s Preparing to unpack .../105-libjs-json_0~20221030+~1.0.8-1_all.deb ... 949s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 949s Selecting previously unselected package libjs-lunr. 949s Preparing to unpack .../106-libjs-lunr_2.3.9~dfsg-2_all.deb ... 949s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 949s Selecting previously unselected package libjs-prettify. 949s Preparing to unpack .../107-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 949s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 949s Selecting previously unselected package libkpathsea6:amd64. 949s Preparing to unpack .../108-libkpathsea6_2023.20230311.66589-9_amd64.deb ... 949s Unpacking libkpathsea6:amd64 (2023.20230311.66589-9) ... 949s Selecting previously unselected package liblapack3:amd64. 949s Preparing to unpack .../109-liblapack3_3.12.0-3_amd64.deb ... 949s Unpacking liblapack3:amd64 (3.12.0-3) ... 949s Selecting previously unselected package liblapack-dev:amd64. 949s Preparing to unpack .../110-liblapack-dev_3.12.0-3_amd64.deb ... 949s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 949s Selecting previously unselected package liblerc4:amd64. 949s Preparing to unpack .../111-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 949s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 949s Selecting previously unselected package liblua5.4-0:amd64. 949s Preparing to unpack .../112-liblua5.4-0_5.4.6-3_amd64.deb ... 949s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 949s Selecting previously unselected package libncurses-dev:amd64. 949s Preparing to unpack .../113-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 949s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 949s Selecting previously unselected package libthai-data. 949s Preparing to unpack .../114-libthai-data_0.1.29-2_all.deb ... 949s Unpacking libthai-data (0.1.29-2) ... 949s Selecting previously unselected package libthai0:amd64. 949s Preparing to unpack .../115-libthai0_0.1.29-2_amd64.deb ... 949s Unpacking libthai0:amd64 (0.1.29-2) ... 949s Selecting previously unselected package libpango-1.0-0:amd64. 949s Preparing to unpack .../116-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 949s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 949s Selecting previously unselected package libpangoft2-1.0-0:amd64. 949s Preparing to unpack .../117-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 949s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 949s Selecting previously unselected package libpangocairo-1.0-0:amd64. 949s Preparing to unpack .../118-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 949s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 949s Selecting previously unselected package libpaper1:amd64. 949s Preparing to unpack .../119-libpaper1_1.1.29_amd64.deb ... 949s Unpacking libpaper1:amd64 (1.1.29) ... 949s Selecting previously unselected package libpaper-utils. 949s Preparing to unpack .../120-libpaper-utils_1.1.29_amd64.deb ... 949s Unpacking libpaper-utils (1.1.29) ... 949s Selecting previously unselected package libpcre2-16-0:amd64. 949s Preparing to unpack .../121-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 949s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 949s Selecting previously unselected package libpcre2-32-0:amd64. 949s Preparing to unpack .../122-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 949s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 949s Selecting previously unselected package libpcre2-posix3:amd64. 949s Preparing to unpack .../123-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 949s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 949s Selecting previously unselected package libpcre2-dev:amd64. 949s Preparing to unpack .../124-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 949s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 949s Selecting previously unselected package libpkgconf3:amd64. 949s Preparing to unpack .../125-libpkgconf3_1.8.1-2_amd64.deb ... 949s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 949s Selecting previously unselected package libpng-dev:amd64. 949s Preparing to unpack .../126-libpng-dev_1.6.43-1_amd64.deb ... 949s Unpacking libpng-dev:amd64 (1.6.43-1) ... 949s Selecting previously unselected package libpotrace0:amd64. 950s Preparing to unpack .../127-libpotrace0_1.16-2_amd64.deb ... 950s Unpacking libpotrace0:amd64 (1.16-2) ... 950s Selecting previously unselected package libptexenc1:amd64. 950s Preparing to unpack .../128-libptexenc1_2023.20230311.66589-9_amd64.deb ... 950s Unpacking libptexenc1:amd64 (2023.20230311.66589-9) ... 950s Selecting previously unselected package libreadline-dev:amd64. 950s Preparing to unpack .../129-libreadline-dev_8.2-3_amd64.deb ... 950s Unpacking libreadline-dev:amd64 (8.2-3) ... 950s Selecting previously unselected package libsharpyuv0:amd64. 950s Preparing to unpack .../130-libsharpyuv0_1.3.2-0.4_amd64.deb ... 950s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 950s Selecting previously unselected package libsm6:amd64. 950s Preparing to unpack .../131-libsm6_2%3a1.2.3-1build2_amd64.deb ... 950s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 950s Selecting previously unselected package libsynctex2:amd64. 950s Preparing to unpack .../132-libsynctex2_2023.20230311.66589-9_amd64.deb ... 950s Unpacking libsynctex2:amd64 (2023.20230311.66589-9) ... 950s Selecting previously unselected package libtcl8.6:amd64. 950s Preparing to unpack .../133-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 950s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 950s Selecting previously unselected package libteckit0:amd64. 950s Preparing to unpack .../134-libteckit0_2.5.12+ds1-1_amd64.deb ... 950s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 950s Selecting previously unselected package libtexlua53-5:amd64. 950s Preparing to unpack .../135-libtexlua53-5_2023.20230311.66589-9_amd64.deb ... 950s Unpacking libtexlua53-5:amd64 (2023.20230311.66589-9) ... 950s Selecting previously unselected package libjbig0:amd64. 950s Preparing to unpack .../136-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 950s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 950s Selecting previously unselected package libwebp7:amd64. 950s Preparing to unpack .../137-libwebp7_1.3.2-0.4_amd64.deb ... 950s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 950s Selecting previously unselected package libtiff6:amd64. 950s Preparing to unpack .../138-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 950s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 950s Selecting previously unselected package libxft2:amd64. 950s Preparing to unpack .../139-libxft2_2.3.6-1_amd64.deb ... 950s Unpacking libxft2:amd64 (2.3.6-1) ... 950s Selecting previously unselected package libxss1:amd64. 950s Preparing to unpack .../140-libxss1_1%3a1.2.3-1build2_amd64.deb ... 950s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 950s Selecting previously unselected package libtk8.6:amd64. 950s Preparing to unpack .../141-libtk8.6_8.6.13-2_amd64.deb ... 950s Unpacking libtk8.6:amd64 (8.6.13-2) ... 950s Selecting previously unselected package libxt6:amd64. 950s Preparing to unpack .../142-libxt6_1%3a1.2.1-1.1_amd64.deb ... 950s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 950s Selecting previously unselected package libxmu6:amd64. 950s Preparing to unpack .../143-libxmu6_2%3a1.1.3-3_amd64.deb ... 950s Unpacking libxmu6:amd64 (2:1.1.3-3) ... 950s Selecting previously unselected package libxpm4:amd64. 950s Preparing to unpack .../144-libxpm4_1%3a3.5.17-1_amd64.deb ... 950s Unpacking libxpm4:amd64 (1:3.5.17-1) ... 950s Selecting previously unselected package libxaw7:amd64. 950s Preparing to unpack .../145-libxaw7_2%3a1.0.14-1_amd64.deb ... 950s Unpacking libxaw7:amd64 (2:1.0.14-1) ... 950s Selecting previously unselected package libxi6:amd64. 950s Preparing to unpack .../146-libxi6_2%3a1.8.1-1_amd64.deb ... 950s Unpacking libxi6:amd64 (2:1.8.1-1) ... 950s Selecting previously unselected package libzzip-0-13:amd64. 950s Preparing to unpack .../147-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... 950s Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 950s Selecting previously unselected package node-bootstrap-sass. 950s Preparing to unpack .../148-node-bootstrap-sass_3.4.3-2_all.deb ... 950s Unpacking node-bootstrap-sass (3.4.3-2) ... 950s Selecting previously unselected package node-html5shiv. 950s Preparing to unpack .../149-node-html5shiv_3.7.3+dfsg-5_all.deb ... 950s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 950s Selecting previously unselected package node-normalize.css. 950s Preparing to unpack .../150-node-normalize.css_8.0.1-5_all.deb ... 950s Unpacking node-normalize.css (8.0.1-5) ... 950s Selecting previously unselected package pandoc-data. 950s Preparing to unpack .../151-pandoc-data_3.1.3-1_all.deb ... 950s Unpacking pandoc-data (3.1.3-1) ... 950s Selecting previously unselected package pandoc. 950s Preparing to unpack .../152-pandoc_3.1.3+ds-2_amd64.deb ... 950s Unpacking pandoc (3.1.3+ds-2) ... 951s Selecting previously unselected package pkgconf-bin. 951s Preparing to unpack .../153-pkgconf-bin_1.8.1-2_amd64.deb ... 951s Unpacking pkgconf-bin (1.8.1-2) ... 951s Selecting previously unselected package pkgconf:amd64. 951s Preparing to unpack .../154-pkgconf_1.8.1-2_amd64.deb ... 952s Unpacking pkgconf:amd64 (1.8.1-2) ... 952s Selecting previously unselected package pkg-config:amd64. 952s Preparing to unpack .../155-pkg-config_1.8.1-2_amd64.deb ... 952s Unpacking pkg-config:amd64 (1.8.1-2) ... 952s Selecting previously unselected package zip. 952s Preparing to unpack .../156-zip_3.0-13_amd64.deb ... 952s Unpacking zip (3.0-13) ... 952s Selecting previously unselected package unzip. 952s Preparing to unpack .../157-unzip_6.0-28ubuntu3_amd64.deb ... 952s Unpacking unzip (6.0-28ubuntu3) ... 952s Selecting previously unselected package xdg-utils. 952s Preparing to unpack .../158-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 952s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 952s Selecting previously unselected package r-base-core. 952s Preparing to unpack .../159-r-base-core_4.3.2-1build1_amd64.deb ... 952s Unpacking r-base-core (4.3.2-1build1) ... 952s Selecting previously unselected package liblzma-dev:amd64. 952s Preparing to unpack .../160-liblzma-dev_5.4.5-0.3_amd64.deb ... 952s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 952s Selecting previously unselected package r-base-dev. 952s Preparing to unpack .../161-r-base-dev_4.3.2-1build1_all.deb ... 952s Unpacking r-base-dev (4.3.2-1build1) ... 952s Selecting previously unselected package pkg-r-autopkgtest. 952s Preparing to unpack .../162-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 952s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 952s Selecting previously unselected package r-bioc-biocgenerics. 952s Preparing to unpack .../163-r-bioc-biocgenerics_0.48.1-2_all.deb ... 952s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 952s Selecting previously unselected package r-bioc-biobase. 952s Preparing to unpack .../164-r-bioc-biobase_2.62.0-1_amd64.deb ... 952s Unpacking r-bioc-biobase (2.62.0-1) ... 952s Selecting previously unselected package r-bioc-s4vectors. 952s Preparing to unpack .../165-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 952s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 952s Selecting previously unselected package r-bioc-iranges. 952s Preparing to unpack .../166-r-bioc-iranges_2.36.0-1_amd64.deb ... 952s Unpacking r-bioc-iranges (2.36.0-1) ... 952s Selecting previously unselected package r-cran-dbi. 952s Preparing to unpack .../167-r-cran-dbi_1.2.2-1_all.deb ... 952s Unpacking r-cran-dbi (1.2.2-1) ... 952s Selecting previously unselected package r-cran-bit. 952s Preparing to unpack .../168-r-cran-bit_4.0.5-1_amd64.deb ... 952s Unpacking r-cran-bit (4.0.5-1) ... 952s Selecting previously unselected package r-cran-bit64. 952s Preparing to unpack .../169-r-cran-bit64_4.0.5-1_amd64.deb ... 952s Unpacking r-cran-bit64 (4.0.5-1) ... 952s Selecting previously unselected package r-cran-rlang. 952s Preparing to unpack .../170-r-cran-rlang_1.1.3-1_amd64.deb ... 952s Unpacking r-cran-rlang (1.1.3-1) ... 953s Selecting previously unselected package r-cran-cli. 953s Preparing to unpack .../171-r-cran-cli_3.6.2-1_amd64.deb ... 953s Unpacking r-cran-cli (3.6.2-1) ... 953s Selecting previously unselected package r-cran-glue. 953s Preparing to unpack .../172-r-cran-glue_1.7.0-1_amd64.deb ... 953s Unpacking r-cran-glue (1.7.0-1) ... 953s Selecting previously unselected package r-cran-lifecycle. 953s Preparing to unpack .../173-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 953s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 953s Selecting previously unselected package r-cran-vctrs. 953s Preparing to unpack .../174-r-cran-vctrs_0.6.5-1_amd64.deb ... 953s Unpacking r-cran-vctrs (0.6.5-1) ... 953s Selecting previously unselected package r-cran-blob. 953s Preparing to unpack .../175-r-cran-blob_1.2.4-1_all.deb ... 953s Unpacking r-cran-blob (1.2.4-1) ... 953s Selecting previously unselected package r-cran-fastmap. 953s Preparing to unpack .../176-r-cran-fastmap_1.1.1-1_amd64.deb ... 953s Unpacking r-cran-fastmap (1.1.1-1) ... 953s Selecting previously unselected package r-cran-cachem. 953s Preparing to unpack .../177-r-cran-cachem_1.0.8-1_amd64.deb ... 953s Unpacking r-cran-cachem (1.0.8-1) ... 953s Selecting previously unselected package r-cran-memoise. 953s Preparing to unpack .../178-r-cran-memoise_2.0.1-1_all.deb ... 953s Unpacking r-cran-memoise (2.0.1-1) ... 953s Selecting previously unselected package r-cran-pkgconfig. 953s Preparing to unpack .../179-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 953s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 953s Selecting previously unselected package r-cran-plogr. 953s Preparing to unpack .../180-r-cran-plogr_0.2.0-3build1_all.deb ... 953s Unpacking r-cran-plogr (0.2.0-3build1) ... 953s Selecting previously unselected package r-cran-cpp11. 953s Preparing to unpack .../181-r-cran-cpp11_0.4.7-1_all.deb ... 953s Unpacking r-cran-cpp11 (0.4.7-1) ... 953s Selecting previously unselected package r-cran-rsqlite. 953s Preparing to unpack .../182-r-cran-rsqlite_2.3.4-1_amd64.deb ... 953s Unpacking r-cran-rsqlite (2.3.4-1) ... 953s Selecting previously unselected package r-cran-curl. 953s Preparing to unpack .../183-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 953s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 953s Selecting previously unselected package r-cran-jsonlite. 953s Preparing to unpack .../184-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 953s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 953s Selecting previously unselected package r-cran-mime. 953s Preparing to unpack .../185-r-cran-mime_0.12-1_amd64.deb ... 953s Unpacking r-cran-mime (0.12-1) ... 953s Selecting previously unselected package r-cran-sys. 953s Preparing to unpack .../186-r-cran-sys_3.4.2-1_amd64.deb ... 953s Unpacking r-cran-sys (3.4.2-1) ... 953s Selecting previously unselected package r-cran-askpass. 953s Preparing to unpack .../187-r-cran-askpass_1.2.0-1_amd64.deb ... 953s Unpacking r-cran-askpass (1.2.0-1) ... 953s Selecting previously unselected package r-cran-openssl. 953s Preparing to unpack .../188-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 953s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 953s Selecting previously unselected package r-cran-r6. 953s Preparing to unpack .../189-r-cran-r6_2.5.1-1_all.deb ... 953s Unpacking r-cran-r6 (2.5.1-1) ... 953s Selecting previously unselected package r-cran-httr. 953s Preparing to unpack .../190-r-cran-httr_1.4.7+dfsg-1_all.deb ... 953s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 953s Selecting previously unselected package r-cran-png. 953s Preparing to unpack .../191-r-cran-png_0.1-8-1_amd64.deb ... 953s Unpacking r-cran-png (0.1-8-1) ... 953s Selecting previously unselected package r-bioc-zlibbioc. 953s Preparing to unpack .../192-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 953s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 953s Selecting previously unselected package r-bioc-xvector. 953s Preparing to unpack .../193-r-bioc-xvector_0.42.0-1_amd64.deb ... 953s Unpacking r-bioc-xvector (0.42.0-1) ... 953s Selecting previously unselected package r-cran-bitops. 953s Preparing to unpack .../194-r-cran-bitops_1.0-7-1_amd64.deb ... 953s Unpacking r-cran-bitops (1.0-7-1) ... 953s Selecting previously unselected package r-cran-rcurl. 953s Preparing to unpack .../195-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 953s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 954s Selecting previously unselected package r-bioc-genomeinfodbdata. 954s Preparing to unpack .../196-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 954s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 954s Selecting previously unselected package r-bioc-genomeinfodb. 954s Preparing to unpack .../197-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 954s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 954s Selecting previously unselected package r-cran-crayon. 954s Preparing to unpack .../198-r-cran-crayon_1.5.2-1_all.deb ... 954s Unpacking r-cran-crayon (1.5.2-1) ... 954s Selecting previously unselected package r-bioc-biostrings. 954s Preparing to unpack .../199-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 954s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 954s Selecting previously unselected package r-bioc-keggrest. 954s Preparing to unpack .../200-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 954s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 954s Selecting previously unselected package r-bioc-annotationdbi. 954s Preparing to unpack .../201-r-bioc-annotationdbi_1.64.1-1_all.deb ... 954s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 954s Selecting previously unselected package r-cran-r.methodss3. 954s Preparing to unpack .../202-r-cran-r.methodss3_1.8.2-1_all.deb ... 954s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 954s Selecting previously unselected package r-cran-r.oo. 954s Preparing to unpack .../203-r-cran-r.oo_1.26.0-1_all.deb ... 954s Unpacking r-cran-r.oo (1.26.0-1) ... 954s Selecting previously unselected package r-cran-r.utils. 954s Preparing to unpack .../204-r-cran-r.utils_2.12.3-1_all.deb ... 954s Unpacking r-cran-r.utils (2.12.3-1) ... 954s Selecting previously unselected package r-cran-matrixstats. 954s Preparing to unpack .../205-r-cran-matrixstats_1.2.0-1_amd64.deb ... 954s Unpacking r-cran-matrixstats (1.2.0-1) ... 954s Selecting previously unselected package r-bioc-aroma.light. 954s Preparing to unpack .../206-r-bioc-aroma.light_3.32.0-1_all.deb ... 954s Unpacking r-bioc-aroma.light (3.32.0-1) ... 954s Selecting previously unselected package r-cran-generics. 954s Preparing to unpack .../207-r-cran-generics_0.1.3-1_all.deb ... 954s Unpacking r-cran-generics (0.1.3-1) ... 954s Selecting previously unselected package r-cran-magrittr. 954s Preparing to unpack .../208-r-cran-magrittr_2.0.3-1_amd64.deb ... 954s Unpacking r-cran-magrittr (2.0.3-1) ... 954s Selecting previously unselected package r-cran-fansi. 954s Preparing to unpack .../209-r-cran-fansi_1.0.5-1_amd64.deb ... 954s Unpacking r-cran-fansi (1.0.5-1) ... 954s Selecting previously unselected package r-cran-utf8. 954s Preparing to unpack .../210-r-cran-utf8_1.2.4-1_amd64.deb ... 954s Unpacking r-cran-utf8 (1.2.4-1) ... 954s Selecting previously unselected package r-cran-pillar. 954s Preparing to unpack .../211-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 954s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 954s Selecting previously unselected package r-cran-tibble. 954s Preparing to unpack .../212-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 954s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 954s Selecting previously unselected package r-cran-withr. 954s Preparing to unpack .../213-r-cran-withr_2.5.0-1_all.deb ... 954s Unpacking r-cran-withr (2.5.0-1) ... 954s Selecting previously unselected package r-cran-tidyselect. 954s Preparing to unpack .../214-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 954s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 954s Selecting previously unselected package r-cran-dplyr. 955s Preparing to unpack .../215-r-cran-dplyr_1.1.4-1_amd64.deb ... 955s Unpacking r-cran-dplyr (1.1.4-1) ... 955s Selecting previously unselected package r-cran-purrr. 955s Preparing to unpack .../216-r-cran-purrr_1.0.2-1_amd64.deb ... 955s Unpacking r-cran-purrr (1.0.2-1) ... 955s Selecting previously unselected package r-cran-stringi. 955s Preparing to unpack .../217-r-cran-stringi_1.8.3-1_amd64.deb ... 955s Unpacking r-cran-stringi (1.8.3-1) ... 955s Selecting previously unselected package r-cran-stringr. 955s Preparing to unpack .../218-r-cran-stringr_1.5.1-1_all.deb ... 955s Unpacking r-cran-stringr (1.5.1-1) ... 955s Selecting previously unselected package r-cran-tidyr. 955s Preparing to unpack .../219-r-cran-tidyr_1.3.1-1_amd64.deb ... 955s Unpacking r-cran-tidyr (1.3.1-1) ... 955s Selecting previously unselected package r-cran-dbplyr. 955s Preparing to unpack .../220-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 955s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 955s Selecting previously unselected package r-cran-filelock. 955s Preparing to unpack .../221-r-cran-filelock_1.0.3-1_amd64.deb ... 955s Unpacking r-cran-filelock (1.0.3-1) ... 955s Selecting previously unselected package r-bioc-biocfilecache. 955s Preparing to unpack .../222-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 955s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 955s Selecting previously unselected package r-bioc-biocio. 955s Preparing to unpack .../223-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 955s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 955s Selecting previously unselected package r-cran-formatr. 955s Preparing to unpack .../224-r-cran-formatr_1.14-1_all.deb ... 955s Unpacking r-cran-formatr (1.14-1) ... 955s Selecting previously unselected package r-cran-lambda.r. 955s Preparing to unpack .../225-r-cran-lambda.r_1.2.4-2build1_all.deb ... 955s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 955s Selecting previously unselected package r-cran-futile.options. 955s Preparing to unpack .../226-r-cran-futile.options_1.0.1-3build1_all.deb ... 955s Unpacking r-cran-futile.options (1.0.1-3build1) ... 955s Selecting previously unselected package r-cran-futile.logger. 955s Preparing to unpack .../227-r-cran-futile.logger_1.4.3-4build1_all.deb ... 955s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 955s Selecting previously unselected package r-cran-snow. 955s Preparing to unpack .../228-r-cran-snow_1%3a0.4.4-2_all.deb ... 955s Unpacking r-cran-snow (1:0.4.4-2) ... 955s Selecting previously unselected package r-cran-codetools. 955s Preparing to unpack .../229-r-cran-codetools_0.2-19-1_all.deb ... 955s Unpacking r-cran-codetools (0.2-19-1) ... 955s Selecting previously unselected package r-cran-bh. 955s Preparing to unpack .../230-r-cran-bh_1.84.0-1_all.deb ... 955s Unpacking r-cran-bh (1.84.0-1) ... 955s Selecting previously unselected package r-bioc-biocparallel. 955s Preparing to unpack .../231-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 955s Unpacking r-bioc-biocparallel (1.36.0-1) ... 955s Selecting previously unselected package r-cran-base64enc. 955s Preparing to unpack .../232-r-cran-base64enc_0.1-3-3_amd64.deb ... 955s Unpacking r-cran-base64enc (0.1-3-3) ... 955s Selecting previously unselected package r-cran-digest. 955s Preparing to unpack .../233-r-cran-digest_0.6.34-1_amd64.deb ... 955s Unpacking r-cran-digest (0.6.34-1) ... 955s Selecting previously unselected package r-cran-ellipsis. 955s Preparing to unpack .../234-r-cran-ellipsis_0.3.2-2_amd64.deb ... 955s Unpacking r-cran-ellipsis (0.3.2-2) ... 955s Selecting previously unselected package r-cran-htmltools. 955s Preparing to unpack .../235-r-cran-htmltools_0.5.7-1_amd64.deb ... 955s Unpacking r-cran-htmltools (0.5.7-1) ... 955s Selecting previously unselected package r-cran-evaluate. 955s Preparing to unpack .../236-r-cran-evaluate_0.23-1_all.deb ... 955s Unpacking r-cran-evaluate (0.23-1) ... 955s Selecting previously unselected package r-cran-xfun. 955s Preparing to unpack .../237-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 955s Unpacking r-cran-xfun (0.41+dfsg-1) ... 955s Selecting previously unselected package r-cran-highr. 955s Preparing to unpack .../238-r-cran-highr_0.10+dfsg-1_all.deb ... 955s Unpacking r-cran-highr (0.10+dfsg-1) ... 956s Selecting previously unselected package r-cran-yaml. 956s Preparing to unpack .../239-r-cran-yaml_2.3.8-1_amd64.deb ... 956s Unpacking r-cran-yaml (2.3.8-1) ... 956s Selecting previously unselected package libjs-mathjax. 956s Preparing to unpack .../240-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 956s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 956s Selecting previously unselected package r-cran-knitr. 956s Preparing to unpack .../241-r-cran-knitr_1.45+dfsg-1_all.deb ... 956s Unpacking r-cran-knitr (1.45+dfsg-1) ... 956s Selecting previously unselected package r-cran-jquerylib. 956s Preparing to unpack .../242-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 956s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 956s Selecting previously unselected package r-cran-fs. 956s Preparing to unpack .../243-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 956s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 957s Selecting previously unselected package r-cran-rappdirs. 957s Preparing to unpack .../244-r-cran-rappdirs_0.3.3-1_amd64.deb ... 957s Unpacking r-cran-rappdirs (0.3.3-1) ... 957s Selecting previously unselected package r-cran-sass. 957s Preparing to unpack .../245-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 957s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 957s Selecting previously unselected package r-cran-bslib. 957s Preparing to unpack .../246-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 957s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 957s Selecting previously unselected package r-cran-fontawesome. 957s Preparing to unpack .../247-r-cran-fontawesome_0.5.2-1_all.deb ... 957s Unpacking r-cran-fontawesome (0.5.2-1) ... 957s Selecting previously unselected package r-cran-tinytex. 957s Preparing to unpack .../248-r-cran-tinytex_0.49-1_all.deb ... 957s Unpacking r-cran-tinytex (0.49-1) ... 957s Selecting previously unselected package libjs-modernizr. 957s Preparing to unpack .../249-libjs-modernizr_2.6.2+ds1-5_all.deb ... 957s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 957s Selecting previously unselected package r-cran-littler. 957s Preparing to unpack .../250-r-cran-littler_0.3.19-1_amd64.deb ... 957s Unpacking r-cran-littler (0.3.19-1) ... 957s Selecting previously unselected package r-cran-pkgkitten. 957s Preparing to unpack .../251-r-cran-pkgkitten_0.2.3-1_all.deb ... 957s Unpacking r-cran-pkgkitten (0.2.3-1) ... 957s Selecting previously unselected package r-cran-rcpp. 957s Preparing to unpack .../252-r-cran-rcpp_1.0.12-1_amd64.deb ... 957s Unpacking r-cran-rcpp (1.0.12-1) ... 957s Selecting previously unselected package r-cran-later. 957s Preparing to unpack .../253-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 957s Unpacking r-cran-later (1.3.2+dfsg-1) ... 957s Selecting previously unselected package r-cran-promises. 957s Preparing to unpack .../254-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 957s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 957s Selecting previously unselected package r-cran-httpuv. 957s Preparing to unpack .../255-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 957s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 957s Selecting previously unselected package r-cran-xtable. 957s Preparing to unpack .../256-r-cran-xtable_1%3a1.8-4-2_all.deb ... 957s Unpacking r-cran-xtable (1:1.8-4-2) ... 957s Selecting previously unselected package r-cran-sourcetools. 957s Preparing to unpack .../257-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 957s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 957s Selecting previously unselected package r-cran-commonmark. 957s Preparing to unpack .../258-r-cran-commonmark_1.9.1-1_amd64.deb ... 957s Unpacking r-cran-commonmark (1.9.1-1) ... 958s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 958s Preparing to unpack .../259-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 958s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 958s Selecting previously unselected package r-cran-shiny. 958s Preparing to unpack .../260-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 958s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 958s Selecting previously unselected package r-cran-rmarkdown. 958s Preparing to unpack .../261-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 958s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 958s Selecting previously unselected package r-cran-bookdown. 958s Preparing to unpack .../262-r-cran-bookdown_0.37+dfsg-1_all.deb ... 958s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 958s Selecting previously unselected package r-cran-biocmanager. 958s Preparing to unpack .../263-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 958s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 958s Selecting previously unselected package tex-common. 958s Preparing to unpack .../264-tex-common_6.18_all.deb ... 958s Unpacking tex-common (6.18) ... 958s Selecting previously unselected package t1utils. 958s Preparing to unpack .../265-t1utils_1.41-4build2_amd64.deb ... 958s Unpacking t1utils (1.41-4build2) ... 958s Selecting previously unselected package texlive-binaries. 958s Preparing to unpack .../266-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 958s Unpacking texlive-binaries (2023.20230311.66589-9) ... 958s Selecting previously unselected package texlive-base. 958s Preparing to unpack .../267-texlive-base_2023.20240207-1_all.deb ... 958s Unpacking texlive-base (2023.20240207-1) ... 960s Selecting previously unselected package texlive-latex-base. 960s Preparing to unpack .../268-texlive-latex-base_2023.20240207-1_all.deb ... 960s Unpacking texlive-latex-base (2023.20240207-1) ... 960s Selecting previously unselected package texlive-bibtex-extra. 960s Preparing to unpack .../269-texlive-bibtex-extra_2023.20240207-1_all.deb ... 960s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 964s Selecting previously unselected package r-bioc-biocstyle. 964s Preparing to unpack .../270-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 964s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 964s Selecting previously unselected package r-cran-xml. 964s Preparing to unpack .../271-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 964s Unpacking r-cran-xml (3.99-0.16.1-1) ... 964s Selecting previously unselected package r-cran-hms. 964s Preparing to unpack .../272-r-cran-hms_1.1.3-1_all.deb ... 964s Unpacking r-cran-hms (1.1.3-1) ... 964s Selecting previously unselected package r-cran-prettyunits. 964s Preparing to unpack .../273-r-cran-prettyunits_1.2.0-1_all.deb ... 964s Unpacking r-cran-prettyunits (1.2.0-1) ... 964s Selecting previously unselected package r-cran-progress. 964s Preparing to unpack .../274-r-cran-progress_1.2.3-1_all.deb ... 964s Unpacking r-cran-progress (1.2.3-1) ... 964s Selecting previously unselected package r-cran-xml2. 964s Preparing to unpack .../275-r-cran-xml2_1.3.6-1_amd64.deb ... 964s Unpacking r-cran-xml2 (1.3.6-1) ... 964s Selecting previously unselected package r-bioc-biomart. 964s Preparing to unpack .../276-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 964s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 964s Selecting previously unselected package r-bioc-genomicranges. 964s Preparing to unpack .../277-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 964s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 964s Selecting previously unselected package r-bioc-rhtslib. 964s Preparing to unpack .../278-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 964s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 964s Selecting previously unselected package r-bioc-rsamtools. 964s Preparing to unpack .../279-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 964s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 964s Selecting previously unselected package r-bioc-matrixgenerics. 964s Preparing to unpack .../280-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 964s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 964s Selecting previously unselected package r-cran-lattice. 964s Preparing to unpack .../281-r-cran-lattice_0.22-5-1_amd64.deb ... 964s Unpacking r-cran-lattice (0.22-5-1) ... 964s Selecting previously unselected package r-cran-matrix. 964s Preparing to unpack .../282-r-cran-matrix_1.6-5-1_amd64.deb ... 964s Unpacking r-cran-matrix (1.6-5-1) ... 964s Selecting previously unselected package r-cran-abind. 964s Preparing to unpack .../283-r-cran-abind_1.4-5-2_all.deb ... 964s Unpacking r-cran-abind (1.4-5-2) ... 965s Selecting previously unselected package r-bioc-s4arrays. 965s Preparing to unpack .../284-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 965s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 965s Selecting previously unselected package r-bioc-sparsearray. 965s Preparing to unpack .../285-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 965s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 965s Selecting previously unselected package r-bioc-delayedarray. 965s Preparing to unpack .../286-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 965s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 965s Selecting previously unselected package r-bioc-summarizedexperiment. 965s Preparing to unpack .../287-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 965s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 965s Selecting previously unselected package r-bioc-genomicalignments. 965s Preparing to unpack .../288-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 965s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 965s Selecting previously unselected package r-cran-rjson. 965s Preparing to unpack .../289-r-cran-rjson_0.2.21-1_amd64.deb ... 965s Unpacking r-cran-rjson (0.2.21-1) ... 965s Selecting previously unselected package r-cran-restfulr. 965s Preparing to unpack .../290-r-cran-restfulr_0.0.15-1_amd64.deb ... 965s Unpacking r-cran-restfulr (0.0.15-1) ... 965s Selecting previously unselected package r-bioc-rtracklayer. 965s Preparing to unpack .../291-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 965s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 965s Selecting previously unselected package r-bioc-bsgenome. 965s Preparing to unpack .../292-r-bioc-bsgenome_1.70.2-1_all.deb ... 965s Unpacking r-bioc-bsgenome (1.70.2-1) ... 965s Selecting previously unselected package r-bioc-dnacopy. 965s Preparing to unpack .../293-r-bioc-dnacopy_1.76.0-1_amd64.deb ... 965s Unpacking r-bioc-dnacopy (1.76.0-1) ... 965s Selecting previously unselected package r-bioc-genomicfeatures. 965s Preparing to unpack .../294-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 965s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 965s Selecting previously unselected package r-bioc-org.hs.eg.db. 965s Preparing to unpack .../295-r-bioc-org.hs.eg.db_3.18.0-1_all.deb ... 965s Unpacking r-bioc-org.hs.eg.db (3.18.0-1) ... 967s Selecting previously unselected package r-bioc-variantannotation. 967s Preparing to unpack .../296-r-bioc-variantannotation_1.48.1-1_amd64.deb ... 967s Unpacking r-bioc-variantannotation (1.48.1-1) ... 967s Selecting previously unselected package r-cran-rcolorbrewer. 967s Preparing to unpack .../297-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 967s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 967s Selecting previously unselected package r-cran-data.table. 967s Preparing to unpack .../298-r-cran-data.table_1.14.10+dfsg-1_amd64.deb ... 967s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 967s Selecting previously unselected package r-cran-gtable. 967s Preparing to unpack .../299-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 967s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 967s Selecting previously unselected package r-cran-isoband. 967s Preparing to unpack .../300-r-cran-isoband_0.2.7-1_amd64.deb ... 967s Unpacking r-cran-isoband (0.2.7-1) ... 967s Selecting previously unselected package r-cran-mass. 967s Preparing to unpack .../301-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 967s Unpacking r-cran-mass (7.3-60.0.1-1) ... 967s Selecting previously unselected package r-cran-nlme. 967s Preparing to unpack .../302-r-cran-nlme_3.1.164-1_amd64.deb ... 967s Unpacking r-cran-nlme (3.1.164-1) ... 967s Selecting previously unselected package r-cran-mgcv. 967s Preparing to unpack .../303-r-cran-mgcv_1.9-1-1_amd64.deb ... 967s Unpacking r-cran-mgcv (1.9-1-1) ... 967s Selecting previously unselected package r-cran-farver. 967s Preparing to unpack .../304-r-cran-farver_2.1.1-1_amd64.deb ... 967s Unpacking r-cran-farver (2.1.1-1) ... 968s Selecting previously unselected package r-cran-labeling. 968s Preparing to unpack .../305-r-cran-labeling_0.4.3-1_all.deb ... 968s Unpacking r-cran-labeling (0.4.3-1) ... 968s Selecting previously unselected package r-cran-colorspace. 968s Preparing to unpack .../306-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 968s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 968s Selecting previously unselected package r-cran-munsell. 968s Preparing to unpack .../307-r-cran-munsell_0.5.0-2build1_all.deb ... 968s Unpacking r-cran-munsell (0.5.0-2build1) ... 968s Selecting previously unselected package r-cran-viridislite. 968s Preparing to unpack .../308-r-cran-viridislite_0.4.2-2_all.deb ... 968s Unpacking r-cran-viridislite (0.4.2-2) ... 968s Selecting previously unselected package r-cran-scales. 968s Preparing to unpack .../309-r-cran-scales_1.3.0-1_all.deb ... 968s Unpacking r-cran-scales (1.3.0-1) ... 968s Selecting previously unselected package r-cran-ggplot2. 968s Preparing to unpack .../310-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 968s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 968s Selecting previously unselected package r-cran-gridextra. 968s Preparing to unpack .../311-r-cran-gridextra_2.3-3build1_all.deb ... 968s Unpacking r-cran-gridextra (2.3-3build1) ... 968s Selecting previously unselected package r-cran-vgam. 968s Preparing to unpack .../312-r-cran-vgam_1.1-9-1_amd64.deb ... 968s Unpacking r-cran-vgam (1.1-9-1) ... 968s Selecting previously unselected package r-cran-mclust. 968s Preparing to unpack .../313-r-cran-mclust_6.0.1-1_amd64.deb ... 968s Unpacking r-cran-mclust (6.0.1-1) ... 968s Selecting previously unselected package r-bioc-rhdf5lib. 968s Preparing to unpack .../314-r-bioc-rhdf5lib_1.24.2+dfsg-1_amd64.deb ... 968s Unpacking r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 968s Selecting previously unselected package r-bioc-rhdf5filters. 968s Preparing to unpack .../315-r-bioc-rhdf5filters_1.14.1+dfsg-3_amd64.deb ... 968s Unpacking r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 968s Selecting previously unselected package r-bioc-rhdf5. 968s Preparing to unpack .../316-r-bioc-rhdf5_2.46.1+dfsg-1_amd64.deb ... 968s Unpacking r-bioc-rhdf5 (2.46.1+dfsg-1) ... 968s Selecting previously unselected package r-bioc-purecn. 968s Preparing to unpack .../317-r-bioc-purecn_2.8.1+dfsg-1_all.deb ... 968s Unpacking r-bioc-purecn (2.8.1+dfsg-1) ... 968s Selecting previously unselected package r-cran-brio. 968s Preparing to unpack .../318-r-cran-brio_1.1.4-1_amd64.deb ... 968s Unpacking r-cran-brio (1.1.4-1) ... 968s Selecting previously unselected package r-cran-ps. 968s Preparing to unpack .../319-r-cran-ps_1.7.6-1_amd64.deb ... 968s Unpacking r-cran-ps (1.7.6-1) ... 968s Selecting previously unselected package r-cran-processx. 969s Preparing to unpack .../320-r-cran-processx_3.8.3-1_amd64.deb ... 969s Unpacking r-cran-processx (3.8.3-1) ... 969s Selecting previously unselected package r-cran-callr. 969s Preparing to unpack .../321-r-cran-callr_3.7.3-2_all.deb ... 969s Unpacking r-cran-callr (3.7.3-2) ... 969s Selecting previously unselected package r-cran-lazyeval. 969s Preparing to unpack .../322-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 969s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 969s Selecting previously unselected package r-cran-rex. 969s Preparing to unpack .../323-r-cran-rex_1.2.1-1_all.deb ... 969s Unpacking r-cran-rex (1.2.1-1) ... 969s Selecting previously unselected package r-cran-covr. 969s Preparing to unpack .../324-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 969s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 969s Selecting previously unselected package r-cran-desc. 969s Preparing to unpack .../325-r-cran-desc_1.4.3-1_all.deb ... 969s Unpacking r-cran-desc (1.4.3-1) ... 969s Selecting previously unselected package r-cran-diffobj. 969s Preparing to unpack .../326-r-cran-diffobj_0.3.5-1_amd64.deb ... 969s Unpacking r-cran-diffobj (0.3.5-1) ... 969s Selecting previously unselected package r-cran-globals. 969s Preparing to unpack .../327-r-cran-globals_0.16.2-1_all.deb ... 969s Unpacking r-cran-globals (0.16.2-1) ... 969s Selecting previously unselected package r-cran-listenv. 969s Preparing to unpack .../328-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 969s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 969s Selecting previously unselected package r-cran-parallelly. 969s Preparing to unpack .../329-r-cran-parallelly_1.37.1-1_amd64.deb ... 969s Unpacking r-cran-parallelly (1.37.1-1) ... 969s Selecting previously unselected package r-cran-future. 969s Preparing to unpack .../330-r-cran-future_1.33.1+dfsg-1_all.deb ... 969s Unpacking r-cran-future (1.33.1+dfsg-1) ... 969s Selecting previously unselected package r-cran-getopt. 969s Preparing to unpack .../331-r-cran-getopt_1.20.4-1_all.deb ... 969s Unpacking r-cran-getopt (1.20.4-1) ... 969s Selecting previously unselected package r-cran-markdown. 969s Preparing to unpack .../332-r-cran-markdown_1.12+dfsg-1_all.deb ... 969s Unpacking r-cran-markdown (1.12+dfsg-1) ... 969s Selecting previously unselected package r-cran-optparse. 969s Preparing to unpack .../333-r-cran-optparse_1.7.4-1_all.deb ... 969s Unpacking r-cran-optparse (1.7.4-1) ... 969s Selecting previously unselected package r-cran-pkgbuild. 969s Preparing to unpack .../334-r-cran-pkgbuild_1.4.3-1_all.deb ... 969s Unpacking r-cran-pkgbuild (1.4.3-1) ... 969s Selecting previously unselected package r-cran-rprojroot. 969s Preparing to unpack .../335-r-cran-rprojroot_2.0.4-1_all.deb ... 969s Unpacking r-cran-rprojroot (2.0.4-1) ... 969s Selecting previously unselected package r-cran-pkgload. 969s Preparing to unpack .../336-r-cran-pkgload_1.3.4-1_all.deb ... 969s Unpacking r-cran-pkgload (1.3.4-1) ... 969s Selecting previously unselected package r-cran-praise. 969s Preparing to unpack .../337-r-cran-praise_1.0.0-4build1_all.deb ... 969s Unpacking r-cran-praise (1.0.0-4build1) ... 969s Selecting previously unselected package r-cran-r.cache. 969s Preparing to unpack .../338-r-cran-r.cache_0.16.0-1_all.deb ... 969s Unpacking r-cran-r.cache (0.16.0-1) ... 969s Selecting previously unselected package r-cran-pscbs. 969s Preparing to unpack .../339-r-cran-pscbs_0.66.0-2_all.deb ... 969s Unpacking r-cran-pscbs (0.66.0-2) ... 969s Selecting previously unselected package r-cran-rematch2. 969s Preparing to unpack .../340-r-cran-rematch2_2.1.2-2build1_all.deb ... 969s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 969s Selecting previously unselected package r-cran-waldo. 970s Preparing to unpack .../341-r-cran-waldo_0.5.2-1build1_all.deb ... 970s Unpacking r-cran-waldo (0.5.2-1build1) ... 970s Selecting previously unselected package r-cran-testthat. 970s Preparing to unpack .../342-r-cran-testthat_3.2.1-1_amd64.deb ... 970s Unpacking r-cran-testthat (3.2.1-1) ... 970s Setting up libjs-json (0~20221030+~1.0.8-1) ... 970s Setting up javascript-common (11+nmu1) ... 970s Setting up libgraphite2-3:amd64 (1.3.14-2) ... 970s Setting up libpixman-1-0:amd64 (0.42.2-1) ... 970s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ... 970s Setting up libpaper1:amd64 (1.1.29) ... 970s 970s Creating config file /etc/papersize with new version 970s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 970s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 970s Setting up libxpm4:amd64 (1:3.5.17-1) ... 970s Setting up hdf5-helpers (1.10.10+repack-3ubuntu1) ... 970s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 970s Setting up libxi6:amd64 (2:1.8.1-1) ... 970s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 970s Setting up libdatrie1:amd64 (0.2.13-3) ... 970s Setting up libjs-popper.js (1.16.1+ds-6) ... 970s Setting up libxcb-render0:amd64 (1.15-1) ... 970s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 970s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 970s Setting up libjs-lunr (2.3.9~dfsg-2) ... 970s Setting up unzip (6.0-28ubuntu3) ... 970s Setting up liblatex-tounicode-perl (0.54-2) ... 970s Setting up x11-common (1:7.7+23ubuntu2) ... 970s Setting up node-html5shiv (3.7.3+dfsg-5) ... 970s Setting up libdeflate0:amd64 (1.19-1) ... 970s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 970s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 970s Setting up libxcb-shm0:amd64 (1.15-1) ... 970s Setting up libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 970s Setting up libpaper-utils (1.1.29) ... 970s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ... 970s Setting up libjs-modernizr (2.6.2+ds1-5) ... 970s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ... 970s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 970s Setting up libaec0:amd64 (1.1.2-1) ... 970s Setting up libsnappy1v5:amd64 (1.1.10-1) ... 970s Setting up libjs-es5-shim (4.6.7-2) ... 970s Setting up tex-common (6.18) ... 971s update-language: texlive-base not installed and configured, doing nothing! 971s Setting up libio-string-perl (1.08-4) ... 971s Setting up zip (3.0-13) ... 971s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 971s Setting up libblas3:amd64 (3.12.0-3) ... 971s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 971s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 971s Setting up libpkgconf3:amd64 (1.8.1-2) ... 971s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 971s Setting up libcurl4-openssl-dev:amd64 (8.5.0-2ubuntu2) ... 971s Setting up libteckit0:amd64 (2.5.12+ds1-1) ... 971s Setting up t1utils (1.41-4build2) ... 971s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ... 971s Setting up libtexlua53-5:amd64 (2023.20230311.66589-9) ... 971s Setting up libjs-d3 (3.5.17-4) ... 971s Setting up fonts-dejavu-mono (2.37-8) ... 971s Setting up libssl-dev:amd64 (3.0.10-1ubuntu4) ... 971s Setting up libmpc3:amd64 (1.3.1-1) ... 971s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ... 971s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... 971s Setting up icu-devtools (74.2-1ubuntu1) ... 971s Setting up fonts-dejavu-core (2.37-8) ... 971s Setting up pkgconf-bin (1.8.1-2) ... 971s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 971s Setting up libkpathsea6:amd64 (2023.20230311.66589-9) ... 971s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 971s Setting up libwebp7:amd64 (1.3.2-0.4) ... 971s Setting up liblzma-dev:amd64 (5.4.5-0.3) ... 971s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ... 971s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 971s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 971s Setting up libnsl-dev:amd64 (1.3.0-3) ... 971s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 971s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 971s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 971s Setting up libblosc1:amd64 (1.21.5+ds-1) ... 971s Setting up fonts-lmodern (2.005-1) ... 971s Setting up liblua5.4-0:amd64 (5.4.6-3) ... 971s Setting up libharfbuzz0b:amd64 (8.3.0-2) ... 971s Setting up libthai-data (0.1.29-2) ... 971s Setting up node-bootstrap-sass (3.4.3-2) ... 971s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 971s Setting up libxss1:amd64 (1:1.2.3-1build2) ... 971s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 971s Setting up pandoc-data (3.1.3-1) ... 971s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ... 971s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 971s Setting up libisl23:amd64 (0.26-3) ... 971s Setting up libc-dev-bin (2.39-0ubuntu2) ... 971s Setting up node-normalize.css (8.0.1-5) ... 971s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 971s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 971s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 971s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 971s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 971s Setting up libblas-dev:amd64 (3.12.0-3) ... 971s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 971s Setting up libsz2:amd64 (1.1.2-1) ... 971s Setting up dctrl-tools (2.24-3build2) ... 971s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 971s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 971s Setting up libsynctex2:amd64 (2023.20230311.66589-9) ... 971s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 971s Setting up libpotrace0:amd64 (1.16-2) ... 971s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 971s Setting up libice6:amd64 (2:1.0.10-1build2) ... 971s Setting up liblapack3:amd64 (3.12.0-3) ... 971s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 971s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 971s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 971s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 971s Setting up libaec-dev:amd64 (1.1.2-1) ... 971s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 971s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 971s Setting up pkgconf:amd64 (1.8.1-2) ... 971s Setting up libthai0:amd64 (0.1.29-2) ... 971s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 971s Setting up libptexenc1:amd64 (2023.20230311.66589-9) ... 971s Setting up pandoc (3.1.3+ds-2) ... 971s Setting up liblapack-dev:amd64 (3.12.0-3) ... 971s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 971s Setting up pkg-config:amd64 (1.8.1-2) ... 971s Setting up libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 971s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 971s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 971s Setting up libhdf5-cpp-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 971s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ... 971s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 971s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 971s Setting up libsm6:amd64 (2:1.2.3-1build2) ... 971s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ... 971s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 971s Setting up libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 971s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 971s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 971s Setting up fontconfig (2.15.0-1ubuntu1) ... 973s Regenerating fonts cache... done. 973s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 973s Setting up libxft2:amd64 (2.3.6-1) ... 973s Setting up libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 973s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 973s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ... 973s Setting up cpp-13 (13.2.0-17ubuntu2) ... 973s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 973s Setting up libtk8.6:amd64 (8.6.13-2) ... 973s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... 973s Setting up libreadline-dev:amd64 (8.2-3) ... 973s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 973s Setting up libcairo2:amd64 (1.18.0-1) ... 973s Setting up libhdf5-hl-cpp-100:amd64 (1.10.10+repack-3ubuntu1) ... 973s Setting up gcc-13 (13.2.0-17ubuntu2) ... 973s Setting up libhdf5-fortran-102:amd64 (1.10.10+repack-3ubuntu1) ... 973s Setting up libxt6:amd64 (1:1.2.1-1.1) ... 973s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 973s Setting up cpp (4:13.2.0-7ubuntu1) ... 973s Setting up libhdf5-hl-fortran-100:amd64 (1.10.10+repack-3ubuntu1) ... 973s Setting up libboost-dev:amd64 (1.83.0.1ubuntu2) ... 973s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 973s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 973s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 973s Setting up libxmu6:amd64 (2:1.1.3-3) ... 973s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 973s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 973s Setting up libpng-dev:amd64 (1.6.43-1) ... 973s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 973s Setting up libxaw7:amd64 (2:1.0.14-1) ... 973s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 973s Setting up gcc (4:13.2.0-7ubuntu1) ... 973s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 973s Setting up r-base-core (4.3.2-1build1) ... 973s 973s Creating config file /etc/R/Renviron with new version 973s Setting up r-cran-crayon (1.5.2-1) ... 973s Setting up libhdf5-dev (1.10.10+repack-3ubuntu1) ... 973s update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 973s Setting up r-cran-labeling (0.4.3-1) ... 973s Setting up r-cran-sourcetools (0.1.7-1-1) ... 973s Setting up r-cran-futile.options (1.0.1-3build1) ... 973s Setting up r-cran-lattice (0.22-5-1) ... 973s Setting up r-cran-ps (1.7.6-1) ... 973s Setting up r-cran-nlme (3.1.164-1) ... 973s Setting up r-cran-farver (2.1.1-1) ... 973s Setting up r-cran-formatr (1.14-1) ... 973s Setting up r-cran-xml (3.99-0.16.1-1) ... 973s Setting up r-cran-viridislite (0.4.2-2) ... 973s Setting up texlive-binaries (2023.20230311.66589-9) ... 973s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 973s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 973s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 973s Setting up r-cran-lazyeval (0.2.2-1build1) ... 973s Setting up r-cran-commonmark (1.9.1-1) ... 973s Setting up r-cran-r6 (2.5.1-1) ... 973s Setting up r-cran-pkgkitten (0.2.3-1) ... 973s Setting up texlive-base (2023.20240207-1) ... 974s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 974s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 975s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 975s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 975s Setting up r-cran-magrittr (2.0.3-1) ... 975s Setting up r-cran-rappdirs (0.3.3-1) ... 975s Setting up r-cran-filelock (1.0.3-1) ... 975s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 975s Setting up r-cran-littler (0.3.19-1) ... 975s Setting up r-cran-bh (1.84.0-1) ... 975s Setting up r-cran-fs (1.6.3+dfsg-1) ... 975s Setting up r-cran-rcpp (1.0.12-1) ... 975s Setting up r-cran-curl (5.2.0+dfsg-1) ... 975s Setting up r-cran-codetools (0.2-19-1) ... 975s Setting up g++-13 (13.2.0-17ubuntu2) ... 975s Setting up r-cran-brio (1.1.4-1) ... 975s Setting up r-cran-diffobj (0.3.5-1) ... 975s Setting up r-bioc-biocgenerics (0.48.1-2) ... 975s Setting up r-cran-rlang (1.1.3-1) ... 975s Setting up r-cran-matrixstats (1.2.0-1) ... 975s Setting up r-cran-listenv (0.9.1+dfsg-1) ... 975s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 975s Setting up r-cran-xfun (0.41+dfsg-1) ... 975s Setting up r-cran-vgam (1.1-9-1) ... 975s Setting up r-cran-sys (3.4.2-1) ... 975s Setting up r-cran-plogr (0.2.0-3build1) ... 975s Setting up r-cran-withr (2.5.0-1) ... 975s Setting up r-cran-processx (3.8.3-1) ... 975s Setting up r-cran-mime (0.12-1) ... 975s Setting up r-cran-praise (1.0.0-4build1) ... 975s Setting up r-cran-generics (0.1.3-1) ... 975s Setting up r-cran-base64enc (0.1-3-3) ... 975s Setting up r-cran-abind (1.4-5-2) ... 975s Setting up r-cran-digest (0.6.34-1) ... 975s Setting up r-cran-yaml (2.3.8-1) ... 975s Setting up r-cran-lambda.r (1.2.4-2build1) ... 975s Setting up r-cran-evaluate (0.23-1) ... 975s Setting up r-cran-dbi (1.2.2-1) ... 975s Setting up r-cran-highr (0.10+dfsg-1) ... 975s Setting up r-cran-prettyunits (1.2.0-1) ... 975s Setting up r-cran-fansi (1.0.5-1) ... 975s Setting up r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 975s Setting up r-cran-mass (7.3-60.0.1-1) ... 975s Setting up r-cran-mclust (6.0.1-1) ... 975s Setting up r-cran-snow (1:0.4.4-2) ... 975s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 975s Setting up r-cran-glue (1.7.0-1) ... 975s Setting up r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 975s Setting up r-cran-bit (4.0.5-1) ... 975s Setting up r-cran-xtable (1:1.8-4-2) ... 975s Setting up r-cran-cli (3.6.2-1) ... 975s Setting up gfortran (4:13.2.0-7ubuntu1) ... 975s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 975s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 975s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 975s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 975s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 975s Setting up r-cran-bitops (1.0-7-1) ... 975s Setting up r-cran-rprojroot (2.0.4-1) ... 975s Setting up r-cran-bit64 (4.0.5-1) ... 975s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 975s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 975s Setting up r-cran-askpass (1.2.0-1) ... 975s Setting up r-cran-fastmap (1.1.1-1) ... 975s Setting up r-cran-png (0.1-8-1) ... 975s Setting up r-cran-r.methodss3 (1.8.2-1) ... 975s Setting up r-bioc-biobase (2.62.0-1) ... 975s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 975s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 975s Setting up r-cran-getopt (1.20.4-1) ... 975s Setting up r-cran-utf8 (1.2.4-1) ... 975s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 975s Setting up r-cran-parallelly (1.37.1-1) ... 975s Setting up r-cran-stringi (1.8.3-1) ... 975s Setting up texlive-latex-base (2023.20240207-1) ... 975s Setting up r-cran-rex (1.2.1-1) ... 975s Setting up r-cran-markdown (1.12+dfsg-1) ... 975s Setting up r-cran-cpp11 (0.4.7-1) ... 975s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 975s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 975s Setting up r-cran-isoband (0.2.7-1) ... 975s Setting up r-cran-futile.logger (1.4.3-4build1) ... 975s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 975s Setting up r-cran-later (1.3.2+dfsg-1) ... 975s Setting up r-cran-matrix (1.6-5-1) ... 975s Setting up r-cran-tinytex (0.49-1) ... 975s Setting up r-cran-knitr (1.45+dfsg-1) ... 975s Setting up r-cran-mgcv (1.9-1-1) ... 975s Setting up g++ (4:13.2.0-7ubuntu1) ... 975s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 975s Setting up r-bioc-dnacopy (1.76.0-1) ... 975s Setting up r-cran-cachem (1.0.8-1) ... 975s Setting up build-essential (12.10ubuntu1) ... 975s Setting up r-bioc-iranges (2.36.0-1) ... 975s Setting up r-cran-rjson (0.2.21-1) ... 975s Setting up r-cran-globals (0.16.2-1) ... 975s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 975s Setting up r-cran-restfulr (0.0.15-1) ... 975s Setting up r-cran-optparse (1.7.4-1) ... 975s Setting up r-cran-vctrs (0.6.5-1) ... 975s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 975s Setting up r-cran-ellipsis (0.3.2-2) ... 975s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 975s Setting up r-base-dev (4.3.2-1build1) ... 975s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 975s Setting up r-cran-stringr (1.5.1-1) ... 975s Setting up r-bioc-biocparallel (1.36.0-1) ... 975s Setting up r-cran-callr (3.7.3-2) ... 975s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 975s Setting up r-cran-desc (1.4.3-1) ... 975s Setting up r-cran-xml2 (1.3.6-1) ... 975s Setting up r-bioc-rhdf5 (2.46.1+dfsg-1) ... 975s Setting up r-cran-munsell (0.5.0-2build1) ... 975s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 975s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 975s Setting up r-cran-r.oo (1.26.0-1) ... 975s Setting up r-cran-future (1.33.1+dfsg-1) ... 975s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 975s Setting up texlive-bibtex-extra (2023.20240207-1) ... 975s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 975s Setting up r-cran-httr (1.4.7+dfsg-1) ... 975s Setting up r-cran-gridextra (2.3-3build1) ... 975s Setting up r-cran-hms (1.1.3-1) ... 975s Setting up r-cran-scales (1.3.0-1) ... 975s Setting up r-cran-memoise (2.0.1-1) ... 975s Setting up r-cran-covr (3.6.4+dfsg-1) ... 975s Setting up r-cran-promises (1.2.1+dfsg-1) ... 975s Setting up r-cran-purrr (1.0.2-1) ... 975s Setting up r-cran-blob (1.2.4-1) ... 975s Setting up r-cran-htmltools (0.5.7-1) ... 975s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 975s Setting up r-bioc-xvector (0.42.0-1) ... 975s Setting up r-cran-pkgbuild (1.4.3-1) ... 975s Setting up r-cran-sass (0.4.8+dfsg-1) ... 975s Setting up r-cran-dplyr (1.1.4-1) ... 975s Setting up r-cran-rsqlite (2.3.4-1) ... 975s Setting up r-cran-progress (1.2.3-1) ... 975s Setting up r-cran-pkgload (1.3.4-1) ... 975s Setting up r-cran-r.utils (2.12.3-1) ... 975s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 975s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 975s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 975s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 975s Setting up r-cran-rematch2 (2.1.2-2build1) ... 975s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 975s Setting up r-cran-fontawesome (0.5.2-1) ... 975s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 975s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 975s Setting up r-cran-waldo (0.5.2-1build1) ... 975s Setting up r-cran-tidyr (1.3.1-1) ... 975s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 975s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 975s Setting up r-bioc-aroma.light (3.32.0-1) ... 975s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 975s Setting up r-cran-r.cache (0.16.0-1) ... 975s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 975s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 975s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 975s Setting up r-bioc-annotationdbi (1.64.1-1) ... 975s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 975s Setting up r-cran-testthat (3.2.1-1) ... 975s Setting up r-cran-pscbs (0.66.0-2) ... 975s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 975s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 975s Setting up r-bioc-genomicalignments (1.38.2-1) ... 975s Setting up r-cran-bookdown (0.37+dfsg-1) ... 975s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ... 975s Setting up r-bioc-rtracklayer (1.62.0-1) ... 975s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 975s Setting up r-bioc-bsgenome (1.70.2-1) ... 975s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 975s Setting up r-bioc-variantannotation (1.48.1-1) ... 975s Setting up r-bioc-purecn (2.8.1+dfsg-1) ... 975s Processing triggers for libc-bin (2.39-0ubuntu2) ... 975s Processing triggers for man-db (2.12.0-3) ... 977s Processing triggers for install-info (7.1-3) ... 977s Processing triggers for tex-common (6.18) ... 978s Running updmap-sys. This may take some time... done. 978s Running mktexlsr /var/lib/texmf ... done. 978s Building format(s) --all. 1011s This may take some time... done. 1013s Reading package lists... 1013s Building dependency tree... 1013s Reading state information... 1013s Starting pkgProblemResolver with broken count: 0 1013s Starting 2 pkgProblemResolver with broken count: 0 1013s Done 1014s The following NEW packages will be installed: 1014s autopkgtest-satdep 1014s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 1014s Need to get 0 B/696 B of archives. 1014s After this operation, 0 B of additional disk space will be used. 1014s Get:1 /tmp/autopkgtest.HX7M61/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 1014s Selecting previously unselected package autopkgtest-satdep. 1014s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 126155 files and directories currently installed.) 1014s Preparing to unpack .../2-autopkgtest-satdep.deb ... 1014s Unpacking autopkgtest-satdep (0) ... 1014s Setting up autopkgtest-satdep (0) ... 1016s (Reading database ... 126155 files and directories currently installed.) 1016s Removing autopkgtest-satdep (0) ... 1016s autopkgtest [04:02:52]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 1016s autopkgtest [04:02:52]: test pkg-r-autopkgtest: [----------------------- 1017s Test: Try to load the R library PureCN 1017s 1017s R version 4.3.2 (2023-10-31) -- "Eye Holes" 1017s Copyright (C) 2023 The R Foundation for Statistical Computing 1017s Platform: x86_64-pc-linux-gnu (64-bit) 1017s 1017s R is free software and comes with ABSOLUTELY NO WARRANTY. 1017s You are welcome to redistribute it under certain conditions. 1017s Type 'license()' or 'licence()' for distribution details. 1017s 1017s R is a collaborative project with many contributors. 1017s Type 'contributors()' for more information and 1017s 'citation()' on how to cite R or R packages in publications. 1017s 1017s Type 'demo()' for some demos, 'help()' for on-line help, or 1017s 'help.start()' for an HTML browser interface to help. 1017s Type 'q()' to quit R. 1017s 1017s > library('PureCN') 1017s Loading required package: DNAcopy 1017s Loading required package: VariantAnnotation 1017s Loading required package: BiocGenerics 1019s 1019s Attaching package: ‘BiocGenerics’ 1019s 1019s The following objects are masked from ‘package:stats’: 1019s 1019s IQR, mad, sd, var, xtabs 1019s 1019s The following objects are masked from ‘package:base’: 1019s 1019s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 1019s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 1019s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 1019s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 1019s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 1019s table, tapply, union, unique, unsplit, which.max, which.min 1019s 1019s Loading required package: MatrixGenerics 1019s Loading required package: matrixStats 1019s 1019s Attaching package: ‘MatrixGenerics’ 1019s 1019s The following objects are masked from ‘package:matrixStats’: 1019s 1019s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 1019s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 1019s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 1019s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 1019s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 1019s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 1019s colWeightedMeans, colWeightedMedians, colWeightedSds, 1019s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 1019s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 1019s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 1019s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 1019s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 1019s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 1019s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 1019s rowWeightedSds, rowWeightedVars 1019s 1019s Loading required package: GenomeInfoDb 1019s Loading required package: S4Vectors 1019s Loading required package: stats4 1019s 1019s Attaching package: ‘S4Vectors’ 1019s 1019s The following object is masked from ‘package:utils’: 1019s 1019s findMatches 1019s 1019s The following objects are masked from ‘package:base’: 1019s 1019s expand.grid, I, unname 1019s 1019s Loading required package: IRanges 1019s Loading required package: GenomicRanges 1019s Loading required package: SummarizedExperiment 1019s Loading required package: Biobase 1020s Welcome to Bioconductor 1020s 1020s Vignettes contain introductory material; view with 1020s 'browseVignettes()'. To cite Bioconductor, see 1020s 'citation("Biobase")', and for packages 'citation("pkgname")'. 1020s 1020s 1020s Attaching package: ‘Biobase’ 1020s 1020s The following object is masked from ‘package:MatrixGenerics’: 1020s 1020s rowMedians 1020s 1020s The following objects are masked from ‘package:matrixStats’: 1020s 1020s anyMissing, rowMedians 1020s 1023s Loading required package: Rsamtools 1023s Loading required package: Biostrings 1023s Loading required package: XVector 1023s 1023s Attaching package: ‘Biostrings’ 1023s 1023s The following object is masked from ‘package:base’: 1023s 1023s strsplit 1023s 1029s 1029s Attaching package: ‘VariantAnnotation’ 1029s 1029s The following object is masked from ‘package:base’: 1029s 1029s tabulate 1029s 1029s > 1029s > 1029s Other tests are currently unsupported! 1029s They will be progressively added. 1030s autopkgtest [04:03:06]: test pkg-r-autopkgtest: -----------------------] 1030s autopkgtest [04:03:06]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1030s pkg-r-autopkgtest PASS 1032s autopkgtest [04:03:08]: @@@@@@@@@@@@@@@@@@@@ summary 1032s pkg-r-autopkgtest PASS 1063s Creating nova instance adt-noble-i386-r-bioc-purecn-20240322-034556-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...