0s autopkgtest [13:07:58]: starting date and time: 2024-03-21 13:07:58+0000 0s autopkgtest [13:07:58]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [13:07:58]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.q2p_2kqb/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-bioc-variantannotation --apt-upgrade r-bioc-purecn --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-bioc-variantannotation/1.48.1-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-53.secgroup --name adt-noble-i386-r-bioc-purecn-20240321-130758-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 297s autopkgtest [13:12:55]: testbed dpkg architecture: amd64 297s autopkgtest [13:12:55]: testbed apt version: 2.7.12 298s autopkgtest [13:12:56]: test architecture: i386 298s autopkgtest [13:12:56]: @@@@@@@@@@@@@@@@@@@@ test bed setup 298s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 298s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3818 kB] 298s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 298s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 298s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 298s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [460 kB] 298s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [697 kB] 298s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 298s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 298s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 298s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 298s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1281 kB] 298s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4242 kB] 298s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 298s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 298s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 298s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 301s Fetched 11.3 MB in 2s (7055 kB/s) 302s Reading package lists... 304s Reading package lists... 304s Building dependency tree... 304s Reading state information... 304s Calculating upgrade... 304s The following packages will be upgraded: 304s debianutils linux-firmware 304s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 304s Need to get 476 MB of archives. 304s After this operation, 5724 kB of additional disk space will be used. 304s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.17 [89.8 kB] 304s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-firmware amd64 20240318.git3b128b60-0ubuntu1 [475 MB] 308s Fetched 476 MB in 3s (138 MB/s) 308s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 308s Preparing to unpack .../debianutils_5.17_amd64.deb ... 308s Unpacking debianutils (5.17) over (5.16) ... 309s Setting up debianutils (5.17) ... 309s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 309s Preparing to unpack .../linux-firmware_20240318.git3b128b60-0ubuntu1_amd64.deb ... 309s Unpacking linux-firmware (20240318.git3b128b60-0ubuntu1) over (20240202.git36777504-0ubuntu1) ... 312s Setting up linux-firmware (20240318.git3b128b60-0ubuntu1) ... 312s Processing triggers for man-db (2.12.0-3) ... 313s Processing triggers for initramfs-tools (0.142ubuntu20) ... 313s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 313s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 321s Reading package lists... 321s Building dependency tree... 321s Reading state information... 321s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 322s sh: Attempting to set up Debian/Ubuntu apt sources automatically 322s sh: Distribution appears to be Ubuntu 323s Reading package lists... 323s Building dependency tree... 323s Reading state information... 323s eatmydata is already the newest version (131-1). 323s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 323s Reading package lists... 324s Building dependency tree... 324s Reading state information... 324s dbus is already the newest version (1.14.10-4ubuntu1). 324s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 324s Reading package lists... 324s Building dependency tree... 324s Reading state information... 325s rng-tools-debian is already the newest version (2.4). 325s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 325s Reading package lists... 325s Building dependency tree... 325s Reading state information... 325s The following packages will be REMOVED: 325s cloud-init* python3-configobj* python3-debconf* 326s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 326s After this operation, 3252 kB disk space will be freed. 326s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 326s Removing cloud-init (24.1.1-0ubuntu1) ... 326s Removing python3-configobj (5.0.8-3) ... 327s Removing python3-debconf (1.5.86) ... 327s Processing triggers for man-db (2.12.0-3) ... 327s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71476 files and directories currently installed.) 327s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 328s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 328s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 328s invoke-rc.d: policy-rc.d denied execution of try-restart. 328s Reading package lists... 328s Building dependency tree... 328s Reading state information... 328s linux-generic is already the newest version (6.8.0-11.11+1). 328s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 328s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 328s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 328s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 331s Reading package lists... 331s Reading package lists... 331s Building dependency tree... 331s Reading state information... 331s Calculating upgrade... 331s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 331s Reading package lists... 332s Building dependency tree... 332s Reading state information... 332s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 332s autopkgtest [13:13:30]: rebooting testbed after setup commands that affected boot 487s autopkgtest [13:16:05]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 488s autopkgtest [13:16:06]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-purecn 489s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (dsc) [2494 B] 489s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (tar) [5486 kB] 489s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (diff) [6412 B] 490s gpgv: Signature made Fri Dec 1 10:51:26 2023 UTC 490s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 490s gpgv: issuer "tillea@rki.de" 490s gpgv: Can't check signature: No public key 490s dpkg-source: warning: cannot verify inline signature for ./r-bioc-purecn_2.8.1+dfsg-1.dsc: no acceptable signature found 490s autopkgtest [13:16:08]: testing package r-bioc-purecn version 2.8.1+dfsg-1 492s autopkgtest [13:16:10]: build not needed 495s autopkgtest [13:16:13]: test pkg-r-autopkgtest: preparing testbed 501s Note, using file '/tmp/autopkgtest.wUkdmD/1-autopkgtest-satdep.dsc' to get the build dependencies 501s Reading package lists... 501s Building dependency tree... 501s Reading state information... 502s Starting pkgProblemResolver with broken count: 0 502s Starting 2 pkgProblemResolver with broken count: 0 502s Done 502s The following NEW packages will be installed: 502s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 502s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 502s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 502s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 502s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 502s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu hdf5-helpers 502s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 502s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 502s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 502s libcrypt-dev libcurl4-openssl-dev libdatrie1 libdeflate0 libfontconfig1 502s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 502s libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev 502s libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 502s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 502s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 502s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 502s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 502s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 502s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 502s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 502s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 502s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 502s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 502s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 502s libpotrace0 libptexenc1 libquadmath0 libreadline-dev libsharpyuv0 libsm6 502s libsnappy1v5 libssl-dev libstdc++-13-dev libsynctex2 libsz2 libtcl8.6 502s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 502s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 502s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 502s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 502s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 502s r-base-dev r-bioc-annotationdbi r-bioc-aroma.light r-bioc-biobase 502s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 502s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 502s r-bioc-delayedarray r-bioc-dnacopy r-bioc-genomeinfodb 502s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 502s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 502s r-bioc-org.hs.eg.db r-bioc-purecn r-bioc-rhdf5 r-bioc-rhdf5filters 502s r-bioc-rhdf5lib r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 502s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 502s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 502s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 502s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 502s r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 502s r-cran-cli r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-covr 502s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi 502s r-cran-dbplyr r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr 502s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap 502s r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 502s r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-generics 502s r-cran-getopt r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gridextra 502s r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv 502s r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr 502s r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval 502s r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-magrittr 502s r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mclust 502s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 502s r-cran-openssl r-cran-optparse r-cran-parallelly r-cran-pillar 502s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 502s r-cran-plogr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx 502s r-cran-progress r-cran-promises r-cran-ps r-cran-pscbs r-cran-purrr 502s r-cran-r.cache r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 502s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rematch2 502s r-cran-restfulr r-cran-rex r-cran-rjson r-cran-rlang r-cran-rmarkdown 502s r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-scales r-cran-shiny 502s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys 502s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 502s r-cran-utf8 r-cran-vctrs r-cran-vgam r-cran-viridislite r-cran-waldo 502s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 502s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 502s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 502s zlib1g-dev 502s 0 upgraded, 343 newly installed, 0 to remove and 0 not upgraded. 502s Need to get 557 MB of archives. 502s After this operation, 1850 MB of additional disk space will be used. 502s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 502s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 503s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 503s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 503s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 503s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 503s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 503s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 503s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 503s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 503s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 503s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 503s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 503s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 503s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 503s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 503s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 503s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 503s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 503s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 503s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 503s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 503s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 503s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 504s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 504s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 504s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 504s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 504s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 504s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 504s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 504s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 504s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 504s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 504s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 504s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 504s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 504s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 504s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 504s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 504s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 504s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 504s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 504s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 504s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 504s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 504s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 504s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 504s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 504s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 504s Get:51 http://ftpmaster.internal/ubuntu noble/universe amd64 hdf5-helpers amd64 1.10.10+repack-3ubuntu1 [15.5 kB] 504s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 504s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 504s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 504s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 504s Get:56 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 504s Get:57 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 504s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 504s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 504s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libsnappy1v5 amd64 1.1.10-1 [28.4 kB] 504s Get:61 http://ftpmaster.internal/ubuntu noble/universe amd64 libblosc1 amd64 1.21.5+ds-1 [36.5 kB] 504s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 505s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 505s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 505s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 505s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 505s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 505s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 505s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 505s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libcurl4-openssl-dev amd64 8.5.0-2ubuntu2 [446 kB] 505s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 505s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 505s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 505s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 505s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 505s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 505s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-cpp-103-1 amd64 1.10.10+repack-3ubuntu1 [128 kB] 505s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-fortran-102 amd64 1.10.10+repack-3ubuntu1 [86.4 kB] 505s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB] 505s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-fortran-100 amd64 1.10.10+repack-3ubuntu1 [32.5 kB] 505s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-cpp-100 amd64 1.10.10+repack-3ubuntu1 [11.0 kB] 505s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 505s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 505s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 505s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 505s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 505s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 505s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec-dev amd64 1.1.2-1 [19.5 kB] 505s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libssl-dev amd64 3.0.10-1ubuntu4 [2400 kB] 505s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-dev amd64 1.10.10+repack-3ubuntu1 [2826 kB] 505s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 505s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 505s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 505s Get:94 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 505s Get:95 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 505s Get:96 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 505s Get:97 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 505s Get:98 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 505s Get:99 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 505s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 505s Get:101 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 505s Get:102 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 505s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 505s Get:104 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 505s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 505s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 505s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 505s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 505s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 505s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 505s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 505s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 505s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 505s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 505s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 505s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 505s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 505s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 505s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 505s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 505s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 505s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 505s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 505s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 505s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 505s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 505s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 505s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 505s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 505s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 505s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 505s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 505s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 505s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 505s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 505s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 505s Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 505s Get:138 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 506s Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 506s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 506s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 506s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 506s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 506s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 506s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 506s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 506s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 506s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 506s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 506s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 506s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 506s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 506s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 507s Get:154 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 507s Get:155 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 507s Get:156 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 507s Get:157 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 507s Get:158 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 507s Get:159 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 507s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 507s Get:161 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 507s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 507s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 507s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 507s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 507s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 507s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 507s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 507s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 507s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 507s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 507s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 507s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 507s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 507s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 507s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 507s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 507s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 507s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 507s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 507s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 507s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 507s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 507s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 507s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 507s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 507s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 507s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 507s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 507s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 507s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 507s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 507s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 507s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 507s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 507s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 507s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 507s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 507s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 507s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 507s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 507s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 508s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 508s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.oo all 1.26.0-1 [955 kB] 508s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.utils all 2.12.3-1 [1386 kB] 508s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 508s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-aroma.light all 3.32.0-1 [576 kB] 508s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 508s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 508s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 508s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 508s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 508s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 508s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 508s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 508s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 508s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 508s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 508s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 508s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 508s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 508s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 508s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 508s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 508s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 508s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 508s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 508s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 508s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 508s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 508s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 508s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 508s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 508s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 508s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 508s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 508s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 508s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 508s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 508s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 508s Get:241 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 508s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 508s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 508s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 508s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 508s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 508s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 508s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 508s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 508s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 508s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 508s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 508s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 508s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 508s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 508s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 508s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 508s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 508s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 508s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 508s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 508s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 508s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 508s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 508s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 508s Get:266 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 508s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 508s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 509s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 509s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 509s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 509s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 509s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 509s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 509s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 509s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 509s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 509s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 509s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 509s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 509s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 509s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 509s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 509s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 509s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 509s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 509s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 509s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 509s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 509s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 509s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 509s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 509s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 509s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-dnacopy amd64 1.76.0-1 [380 kB] 509s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 509s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB] 510s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-variantannotation amd64 1.48.1-1 [3527 kB] 510s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 510s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-data.table amd64 1.14.10+dfsg-1 [1837 kB] 510s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 510s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 510s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 510s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 510s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 510s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 510s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 510s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 510s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 510s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 510s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 510s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 510s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 510s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vgam amd64 1.1-9-1 [7312 kB] 510s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mclust amd64 6.0.1-1 [3913 kB] 510s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5lib amd64 1.24.2+dfsg-1 [96.2 kB] 510s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5filters amd64 1.14.1+dfsg-3 [136 kB] 510s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5 amd64 2.46.1+dfsg-1 [808 kB] 510s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-purecn all 2.8.1+dfsg-1 [6042 kB] 510s Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 510s Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 510s Get:321 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 510s Get:322 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 510s Get:323 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 510s Get:324 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rex all 1.2.1-1 [129 kB] 510s Get:325 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 510s Get:326 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 510s Get:327 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 510s Get:328 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-globals all 0.16.2-1 [117 kB] 510s Get:329 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 510s Get:330 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-parallelly amd64 1.37.1-1 [365 kB] 510s Get:331 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 510s Get:332 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-getopt all 1.20.4-1 [38.4 kB] 510s Get:333 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-markdown all 1.12+dfsg-1 [179 kB] 510s Get:334 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-optparse all 1.7.4-1 [81.6 kB] 510s Get:335 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 510s Get:336 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 510s Get:337 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 510s Get:338 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 510s Get:339 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.cache all 0.16.0-1 [113 kB] 510s Get:340 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pscbs all 0.66.0-2 [4345 kB] 510s Get:341 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 510s Get:342 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 510s Get:343 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 511s Preconfiguring packages ... 511s Fetched 557 MB in 8s (70.0 MB/s) 511s Selecting previously unselected package libc-dev-bin. 511s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71421 files and directories currently installed.) 511s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 511s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 511s Selecting previously unselected package linux-libc-dev:amd64. 511s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 511s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 512s Selecting previously unselected package libcrypt-dev:amd64. 512s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 512s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 512s Selecting previously unselected package libtirpc-dev:amd64. 512s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 512s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 512s Selecting previously unselected package libnsl-dev:amd64. 512s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 512s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 512s Selecting previously unselected package rpcsvc-proto. 512s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 512s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 512s Selecting previously unselected package libc6-dev:amd64. 512s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 512s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 512s Selecting previously unselected package libisl23:amd64. 512s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 512s Unpacking libisl23:amd64 (0.26-3) ... 512s Selecting previously unselected package libmpc3:amd64. 512s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 512s Unpacking libmpc3:amd64 (1.3.1-1) ... 512s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 512s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 512s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 512s Selecting previously unselected package cpp-13. 512s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 512s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 512s Selecting previously unselected package cpp-x86-64-linux-gnu. 512s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 512s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 512s Selecting previously unselected package cpp. 512s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 512s Unpacking cpp (4:13.2.0-7ubuntu1) ... 512s Selecting previously unselected package libcc1-0:amd64. 512s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 512s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 512s Selecting previously unselected package libgomp1:amd64. 512s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 512s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 512s Selecting previously unselected package libitm1:amd64. 512s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 512s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 512s Selecting previously unselected package libatomic1:amd64. 512s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 512s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 512s Selecting previously unselected package libasan8:amd64. 512s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 512s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 513s Selecting previously unselected package liblsan0:amd64. 513s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 513s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 513s Selecting previously unselected package libtsan2:amd64. 513s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 513s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 513s Selecting previously unselected package libubsan1:amd64. 513s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 513s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 513s Selecting previously unselected package libhwasan0:amd64. 513s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 513s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 513s Selecting previously unselected package libquadmath0:amd64. 513s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 513s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 513s Selecting previously unselected package libgcc-13-dev:amd64. 513s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 513s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 513s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 513s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 513s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 513s Selecting previously unselected package gcc-13. 513s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 513s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 513s Selecting previously unselected package gcc-x86-64-linux-gnu. 513s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 513s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 513s Selecting previously unselected package gcc. 513s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 513s Unpacking gcc (4:13.2.0-7ubuntu1) ... 513s Selecting previously unselected package libstdc++-13-dev:amd64. 513s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 513s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 514s Selecting previously unselected package g++-13-x86-64-linux-gnu. 514s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 514s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 514s Selecting previously unselected package g++-13. 514s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 514s Unpacking g++-13 (13.2.0-17ubuntu2) ... 514s Selecting previously unselected package g++-x86-64-linux-gnu. 514s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 514s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 514s Selecting previously unselected package g++. 514s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 514s Unpacking g++ (4:13.2.0-7ubuntu1) ... 514s Selecting previously unselected package build-essential. 514s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 514s Unpacking build-essential (12.10ubuntu1) ... 514s Selecting previously unselected package dctrl-tools. 514s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 514s Unpacking dctrl-tools (2.24-3build2) ... 514s Selecting previously unselected package fonts-dejavu-mono. 514s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 514s Unpacking fonts-dejavu-mono (2.37-8) ... 514s Selecting previously unselected package fonts-dejavu-core. 514s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 514s Unpacking fonts-dejavu-core (2.37-8) ... 514s Selecting previously unselected package fontconfig-config. 514s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 514s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 514s Selecting previously unselected package libfontconfig1:amd64. 514s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 514s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 514s Selecting previously unselected package fontconfig. 514s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 514s Unpacking fontconfig (2.15.0-1ubuntu1) ... 514s Selecting previously unselected package fonts-font-awesome. 514s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 514s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 514s Selecting previously unselected package fonts-glyphicons-halflings. 514s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 514s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 514s Selecting previously unselected package fonts-lmodern. 514s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 514s Unpacking fonts-lmodern (2.005-1) ... 515s Selecting previously unselected package fonts-mathjax. 515s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 515s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 515s Selecting previously unselected package libgfortran5:amd64. 515s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 515s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 515s Selecting previously unselected package libgfortran-13-dev:amd64. 515s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 515s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 515s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 515s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 515s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 515s Selecting previously unselected package gfortran-13. 515s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 515s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 515s Selecting previously unselected package gfortran-x86-64-linux-gnu. 515s Preparing to unpack .../048-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 515s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 515s Selecting previously unselected package gfortran. 515s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 515s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 515s Selecting previously unselected package hdf5-helpers. 515s Preparing to unpack .../050-hdf5-helpers_1.10.10+repack-3ubuntu1_amd64.deb ... 515s Unpacking hdf5-helpers (1.10.10+repack-3ubuntu1) ... 515s Selecting previously unselected package icu-devtools. 515s Preparing to unpack .../051-icu-devtools_74.2-1ubuntu1_amd64.deb ... 515s Unpacking icu-devtools (74.2-1ubuntu1) ... 515s Selecting previously unselected package javascript-common. 515s Preparing to unpack .../052-javascript-common_11+nmu1_all.deb ... 515s Unpacking javascript-common (11+nmu1) ... 515s Selecting previously unselected package libaec0:amd64. 515s Preparing to unpack .../053-libaec0_1.1.2-1_amd64.deb ... 515s Unpacking libaec0:amd64 (1.1.2-1) ... 515s Selecting previously unselected package libio-string-perl. 515s Preparing to unpack .../054-libio-string-perl_1.08-4_all.deb ... 515s Unpacking libio-string-perl (1.08-4) ... 515s Selecting previously unselected package liblatex-tounicode-perl. 515s Preparing to unpack .../055-liblatex-tounicode-perl_0.54-2_all.deb ... 515s Unpacking liblatex-tounicode-perl (0.54-2) ... 515s Selecting previously unselected package libbibtex-parser-perl. 515s Preparing to unpack .../056-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 515s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 515s Selecting previously unselected package libblas3:amd64. 515s Preparing to unpack .../057-libblas3_3.12.0-3_amd64.deb ... 515s Unpacking libblas3:amd64 (3.12.0-3) ... 515s Selecting previously unselected package libblas-dev:amd64. 515s Preparing to unpack .../058-libblas-dev_3.12.0-3_amd64.deb ... 515s Unpacking libblas-dev:amd64 (3.12.0-3) ... 515s Selecting previously unselected package libsnappy1v5:amd64. 515s Preparing to unpack .../059-libsnappy1v5_1.1.10-1_amd64.deb ... 515s Unpacking libsnappy1v5:amd64 (1.1.10-1) ... 516s Selecting previously unselected package libblosc1:amd64. 516s Preparing to unpack .../060-libblosc1_1.21.5+ds-1_amd64.deb ... 516s Unpacking libblosc1:amd64 (1.21.5+ds-1) ... 516s Selecting previously unselected package libboost1.83-dev:amd64. 516s Preparing to unpack .../061-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 516s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 518s Selecting previously unselected package libboost-dev:amd64. 518s Preparing to unpack .../062-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 518s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ... 518s Selecting previously unselected package libbz2-dev:amd64. 518s Preparing to unpack .../063-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 518s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 518s Selecting previously unselected package libpixman-1-0:amd64. 518s Preparing to unpack .../064-libpixman-1-0_0.42.2-1_amd64.deb ... 518s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 518s Selecting previously unselected package libxcb-render0:amd64. 518s Preparing to unpack .../065-libxcb-render0_1.15-1_amd64.deb ... 518s Unpacking libxcb-render0:amd64 (1.15-1) ... 518s Selecting previously unselected package libxcb-shm0:amd64. 518s Preparing to unpack .../066-libxcb-shm0_1.15-1_amd64.deb ... 518s Unpacking libxcb-shm0:amd64 (1.15-1) ... 518s Selecting previously unselected package libxrender1:amd64. 518s Preparing to unpack .../067-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 518s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 518s Selecting previously unselected package libcairo2:amd64. 518s Preparing to unpack .../068-libcairo2_1.18.0-1_amd64.deb ... 518s Unpacking libcairo2:amd64 (1.18.0-1) ... 518s Selecting previously unselected package libcurl4-openssl-dev:amd64. 518s Preparing to unpack .../069-libcurl4-openssl-dev_8.5.0-2ubuntu2_amd64.deb ... 518s Unpacking libcurl4-openssl-dev:amd64 (8.5.0-2ubuntu2) ... 518s Selecting previously unselected package libdatrie1:amd64. 518s Preparing to unpack .../070-libdatrie1_0.2.13-3_amd64.deb ... 518s Unpacking libdatrie1:amd64 (0.2.13-3) ... 518s Selecting previously unselected package libdeflate0:amd64. 518s Preparing to unpack .../071-libdeflate0_1.19-1_amd64.deb ... 518s Unpacking libdeflate0:amd64 (1.19-1) ... 518s Selecting previously unselected package libgraphite2-3:amd64. 518s Preparing to unpack .../072-libgraphite2-3_1.3.14-2_amd64.deb ... 518s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 518s Selecting previously unselected package libharfbuzz0b:amd64. 518s Preparing to unpack .../073-libharfbuzz0b_8.3.0-2_amd64.deb ... 518s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 518s Selecting previously unselected package libsz2:amd64. 518s Preparing to unpack .../074-libsz2_1.1.2-1_amd64.deb ... 518s Unpacking libsz2:amd64 (1.1.2-1) ... 518s Selecting previously unselected package libhdf5-103-1:amd64. 518s Preparing to unpack .../075-libhdf5-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 518s Unpacking libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 519s Selecting previously unselected package libhdf5-cpp-103-1:amd64. 519s Preparing to unpack .../076-libhdf5-cpp-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 519s Unpacking libhdf5-cpp-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 519s Selecting previously unselected package libhdf5-fortran-102:amd64. 519s Preparing to unpack .../077-libhdf5-fortran-102_1.10.10+repack-3ubuntu1_amd64.deb ... 519s Unpacking libhdf5-fortran-102:amd64 (1.10.10+repack-3ubuntu1) ... 519s Selecting previously unselected package libhdf5-hl-100:amd64. 519s Preparing to unpack .../078-libhdf5-hl-100_1.10.10+repack-3ubuntu1_amd64.deb ... 519s Unpacking libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 519s Selecting previously unselected package libhdf5-hl-fortran-100:amd64. 519s Preparing to unpack .../079-libhdf5-hl-fortran-100_1.10.10+repack-3ubuntu1_amd64.deb ... 519s Unpacking libhdf5-hl-fortran-100:amd64 (1.10.10+repack-3ubuntu1) ... 519s Selecting previously unselected package libhdf5-hl-cpp-100:amd64. 519s Preparing to unpack .../080-libhdf5-hl-cpp-100_1.10.10+repack-3ubuntu1_amd64.deb ... 519s Unpacking libhdf5-hl-cpp-100:amd64 (1.10.10+repack-3ubuntu1) ... 519s Selecting previously unselected package zlib1g-dev:amd64. 519s Preparing to unpack .../081-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 519s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 519s Selecting previously unselected package libjpeg-turbo8:amd64. 519s Preparing to unpack .../082-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 519s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 519s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 519s Preparing to unpack .../083-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 519s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 519s Selecting previously unselected package libjpeg8:amd64. 519s Preparing to unpack .../084-libjpeg8_8c-2ubuntu11_amd64.deb ... 519s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 519s Selecting previously unselected package libjpeg8-dev:amd64. 519s Preparing to unpack .../085-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 519s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 519s Selecting previously unselected package libjpeg-dev:amd64. 519s Preparing to unpack .../086-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 519s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 519s Selecting previously unselected package libaec-dev:amd64. 519s Preparing to unpack .../087-libaec-dev_1.1.2-1_amd64.deb ... 519s Unpacking libaec-dev:amd64 (1.1.2-1) ... 519s Selecting previously unselected package libssl-dev:amd64. 519s Preparing to unpack .../088-libssl-dev_3.0.10-1ubuntu4_amd64.deb ... 519s Unpacking libssl-dev:amd64 (3.0.10-1ubuntu4) ... 519s Selecting previously unselected package libhdf5-dev. 519s Preparing to unpack .../089-libhdf5-dev_1.10.10+repack-3ubuntu1_amd64.deb ... 519s Unpacking libhdf5-dev (1.10.10+repack-3ubuntu1) ... 519s Selecting previously unselected package x11-common. 519s Preparing to unpack .../090-x11-common_1%3a7.7+23ubuntu2_all.deb ... 519s Unpacking x11-common (1:7.7+23ubuntu2) ... 519s Selecting previously unselected package libice6:amd64. 519s Preparing to unpack .../091-libice6_2%3a1.0.10-1build2_amd64.deb ... 519s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 519s Selecting previously unselected package libicu-dev:amd64. 519s Preparing to unpack .../092-libicu-dev_74.2-1ubuntu1_amd64.deb ... 519s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 520s Selecting previously unselected package libjs-bootstrap. 520s Preparing to unpack .../093-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 520s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 520s Selecting previously unselected package libjs-popper.js. 520s Preparing to unpack .../094-libjs-popper.js_1.16.1+ds-6_all.deb ... 520s Unpacking libjs-popper.js (1.16.1+ds-6) ... 520s Selecting previously unselected package libjs-bootstrap4. 520s Preparing to unpack .../095-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 520s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 520s Selecting previously unselected package libjs-d3. 520s Preparing to unpack .../096-libjs-d3_3.5.17-4_all.deb ... 520s Unpacking libjs-d3 (3.5.17-4) ... 520s Selecting previously unselected package libjs-es5-shim. 520s Preparing to unpack .../097-libjs-es5-shim_4.6.7-2_all.deb ... 520s Unpacking libjs-es5-shim (4.6.7-2) ... 520s Selecting previously unselected package libjs-highlight.js. 520s Preparing to unpack .../098-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 520s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 520s Selecting previously unselected package libjs-jquery. 520s Preparing to unpack .../099-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 520s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 520s Selecting previously unselected package libjs-jquery-datatables. 520s Preparing to unpack .../100-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 520s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 520s Selecting previously unselected package libjs-sifter.js. 520s Preparing to unpack .../101-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 520s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 520s Selecting previously unselected package libjs-microplugin.js. 520s Preparing to unpack .../102-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 520s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 520s Selecting previously unselected package libjs-jquery-selectize.js. 520s Preparing to unpack .../103-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 520s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 520s Selecting previously unselected package libjs-jquery-ui. 520s Preparing to unpack .../104-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 520s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 520s Selecting previously unselected package libjs-json. 520s Preparing to unpack .../105-libjs-json_0~20221030+~1.0.8-1_all.deb ... 520s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 520s Selecting previously unselected package libjs-lunr. 520s Preparing to unpack .../106-libjs-lunr_2.3.9~dfsg-2_all.deb ... 520s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 520s Selecting previously unselected package libjs-prettify. 520s Preparing to unpack .../107-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 520s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 520s Selecting previously unselected package libkpathsea6:amd64. 520s Preparing to unpack .../108-libkpathsea6_2023.20230311.66589-9_amd64.deb ... 520s Unpacking libkpathsea6:amd64 (2023.20230311.66589-9) ... 520s Selecting previously unselected package liblapack3:amd64. 520s Preparing to unpack .../109-liblapack3_3.12.0-3_amd64.deb ... 520s Unpacking liblapack3:amd64 (3.12.0-3) ... 520s Selecting previously unselected package liblapack-dev:amd64. 520s Preparing to unpack .../110-liblapack-dev_3.12.0-3_amd64.deb ... 520s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 521s Selecting previously unselected package liblerc4:amd64. 521s Preparing to unpack .../111-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 521s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 521s Selecting previously unselected package liblua5.4-0:amd64. 521s Preparing to unpack .../112-liblua5.4-0_5.4.6-3_amd64.deb ... 521s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 521s Selecting previously unselected package libncurses-dev:amd64. 521s Preparing to unpack .../113-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 521s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 521s Selecting previously unselected package libthai-data. 521s Preparing to unpack .../114-libthai-data_0.1.29-2_all.deb ... 521s Unpacking libthai-data (0.1.29-2) ... 521s Selecting previously unselected package libthai0:amd64. 521s Preparing to unpack .../115-libthai0_0.1.29-2_amd64.deb ... 521s Unpacking libthai0:amd64 (0.1.29-2) ... 521s Selecting previously unselected package libpango-1.0-0:amd64. 521s Preparing to unpack .../116-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 521s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 521s Selecting previously unselected package libpangoft2-1.0-0:amd64. 521s Preparing to unpack .../117-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 521s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 521s Selecting previously unselected package libpangocairo-1.0-0:amd64. 521s Preparing to unpack .../118-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 521s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 521s Selecting previously unselected package libpaper1:amd64. 521s Preparing to unpack .../119-libpaper1_1.1.29_amd64.deb ... 521s Unpacking libpaper1:amd64 (1.1.29) ... 521s Selecting previously unselected package libpaper-utils. 521s Preparing to unpack .../120-libpaper-utils_1.1.29_amd64.deb ... 521s Unpacking libpaper-utils (1.1.29) ... 521s Selecting previously unselected package libpcre2-16-0:amd64. 521s Preparing to unpack .../121-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 521s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 521s Selecting previously unselected package libpcre2-32-0:amd64. 521s Preparing to unpack .../122-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 521s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 521s Selecting previously unselected package libpcre2-posix3:amd64. 521s Preparing to unpack .../123-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 521s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 521s Selecting previously unselected package libpcre2-dev:amd64. 521s Preparing to unpack .../124-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 521s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 521s Selecting previously unselected package libpkgconf3:amd64. 521s Preparing to unpack .../125-libpkgconf3_1.8.1-2_amd64.deb ... 521s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 521s Selecting previously unselected package libpng-dev:amd64. 521s Preparing to unpack .../126-libpng-dev_1.6.43-1_amd64.deb ... 521s Unpacking libpng-dev:amd64 (1.6.43-1) ... 521s Selecting previously unselected package libpotrace0:amd64. 521s Preparing to unpack .../127-libpotrace0_1.16-2_amd64.deb ... 521s Unpacking libpotrace0:amd64 (1.16-2) ... 521s Selecting previously unselected package libptexenc1:amd64. 521s Preparing to unpack .../128-libptexenc1_2023.20230311.66589-9_amd64.deb ... 521s Unpacking libptexenc1:amd64 (2023.20230311.66589-9) ... 521s Selecting previously unselected package libreadline-dev:amd64. 521s Preparing to unpack .../129-libreadline-dev_8.2-3_amd64.deb ... 521s Unpacking libreadline-dev:amd64 (8.2-3) ... 521s Selecting previously unselected package libsharpyuv0:amd64. 521s Preparing to unpack .../130-libsharpyuv0_1.3.2-0.4_amd64.deb ... 521s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 521s Selecting previously unselected package libsm6:amd64. 521s Preparing to unpack .../131-libsm6_2%3a1.2.3-1build2_amd64.deb ... 521s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 521s Selecting previously unselected package libsynctex2:amd64. 521s Preparing to unpack .../132-libsynctex2_2023.20230311.66589-9_amd64.deb ... 521s Unpacking libsynctex2:amd64 (2023.20230311.66589-9) ... 521s Selecting previously unselected package libtcl8.6:amd64. 521s Preparing to unpack .../133-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 521s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 522s Selecting previously unselected package libteckit0:amd64. 522s Preparing to unpack .../134-libteckit0_2.5.12+ds1-1_amd64.deb ... 522s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 522s Selecting previously unselected package libtexlua53-5:amd64. 522s Preparing to unpack .../135-libtexlua53-5_2023.20230311.66589-9_amd64.deb ... 522s Unpacking libtexlua53-5:amd64 (2023.20230311.66589-9) ... 522s Selecting previously unselected package libjbig0:amd64. 522s Preparing to unpack .../136-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 522s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 522s Selecting previously unselected package libwebp7:amd64. 522s Preparing to unpack .../137-libwebp7_1.3.2-0.4_amd64.deb ... 522s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 522s Selecting previously unselected package libtiff6:amd64. 522s Preparing to unpack .../138-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 522s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 522s Selecting previously unselected package libxft2:amd64. 522s Preparing to unpack .../139-libxft2_2.3.6-1_amd64.deb ... 522s Unpacking libxft2:amd64 (2.3.6-1) ... 522s Selecting previously unselected package libxss1:amd64. 522s Preparing to unpack .../140-libxss1_1%3a1.2.3-1build2_amd64.deb ... 522s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 522s Selecting previously unselected package libtk8.6:amd64. 522s Preparing to unpack .../141-libtk8.6_8.6.13-2_amd64.deb ... 522s Unpacking libtk8.6:amd64 (8.6.13-2) ... 522s Selecting previously unselected package libxt6:amd64. 522s Preparing to unpack .../142-libxt6_1%3a1.2.1-1.1_amd64.deb ... 522s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 522s Selecting previously unselected package libxmu6:amd64. 522s Preparing to unpack .../143-libxmu6_2%3a1.1.3-3_amd64.deb ... 522s Unpacking libxmu6:amd64 (2:1.1.3-3) ... 522s Selecting previously unselected package libxpm4:amd64. 522s Preparing to unpack .../144-libxpm4_1%3a3.5.17-1_amd64.deb ... 522s Unpacking libxpm4:amd64 (1:3.5.17-1) ... 522s Selecting previously unselected package libxaw7:amd64. 522s Preparing to unpack .../145-libxaw7_2%3a1.0.14-1_amd64.deb ... 522s Unpacking libxaw7:amd64 (2:1.0.14-1) ... 522s Selecting previously unselected package libxi6:amd64. 522s Preparing to unpack .../146-libxi6_2%3a1.8.1-1_amd64.deb ... 522s Unpacking libxi6:amd64 (2:1.8.1-1) ... 522s Selecting previously unselected package libzzip-0-13:amd64. 522s Preparing to unpack .../147-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... 522s Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 522s Selecting previously unselected package node-bootstrap-sass. 522s Preparing to unpack .../148-node-bootstrap-sass_3.4.3-2_all.deb ... 522s Unpacking node-bootstrap-sass (3.4.3-2) ... 522s Selecting previously unselected package node-html5shiv. 522s Preparing to unpack .../149-node-html5shiv_3.7.3+dfsg-5_all.deb ... 522s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 522s Selecting previously unselected package node-normalize.css. 522s Preparing to unpack .../150-node-normalize.css_8.0.1-5_all.deb ... 522s Unpacking node-normalize.css (8.0.1-5) ... 522s Selecting previously unselected package pandoc-data. 522s Preparing to unpack .../151-pandoc-data_3.1.3-1_all.deb ... 522s Unpacking pandoc-data (3.1.3-1) ... 522s Selecting previously unselected package pandoc. 522s Preparing to unpack .../152-pandoc_3.1.3+ds-2_amd64.deb ... 522s Unpacking pandoc (3.1.3+ds-2) ... 523s Selecting previously unselected package pkgconf-bin. 523s Preparing to unpack .../153-pkgconf-bin_1.8.1-2_amd64.deb ... 523s Unpacking pkgconf-bin (1.8.1-2) ... 523s Selecting previously unselected package pkgconf:amd64. 523s Preparing to unpack .../154-pkgconf_1.8.1-2_amd64.deb ... 523s Unpacking pkgconf:amd64 (1.8.1-2) ... 523s Selecting previously unselected package pkg-config:amd64. 523s Preparing to unpack .../155-pkg-config_1.8.1-2_amd64.deb ... 523s Unpacking pkg-config:amd64 (1.8.1-2) ... 523s Selecting previously unselected package zip. 523s Preparing to unpack .../156-zip_3.0-13_amd64.deb ... 523s Unpacking zip (3.0-13) ... 523s Selecting previously unselected package unzip. 523s Preparing to unpack .../157-unzip_6.0-28ubuntu3_amd64.deb ... 523s Unpacking unzip (6.0-28ubuntu3) ... 523s Selecting previously unselected package xdg-utils. 523s Preparing to unpack .../158-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 523s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 523s Selecting previously unselected package r-base-core. 523s Preparing to unpack .../159-r-base-core_4.3.2-1build1_amd64.deb ... 523s Unpacking r-base-core (4.3.2-1build1) ... 524s Selecting previously unselected package liblzma-dev:amd64. 524s Preparing to unpack .../160-liblzma-dev_5.4.5-0.3_amd64.deb ... 524s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 524s Selecting previously unselected package r-base-dev. 524s Preparing to unpack .../161-r-base-dev_4.3.2-1build1_all.deb ... 524s Unpacking r-base-dev (4.3.2-1build1) ... 524s Selecting previously unselected package pkg-r-autopkgtest. 524s Preparing to unpack .../162-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 524s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 524s Selecting previously unselected package r-bioc-biocgenerics. 524s Preparing to unpack .../163-r-bioc-biocgenerics_0.48.1-2_all.deb ... 524s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 524s Selecting previously unselected package r-bioc-biobase. 524s Preparing to unpack .../164-r-bioc-biobase_2.62.0-1_amd64.deb ... 524s Unpacking r-bioc-biobase (2.62.0-1) ... 524s Selecting previously unselected package r-bioc-s4vectors. 524s Preparing to unpack .../165-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 524s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 524s Selecting previously unselected package r-bioc-iranges. 524s Preparing to unpack .../166-r-bioc-iranges_2.36.0-1_amd64.deb ... 524s Unpacking r-bioc-iranges (2.36.0-1) ... 524s Selecting previously unselected package r-cran-dbi. 524s Preparing to unpack .../167-r-cran-dbi_1.2.2-1_all.deb ... 524s Unpacking r-cran-dbi (1.2.2-1) ... 524s Selecting previously unselected package r-cran-bit. 524s Preparing to unpack .../168-r-cran-bit_4.0.5-1_amd64.deb ... 524s Unpacking r-cran-bit (4.0.5-1) ... 524s Selecting previously unselected package r-cran-bit64. 524s Preparing to unpack .../169-r-cran-bit64_4.0.5-1_amd64.deb ... 524s Unpacking r-cran-bit64 (4.0.5-1) ... 524s Selecting previously unselected package r-cran-rlang. 524s Preparing to unpack .../170-r-cran-rlang_1.1.3-1_amd64.deb ... 524s Unpacking r-cran-rlang (1.1.3-1) ... 524s Selecting previously unselected package r-cran-cli. 524s Preparing to unpack .../171-r-cran-cli_3.6.2-1_amd64.deb ... 524s Unpacking r-cran-cli (3.6.2-1) ... 524s Selecting previously unselected package r-cran-glue. 524s Preparing to unpack .../172-r-cran-glue_1.7.0-1_amd64.deb ... 525s Unpacking r-cran-glue (1.7.0-1) ... 525s Selecting previously unselected package r-cran-lifecycle. 525s Preparing to unpack .../173-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 525s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 525s Selecting previously unselected package r-cran-vctrs. 525s Preparing to unpack .../174-r-cran-vctrs_0.6.5-1_amd64.deb ... 525s Unpacking r-cran-vctrs (0.6.5-1) ... 525s Selecting previously unselected package r-cran-blob. 525s Preparing to unpack .../175-r-cran-blob_1.2.4-1_all.deb ... 525s Unpacking r-cran-blob (1.2.4-1) ... 525s Selecting previously unselected package r-cran-fastmap. 525s Preparing to unpack .../176-r-cran-fastmap_1.1.1-1_amd64.deb ... 525s Unpacking r-cran-fastmap (1.1.1-1) ... 525s Selecting previously unselected package r-cran-cachem. 525s Preparing to unpack .../177-r-cran-cachem_1.0.8-1_amd64.deb ... 525s Unpacking r-cran-cachem (1.0.8-1) ... 525s Selecting previously unselected package r-cran-memoise. 525s Preparing to unpack .../178-r-cran-memoise_2.0.1-1_all.deb ... 525s Unpacking r-cran-memoise (2.0.1-1) ... 525s Selecting previously unselected package r-cran-pkgconfig. 525s Preparing to unpack .../179-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 525s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 525s Selecting previously unselected package r-cran-plogr. 525s Preparing to unpack .../180-r-cran-plogr_0.2.0-3build1_all.deb ... 525s Unpacking r-cran-plogr (0.2.0-3build1) ... 525s Selecting previously unselected package r-cran-cpp11. 525s Preparing to unpack .../181-r-cran-cpp11_0.4.7-1_all.deb ... 525s Unpacking r-cran-cpp11 (0.4.7-1) ... 525s Selecting previously unselected package r-cran-rsqlite. 525s Preparing to unpack .../182-r-cran-rsqlite_2.3.4-1_amd64.deb ... 525s Unpacking r-cran-rsqlite (2.3.4-1) ... 525s Selecting previously unselected package r-cran-curl. 525s Preparing to unpack .../183-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 525s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 525s Selecting previously unselected package r-cran-jsonlite. 525s Preparing to unpack .../184-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 525s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 525s Selecting previously unselected package r-cran-mime. 525s Preparing to unpack .../185-r-cran-mime_0.12-1_amd64.deb ... 525s Unpacking r-cran-mime (0.12-1) ... 525s Selecting previously unselected package r-cran-sys. 525s Preparing to unpack .../186-r-cran-sys_3.4.2-1_amd64.deb ... 525s Unpacking r-cran-sys (3.4.2-1) ... 525s Selecting previously unselected package r-cran-askpass. 525s Preparing to unpack .../187-r-cran-askpass_1.2.0-1_amd64.deb ... 525s Unpacking r-cran-askpass (1.2.0-1) ... 525s Selecting previously unselected package r-cran-openssl. 525s Preparing to unpack .../188-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 525s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 525s Selecting previously unselected package r-cran-r6. 525s Preparing to unpack .../189-r-cran-r6_2.5.1-1_all.deb ... 525s Unpacking r-cran-r6 (2.5.1-1) ... 525s Selecting previously unselected package r-cran-httr. 525s Preparing to unpack .../190-r-cran-httr_1.4.7+dfsg-1_all.deb ... 525s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 525s Selecting previously unselected package r-cran-png. 525s Preparing to unpack .../191-r-cran-png_0.1-8-1_amd64.deb ... 525s Unpacking r-cran-png (0.1-8-1) ... 525s Selecting previously unselected package r-bioc-zlibbioc. 525s Preparing to unpack .../192-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 525s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 525s Selecting previously unselected package r-bioc-xvector. 525s Preparing to unpack .../193-r-bioc-xvector_0.42.0-1_amd64.deb ... 525s Unpacking r-bioc-xvector (0.42.0-1) ... 525s Selecting previously unselected package r-cran-bitops. 525s Preparing to unpack .../194-r-cran-bitops_1.0-7-1_amd64.deb ... 525s Unpacking r-cran-bitops (1.0-7-1) ... 525s Selecting previously unselected package r-cran-rcurl. 525s Preparing to unpack .../195-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 525s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 526s Selecting previously unselected package r-bioc-genomeinfodbdata. 526s Preparing to unpack .../196-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 526s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 526s Selecting previously unselected package r-bioc-genomeinfodb. 526s Preparing to unpack .../197-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 526s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 526s Selecting previously unselected package r-cran-crayon. 526s Preparing to unpack .../198-r-cran-crayon_1.5.2-1_all.deb ... 526s Unpacking r-cran-crayon (1.5.2-1) ... 526s Selecting previously unselected package r-bioc-biostrings. 526s Preparing to unpack .../199-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 526s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 526s Selecting previously unselected package r-bioc-keggrest. 526s Preparing to unpack .../200-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 526s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 526s Selecting previously unselected package r-bioc-annotationdbi. 526s Preparing to unpack .../201-r-bioc-annotationdbi_1.64.1-1_all.deb ... 526s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 526s Selecting previously unselected package r-cran-r.methodss3. 526s Preparing to unpack .../202-r-cran-r.methodss3_1.8.2-1_all.deb ... 526s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 526s Selecting previously unselected package r-cran-r.oo. 526s Preparing to unpack .../203-r-cran-r.oo_1.26.0-1_all.deb ... 526s Unpacking r-cran-r.oo (1.26.0-1) ... 526s Selecting previously unselected package r-cran-r.utils. 526s Preparing to unpack .../204-r-cran-r.utils_2.12.3-1_all.deb ... 526s Unpacking r-cran-r.utils (2.12.3-1) ... 526s Selecting previously unselected package r-cran-matrixstats. 526s Preparing to unpack .../205-r-cran-matrixstats_1.2.0-1_amd64.deb ... 526s Unpacking r-cran-matrixstats (1.2.0-1) ... 526s Selecting previously unselected package r-bioc-aroma.light. 526s Preparing to unpack .../206-r-bioc-aroma.light_3.32.0-1_all.deb ... 526s Unpacking r-bioc-aroma.light (3.32.0-1) ... 526s Selecting previously unselected package r-cran-generics. 526s Preparing to unpack .../207-r-cran-generics_0.1.3-1_all.deb ... 526s Unpacking r-cran-generics (0.1.3-1) ... 526s Selecting previously unselected package r-cran-magrittr. 526s Preparing to unpack .../208-r-cran-magrittr_2.0.3-1_amd64.deb ... 526s Unpacking r-cran-magrittr (2.0.3-1) ... 526s Selecting previously unselected package r-cran-fansi. 526s Preparing to unpack .../209-r-cran-fansi_1.0.5-1_amd64.deb ... 526s Unpacking r-cran-fansi (1.0.5-1) ... 526s Selecting previously unselected package r-cran-utf8. 526s Preparing to unpack .../210-r-cran-utf8_1.2.4-1_amd64.deb ... 526s Unpacking r-cran-utf8 (1.2.4-1) ... 526s Selecting previously unselected package r-cran-pillar. 526s Preparing to unpack .../211-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 526s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 526s Selecting previously unselected package r-cran-tibble. 526s Preparing to unpack .../212-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 526s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 526s Selecting previously unselected package r-cran-withr. 527s Preparing to unpack .../213-r-cran-withr_2.5.0-1_all.deb ... 527s Unpacking r-cran-withr (2.5.0-1) ... 527s Selecting previously unselected package r-cran-tidyselect. 527s Preparing to unpack .../214-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 527s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 527s Selecting previously unselected package r-cran-dplyr. 527s Preparing to unpack .../215-r-cran-dplyr_1.1.4-1_amd64.deb ... 527s Unpacking r-cran-dplyr (1.1.4-1) ... 527s Selecting previously unselected package r-cran-purrr. 527s Preparing to unpack .../216-r-cran-purrr_1.0.2-1_amd64.deb ... 527s Unpacking r-cran-purrr (1.0.2-1) ... 527s Selecting previously unselected package r-cran-stringi. 527s Preparing to unpack .../217-r-cran-stringi_1.8.3-1_amd64.deb ... 527s Unpacking r-cran-stringi (1.8.3-1) ... 527s Selecting previously unselected package r-cran-stringr. 527s Preparing to unpack .../218-r-cran-stringr_1.5.1-1_all.deb ... 527s Unpacking r-cran-stringr (1.5.1-1) ... 527s Selecting previously unselected package r-cran-tidyr. 527s Preparing to unpack .../219-r-cran-tidyr_1.3.1-1_amd64.deb ... 527s Unpacking r-cran-tidyr (1.3.1-1) ... 527s Selecting previously unselected package r-cran-dbplyr. 527s Preparing to unpack .../220-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 527s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 527s Selecting previously unselected package r-cran-filelock. 527s Preparing to unpack .../221-r-cran-filelock_1.0.3-1_amd64.deb ... 527s Unpacking r-cran-filelock (1.0.3-1) ... 527s Selecting previously unselected package r-bioc-biocfilecache. 527s Preparing to unpack .../222-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 527s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 527s Selecting previously unselected package r-bioc-biocio. 527s Preparing to unpack .../223-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 527s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 527s Selecting previously unselected package r-cran-formatr. 527s Preparing to unpack .../224-r-cran-formatr_1.14-1_all.deb ... 527s Unpacking r-cran-formatr (1.14-1) ... 527s Selecting previously unselected package r-cran-lambda.r. 527s Preparing to unpack .../225-r-cran-lambda.r_1.2.4-2build1_all.deb ... 527s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 527s Selecting previously unselected package r-cran-futile.options. 527s Preparing to unpack .../226-r-cran-futile.options_1.0.1-3build1_all.deb ... 527s Unpacking r-cran-futile.options (1.0.1-3build1) ... 527s Selecting previously unselected package r-cran-futile.logger. 527s Preparing to unpack .../227-r-cran-futile.logger_1.4.3-4build1_all.deb ... 527s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 527s Selecting previously unselected package r-cran-snow. 527s Preparing to unpack .../228-r-cran-snow_1%3a0.4.4-2_all.deb ... 527s Unpacking r-cran-snow (1:0.4.4-2) ... 527s Selecting previously unselected package r-cran-codetools. 527s Preparing to unpack .../229-r-cran-codetools_0.2-19-1_all.deb ... 527s Unpacking r-cran-codetools (0.2-19-1) ... 527s Selecting previously unselected package r-cran-bh. 527s Preparing to unpack .../230-r-cran-bh_1.84.0-1_all.deb ... 527s Unpacking r-cran-bh (1.84.0-1) ... 527s Selecting previously unselected package r-bioc-biocparallel. 527s Preparing to unpack .../231-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 527s Unpacking r-bioc-biocparallel (1.36.0-1) ... 527s Selecting previously unselected package r-cran-base64enc. 527s Preparing to unpack .../232-r-cran-base64enc_0.1-3-3_amd64.deb ... 527s Unpacking r-cran-base64enc (0.1-3-3) ... 527s Selecting previously unselected package r-cran-digest. 527s Preparing to unpack .../233-r-cran-digest_0.6.34-1_amd64.deb ... 527s Unpacking r-cran-digest (0.6.34-1) ... 527s Selecting previously unselected package r-cran-ellipsis. 527s Preparing to unpack .../234-r-cran-ellipsis_0.3.2-2_amd64.deb ... 527s Unpacking r-cran-ellipsis (0.3.2-2) ... 527s Selecting previously unselected package r-cran-htmltools. 528s Preparing to unpack .../235-r-cran-htmltools_0.5.7-1_amd64.deb ... 528s Unpacking r-cran-htmltools (0.5.7-1) ... 528s Selecting previously unselected package r-cran-evaluate. 528s Preparing to unpack .../236-r-cran-evaluate_0.23-1_all.deb ... 528s Unpacking r-cran-evaluate (0.23-1) ... 528s Selecting previously unselected package r-cran-xfun. 528s Preparing to unpack .../237-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 528s Unpacking r-cran-xfun (0.41+dfsg-1) ... 528s Selecting previously unselected package r-cran-highr. 528s Preparing to unpack .../238-r-cran-highr_0.10+dfsg-1_all.deb ... 528s Unpacking r-cran-highr (0.10+dfsg-1) ... 528s Selecting previously unselected package r-cran-yaml. 528s Preparing to unpack .../239-r-cran-yaml_2.3.8-1_amd64.deb ... 528s Unpacking r-cran-yaml (2.3.8-1) ... 528s Selecting previously unselected package libjs-mathjax. 528s Preparing to unpack .../240-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 528s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 528s Selecting previously unselected package r-cran-knitr. 528s Preparing to unpack .../241-r-cran-knitr_1.45+dfsg-1_all.deb ... 528s Unpacking r-cran-knitr (1.45+dfsg-1) ... 529s Selecting previously unselected package r-cran-jquerylib. 529s Preparing to unpack .../242-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 529s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 529s Selecting previously unselected package r-cran-fs. 529s Preparing to unpack .../243-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 529s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 529s Selecting previously unselected package r-cran-rappdirs. 529s Preparing to unpack .../244-r-cran-rappdirs_0.3.3-1_amd64.deb ... 529s Unpacking r-cran-rappdirs (0.3.3-1) ... 529s Selecting previously unselected package r-cran-sass. 529s Preparing to unpack .../245-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 529s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 529s Selecting previously unselected package r-cran-bslib. 529s Preparing to unpack .../246-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 529s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 529s Selecting previously unselected package r-cran-fontawesome. 529s Preparing to unpack .../247-r-cran-fontawesome_0.5.2-1_all.deb ... 529s Unpacking r-cran-fontawesome (0.5.2-1) ... 529s Selecting previously unselected package r-cran-tinytex. 529s Preparing to unpack .../248-r-cran-tinytex_0.49-1_all.deb ... 529s Unpacking r-cran-tinytex (0.49-1) ... 529s Selecting previously unselected package libjs-modernizr. 529s Preparing to unpack .../249-libjs-modernizr_2.6.2+ds1-5_all.deb ... 529s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 529s Selecting previously unselected package r-cran-littler. 529s Preparing to unpack .../250-r-cran-littler_0.3.19-1_amd64.deb ... 529s Unpacking r-cran-littler (0.3.19-1) ... 529s Selecting previously unselected package r-cran-pkgkitten. 529s Preparing to unpack .../251-r-cran-pkgkitten_0.2.3-1_all.deb ... 529s Unpacking r-cran-pkgkitten (0.2.3-1) ... 529s Selecting previously unselected package r-cran-rcpp. 529s Preparing to unpack .../252-r-cran-rcpp_1.0.12-1_amd64.deb ... 529s Unpacking r-cran-rcpp (1.0.12-1) ... 529s Selecting previously unselected package r-cran-later. 529s Preparing to unpack .../253-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 529s Unpacking r-cran-later (1.3.2+dfsg-1) ... 529s Selecting previously unselected package r-cran-promises. 529s Preparing to unpack .../254-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 529s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 529s Selecting previously unselected package r-cran-httpuv. 529s Preparing to unpack .../255-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 529s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 529s Selecting previously unselected package r-cran-xtable. 529s Preparing to unpack .../256-r-cran-xtable_1%3a1.8-4-2_all.deb ... 529s Unpacking r-cran-xtable (1:1.8-4-2) ... 530s Selecting previously unselected package r-cran-sourcetools. 530s Preparing to unpack .../257-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 530s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 530s Selecting previously unselected package r-cran-commonmark. 530s Preparing to unpack .../258-r-cran-commonmark_1.9.1-1_amd64.deb ... 530s Unpacking r-cran-commonmark (1.9.1-1) ... 530s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 530s Preparing to unpack .../259-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 530s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 530s Selecting previously unselected package r-cran-shiny. 530s Preparing to unpack .../260-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 530s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 530s Selecting previously unselected package r-cran-rmarkdown. 530s Preparing to unpack .../261-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 530s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 530s Selecting previously unselected package r-cran-bookdown. 530s Preparing to unpack .../262-r-cran-bookdown_0.37+dfsg-1_all.deb ... 530s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 530s Selecting previously unselected package r-cran-biocmanager. 530s Preparing to unpack .../263-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 530s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 530s Selecting previously unselected package tex-common. 530s Preparing to unpack .../264-tex-common_6.18_all.deb ... 530s Unpacking tex-common (6.18) ... 530s Selecting previously unselected package t1utils. 530s Preparing to unpack .../265-t1utils_1.41-4build2_amd64.deb ... 530s Unpacking t1utils (1.41-4build2) ... 530s Selecting previously unselected package texlive-binaries. 530s Preparing to unpack .../266-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 530s Unpacking texlive-binaries (2023.20230311.66589-9) ... 530s Selecting previously unselected package texlive-base. 530s Preparing to unpack .../267-texlive-base_2023.20240207-1_all.deb ... 530s Unpacking texlive-base (2023.20240207-1) ... 532s Selecting previously unselected package texlive-latex-base. 532s Preparing to unpack .../268-texlive-latex-base_2023.20240207-1_all.deb ... 532s Unpacking texlive-latex-base (2023.20240207-1) ... 532s Selecting previously unselected package texlive-bibtex-extra. 532s Preparing to unpack .../269-texlive-bibtex-extra_2023.20240207-1_all.deb ... 532s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 536s Selecting previously unselected package r-bioc-biocstyle. 536s Preparing to unpack .../270-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 536s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 536s Selecting previously unselected package r-cran-xml. 536s Preparing to unpack .../271-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 536s Unpacking r-cran-xml (3.99-0.16.1-1) ... 536s Selecting previously unselected package r-cran-hms. 536s Preparing to unpack .../272-r-cran-hms_1.1.3-1_all.deb ... 536s Unpacking r-cran-hms (1.1.3-1) ... 536s Selecting previously unselected package r-cran-prettyunits. 536s Preparing to unpack .../273-r-cran-prettyunits_1.2.0-1_all.deb ... 536s Unpacking r-cran-prettyunits (1.2.0-1) ... 536s Selecting previously unselected package r-cran-progress. 536s Preparing to unpack .../274-r-cran-progress_1.2.3-1_all.deb ... 536s Unpacking r-cran-progress (1.2.3-1) ... 536s Selecting previously unselected package r-cran-xml2. 536s Preparing to unpack .../275-r-cran-xml2_1.3.6-1_amd64.deb ... 536s Unpacking r-cran-xml2 (1.3.6-1) ... 536s Selecting previously unselected package r-bioc-biomart. 536s Preparing to unpack .../276-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 536s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 536s Selecting previously unselected package r-bioc-genomicranges. 536s Preparing to unpack .../277-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 536s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 536s Selecting previously unselected package r-bioc-rhtslib. 536s Preparing to unpack .../278-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 536s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 536s Selecting previously unselected package r-bioc-rsamtools. 536s Preparing to unpack .../279-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 536s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 536s Selecting previously unselected package r-bioc-matrixgenerics. 536s Preparing to unpack .../280-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 536s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 536s Selecting previously unselected package r-cran-lattice. 536s Preparing to unpack .../281-r-cran-lattice_0.22-5-1_amd64.deb ... 536s Unpacking r-cran-lattice (0.22-5-1) ... 536s Selecting previously unselected package r-cran-matrix. 536s Preparing to unpack .../282-r-cran-matrix_1.6-5-1_amd64.deb ... 536s Unpacking r-cran-matrix (1.6-5-1) ... 536s Selecting previously unselected package r-cran-abind. 536s Preparing to unpack .../283-r-cran-abind_1.4-5-2_all.deb ... 536s Unpacking r-cran-abind (1.4-5-2) ... 536s Selecting previously unselected package r-bioc-s4arrays. 536s Preparing to unpack .../284-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 536s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 536s Selecting previously unselected package r-bioc-sparsearray. 536s Preparing to unpack .../285-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 536s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 536s Selecting previously unselected package r-bioc-delayedarray. 536s Preparing to unpack .../286-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 536s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 536s Selecting previously unselected package r-bioc-summarizedexperiment. 536s Preparing to unpack .../287-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 536s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 537s Selecting previously unselected package r-bioc-genomicalignments. 537s Preparing to unpack .../288-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 537s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 537s Selecting previously unselected package r-cran-rjson. 537s Preparing to unpack .../289-r-cran-rjson_0.2.21-1_amd64.deb ... 537s Unpacking r-cran-rjson (0.2.21-1) ... 537s Selecting previously unselected package r-cran-restfulr. 537s Preparing to unpack .../290-r-cran-restfulr_0.0.15-1_amd64.deb ... 537s Unpacking r-cran-restfulr (0.0.15-1) ... 537s Selecting previously unselected package r-bioc-rtracklayer. 537s Preparing to unpack .../291-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 537s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 537s Selecting previously unselected package r-bioc-bsgenome. 537s Preparing to unpack .../292-r-bioc-bsgenome_1.70.2-1_all.deb ... 537s Unpacking r-bioc-bsgenome (1.70.2-1) ... 537s Selecting previously unselected package r-bioc-dnacopy. 537s Preparing to unpack .../293-r-bioc-dnacopy_1.76.0-1_amd64.deb ... 537s Unpacking r-bioc-dnacopy (1.76.0-1) ... 537s Selecting previously unselected package r-bioc-genomicfeatures. 537s Preparing to unpack .../294-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 537s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 537s Selecting previously unselected package r-bioc-org.hs.eg.db. 537s Preparing to unpack .../295-r-bioc-org.hs.eg.db_3.18.0-1_all.deb ... 537s Unpacking r-bioc-org.hs.eg.db (3.18.0-1) ... 539s Selecting previously unselected package r-bioc-variantannotation. 539s Preparing to unpack .../296-r-bioc-variantannotation_1.48.1-1_amd64.deb ... 539s Unpacking r-bioc-variantannotation (1.48.1-1) ... 539s Selecting previously unselected package r-cran-rcolorbrewer. 539s Preparing to unpack .../297-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 539s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 539s Selecting previously unselected package r-cran-data.table. 539s Preparing to unpack .../298-r-cran-data.table_1.14.10+dfsg-1_amd64.deb ... 539s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 539s Selecting previously unselected package r-cran-gtable. 539s Preparing to unpack .../299-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 539s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 539s Selecting previously unselected package r-cran-isoband. 539s Preparing to unpack .../300-r-cran-isoband_0.2.7-1_amd64.deb ... 539s Unpacking r-cran-isoband (0.2.7-1) ... 539s Selecting previously unselected package r-cran-mass. 539s Preparing to unpack .../301-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 539s Unpacking r-cran-mass (7.3-60.0.1-1) ... 539s Selecting previously unselected package r-cran-nlme. 539s Preparing to unpack .../302-r-cran-nlme_3.1.164-1_amd64.deb ... 539s Unpacking r-cran-nlme (3.1.164-1) ... 539s Selecting previously unselected package r-cran-mgcv. 539s Preparing to unpack .../303-r-cran-mgcv_1.9-1-1_amd64.deb ... 539s Unpacking r-cran-mgcv (1.9-1-1) ... 539s Selecting previously unselected package r-cran-farver. 539s Preparing to unpack .../304-r-cran-farver_2.1.1-1_amd64.deb ... 539s Unpacking r-cran-farver (2.1.1-1) ... 539s Selecting previously unselected package r-cran-labeling. 539s Preparing to unpack .../305-r-cran-labeling_0.4.3-1_all.deb ... 539s Unpacking r-cran-labeling (0.4.3-1) ... 539s Selecting previously unselected package r-cran-colorspace. 539s Preparing to unpack .../306-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 539s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 539s Selecting previously unselected package r-cran-munsell. 539s Preparing to unpack .../307-r-cran-munsell_0.5.0-2build1_all.deb ... 539s Unpacking r-cran-munsell (0.5.0-2build1) ... 540s Selecting previously unselected package r-cran-viridislite. 540s Preparing to unpack .../308-r-cran-viridislite_0.4.2-2_all.deb ... 540s Unpacking r-cran-viridislite (0.4.2-2) ... 540s Selecting previously unselected package r-cran-scales. 540s Preparing to unpack .../309-r-cran-scales_1.3.0-1_all.deb ... 540s Unpacking r-cran-scales (1.3.0-1) ... 540s Selecting previously unselected package r-cran-ggplot2. 540s Preparing to unpack .../310-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 540s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 540s Selecting previously unselected package r-cran-gridextra. 540s Preparing to unpack .../311-r-cran-gridextra_2.3-3build1_all.deb ... 540s Unpacking r-cran-gridextra (2.3-3build1) ... 540s Selecting previously unselected package r-cran-vgam. 540s Preparing to unpack .../312-r-cran-vgam_1.1-9-1_amd64.deb ... 540s Unpacking r-cran-vgam (1.1-9-1) ... 540s Selecting previously unselected package r-cran-mclust. 540s Preparing to unpack .../313-r-cran-mclust_6.0.1-1_amd64.deb ... 540s Unpacking r-cran-mclust (6.0.1-1) ... 540s Selecting previously unselected package r-bioc-rhdf5lib. 540s Preparing to unpack .../314-r-bioc-rhdf5lib_1.24.2+dfsg-1_amd64.deb ... 540s Unpacking r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 540s Selecting previously unselected package r-bioc-rhdf5filters. 540s Preparing to unpack .../315-r-bioc-rhdf5filters_1.14.1+dfsg-3_amd64.deb ... 540s Unpacking r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 540s Selecting previously unselected package r-bioc-rhdf5. 540s Preparing to unpack .../316-r-bioc-rhdf5_2.46.1+dfsg-1_amd64.deb ... 540s Unpacking r-bioc-rhdf5 (2.46.1+dfsg-1) ... 540s Selecting previously unselected package r-bioc-purecn. 540s Preparing to unpack .../317-r-bioc-purecn_2.8.1+dfsg-1_all.deb ... 540s Unpacking r-bioc-purecn (2.8.1+dfsg-1) ... 540s Selecting previously unselected package r-cran-brio. 540s Preparing to unpack .../318-r-cran-brio_1.1.4-1_amd64.deb ... 540s Unpacking r-cran-brio (1.1.4-1) ... 540s Selecting previously unselected package r-cran-ps. 540s Preparing to unpack .../319-r-cran-ps_1.7.6-1_amd64.deb ... 540s Unpacking r-cran-ps (1.7.6-1) ... 540s Selecting previously unselected package r-cran-processx. 540s Preparing to unpack .../320-r-cran-processx_3.8.3-1_amd64.deb ... 540s Unpacking r-cran-processx (3.8.3-1) ... 540s Selecting previously unselected package r-cran-callr. 540s Preparing to unpack .../321-r-cran-callr_3.7.3-2_all.deb ... 540s Unpacking r-cran-callr (3.7.3-2) ... 540s Selecting previously unselected package r-cran-lazyeval. 540s Preparing to unpack .../322-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 540s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 541s Selecting previously unselected package r-cran-rex. 541s Preparing to unpack .../323-r-cran-rex_1.2.1-1_all.deb ... 541s Unpacking r-cran-rex (1.2.1-1) ... 541s Selecting previously unselected package r-cran-covr. 541s Preparing to unpack .../324-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 541s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 541s Selecting previously unselected package r-cran-desc. 541s Preparing to unpack .../325-r-cran-desc_1.4.3-1_all.deb ... 541s Unpacking r-cran-desc (1.4.3-1) ... 541s Selecting previously unselected package r-cran-diffobj. 541s Preparing to unpack .../326-r-cran-diffobj_0.3.5-1_amd64.deb ... 541s Unpacking r-cran-diffobj (0.3.5-1) ... 541s Selecting previously unselected package r-cran-globals. 541s Preparing to unpack .../327-r-cran-globals_0.16.2-1_all.deb ... 541s Unpacking r-cran-globals (0.16.2-1) ... 541s Selecting previously unselected package r-cran-listenv. 541s Preparing to unpack .../328-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 541s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 541s Selecting previously unselected package r-cran-parallelly. 541s Preparing to unpack .../329-r-cran-parallelly_1.37.1-1_amd64.deb ... 541s Unpacking r-cran-parallelly (1.37.1-1) ... 541s Selecting previously unselected package r-cran-future. 541s Preparing to unpack .../330-r-cran-future_1.33.1+dfsg-1_all.deb ... 541s Unpacking r-cran-future (1.33.1+dfsg-1) ... 541s Selecting previously unselected package r-cran-getopt. 541s Preparing to unpack .../331-r-cran-getopt_1.20.4-1_all.deb ... 541s Unpacking r-cran-getopt (1.20.4-1) ... 541s Selecting previously unselected package r-cran-markdown. 541s Preparing to unpack .../332-r-cran-markdown_1.12+dfsg-1_all.deb ... 541s Unpacking r-cran-markdown (1.12+dfsg-1) ... 541s Selecting previously unselected package r-cran-optparse. 541s Preparing to unpack .../333-r-cran-optparse_1.7.4-1_all.deb ... 541s Unpacking r-cran-optparse (1.7.4-1) ... 541s Selecting previously unselected package r-cran-pkgbuild. 541s Preparing to unpack .../334-r-cran-pkgbuild_1.4.3-1_all.deb ... 541s Unpacking r-cran-pkgbuild (1.4.3-1) ... 541s Selecting previously unselected package r-cran-rprojroot. 541s Preparing to unpack .../335-r-cran-rprojroot_2.0.4-1_all.deb ... 541s Unpacking r-cran-rprojroot (2.0.4-1) ... 541s Selecting previously unselected package r-cran-pkgload. 541s Preparing to unpack .../336-r-cran-pkgload_1.3.4-1_all.deb ... 541s Unpacking r-cran-pkgload (1.3.4-1) ... 541s Selecting previously unselected package r-cran-praise. 541s Preparing to unpack .../337-r-cran-praise_1.0.0-4build1_all.deb ... 541s Unpacking r-cran-praise (1.0.0-4build1) ... 541s Selecting previously unselected package r-cran-r.cache. 541s Preparing to unpack .../338-r-cran-r.cache_0.16.0-1_all.deb ... 541s Unpacking r-cran-r.cache (0.16.0-1) ... 541s Selecting previously unselected package r-cran-pscbs. 541s Preparing to unpack .../339-r-cran-pscbs_0.66.0-2_all.deb ... 541s Unpacking r-cran-pscbs (0.66.0-2) ... 542s Selecting previously unselected package r-cran-rematch2. 542s Preparing to unpack .../340-r-cran-rematch2_2.1.2-2build1_all.deb ... 542s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 542s Selecting previously unselected package r-cran-waldo. 542s Preparing to unpack .../341-r-cran-waldo_0.5.2-1build1_all.deb ... 542s Unpacking r-cran-waldo (0.5.2-1build1) ... 542s Selecting previously unselected package r-cran-testthat. 542s Preparing to unpack .../342-r-cran-testthat_3.2.1-1_amd64.deb ... 542s Unpacking r-cran-testthat (3.2.1-1) ... 542s Setting up libjs-json (0~20221030+~1.0.8-1) ... 542s Setting up javascript-common (11+nmu1) ... 542s Setting up libgraphite2-3:amd64 (1.3.14-2) ... 542s Setting up libpixman-1-0:amd64 (0.42.2-1) ... 542s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ... 542s Setting up libpaper1:amd64 (1.1.29) ... 542s 542s Creating config file /etc/papersize with new version 542s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 542s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 542s Setting up libxpm4:amd64 (1:3.5.17-1) ... 542s Setting up hdf5-helpers (1.10.10+repack-3ubuntu1) ... 542s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 542s Setting up libxi6:amd64 (2:1.8.1-1) ... 542s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 542s Setting up libdatrie1:amd64 (0.2.13-3) ... 542s Setting up libjs-popper.js (1.16.1+ds-6) ... 542s Setting up libxcb-render0:amd64 (1.15-1) ... 542s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 542s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 542s Setting up libjs-lunr (2.3.9~dfsg-2) ... 542s Setting up unzip (6.0-28ubuntu3) ... 542s Setting up liblatex-tounicode-perl (0.54-2) ... 542s Setting up x11-common (1:7.7+23ubuntu2) ... 542s Setting up node-html5shiv (3.7.3+dfsg-5) ... 542s Setting up libdeflate0:amd64 (1.19-1) ... 542s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 542s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 542s Setting up libxcb-shm0:amd64 (1.15-1) ... 542s Setting up libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 542s Setting up libpaper-utils (1.1.29) ... 542s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ... 542s Setting up libjs-modernizr (2.6.2+ds1-5) ... 542s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ... 542s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 542s Setting up libaec0:amd64 (1.1.2-1) ... 542s Setting up libsnappy1v5:amd64 (1.1.10-1) ... 542s Setting up libjs-es5-shim (4.6.7-2) ... 542s Setting up tex-common (6.18) ... 543s update-language: texlive-base not installed and configured, doing nothing! 543s Setting up libio-string-perl (1.08-4) ... 543s Setting up zip (3.0-13) ... 543s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 543s Setting up libblas3:amd64 (3.12.0-3) ... 543s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 543s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 543s Setting up libpkgconf3:amd64 (1.8.1-2) ... 543s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 543s Setting up libcurl4-openssl-dev:amd64 (8.5.0-2ubuntu2) ... 543s Setting up libteckit0:amd64 (2.5.12+ds1-1) ... 543s Setting up t1utils (1.41-4build2) ... 543s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ... 543s Setting up libtexlua53-5:amd64 (2023.20230311.66589-9) ... 543s Setting up libjs-d3 (3.5.17-4) ... 543s Setting up fonts-dejavu-mono (2.37-8) ... 543s Setting up libssl-dev:amd64 (3.0.10-1ubuntu4) ... 543s Setting up libmpc3:amd64 (1.3.1-1) ... 543s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ... 543s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... 543s Setting up icu-devtools (74.2-1ubuntu1) ... 543s Setting up fonts-dejavu-core (2.37-8) ... 543s Setting up pkgconf-bin (1.8.1-2) ... 543s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 543s Setting up libkpathsea6:amd64 (2023.20230311.66589-9) ... 543s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 543s Setting up libwebp7:amd64 (1.3.2-0.4) ... 543s Setting up liblzma-dev:amd64 (5.4.5-0.3) ... 543s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ... 543s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 543s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 543s Setting up libnsl-dev:amd64 (1.3.0-3) ... 543s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 543s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 543s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 543s Setting up libblosc1:amd64 (1.21.5+ds-1) ... 543s Setting up fonts-lmodern (2.005-1) ... 543s Setting up liblua5.4-0:amd64 (5.4.6-3) ... 543s Setting up libharfbuzz0b:amd64 (8.3.0-2) ... 543s Setting up libthai-data (0.1.29-2) ... 543s Setting up node-bootstrap-sass (3.4.3-2) ... 543s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 543s Setting up libxss1:amd64 (1:1.2.3-1build2) ... 543s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 543s Setting up pandoc-data (3.1.3-1) ... 543s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ... 543s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 543s Setting up libisl23:amd64 (0.26-3) ... 543s Setting up libc-dev-bin (2.39-0ubuntu2) ... 543s Setting up node-normalize.css (8.0.1-5) ... 543s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 543s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 543s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 543s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 543s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 543s Setting up libblas-dev:amd64 (3.12.0-3) ... 543s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 543s Setting up libsz2:amd64 (1.1.2-1) ... 543s Setting up dctrl-tools (2.24-3build2) ... 543s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 543s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 543s Setting up libsynctex2:amd64 (2023.20230311.66589-9) ... 543s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 543s Setting up libpotrace0:amd64 (1.16-2) ... 543s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 543s Setting up libice6:amd64 (2:1.0.10-1build2) ... 543s Setting up liblapack3:amd64 (3.12.0-3) ... 543s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 543s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 543s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 543s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 543s Setting up libaec-dev:amd64 (1.1.2-1) ... 543s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 543s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 543s Setting up pkgconf:amd64 (1.8.1-2) ... 543s Setting up libthai0:amd64 (0.1.29-2) ... 543s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 543s Setting up libptexenc1:amd64 (2023.20230311.66589-9) ... 543s Setting up pandoc (3.1.3+ds-2) ... 543s Setting up liblapack-dev:amd64 (3.12.0-3) ... 543s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 543s Setting up pkg-config:amd64 (1.8.1-2) ... 543s Setting up libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 543s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 543s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 543s Setting up libhdf5-cpp-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 543s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ... 543s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 543s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 543s Setting up libsm6:amd64 (2:1.2.3-1build2) ... 543s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ... 543s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 543s Setting up libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 543s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 543s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 543s Setting up fontconfig (2.15.0-1ubuntu1) ... 545s Regenerating fonts cache... done. 545s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 545s Setting up libxft2:amd64 (2.3.6-1) ... 545s Setting up libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 545s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 545s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ... 545s Setting up cpp-13 (13.2.0-17ubuntu2) ... 545s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 545s Setting up libtk8.6:amd64 (8.6.13-2) ... 545s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... 545s Setting up libreadline-dev:amd64 (8.2-3) ... 545s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 545s Setting up libcairo2:amd64 (1.18.0-1) ... 545s Setting up libhdf5-hl-cpp-100:amd64 (1.10.10+repack-3ubuntu1) ... 545s Setting up gcc-13 (13.2.0-17ubuntu2) ... 545s Setting up libhdf5-fortran-102:amd64 (1.10.10+repack-3ubuntu1) ... 545s Setting up libxt6:amd64 (1:1.2.1-1.1) ... 545s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 545s Setting up cpp (4:13.2.0-7ubuntu1) ... 545s Setting up libhdf5-hl-fortran-100:amd64 (1.10.10+repack-3ubuntu1) ... 545s Setting up libboost-dev:amd64 (1.83.0.1ubuntu2) ... 545s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 545s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 545s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 545s Setting up libxmu6:amd64 (2:1.1.3-3) ... 545s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 545s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 545s Setting up libpng-dev:amd64 (1.6.43-1) ... 545s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 545s Setting up libxaw7:amd64 (2:1.0.14-1) ... 545s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 545s Setting up gcc (4:13.2.0-7ubuntu1) ... 545s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 545s Setting up r-base-core (4.3.2-1build1) ... 545s 545s Creating config file /etc/R/Renviron with new version 545s Setting up r-cran-crayon (1.5.2-1) ... 545s Setting up libhdf5-dev (1.10.10+repack-3ubuntu1) ... 545s update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 545s Setting up r-cran-labeling (0.4.3-1) ... 545s Setting up r-cran-sourcetools (0.1.7-1-1) ... 545s Setting up r-cran-futile.options (1.0.1-3build1) ... 545s Setting up r-cran-lattice (0.22-5-1) ... 545s Setting up r-cran-ps (1.7.6-1) ... 545s Setting up r-cran-nlme (3.1.164-1) ... 545s Setting up r-cran-farver (2.1.1-1) ... 545s Setting up r-cran-formatr (1.14-1) ... 545s Setting up r-cran-xml (3.99-0.16.1-1) ... 545s Setting up r-cran-viridislite (0.4.2-2) ... 545s Setting up texlive-binaries (2023.20230311.66589-9) ... 545s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 545s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 545s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 545s Setting up r-cran-lazyeval (0.2.2-1build1) ... 545s Setting up r-cran-commonmark (1.9.1-1) ... 545s Setting up r-cran-r6 (2.5.1-1) ... 545s Setting up r-cran-pkgkitten (0.2.3-1) ... 545s Setting up texlive-base (2023.20240207-1) ... 546s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 546s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 547s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 547s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 547s Setting up r-cran-magrittr (2.0.3-1) ... 547s Setting up r-cran-rappdirs (0.3.3-1) ... 547s Setting up r-cran-filelock (1.0.3-1) ... 547s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 547s Setting up r-cran-littler (0.3.19-1) ... 547s Setting up r-cran-bh (1.84.0-1) ... 547s Setting up r-cran-fs (1.6.3+dfsg-1) ... 547s Setting up r-cran-rcpp (1.0.12-1) ... 547s Setting up r-cran-curl (5.2.0+dfsg-1) ... 547s Setting up r-cran-codetools (0.2-19-1) ... 547s Setting up g++-13 (13.2.0-17ubuntu2) ... 547s Setting up r-cran-brio (1.1.4-1) ... 547s Setting up r-cran-diffobj (0.3.5-1) ... 547s Setting up r-bioc-biocgenerics (0.48.1-2) ... 547s Setting up r-cran-rlang (1.1.3-1) ... 547s Setting up r-cran-matrixstats (1.2.0-1) ... 547s Setting up r-cran-listenv (0.9.1+dfsg-1) ... 547s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 547s Setting up r-cran-xfun (0.41+dfsg-1) ... 547s Setting up r-cran-vgam (1.1-9-1) ... 547s Setting up r-cran-sys (3.4.2-1) ... 547s Setting up r-cran-plogr (0.2.0-3build1) ... 547s Setting up r-cran-withr (2.5.0-1) ... 547s Setting up r-cran-processx (3.8.3-1) ... 547s Setting up r-cran-mime (0.12-1) ... 547s Setting up r-cran-praise (1.0.0-4build1) ... 547s Setting up r-cran-generics (0.1.3-1) ... 547s Setting up r-cran-base64enc (0.1-3-3) ... 547s Setting up r-cran-abind (1.4-5-2) ... 547s Setting up r-cran-digest (0.6.34-1) ... 547s Setting up r-cran-yaml (2.3.8-1) ... 547s Setting up r-cran-lambda.r (1.2.4-2build1) ... 547s Setting up r-cran-evaluate (0.23-1) ... 547s Setting up r-cran-dbi (1.2.2-1) ... 547s Setting up r-cran-highr (0.10+dfsg-1) ... 547s Setting up r-cran-prettyunits (1.2.0-1) ... 547s Setting up r-cran-fansi (1.0.5-1) ... 547s Setting up r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 547s Setting up r-cran-mass (7.3-60.0.1-1) ... 547s Setting up r-cran-mclust (6.0.1-1) ... 547s Setting up r-cran-snow (1:0.4.4-2) ... 547s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 547s Setting up r-cran-glue (1.7.0-1) ... 547s Setting up r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 547s Setting up r-cran-bit (4.0.5-1) ... 547s Setting up r-cran-xtable (1:1.8-4-2) ... 547s Setting up r-cran-cli (3.6.2-1) ... 547s Setting up gfortran (4:13.2.0-7ubuntu1) ... 547s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 547s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 547s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 547s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 547s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 547s Setting up r-cran-bitops (1.0-7-1) ... 547s Setting up r-cran-rprojroot (2.0.4-1) ... 547s Setting up r-cran-bit64 (4.0.5-1) ... 547s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 547s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 547s Setting up r-cran-askpass (1.2.0-1) ... 547s Setting up r-cran-fastmap (1.1.1-1) ... 547s Setting up r-cran-png (0.1-8-1) ... 547s Setting up r-cran-r.methodss3 (1.8.2-1) ... 547s Setting up r-bioc-biobase (2.62.0-1) ... 547s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 547s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 547s Setting up r-cran-getopt (1.20.4-1) ... 547s Setting up r-cran-utf8 (1.2.4-1) ... 547s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 547s Setting up r-cran-parallelly (1.37.1-1) ... 547s Setting up r-cran-stringi (1.8.3-1) ... 547s Setting up texlive-latex-base (2023.20240207-1) ... 547s Setting up r-cran-rex (1.2.1-1) ... 547s Setting up r-cran-markdown (1.12+dfsg-1) ... 547s Setting up r-cran-cpp11 (0.4.7-1) ... 547s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 547s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 547s Setting up r-cran-isoband (0.2.7-1) ... 547s Setting up r-cran-futile.logger (1.4.3-4build1) ... 547s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 547s Setting up r-cran-later (1.3.2+dfsg-1) ... 547s Setting up r-cran-matrix (1.6-5-1) ... 547s Setting up r-cran-tinytex (0.49-1) ... 547s Setting up r-cran-knitr (1.45+dfsg-1) ... 547s Setting up r-cran-mgcv (1.9-1-1) ... 547s Setting up g++ (4:13.2.0-7ubuntu1) ... 547s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 547s Setting up r-bioc-dnacopy (1.76.0-1) ... 547s Setting up r-cran-cachem (1.0.8-1) ... 547s Setting up build-essential (12.10ubuntu1) ... 547s Setting up r-bioc-iranges (2.36.0-1) ... 547s Setting up r-cran-rjson (0.2.21-1) ... 547s Setting up r-cran-globals (0.16.2-1) ... 547s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 547s Setting up r-cran-restfulr (0.0.15-1) ... 547s Setting up r-cran-optparse (1.7.4-1) ... 547s Setting up r-cran-vctrs (0.6.5-1) ... 547s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 547s Setting up r-cran-ellipsis (0.3.2-2) ... 547s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 547s Setting up r-base-dev (4.3.2-1build1) ... 547s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 547s Setting up r-cran-stringr (1.5.1-1) ... 547s Setting up r-bioc-biocparallel (1.36.0-1) ... 547s Setting up r-cran-callr (3.7.3-2) ... 547s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 547s Setting up r-cran-desc (1.4.3-1) ... 547s Setting up r-cran-xml2 (1.3.6-1) ... 547s Setting up r-bioc-rhdf5 (2.46.1+dfsg-1) ... 547s Setting up r-cran-munsell (0.5.0-2build1) ... 547s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 547s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 547s Setting up r-cran-r.oo (1.26.0-1) ... 547s Setting up r-cran-future (1.33.1+dfsg-1) ... 547s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 547s Setting up texlive-bibtex-extra (2023.20240207-1) ... 547s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 547s Setting up r-cran-httr (1.4.7+dfsg-1) ... 547s Setting up r-cran-gridextra (2.3-3build1) ... 547s Setting up r-cran-hms (1.1.3-1) ... 547s Setting up r-cran-scales (1.3.0-1) ... 547s Setting up r-cran-memoise (2.0.1-1) ... 547s Setting up r-cran-covr (3.6.4+dfsg-1) ... 547s Setting up r-cran-promises (1.2.1+dfsg-1) ... 547s Setting up r-cran-purrr (1.0.2-1) ... 547s Setting up r-cran-blob (1.2.4-1) ... 547s Setting up r-cran-htmltools (0.5.7-1) ... 547s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 547s Setting up r-bioc-xvector (0.42.0-1) ... 547s Setting up r-cran-pkgbuild (1.4.3-1) ... 547s Setting up r-cran-sass (0.4.8+dfsg-1) ... 547s Setting up r-cran-dplyr (1.1.4-1) ... 547s Setting up r-cran-rsqlite (2.3.4-1) ... 547s Setting up r-cran-progress (1.2.3-1) ... 547s Setting up r-cran-pkgload (1.3.4-1) ... 547s Setting up r-cran-r.utils (2.12.3-1) ... 547s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 547s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 547s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 547s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 547s Setting up r-cran-rematch2 (2.1.2-2build1) ... 547s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 547s Setting up r-cran-fontawesome (0.5.2-1) ... 547s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 547s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 547s Setting up r-cran-waldo (0.5.2-1build1) ... 547s Setting up r-cran-tidyr (1.3.1-1) ... 547s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 547s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 547s Setting up r-bioc-aroma.light (3.32.0-1) ... 547s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 547s Setting up r-cran-r.cache (0.16.0-1) ... 547s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 547s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 547s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 547s Setting up r-bioc-annotationdbi (1.64.1-1) ... 547s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 547s Setting up r-cran-testthat (3.2.1-1) ... 547s Setting up r-cran-pscbs (0.66.0-2) ... 547s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 547s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 547s Setting up r-bioc-genomicalignments (1.38.2-1) ... 547s Setting up r-cran-bookdown (0.37+dfsg-1) ... 547s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ... 547s Setting up r-bioc-rtracklayer (1.62.0-1) ... 547s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 547s Setting up r-bioc-bsgenome (1.70.2-1) ... 547s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 547s Setting up r-bioc-variantannotation (1.48.1-1) ... 547s Setting up r-bioc-purecn (2.8.1+dfsg-1) ... 547s Processing triggers for libc-bin (2.39-0ubuntu2) ... 547s Processing triggers for man-db (2.12.0-3) ... 549s Processing triggers for install-info (7.1-3) ... 549s Processing triggers for tex-common (6.18) ... 550s Running updmap-sys. This may take some time... done. 550s Running mktexlsr /var/lib/texmf ... done. 550s Building format(s) --all. 579s This may take some time... done. 590s Reading package lists... 590s Building dependency tree... 590s Reading state information... 590s Starting pkgProblemResolver with broken count: 0 590s Starting 2 pkgProblemResolver with broken count: 0 590s Done 591s The following NEW packages will be installed: 591s autopkgtest-satdep 591s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 591s Need to get 0 B/700 B of archives. 591s After this operation, 0 B of additional disk space will be used. 591s Get:1 /tmp/autopkgtest.wUkdmD/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 591s Selecting previously unselected package autopkgtest-satdep. 591s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 126156 files and directories currently installed.) 591s Preparing to unpack .../2-autopkgtest-satdep.deb ... 591s Unpacking autopkgtest-satdep (0) ... 591s Setting up autopkgtest-satdep (0) ... 593s (Reading database ... 126156 files and directories currently installed.) 593s Removing autopkgtest-satdep (0) ... 593s autopkgtest [13:17:51]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 593s autopkgtest [13:17:51]: test pkg-r-autopkgtest: [----------------------- 593s Test: Try to load the R library PureCN 593s 593s R version 4.3.2 (2023-10-31) -- "Eye Holes" 593s Copyright (C) 2023 The R Foundation for Statistical Computing 593s Platform: x86_64-pc-linux-gnu (64-bit) 593s 593s R is free software and comes with ABSOLUTELY NO WARRANTY. 593s You are welcome to redistribute it under certain conditions. 593s Type 'license()' or 'licence()' for distribution details. 593s 593s R is a collaborative project with many contributors. 593s Type 'contributors()' for more information and 593s 'citation()' on how to cite R or R packages in publications. 593s 593s Type 'demo()' for some demos, 'help()' for on-line help, or 593s 'help.start()' for an HTML browser interface to help. 593s Type 'q()' to quit R. 593s 593s > library('PureCN') 593s Loading required package: DNAcopy 593s Loading required package: VariantAnnotation 593s Loading required package: BiocGenerics 593s 593s Attaching package: ‘BiocGenerics’ 593s 593s The following objects are masked from ‘package:stats’: 593s 593s IQR, mad, sd, var, xtabs 593s 593s The following objects are masked from ‘package:base’: 593s 593s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 593s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 593s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 593s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 593s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 593s table, tapply, union, unique, unsplit, which.max, which.min 593s 593s Loading required package: MatrixGenerics 593s Loading required package: matrixStats 593s 593s Attaching package: ‘MatrixGenerics’ 593s 593s The following objects are masked from ‘package:matrixStats’: 593s 593s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 593s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 593s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 593s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 593s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 593s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 593s colWeightedMeans, colWeightedMedians, colWeightedSds, 593s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 593s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 593s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 593s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 593s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 593s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 593s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 593s rowWeightedSds, rowWeightedVars 593s 593s Loading required package: GenomeInfoDb 593s Loading required package: S4Vectors 593s Loading required package: stats4 594s 594s Attaching package: ‘S4Vectors’ 594s 594s The following object is masked from ‘package:utils’: 594s 594s findMatches 594s 594s The following objects are masked from ‘package:base’: 594s 594s expand.grid, I, unname 594s 594s Loading required package: IRanges 595s Loading required package: GenomicRanges 595s Loading required package: SummarizedExperiment 595s Loading required package: Biobase 596s Welcome to Bioconductor 596s 596s Vignettes contain introductory material; view with 596s 'browseVignettes()'. To cite Bioconductor, see 596s 'citation("Biobase")', and for packages 'citation("pkgname")'. 596s 596s 596s Attaching package: ‘Biobase’ 596s 596s The following object is masked from ‘package:MatrixGenerics’: 596s 596s rowMedians 596s 596s The following objects are masked from ‘package:matrixStats’: 596s 596s anyMissing, rowMedians 596s 598s Loading required package: Rsamtools 598s Loading required package: Biostrings 598s Loading required package: XVector 601s 601s Attaching package: ‘Biostrings’ 601s 601s The following object is masked from ‘package:base’: 601s 601s strsplit 601s 604s 604s Attaching package: ‘VariantAnnotation’ 604s 604s The following object is masked from ‘package:base’: 604s 604s tabulate 604s 604s > 604s > 605s Other tests are currently unsupported! 605s They will be progressively added. 605s autopkgtest [13:18:03]: test pkg-r-autopkgtest: -----------------------] 605s autopkgtest [13:18:03]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 605s pkg-r-autopkgtest PASS 605s autopkgtest [13:18:03]: @@@@@@@@@@@@@@@@@@@@ summary 605s pkg-r-autopkgtest PASS 623s Creating nova instance adt-noble-i386-r-bioc-purecn-20240321-130758-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240320.img (UUID 3219a3f4-90ea-47d9-8dfb-3912f2ae9f95)...