0s autopkgtest [13:05:36]: starting date and time: 2024-03-21 13:05:36+0000 0s autopkgtest [13:05:36]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [13:05:36]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0wq2bcj7/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-bioc-rsamtools --apt-upgrade r-bioc-purecn --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-67.secgroup --name adt-noble-i386-r-bioc-purecn-20240321-130535-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 276s autopkgtest [13:10:12]: testbed dpkg architecture: amd64 276s autopkgtest [13:10:12]: testbed apt version: 2.7.12 276s autopkgtest [13:10:12]: test architecture: i386 276s autopkgtest [13:10:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 277s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 277s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 277s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3818 kB] 277s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 277s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 277s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [697 kB] 277s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [460 kB] 277s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 277s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 277s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 277s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 277s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4242 kB] 277s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1281 kB] 277s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 277s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 277s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 277s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 280s Fetched 11.3 MB in 2s (7217 kB/s) 281s Reading package lists... 282s Reading package lists... 282s Building dependency tree... 282s Reading state information... 283s Calculating upgrade... 283s The following packages will be upgraded: 283s debianutils linux-firmware 283s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 283s Need to get 476 MB of archives. 283s After this operation, 5724 kB of additional disk space will be used. 283s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.17 [89.8 kB] 283s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-firmware amd64 20240318.git3b128b60-0ubuntu1 [475 MB] 287s Fetched 476 MB in 3s (140 MB/s) 287s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 287s Preparing to unpack .../debianutils_5.17_amd64.deb ... 287s Unpacking debianutils (5.17) over (5.16) ... 287s Setting up debianutils (5.17) ... 287s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 287s Preparing to unpack .../linux-firmware_20240318.git3b128b60-0ubuntu1_amd64.deb ... 287s Unpacking linux-firmware (20240318.git3b128b60-0ubuntu1) over (20240202.git36777504-0ubuntu1) ... 290s Setting up linux-firmware (20240318.git3b128b60-0ubuntu1) ... 290s Processing triggers for man-db (2.12.0-3) ... 291s Processing triggers for initramfs-tools (0.142ubuntu20) ... 291s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 291s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 299s Reading package lists... 299s Building dependency tree... 299s Reading state information... 299s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 300s sh: Attempting to set up Debian/Ubuntu apt sources automatically 300s sh: Distribution appears to be Ubuntu 301s Reading package lists... 301s Building dependency tree... 301s Reading state information... 301s eatmydata is already the newest version (131-1). 301s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 301s Reading package lists... 301s Building dependency tree... 301s Reading state information... 302s dbus is already the newest version (1.14.10-4ubuntu1). 302s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 302s Reading package lists... 302s Building dependency tree... 302s Reading state information... 302s rng-tools-debian is already the newest version (2.4). 302s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 302s Reading package lists... 302s Building dependency tree... 302s Reading state information... 303s The following packages will be REMOVED: 303s cloud-init* python3-configobj* python3-debconf* 303s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 303s After this operation, 3252 kB disk space will be freed. 303s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 303s Removing cloud-init (24.1.1-0ubuntu1) ... 304s Removing python3-configobj (5.0.8-3) ... 304s Removing python3-debconf (1.5.86) ... 304s Processing triggers for man-db (2.12.0-3) ... 304s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71476 files and directories currently installed.) 304s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 305s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 305s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 305s invoke-rc.d: policy-rc.d denied execution of try-restart. 305s Reading package lists... 305s Building dependency tree... 305s Reading state information... 305s linux-generic is already the newest version (6.8.0-11.11+1). 305s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 306s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 306s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 306s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 308s Reading package lists... 308s Reading package lists... 308s Building dependency tree... 308s Reading state information... 308s Calculating upgrade... 308s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 308s Reading package lists... 309s Building dependency tree... 309s Reading state information... 309s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 309s autopkgtest [13:10:45]: rebooting testbed after setup commands that affected boot 330s autopkgtest [13:11:06]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 331s autopkgtest [13:11:07]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-purecn 332s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (dsc) [2494 B] 332s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (tar) [5486 kB] 332s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (diff) [6412 B] 332s gpgv: Signature made Fri Dec 1 10:51:26 2023 UTC 332s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 332s gpgv: issuer "tillea@rki.de" 332s gpgv: Can't check signature: No public key 332s dpkg-source: warning: cannot verify inline signature for ./r-bioc-purecn_2.8.1+dfsg-1.dsc: no acceptable signature found 333s autopkgtest [13:11:09]: testing package r-bioc-purecn version 2.8.1+dfsg-1 334s autopkgtest [13:11:10]: build not needed 340s autopkgtest [13:11:16]: test pkg-r-autopkgtest: preparing testbed 346s Note, using file '/tmp/autopkgtest.P1WAyZ/1-autopkgtest-satdep.dsc' to get the build dependencies 346s Reading package lists... 346s Building dependency tree... 346s Reading state information... 347s Starting pkgProblemResolver with broken count: 0 347s Starting 2 pkgProblemResolver with broken count: 0 347s Done 347s The following NEW packages will be installed: 347s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 347s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 347s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 347s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 347s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 347s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu hdf5-helpers 347s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 347s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 347s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 347s libcrypt-dev libcurl4-openssl-dev libdatrie1 libdeflate0 libfontconfig1 347s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 347s libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev 347s libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 347s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 347s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 347s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 347s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 347s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 347s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 347s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 347s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 347s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 347s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 347s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 347s libpotrace0 libptexenc1 libquadmath0 libreadline-dev libsharpyuv0 libsm6 347s libsnappy1v5 libssl-dev libstdc++-13-dev libsynctex2 libsz2 libtcl8.6 347s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 347s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 347s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 347s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 347s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 347s r-base-dev r-bioc-annotationdbi r-bioc-aroma.light r-bioc-biobase 347s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 347s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 347s r-bioc-delayedarray r-bioc-dnacopy r-bioc-genomeinfodb 347s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 347s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 347s r-bioc-org.hs.eg.db r-bioc-purecn r-bioc-rhdf5 r-bioc-rhdf5filters 347s r-bioc-rhdf5lib r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 347s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 347s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 347s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 347s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 347s r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 347s r-cran-cli r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-covr 347s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi 347s r-cran-dbplyr r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr 347s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap 347s r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 347s r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-generics 347s r-cran-getopt r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gridextra 347s r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv 347s r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr 347s r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval 347s r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-magrittr 347s r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mclust 347s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 347s r-cran-openssl r-cran-optparse r-cran-parallelly r-cran-pillar 347s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 347s r-cran-plogr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx 347s r-cran-progress r-cran-promises r-cran-ps r-cran-pscbs r-cran-purrr 347s r-cran-r.cache r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 347s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rematch2 347s r-cran-restfulr r-cran-rex r-cran-rjson r-cran-rlang r-cran-rmarkdown 347s r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-scales r-cran-shiny 347s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys 347s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 347s r-cran-utf8 r-cran-vctrs r-cran-vgam r-cran-viridislite r-cran-waldo 347s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 347s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 347s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 347s zlib1g-dev 347s 0 upgraded, 343 newly installed, 0 to remove and 0 not upgraded. 347s Need to get 557 MB of archives. 347s After this operation, 1850 MB of additional disk space will be used. 347s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 347s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 347s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 347s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 347s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 347s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 347s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 347s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 347s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 347s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 347s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 347s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 347s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 347s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 347s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 347s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 347s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 347s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 348s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 348s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 348s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 348s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 348s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 348s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 348s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 348s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 348s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 348s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 348s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 348s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 348s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 348s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 348s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 348s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 348s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 348s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 348s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 348s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 348s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 348s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 348s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 348s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 348s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 348s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 348s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 348s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 348s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 348s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 348s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 348s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 348s Get:51 http://ftpmaster.internal/ubuntu noble/universe amd64 hdf5-helpers amd64 1.10.10+repack-3ubuntu1 [15.5 kB] 348s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 348s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 348s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 348s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 348s Get:56 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 348s Get:57 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 348s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 348s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 348s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libsnappy1v5 amd64 1.1.10-1 [28.4 kB] 348s Get:61 http://ftpmaster.internal/ubuntu noble/universe amd64 libblosc1 amd64 1.21.5+ds-1 [36.5 kB] 348s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 348s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 348s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 348s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 348s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 348s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 348s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 348s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 348s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libcurl4-openssl-dev amd64 8.5.0-2ubuntu2 [446 kB] 348s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 348s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 348s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 348s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 348s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 348s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 348s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-cpp-103-1 amd64 1.10.10+repack-3ubuntu1 [128 kB] 348s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-fortran-102 amd64 1.10.10+repack-3ubuntu1 [86.4 kB] 348s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB] 348s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-fortran-100 amd64 1.10.10+repack-3ubuntu1 [32.5 kB] 348s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-cpp-100 amd64 1.10.10+repack-3ubuntu1 [11.0 kB] 348s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 348s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 348s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 348s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 348s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 348s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 348s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec-dev amd64 1.1.2-1 [19.5 kB] 348s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libssl-dev amd64 3.0.10-1ubuntu4 [2400 kB] 348s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-dev amd64 1.10.10+repack-3ubuntu1 [2826 kB] 348s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 348s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 348s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 349s Get:94 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 349s Get:95 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 349s Get:96 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 349s Get:97 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 349s Get:98 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 349s Get:99 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 349s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 349s Get:101 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 349s Get:102 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 349s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 349s Get:104 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 349s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 349s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 349s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 349s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 349s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 349s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 349s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 349s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 349s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 349s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 349s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 349s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 349s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 349s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 349s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 349s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 349s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 349s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 349s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 349s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 349s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 349s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 349s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 349s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 349s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 349s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 349s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 349s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 349s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 349s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 349s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 349s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 349s Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 349s Get:138 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 349s Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 349s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 349s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 349s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 349s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 349s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 349s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 349s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 349s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 349s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 349s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 349s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 349s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 349s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 349s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 349s Get:154 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 349s Get:155 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 349s Get:156 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 349s Get:157 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 349s Get:158 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 349s Get:159 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 349s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 350s Get:161 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 350s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 350s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 350s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 350s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 350s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 350s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 350s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 350s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 350s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 350s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 350s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 350s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 350s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 350s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 350s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 350s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 350s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 350s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 350s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 350s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 350s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 350s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 350s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 350s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 350s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 350s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 350s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 350s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 350s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 350s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 350s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 350s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 350s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 350s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 350s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 350s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 350s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 350s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 350s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 350s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 350s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 350s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 350s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.oo all 1.26.0-1 [955 kB] 350s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.utils all 2.12.3-1 [1386 kB] 350s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 350s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-aroma.light all 3.32.0-1 [576 kB] 350s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 350s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 350s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 350s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 350s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 350s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 350s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 350s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 350s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 350s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 350s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 350s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 350s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 350s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 350s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 350s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 350s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 350s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 350s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 350s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 350s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 350s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 350s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 350s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 350s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 350s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 350s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 350s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 350s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 350s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 350s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 350s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 350s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 350s Get:241 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 351s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 351s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 351s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 351s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 351s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 351s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 351s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 351s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 351s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 351s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 351s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 351s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 351s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 351s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 351s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 351s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 351s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 351s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 351s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 351s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 351s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 351s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 351s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 351s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 351s Get:266 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 351s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 351s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 351s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 351s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 352s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 352s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 352s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 352s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 352s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 352s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 352s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 352s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 352s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 352s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 352s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 352s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 352s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 352s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 352s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 352s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 352s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 352s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 352s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 352s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 352s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 352s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 352s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 352s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-dnacopy amd64 1.76.0-1 [380 kB] 352s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 352s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB] 352s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-variantannotation amd64 1.48.1-1 [3527 kB] 352s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 352s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-data.table amd64 1.14.10+dfsg-1 [1837 kB] 352s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 352s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 352s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 352s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 352s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 353s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 353s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 353s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 353s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 353s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 353s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 353s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 353s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 353s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vgam amd64 1.1-9-1 [7312 kB] 353s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mclust amd64 6.0.1-1 [3913 kB] 353s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5lib amd64 1.24.2+dfsg-1 [96.2 kB] 353s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5filters amd64 1.14.1+dfsg-3 [136 kB] 353s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5 amd64 2.46.1+dfsg-1 [808 kB] 353s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-purecn all 2.8.1+dfsg-1 [6042 kB] 353s Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 353s Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 353s Get:321 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 353s Get:322 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 353s Get:323 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 353s Get:324 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rex all 1.2.1-1 [129 kB] 353s Get:325 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 353s Get:326 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 353s Get:327 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 353s Get:328 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-globals all 0.16.2-1 [117 kB] 353s Get:329 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 353s Get:330 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-parallelly amd64 1.37.1-1 [365 kB] 353s Get:331 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 353s Get:332 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-getopt all 1.20.4-1 [38.4 kB] 353s Get:333 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-markdown all 1.12+dfsg-1 [179 kB] 353s Get:334 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-optparse all 1.7.4-1 [81.6 kB] 353s Get:335 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 353s Get:336 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 353s Get:337 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 353s Get:338 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 353s Get:339 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.cache all 0.16.0-1 [113 kB] 353s Get:340 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pscbs all 0.66.0-2 [4345 kB] 353s Get:341 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 353s Get:342 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 353s Get:343 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 354s Preconfiguring packages ... 354s Fetched 557 MB in 6s (96.6 MB/s) 354s Selecting previously unselected package libc-dev-bin. 354s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71421 files and directories currently installed.) 354s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 354s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 354s Selecting previously unselected package linux-libc-dev:amd64. 354s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 354s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 354s Selecting previously unselected package libcrypt-dev:amd64. 354s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 354s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 354s Selecting previously unselected package libtirpc-dev:amd64. 354s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 354s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 354s Selecting previously unselected package libnsl-dev:amd64. 354s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 354s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 354s Selecting previously unselected package rpcsvc-proto. 354s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 354s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 354s Selecting previously unselected package libc6-dev:amd64. 354s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 354s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 355s Selecting previously unselected package libisl23:amd64. 355s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 355s Unpacking libisl23:amd64 (0.26-3) ... 355s Selecting previously unselected package libmpc3:amd64. 355s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 355s Unpacking libmpc3:amd64 (1.3.1-1) ... 355s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 355s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 355s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 355s Selecting previously unselected package cpp-13. 355s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 355s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 355s Selecting previously unselected package cpp-x86-64-linux-gnu. 355s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 355s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 355s Selecting previously unselected package cpp. 355s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 355s Unpacking cpp (4:13.2.0-7ubuntu1) ... 355s Selecting previously unselected package libcc1-0:amd64. 355s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 355s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 355s Selecting previously unselected package libgomp1:amd64. 355s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 355s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 355s Selecting previously unselected package libitm1:amd64. 355s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 355s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 355s Selecting previously unselected package libatomic1:amd64. 355s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 355s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 355s Selecting previously unselected package libasan8:amd64. 355s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 355s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 355s Selecting previously unselected package liblsan0:amd64. 355s 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fonts-mathjax (2.7.9+dfsg-1) ... 357s Selecting previously unselected package libgfortran5:amd64. 357s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 357s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 357s Selecting previously unselected package libgfortran-13-dev:amd64. 357s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 357s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 357s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 357s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 357s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 357s Selecting previously unselected package gfortran-13. 357s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 357s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 357s Selecting previously unselected package gfortran-x86-64-linux-gnu. 357s Preparing to unpack .../048-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 357s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 357s Selecting previously unselected package gfortran. 357s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 357s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 357s Selecting previously unselected package hdf5-helpers. 357s Preparing to unpack .../050-hdf5-helpers_1.10.10+repack-3ubuntu1_amd64.deb ... 357s Unpacking hdf5-helpers (1.10.10+repack-3ubuntu1) ... 357s Selecting previously unselected package icu-devtools. 357s Preparing to unpack .../051-icu-devtools_74.2-1ubuntu1_amd64.deb ... 357s Unpacking icu-devtools (74.2-1ubuntu1) ... 358s Selecting previously unselected package javascript-common. 358s Preparing to unpack .../052-javascript-common_11+nmu1_all.deb ... 358s Unpacking javascript-common (11+nmu1) ... 358s Selecting previously unselected package libaec0:amd64. 358s Preparing to unpack .../053-libaec0_1.1.2-1_amd64.deb ... 358s Unpacking libaec0:amd64 (1.1.2-1) ... 358s Selecting previously unselected package libio-string-perl. 358s Preparing to unpack .../054-libio-string-perl_1.08-4_all.deb ... 358s Unpacking libio-string-perl (1.08-4) ... 358s Selecting previously unselected package liblatex-tounicode-perl. 358s Preparing to unpack .../055-liblatex-tounicode-perl_0.54-2_all.deb ... 358s Unpacking liblatex-tounicode-perl (0.54-2) ... 358s Selecting previously unselected package libbibtex-parser-perl. 358s Preparing to unpack .../056-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 358s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 358s Selecting previously unselected package libblas3:amd64. 358s Preparing to unpack .../057-libblas3_3.12.0-3_amd64.deb ... 358s Unpacking libblas3:amd64 (3.12.0-3) ... 358s Selecting previously unselected package libblas-dev:amd64. 358s Preparing to unpack .../058-libblas-dev_3.12.0-3_amd64.deb ... 358s Unpacking libblas-dev:amd64 (3.12.0-3) ... 358s Selecting previously unselected package libsnappy1v5:amd64. 358s Preparing to unpack .../059-libsnappy1v5_1.1.10-1_amd64.deb ... 358s Unpacking libsnappy1v5:amd64 (1.1.10-1) ... 358s Selecting previously unselected package libblosc1:amd64. 358s Preparing to unpack .../060-libblosc1_1.21.5+ds-1_amd64.deb ... 358s Unpacking libblosc1:amd64 (1.21.5+ds-1) ... 358s Selecting previously unselected package libboost1.83-dev:amd64. 358s Preparing to unpack .../061-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 358s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 360s Selecting previously unselected package libboost-dev:amd64. 360s Preparing to unpack .../062-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 360s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ... 360s Selecting previously unselected package libbz2-dev:amd64. 360s Preparing to unpack .../063-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 360s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 360s Selecting previously unselected package libpixman-1-0:amd64. 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360s Unpacking libcurl4-openssl-dev:amd64 (8.5.0-2ubuntu2) ... 360s Selecting previously unselected package libdatrie1:amd64. 360s Preparing to unpack .../070-libdatrie1_0.2.13-3_amd64.deb ... 360s Unpacking libdatrie1:amd64 (0.2.13-3) ... 360s Selecting previously unselected package libdeflate0:amd64. 360s Preparing to unpack .../071-libdeflate0_1.19-1_amd64.deb ... 360s Unpacking libdeflate0:amd64 (1.19-1) ... 360s Selecting previously unselected package libgraphite2-3:amd64. 360s Preparing to unpack .../072-libgraphite2-3_1.3.14-2_amd64.deb ... 360s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 360s Selecting previously unselected package libharfbuzz0b:amd64. 360s Preparing to unpack .../073-libharfbuzz0b_8.3.0-2_amd64.deb ... 360s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 361s Selecting previously unselected package libsz2:amd64. 361s Preparing to unpack .../074-libsz2_1.1.2-1_amd64.deb ... 361s Unpacking libsz2:amd64 (1.1.2-1) ... 361s Selecting previously unselected package libhdf5-103-1:amd64. 361s Preparing to unpack .../075-libhdf5-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 361s Unpacking libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 361s Selecting previously unselected package libhdf5-cpp-103-1:amd64. 361s Preparing to unpack .../076-libhdf5-cpp-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 361s Unpacking libhdf5-cpp-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 361s Selecting previously unselected package libhdf5-fortran-102:amd64. 361s Preparing to unpack .../077-libhdf5-fortran-102_1.10.10+repack-3ubuntu1_amd64.deb ... 361s Unpacking libhdf5-fortran-102:amd64 (1.10.10+repack-3ubuntu1) ... 361s Selecting previously unselected package libhdf5-hl-100:amd64. 361s Preparing to unpack .../078-libhdf5-hl-100_1.10.10+repack-3ubuntu1_amd64.deb ... 361s Unpacking libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 361s Selecting previously unselected package libhdf5-hl-fortran-100:amd64. 361s Preparing to unpack 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Selecting previously unselected package libjpeg8:amd64. 361s Preparing to unpack .../084-libjpeg8_8c-2ubuntu11_amd64.deb ... 361s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 361s Selecting previously unselected package libjpeg8-dev:amd64. 361s Preparing to unpack .../085-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 361s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 361s Selecting previously unselected package libjpeg-dev:amd64. 361s Preparing to unpack .../086-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 361s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 361s Selecting previously unselected package libaec-dev:amd64. 361s Preparing to unpack .../087-libaec-dev_1.1.2-1_amd64.deb ... 361s Unpacking libaec-dev:amd64 (1.1.2-1) ... 361s Selecting previously unselected package libssl-dev:amd64. 361s Preparing to unpack .../088-libssl-dev_3.0.10-1ubuntu4_amd64.deb ... 361s Unpacking libssl-dev:amd64 (3.0.10-1ubuntu4) ... 361s Selecting previously unselected package libhdf5-dev. 361s Preparing to unpack .../089-libhdf5-dev_1.10.10+repack-3ubuntu1_amd64.deb ... 361s Unpacking libhdf5-dev (1.10.10+repack-3ubuntu1) ... 361s Selecting previously unselected package x11-common. 361s Preparing to unpack .../090-x11-common_1%3a7.7+23ubuntu2_all.deb ... 361s Unpacking x11-common (1:7.7+23ubuntu2) ... 361s Selecting previously unselected package libice6:amd64. 361s Preparing to unpack .../091-libice6_2%3a1.0.10-1build2_amd64.deb ... 361s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 361s Selecting previously unselected package libicu-dev:amd64. 361s Preparing to unpack .../092-libicu-dev_74.2-1ubuntu1_amd64.deb ... 361s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 362s Selecting previously unselected package libjs-bootstrap. 362s Preparing to unpack .../093-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 362s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 362s Selecting previously unselected package libjs-popper.js. 362s Preparing to unpack .../094-libjs-popper.js_1.16.1+ds-6_all.deb ... 362s 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package libjs-jquery-datatables. 362s Preparing to unpack .../100-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 362s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 362s Selecting previously unselected package libjs-sifter.js. 362s Preparing to unpack .../101-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 362s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 362s Selecting previously unselected package libjs-microplugin.js. 362s Preparing to unpack .../102-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 362s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 362s Selecting previously unselected package libjs-jquery-selectize.js. 362s Preparing to unpack .../103-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 362s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 362s Selecting previously unselected package libjs-jquery-ui. 362s Preparing to unpack .../104-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 362s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 362s Selecting previously unselected package libjs-json. 362s Preparing to unpack .../105-libjs-json_0~20221030+~1.0.8-1_all.deb ... 362s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 362s Selecting previously unselected package libjs-lunr. 362s Preparing to unpack .../106-libjs-lunr_2.3.9~dfsg-2_all.deb ... 362s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 362s Selecting previously unselected package libjs-prettify. 362s Preparing to unpack .../107-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 362s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 362s Selecting previously unselected package libkpathsea6:amd64. 362s Preparing to unpack .../108-libkpathsea6_2023.20230311.66589-9_amd64.deb ... 362s Unpacking libkpathsea6:amd64 (2023.20230311.66589-9) ... 362s Selecting previously unselected package liblapack3:amd64. 362s Preparing to unpack .../109-liblapack3_3.12.0-3_amd64.deb ... 362s Unpacking liblapack3:amd64 (3.12.0-3) ... 362s Selecting previously unselected package liblapack-dev:amd64. 362s 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Unpacking libthai0:amd64 (0.1.29-2) ... 363s Selecting previously unselected package libpango-1.0-0:amd64. 363s Preparing to unpack .../116-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 363s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 363s Selecting previously unselected package libpangoft2-1.0-0:amd64. 363s Preparing to unpack .../117-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 363s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 363s Selecting previously unselected package libpangocairo-1.0-0:amd64. 363s Preparing to unpack .../118-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 363s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 363s Selecting previously unselected package libpaper1:amd64. 363s Preparing to unpack .../119-libpaper1_1.1.29_amd64.deb ... 363s Unpacking libpaper1:amd64 (1.1.29) ... 363s Selecting previously unselected package libpaper-utils. 363s Preparing to unpack .../120-libpaper-utils_1.1.29_amd64.deb ... 363s Unpacking libpaper-utils (1.1.29) ... 363s 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unselected package libpng-dev:amd64. 363s Preparing to unpack .../126-libpng-dev_1.6.43-1_amd64.deb ... 363s Unpacking libpng-dev:amd64 (1.6.43-1) ... 363s Selecting previously unselected package libpotrace0:amd64. 363s Preparing to unpack .../127-libpotrace0_1.16-2_amd64.deb ... 363s Unpacking libpotrace0:amd64 (1.16-2) ... 363s Selecting previously unselected package libptexenc1:amd64. 363s Preparing to unpack .../128-libptexenc1_2023.20230311.66589-9_amd64.deb ... 363s Unpacking libptexenc1:amd64 (2023.20230311.66589-9) ... 363s Selecting previously unselected package libreadline-dev:amd64. 363s Preparing to unpack .../129-libreadline-dev_8.2-3_amd64.deb ... 363s Unpacking libreadline-dev:amd64 (8.2-3) ... 363s Selecting previously unselected package libsharpyuv0:amd64. 363s Preparing to unpack .../130-libsharpyuv0_1.3.2-0.4_amd64.deb ... 363s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 363s Selecting previously unselected package libsm6:amd64. 363s Preparing to unpack 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364s Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 364s Selecting previously unselected package node-bootstrap-sass. 364s Preparing to unpack .../148-node-bootstrap-sass_3.4.3-2_all.deb ... 364s Unpacking node-bootstrap-sass (3.4.3-2) ... 364s Selecting previously unselected package node-html5shiv. 364s Preparing to unpack .../149-node-html5shiv_3.7.3+dfsg-5_all.deb ... 364s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 364s Selecting previously unselected package node-normalize.css. 364s Preparing to unpack .../150-node-normalize.css_8.0.1-5_all.deb ... 364s Unpacking node-normalize.css (8.0.1-5) ... 364s Selecting previously unselected package pandoc-data. 364s Preparing to unpack .../151-pandoc-data_3.1.3-1_all.deb ... 364s Unpacking pandoc-data (3.1.3-1) ... 364s Selecting previously unselected package pandoc. 364s Preparing to unpack .../152-pandoc_3.1.3+ds-2_amd64.deb ... 364s Unpacking pandoc (3.1.3+ds-2) ... 365s Selecting previously unselected package pkgconf-bin. 365s 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unpack .../159-r-base-core_4.3.2-1build1_amd64.deb ... 365s Unpacking r-base-core (4.3.2-1build1) ... 365s Selecting previously unselected package liblzma-dev:amd64. 365s Preparing to unpack .../160-liblzma-dev_5.4.5-0.3_amd64.deb ... 365s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 365s Selecting previously unselected package r-base-dev. 365s Preparing to unpack .../161-r-base-dev_4.3.2-1build1_all.deb ... 365s Unpacking r-base-dev (4.3.2-1build1) ... 365s Selecting previously unselected package pkg-r-autopkgtest. 365s Preparing to unpack .../162-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 365s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 366s Selecting previously unselected package r-bioc-biocgenerics. 366s Preparing to unpack .../163-r-bioc-biocgenerics_0.48.1-2_all.deb ... 366s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 366s Selecting previously unselected package r-bioc-biobase. 366s Preparing to unpack .../164-r-bioc-biobase_2.62.0-1_amd64.deb ... 366s Unpacking r-bioc-biobase (2.62.0-1) ... 366s Selecting previously unselected package r-bioc-s4vectors. 366s Preparing to unpack .../165-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 366s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 366s Selecting previously unselected package r-bioc-iranges. 366s Preparing to unpack .../166-r-bioc-iranges_2.36.0-1_amd64.deb ... 366s Unpacking r-bioc-iranges (2.36.0-1) ... 366s Selecting previously unselected package r-cran-dbi. 366s Preparing to unpack .../167-r-cran-dbi_1.2.2-1_all.deb ... 366s Unpacking r-cran-dbi (1.2.2-1) ... 366s Selecting previously unselected package r-cran-bit. 366s Preparing to unpack .../168-r-cran-bit_4.0.5-1_amd64.deb ... 366s Unpacking r-cran-bit (4.0.5-1) ... 366s Selecting previously unselected package r-cran-bit64. 366s Preparing to unpack .../169-r-cran-bit64_4.0.5-1_amd64.deb ... 366s Unpacking r-cran-bit64 (4.0.5-1) ... 366s Selecting previously unselected package r-cran-rlang. 366s Preparing to unpack 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Selecting previously unselected package r-cran-rsqlite. 366s Preparing to unpack .../182-r-cran-rsqlite_2.3.4-1_amd64.deb ... 366s Unpacking r-cran-rsqlite (2.3.4-1) ... 366s Selecting previously unselected package r-cran-curl. 366s Preparing to unpack .../183-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 366s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 366s Selecting previously unselected package r-cran-jsonlite. 366s Preparing to unpack .../184-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 366s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 366s Selecting previously unselected package r-cran-mime. 366s Preparing to unpack .../185-r-cran-mime_0.12-1_amd64.deb ... 366s Unpacking r-cran-mime (0.12-1) ... 367s Selecting previously unselected package r-cran-sys. 367s Preparing to unpack .../186-r-cran-sys_3.4.2-1_amd64.deb ... 367s Unpacking r-cran-sys (3.4.2-1) ... 367s Selecting previously unselected package r-cran-askpass. 367s Preparing to unpack .../187-r-cran-askpass_1.2.0-1_amd64.deb ... 367s Unpacking r-cran-askpass (1.2.0-1) ... 367s Selecting previously unselected package r-cran-openssl. 367s Preparing to unpack .../188-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 367s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 367s Selecting previously unselected package r-cran-r6. 367s Preparing to unpack .../189-r-cran-r6_2.5.1-1_all.deb ... 367s Unpacking r-cran-r6 (2.5.1-1) ... 367s Selecting previously unselected package r-cran-httr. 367s Preparing to unpack .../190-r-cran-httr_1.4.7+dfsg-1_all.deb ... 367s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 367s Selecting previously unselected package r-cran-png. 367s Preparing to unpack .../191-r-cran-png_0.1-8-1_amd64.deb ... 367s Unpacking r-cran-png (0.1-8-1) ... 367s Selecting previously unselected package r-bioc-zlibbioc. 367s Preparing to unpack .../192-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 367s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 367s Selecting previously unselected package r-bioc-xvector. 367s Preparing to unpack .../193-r-bioc-xvector_0.42.0-1_amd64.deb ... 367s Unpacking r-bioc-xvector (0.42.0-1) ... 367s Selecting previously unselected package r-cran-bitops. 367s Preparing to unpack .../194-r-cran-bitops_1.0-7-1_amd64.deb ... 367s Unpacking r-cran-bitops (1.0-7-1) ... 367s Selecting previously unselected package r-cran-rcurl. 367s Preparing to unpack .../195-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 367s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 367s Selecting previously unselected package r-bioc-genomeinfodbdata. 367s Preparing to unpack .../196-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 367s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 367s Selecting previously unselected package r-bioc-genomeinfodb. 367s Preparing to unpack .../197-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 367s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 367s Selecting previously unselected package r-cran-crayon. 367s Preparing to unpack .../198-r-cran-crayon_1.5.2-1_all.deb ... 367s Unpacking r-cran-crayon (1.5.2-1) ... 367s Selecting previously unselected package r-bioc-biostrings. 367s Preparing to unpack .../199-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 367s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 367s Selecting previously unselected package r-bioc-keggrest. 367s Preparing to unpack .../200-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 367s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 367s Selecting previously unselected package r-bioc-annotationdbi. 367s Preparing to unpack .../201-r-bioc-annotationdbi_1.64.1-1_all.deb ... 367s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 367s Selecting previously unselected package r-cran-r.methodss3. 367s Preparing to unpack .../202-r-cran-r.methodss3_1.8.2-1_all.deb ... 367s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 367s Selecting previously unselected package r-cran-r.oo. 367s Preparing to unpack .../203-r-cran-r.oo_1.26.0-1_all.deb ... 367s Unpacking r-cran-r.oo (1.26.0-1) ... 367s Selecting previously unselected package r-cran-r.utils. 367s Preparing to unpack .../204-r-cran-r.utils_2.12.3-1_all.deb ... 367s Unpacking r-cran-r.utils (2.12.3-1) ... 368s Selecting previously unselected package r-cran-matrixstats. 368s Preparing to unpack .../205-r-cran-matrixstats_1.2.0-1_amd64.deb ... 368s Unpacking r-cran-matrixstats (1.2.0-1) ... 368s Selecting previously unselected package r-bioc-aroma.light. 368s Preparing to unpack .../206-r-bioc-aroma.light_3.32.0-1_all.deb ... 368s Unpacking r-bioc-aroma.light (3.32.0-1) ... 368s Selecting previously unselected package r-cran-generics. 368s Preparing to unpack .../207-r-cran-generics_0.1.3-1_all.deb ... 368s Unpacking r-cran-generics (0.1.3-1) ... 368s Selecting previously unselected package r-cran-magrittr. 368s Preparing to unpack .../208-r-cran-magrittr_2.0.3-1_amd64.deb ... 368s Unpacking r-cran-magrittr (2.0.3-1) ... 368s Selecting previously unselected package r-cran-fansi. 368s Preparing to unpack .../209-r-cran-fansi_1.0.5-1_amd64.deb ... 368s Unpacking r-cran-fansi (1.0.5-1) ... 368s Selecting previously unselected package r-cran-utf8. 368s Preparing to unpack .../210-r-cran-utf8_1.2.4-1_amd64.deb ... 368s Unpacking r-cran-utf8 (1.2.4-1) ... 368s Selecting previously unselected package r-cran-pillar. 368s Preparing to unpack .../211-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 368s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 368s Selecting previously unselected package r-cran-tibble. 368s Preparing to unpack .../212-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 368s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 368s Selecting previously unselected package r-cran-withr. 368s Preparing to unpack .../213-r-cran-withr_2.5.0-1_all.deb ... 368s Unpacking r-cran-withr (2.5.0-1) ... 368s Selecting previously unselected package r-cran-tidyselect. 368s Preparing to unpack .../214-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 368s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 368s Selecting previously unselected package r-cran-dplyr. 368s Preparing to unpack .../215-r-cran-dplyr_1.1.4-1_amd64.deb ... 368s Unpacking r-cran-dplyr (1.1.4-1) ... 368s Selecting previously unselected package r-cran-purrr. 368s Preparing to unpack .../216-r-cran-purrr_1.0.2-1_amd64.deb ... 368s Unpacking r-cran-purrr (1.0.2-1) ... 368s Selecting previously unselected package r-cran-stringi. 368s Preparing to unpack .../217-r-cran-stringi_1.8.3-1_amd64.deb ... 368s Unpacking r-cran-stringi (1.8.3-1) ... 368s Selecting previously unselected package r-cran-stringr. 368s Preparing to unpack .../218-r-cran-stringr_1.5.1-1_all.deb ... 368s Unpacking r-cran-stringr (1.5.1-1) ... 368s Selecting previously unselected package r-cran-tidyr. 368s Preparing to unpack .../219-r-cran-tidyr_1.3.1-1_amd64.deb ... 368s Unpacking r-cran-tidyr (1.3.1-1) ... 368s Selecting previously unselected package r-cran-dbplyr. 368s Preparing to unpack .../220-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 368s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 368s Selecting previously unselected package r-cran-filelock. 368s Preparing to unpack .../221-r-cran-filelock_1.0.3-1_amd64.deb ... 368s Unpacking r-cran-filelock (1.0.3-1) ... 368s Selecting previously unselected package r-bioc-biocfilecache. 368s Preparing to unpack .../222-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 368s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 368s Selecting previously unselected package r-bioc-biocio. 368s Preparing to unpack .../223-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 368s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 368s Selecting previously unselected package r-cran-formatr. 368s Preparing to unpack .../224-r-cran-formatr_1.14-1_all.deb ... 368s Unpacking r-cran-formatr (1.14-1) ... 368s Selecting previously unselected package r-cran-lambda.r. 368s Preparing to unpack .../225-r-cran-lambda.r_1.2.4-2build1_all.deb ... 368s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 368s Selecting previously unselected package r-cran-futile.options. 368s Preparing to unpack .../226-r-cran-futile.options_1.0.1-3build1_all.deb ... 368s Unpacking r-cran-futile.options (1.0.1-3build1) ... 368s Selecting previously unselected package r-cran-futile.logger. 368s Preparing to unpack .../227-r-cran-futile.logger_1.4.3-4build1_all.deb ... 368s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 368s Selecting previously unselected package r-cran-snow. 369s Preparing to unpack .../228-r-cran-snow_1%3a0.4.4-2_all.deb ... 369s Unpacking r-cran-snow (1:0.4.4-2) ... 369s Selecting previously unselected package r-cran-codetools. 369s Preparing to unpack .../229-r-cran-codetools_0.2-19-1_all.deb ... 369s Unpacking r-cran-codetools (0.2-19-1) ... 369s Selecting previously unselected package r-cran-bh. 369s Preparing to unpack .../230-r-cran-bh_1.84.0-1_all.deb ... 369s Unpacking r-cran-bh (1.84.0-1) ... 369s Selecting previously unselected package r-bioc-biocparallel. 369s Preparing to unpack .../231-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 369s Unpacking r-bioc-biocparallel (1.36.0-1) ... 369s Selecting previously unselected package r-cran-base64enc. 369s Preparing to unpack .../232-r-cran-base64enc_0.1-3-3_amd64.deb ... 369s Unpacking r-cran-base64enc (0.1-3-3) ... 369s Selecting previously unselected package r-cran-digest. 369s Preparing to unpack .../233-r-cran-digest_0.6.34-1_amd64.deb ... 369s Unpacking r-cran-digest (0.6.34-1) ... 369s Selecting previously unselected package r-cran-ellipsis. 369s Preparing to unpack .../234-r-cran-ellipsis_0.3.2-2_amd64.deb ... 369s Unpacking r-cran-ellipsis (0.3.2-2) ... 369s Selecting previously unselected package r-cran-htmltools. 369s Preparing to unpack .../235-r-cran-htmltools_0.5.7-1_amd64.deb ... 369s Unpacking r-cran-htmltools (0.5.7-1) ... 369s Selecting previously unselected package r-cran-evaluate. 369s Preparing to unpack .../236-r-cran-evaluate_0.23-1_all.deb ... 369s Unpacking r-cran-evaluate (0.23-1) ... 369s Selecting previously unselected package r-cran-xfun. 369s Preparing to unpack .../237-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 369s Unpacking r-cran-xfun (0.41+dfsg-1) ... 369s Selecting previously unselected package r-cran-highr. 369s Preparing to unpack .../238-r-cran-highr_0.10+dfsg-1_all.deb ... 369s Unpacking r-cran-highr (0.10+dfsg-1) ... 369s Selecting previously unselected package r-cran-yaml. 369s Preparing to unpack .../239-r-cran-yaml_2.3.8-1_amd64.deb ... 369s Unpacking r-cran-yaml (2.3.8-1) ... 369s Selecting previously unselected package libjs-mathjax. 369s Preparing to unpack .../240-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 369s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 370s Selecting previously unselected package r-cran-knitr. 370s Preparing to unpack .../241-r-cran-knitr_1.45+dfsg-1_all.deb ... 370s Unpacking r-cran-knitr (1.45+dfsg-1) ... 370s Selecting previously unselected package r-cran-jquerylib. 370s Preparing to unpack .../242-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 370s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 370s Selecting previously unselected package r-cran-fs. 370s Preparing to unpack .../243-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 370s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 370s Selecting previously unselected package r-cran-rappdirs. 370s Preparing to unpack .../244-r-cran-rappdirs_0.3.3-1_amd64.deb ... 370s Unpacking r-cran-rappdirs (0.3.3-1) ... 370s Selecting previously unselected package r-cran-sass. 370s Preparing to unpack .../245-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 370s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 370s Selecting previously unselected package r-cran-bslib. 370s Preparing to unpack .../246-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 370s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 370s Selecting previously unselected package r-cran-fontawesome. 370s Preparing to unpack .../247-r-cran-fontawesome_0.5.2-1_all.deb ... 370s Unpacking r-cran-fontawesome (0.5.2-1) ... 370s Selecting previously unselected package r-cran-tinytex. 370s Preparing to unpack .../248-r-cran-tinytex_0.49-1_all.deb ... 370s Unpacking r-cran-tinytex (0.49-1) ... 370s Selecting previously unselected package libjs-modernizr. 370s Preparing to unpack .../249-libjs-modernizr_2.6.2+ds1-5_all.deb ... 370s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 370s Selecting previously unselected package r-cran-littler. 370s Preparing to unpack .../250-r-cran-littler_0.3.19-1_amd64.deb ... 370s Unpacking r-cran-littler (0.3.19-1) ... 370s Selecting previously unselected package r-cran-pkgkitten. 370s Preparing to unpack .../251-r-cran-pkgkitten_0.2.3-1_all.deb ... 370s Unpacking r-cran-pkgkitten (0.2.3-1) ... 370s Selecting previously unselected package r-cran-rcpp. 370s Preparing to unpack .../252-r-cran-rcpp_1.0.12-1_amd64.deb ... 370s Unpacking r-cran-rcpp (1.0.12-1) ... 370s Selecting previously unselected package r-cran-later. 370s Preparing to unpack .../253-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 370s Unpacking r-cran-later (1.3.2+dfsg-1) ... 370s Selecting previously unselected package r-cran-promises. 370s Preparing to unpack .../254-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 370s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 371s Selecting previously unselected package r-cran-httpuv. 371s Preparing to unpack .../255-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 371s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 371s Selecting previously unselected package r-cran-xtable. 371s Preparing to unpack .../256-r-cran-xtable_1%3a1.8-4-2_all.deb ... 371s Unpacking r-cran-xtable (1:1.8-4-2) ... 371s Selecting previously unselected package r-cran-sourcetools. 371s Preparing to unpack .../257-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 371s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 371s Selecting previously unselected package r-cran-commonmark. 371s Preparing to unpack .../258-r-cran-commonmark_1.9.1-1_amd64.deb ... 371s Unpacking r-cran-commonmark (1.9.1-1) ... 371s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 371s Preparing to unpack .../259-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 371s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 371s Selecting previously unselected package r-cran-shiny. 371s Preparing to unpack .../260-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 371s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 371s Selecting previously unselected package r-cran-rmarkdown. 371s Preparing to unpack .../261-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 371s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 371s Selecting previously unselected package r-cran-bookdown. 371s Preparing to unpack .../262-r-cran-bookdown_0.37+dfsg-1_all.deb ... 371s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 371s Selecting previously unselected package r-cran-biocmanager. 371s Preparing to unpack .../263-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 371s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 371s Selecting previously unselected package tex-common. 371s Preparing to unpack .../264-tex-common_6.18_all.deb ... 371s Unpacking tex-common (6.18) ... 371s Selecting previously unselected package t1utils. 371s Preparing to unpack .../265-t1utils_1.41-4build2_amd64.deb ... 371s Unpacking t1utils (1.41-4build2) ... 371s Selecting previously unselected package texlive-binaries. 371s Preparing to unpack .../266-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 371s Unpacking texlive-binaries (2023.20230311.66589-9) ... 371s Selecting previously unselected package texlive-base. 371s Preparing to unpack .../267-texlive-base_2023.20240207-1_all.deb ... 371s Unpacking texlive-base (2023.20240207-1) ... 373s Selecting previously unselected package texlive-latex-base. 373s Preparing to unpack .../268-texlive-latex-base_2023.20240207-1_all.deb ... 373s Unpacking texlive-latex-base (2023.20240207-1) ... 373s Selecting previously unselected package texlive-bibtex-extra. 373s Preparing to unpack .../269-texlive-bibtex-extra_2023.20240207-1_all.deb ... 373s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 377s Selecting previously unselected package r-bioc-biocstyle. 377s Preparing to unpack .../270-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 377s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 377s Selecting previously unselected package r-cran-xml. 377s Preparing to unpack .../271-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 377s Unpacking r-cran-xml (3.99-0.16.1-1) ... 377s Selecting previously unselected package r-cran-hms. 377s Preparing to unpack .../272-r-cran-hms_1.1.3-1_all.deb ... 377s Unpacking r-cran-hms (1.1.3-1) ... 377s Selecting previously unselected package r-cran-prettyunits. 377s Preparing to unpack .../273-r-cran-prettyunits_1.2.0-1_all.deb ... 377s Unpacking r-cran-prettyunits (1.2.0-1) ... 377s Selecting previously unselected package r-cran-progress. 377s Preparing to unpack .../274-r-cran-progress_1.2.3-1_all.deb ... 377s Unpacking r-cran-progress (1.2.3-1) ... 377s Selecting previously unselected package r-cran-xml2. 377s Preparing to unpack .../275-r-cran-xml2_1.3.6-1_amd64.deb ... 377s Unpacking r-cran-xml2 (1.3.6-1) ... 377s Selecting previously unselected package r-bioc-biomart. 377s Preparing to unpack .../276-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 377s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 377s Selecting previously unselected package r-bioc-genomicranges. 377s Preparing to unpack .../277-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 377s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 377s Selecting previously unselected package r-bioc-rhtslib. 377s Preparing to unpack .../278-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 377s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 377s Selecting previously unselected package r-bioc-rsamtools. 377s Preparing to unpack .../279-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 377s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 377s Selecting previously unselected package r-bioc-matrixgenerics. 377s Preparing to unpack .../280-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 377s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 377s Selecting previously unselected package r-cran-lattice. 377s Preparing to unpack .../281-r-cran-lattice_0.22-5-1_amd64.deb ... 377s Unpacking r-cran-lattice (0.22-5-1) ... 377s Selecting previously unselected package r-cran-matrix. 377s Preparing to unpack .../282-r-cran-matrix_1.6-5-1_amd64.deb ... 377s Unpacking r-cran-matrix (1.6-5-1) ... 377s Selecting previously unselected package r-cran-abind. 377s Preparing to unpack .../283-r-cran-abind_1.4-5-2_all.deb ... 377s Unpacking r-cran-abind (1.4-5-2) ... 377s Selecting previously unselected package r-bioc-s4arrays. 377s Preparing to unpack .../284-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 377s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 378s Selecting previously unselected package r-bioc-sparsearray. 378s Preparing to unpack .../285-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 378s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 378s Selecting previously unselected package r-bioc-delayedarray. 378s Preparing to unpack .../286-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 378s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 378s Selecting previously unselected package r-bioc-summarizedexperiment. 378s Preparing to unpack .../287-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 378s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 378s Selecting previously unselected package r-bioc-genomicalignments. 378s Preparing to unpack .../288-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 378s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 378s Selecting previously unselected package r-cran-rjson. 378s Preparing to unpack .../289-r-cran-rjson_0.2.21-1_amd64.deb ... 378s Unpacking r-cran-rjson (0.2.21-1) ... 378s Selecting previously unselected package r-cran-restfulr. 378s Preparing to unpack .../290-r-cran-restfulr_0.0.15-1_amd64.deb ... 378s Unpacking r-cran-restfulr (0.0.15-1) ... 378s Selecting previously unselected package r-bioc-rtracklayer. 378s Preparing to unpack .../291-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 378s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 378s Selecting previously unselected package r-bioc-bsgenome. 378s Preparing to unpack .../292-r-bioc-bsgenome_1.70.2-1_all.deb ... 378s Unpacking r-bioc-bsgenome (1.70.2-1) ... 378s Selecting previously unselected package r-bioc-dnacopy. 378s Preparing to unpack .../293-r-bioc-dnacopy_1.76.0-1_amd64.deb ... 378s Unpacking r-bioc-dnacopy (1.76.0-1) ... 378s Selecting previously unselected package r-bioc-genomicfeatures. 378s Preparing to unpack .../294-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 378s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 378s Selecting previously unselected package r-bioc-org.hs.eg.db. 378s Preparing to unpack .../295-r-bioc-org.hs.eg.db_3.18.0-1_all.deb ... 378s Unpacking r-bioc-org.hs.eg.db (3.18.0-1) ... 380s Selecting previously unselected package r-bioc-variantannotation. 380s Preparing to unpack .../296-r-bioc-variantannotation_1.48.1-1_amd64.deb ... 380s Unpacking r-bioc-variantannotation (1.48.1-1) ... 380s Selecting previously unselected package r-cran-rcolorbrewer. 380s Preparing to unpack .../297-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 380s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 380s Selecting previously unselected package r-cran-data.table. 380s Preparing to unpack .../298-r-cran-data.table_1.14.10+dfsg-1_amd64.deb ... 380s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 380s Selecting previously unselected package r-cran-gtable. 380s Preparing to unpack .../299-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 380s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 380s Selecting previously unselected package r-cran-isoband. 380s Preparing to unpack .../300-r-cran-isoband_0.2.7-1_amd64.deb ... 380s Unpacking r-cran-isoband (0.2.7-1) ... 380s Selecting previously unselected package r-cran-mass. 380s Preparing to unpack .../301-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 380s Unpacking r-cran-mass (7.3-60.0.1-1) ... 380s Selecting previously unselected package r-cran-nlme. 380s Preparing to unpack .../302-r-cran-nlme_3.1.164-1_amd64.deb ... 380s Unpacking r-cran-nlme (3.1.164-1) ... 380s Selecting previously unselected package r-cran-mgcv. 380s Preparing to unpack .../303-r-cran-mgcv_1.9-1-1_amd64.deb ... 380s Unpacking r-cran-mgcv (1.9-1-1) ... 380s Selecting previously unselected package r-cran-farver. 380s Preparing to unpack .../304-r-cran-farver_2.1.1-1_amd64.deb ... 380s Unpacking r-cran-farver (2.1.1-1) ... 380s Selecting previously unselected package r-cran-labeling. 380s Preparing to unpack .../305-r-cran-labeling_0.4.3-1_all.deb ... 380s Unpacking r-cran-labeling (0.4.3-1) ... 380s Selecting previously unselected package r-cran-colorspace. 380s Preparing to unpack .../306-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 380s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 380s Selecting previously unselected package r-cran-munsell. 380s Preparing to unpack .../307-r-cran-munsell_0.5.0-2build1_all.deb ... 380s Unpacking r-cran-munsell (0.5.0-2build1) ... 380s Selecting previously unselected package r-cran-viridislite. 380s Preparing to unpack .../308-r-cran-viridislite_0.4.2-2_all.deb ... 380s Unpacking r-cran-viridislite (0.4.2-2) ... 380s Selecting previously unselected package r-cran-scales. 380s Preparing to unpack .../309-r-cran-scales_1.3.0-1_all.deb ... 380s Unpacking r-cran-scales (1.3.0-1) ... 380s Selecting previously unselected package r-cran-ggplot2. 380s Preparing to unpack .../310-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 380s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 381s Selecting previously unselected package r-cran-gridextra. 381s Preparing to unpack .../311-r-cran-gridextra_2.3-3build1_all.deb ... 381s Unpacking r-cran-gridextra (2.3-3build1) ... 381s Selecting previously unselected package r-cran-vgam. 381s Preparing to unpack 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388s Setting up r-cran-fs (1.6.3+dfsg-1) ... 388s Setting up r-cran-rcpp (1.0.12-1) ... 388s Setting up r-cran-curl (5.2.0+dfsg-1) ... 388s Setting up r-cran-codetools (0.2-19-1) ... 388s Setting up g++-13 (13.2.0-17ubuntu2) ... 388s Setting up r-cran-brio (1.1.4-1) ... 388s Setting up r-cran-diffobj (0.3.5-1) ... 388s Setting up r-bioc-biocgenerics (0.48.1-2) ... 388s Setting up r-cran-rlang (1.1.3-1) ... 388s Setting up r-cran-matrixstats (1.2.0-1) ... 388s Setting up r-cran-listenv (0.9.1+dfsg-1) ... 388s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 388s Setting up r-cran-xfun (0.41+dfsg-1) ... 388s Setting up r-cran-vgam (1.1-9-1) ... 388s Setting up r-cran-sys (3.4.2-1) ... 388s Setting up r-cran-plogr (0.2.0-3build1) ... 388s Setting up r-cran-withr (2.5.0-1) ... 388s Setting up r-cran-processx (3.8.3-1) ... 388s Setting up r-cran-mime (0.12-1) ... 388s Setting up r-cran-praise (1.0.0-4build1) ... 388s Setting up r-cran-generics (0.1.3-1) ... 388s Setting up r-cran-base64enc (0.1-3-3) ... 388s Setting up r-cran-abind (1.4-5-2) ... 388s Setting up r-cran-digest (0.6.34-1) ... 388s Setting up r-cran-yaml (2.3.8-1) ... 388s Setting up r-cran-lambda.r (1.2.4-2build1) ... 388s Setting up r-cran-evaluate (0.23-1) ... 388s Setting up r-cran-dbi (1.2.2-1) ... 388s Setting up r-cran-highr (0.10+dfsg-1) ... 388s Setting up r-cran-prettyunits (1.2.0-1) ... 388s Setting up r-cran-fansi (1.0.5-1) ... 388s Setting up r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 388s Setting up r-cran-mass (7.3-60.0.1-1) ... 388s Setting up r-cran-mclust (6.0.1-1) ... 388s Setting up r-cran-snow (1:0.4.4-2) ... 388s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 388s Setting up r-cran-glue (1.7.0-1) ... 388s Setting up r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 388s Setting up r-cran-bit (4.0.5-1) ... 388s Setting up r-cran-xtable (1:1.8-4-2) ... 388s Setting up r-cran-cli (3.6.2-1) ... 388s Setting up gfortran (4:13.2.0-7ubuntu1) ... 388s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 388s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 388s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 388s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 388s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 388s Setting up r-cran-bitops (1.0-7-1) ... 388s Setting up r-cran-rprojroot (2.0.4-1) ... 388s Setting up r-cran-bit64 (4.0.5-1) ... 388s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 388s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 388s Setting up r-cran-askpass (1.2.0-1) ... 388s Setting up r-cran-fastmap (1.1.1-1) ... 388s Setting up r-cran-png (0.1-8-1) ... 388s Setting up r-cran-r.methodss3 (1.8.2-1) ... 388s Setting up r-bioc-biobase (2.62.0-1) ... 388s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 388s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 388s Setting up r-cran-getopt (1.20.4-1) ... 388s Setting up r-cran-utf8 (1.2.4-1) ... 388s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 388s Setting up r-cran-parallelly (1.37.1-1) ... 388s Setting up r-cran-stringi (1.8.3-1) ... 388s Setting up texlive-latex-base (2023.20240207-1) ... 388s Setting up r-cran-rex (1.2.1-1) ... 388s Setting up r-cran-markdown (1.12+dfsg-1) ... 388s Setting up r-cran-cpp11 (0.4.7-1) ... 388s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 388s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 388s Setting up r-cran-isoband (0.2.7-1) ... 388s Setting up r-cran-futile.logger (1.4.3-4build1) ... 388s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 388s Setting up r-cran-later (1.3.2+dfsg-1) ... 388s Setting up r-cran-matrix (1.6-5-1) ... 388s Setting up r-cran-tinytex (0.49-1) ... 388s Setting up r-cran-knitr (1.45+dfsg-1) ... 388s Setting up r-cran-mgcv (1.9-1-1) ... 388s Setting up g++ (4:13.2.0-7ubuntu1) ... 388s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 388s Setting up r-bioc-dnacopy (1.76.0-1) ... 388s Setting up r-cran-cachem (1.0.8-1) ... 388s Setting up build-essential (12.10ubuntu1) ... 388s Setting up r-bioc-iranges (2.36.0-1) ... 388s Setting up r-cran-rjson (0.2.21-1) ... 388s Setting up r-cran-globals (0.16.2-1) ... 388s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 388s Setting up r-cran-restfulr (0.0.15-1) ... 388s Setting up r-cran-optparse (1.7.4-1) ... 388s Setting up r-cran-vctrs (0.6.5-1) ... 388s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 388s Setting up r-cran-ellipsis (0.3.2-2) ... 388s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 388s Setting up r-base-dev (4.3.2-1build1) ... 388s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 388s Setting up r-cran-stringr (1.5.1-1) ... 388s Setting up r-bioc-biocparallel (1.36.0-1) ... 388s Setting up r-cran-callr (3.7.3-2) ... 388s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 388s Setting up r-cran-desc (1.4.3-1) ... 388s Setting up r-cran-xml2 (1.3.6-1) ... 388s Setting up r-bioc-rhdf5 (2.46.1+dfsg-1) ... 388s Setting up r-cran-munsell (0.5.0-2build1) ... 388s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 388s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 388s Setting up r-cran-r.oo (1.26.0-1) ... 388s Setting up r-cran-future (1.33.1+dfsg-1) ... 388s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 388s Setting up texlive-bibtex-extra (2023.20240207-1) ... 388s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 388s Setting up r-cran-httr (1.4.7+dfsg-1) ... 388s Setting up r-cran-gridextra (2.3-3build1) ... 388s Setting up r-cran-hms (1.1.3-1) ... 388s Setting up r-cran-scales (1.3.0-1) ... 388s Setting up r-cran-memoise (2.0.1-1) ... 388s Setting up r-cran-covr (3.6.4+dfsg-1) ... 388s Setting up r-cran-promises (1.2.1+dfsg-1) ... 388s Setting up r-cran-purrr (1.0.2-1) ... 388s Setting up r-cran-blob (1.2.4-1) ... 388s Setting up r-cran-htmltools (0.5.7-1) ... 388s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 388s Setting up r-bioc-xvector (0.42.0-1) ... 388s Setting up r-cran-pkgbuild (1.4.3-1) ... 388s Setting up r-cran-sass (0.4.8+dfsg-1) ... 388s Setting up r-cran-dplyr (1.1.4-1) ... 388s Setting up r-cran-rsqlite (2.3.4-1) ... 388s Setting up r-cran-progress (1.2.3-1) ... 388s Setting up r-cran-pkgload (1.3.4-1) ... 388s Setting up r-cran-r.utils (2.12.3-1) ... 388s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 388s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 388s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 388s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 388s Setting up r-cran-rematch2 (2.1.2-2build1) ... 388s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 388s Setting up r-cran-fontawesome (0.5.2-1) ... 388s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 388s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 388s Setting up r-cran-waldo (0.5.2-1build1) ... 388s Setting up r-cran-tidyr (1.3.1-1) ... 388s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 388s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 388s Setting up r-bioc-aroma.light (3.32.0-1) ... 388s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 388s Setting up r-cran-r.cache (0.16.0-1) ... 388s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 388s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 388s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 388s Setting up r-bioc-annotationdbi (1.64.1-1) ... 388s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 388s Setting up r-cran-testthat (3.2.1-1) ... 388s Setting up r-cran-pscbs (0.66.0-2) ... 388s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 388s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 388s Setting up r-bioc-genomicalignments (1.38.2-1) ... 388s Setting up r-cran-bookdown (0.37+dfsg-1) ... 388s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ... 388s Setting up r-bioc-rtracklayer (1.62.0-1) ... 388s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 388s Setting up r-bioc-bsgenome (1.70.2-1) ... 388s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 388s Setting up r-bioc-variantannotation (1.48.1-1) ... 388s Setting up r-bioc-purecn (2.8.1+dfsg-1) ... 388s Processing triggers for libc-bin (2.39-0ubuntu2) ... 388s Processing triggers for man-db (2.12.0-3) ... 388s Processing triggers for install-info (7.1-3) ... 388s Processing triggers for tex-common (6.18) ... 389s Running updmap-sys. This may take some time... done. 389s Running mktexlsr /var/lib/texmf ... done. 389s Building format(s) --all. 419s This may take some time... done. 424s Reading package lists... 425s Building dependency tree... 425s Reading state information... 425s Starting pkgProblemResolver with broken count: 0 425s Starting 2 pkgProblemResolver with broken count: 0 425s Done 425s The following NEW packages will be installed: 425s autopkgtest-satdep 425s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 425s Need to get 0 B/700 B of archives. 425s After this operation, 0 B of additional disk space will be used. 425s Get:1 /tmp/autopkgtest.P1WAyZ/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 426s Selecting previously unselected package autopkgtest-satdep. 426s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 126156 files and directories currently installed.) 426s Preparing to unpack .../2-autopkgtest-satdep.deb ... 426s Unpacking autopkgtest-satdep (0) ... 426s Setting up autopkgtest-satdep (0) ... 428s (Reading database ... 126156 files and directories currently installed.) 428s Removing autopkgtest-satdep (0) ... 428s autopkgtest [13:12:44]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 428s autopkgtest [13:12:44]: test pkg-r-autopkgtest: [----------------------- 428s Test: Try to load the R library PureCN 428s 428s R version 4.3.2 (2023-10-31) -- "Eye Holes" 428s Copyright (C) 2023 The R Foundation for Statistical Computing 428s Platform: x86_64-pc-linux-gnu (64-bit) 428s 428s R is free software and comes with ABSOLUTELY NO WARRANTY. 428s You are welcome to redistribute it under certain conditions. 428s Type 'license()' or 'licence()' for distribution details. 428s 428s R is a collaborative project with many contributors. 428s Type 'contributors()' for more information and 428s 'citation()' on how to cite R or R packages in publications. 428s 428s Type 'demo()' for some demos, 'help()' for on-line help, or 428s 'help.start()' for an HTML browser interface to help. 428s Type 'q()' to quit R. 428s 428s > library('PureCN') 428s Loading required package: DNAcopy 428s Loading required package: VariantAnnotation 428s Loading required package: BiocGenerics 428s 428s Attaching package: ‘BiocGenerics’ 428s 428s The following objects are masked from ‘package:stats’: 428s 428s IQR, mad, sd, var, xtabs 428s 428s The following objects are masked from ‘package:base’: 428s 428s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 428s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 428s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 428s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 428s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 428s table, tapply, union, unique, unsplit, which.max, which.min 428s 428s Loading required package: MatrixGenerics 428s Loading required package: matrixStats 428s 428s Attaching package: ‘MatrixGenerics’ 428s 428s The following objects are masked from ‘package:matrixStats’: 428s 428s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 428s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 428s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 428s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 428s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 428s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 428s colWeightedMeans, colWeightedMedians, colWeightedSds, 428s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 428s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 428s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 428s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 428s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 428s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 428s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 428s rowWeightedSds, rowWeightedVars 428s 428s Loading required package: GenomeInfoDb 428s Loading required package: S4Vectors 428s Loading required package: stats4 429s 429s Attaching package: ‘S4Vectors’ 429s 429s The following object is masked from ‘package:utils’: 429s 429s findMatches 429s 429s The following objects are masked from ‘package:base’: 429s 429s expand.grid, I, unname 429s 429s Loading required package: IRanges 430s Loading required package: GenomicRanges 430s Loading required package: SummarizedExperiment 430s Loading required package: Biobase 431s Welcome to Bioconductor 431s 431s Vignettes contain introductory material; view with 431s 'browseVignettes()'. To cite Bioconductor, see 431s 'citation("Biobase")', and for packages 'citation("pkgname")'. 431s 431s 431s Attaching package: ‘Biobase’ 431s 431s The following object is masked from ‘package:MatrixGenerics’: 431s 431s rowMedians 431s 431s The following objects are masked from ‘package:matrixStats’: 431s 431s anyMissing, rowMedians 431s 433s Loading required package: Rsamtools 433s Loading required package: Biostrings 433s Loading required package: XVector 434s 434s Attaching package: ‘Biostrings’ 434s 434s The following object is masked from ‘package:base’: 434s 434s strsplit 434s 439s 439s Attaching package: ‘VariantAnnotation’ 439s 439s The following object is masked from ‘package:base’: 439s 439s tabulate 439s 440s > 440s > 440s Other tests are currently unsupported! 440s They will be progressively added. 440s autopkgtest [13:12:56]: test pkg-r-autopkgtest: -----------------------] 440s autopkgtest [13:12:56]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 440s pkg-r-autopkgtest PASS 440s autopkgtest [13:12:56]: @@@@@@@@@@@@@@@@@@@@ summary 440s pkg-r-autopkgtest PASS 464s Creating nova instance adt-noble-i386-r-bioc-purecn-20240321-130535-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240320.img (UUID 3219a3f4-90ea-47d9-8dfb-3912f2ae9f95)...