0s autopkgtest [03:31:36]: starting date and time: 2024-03-22 03:31:36+0000 0s autopkgtest [03:31:36]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [03:31:36]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.kzv7myv_/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-organismdbi --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-89.secgroup --name adt-noble-i386-r-bioc-organismdbi-20240322-033136-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 833s autopkgtest [03:45:29]: testbed dpkg architecture: amd64 833s autopkgtest [03:45:29]: testbed apt version: 2.7.12 833s autopkgtest [03:45:29]: test architecture: i386 833s autopkgtest [03:45:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 833s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 833s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 833s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 833s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3757 kB] 833s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 833s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [460 kB] 833s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [696 kB] 833s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 833s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 833s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 833s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 833s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1277 kB] 833s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4267 kB] 833s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 833s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 833s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 833s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 837s Fetched 11.3 MB in 2s (7355 kB/s) 837s Reading package lists... 840s Reading package lists... 840s Building dependency tree... 840s Reading state information... 841s Calculating upgrade... 841s The following packages will be upgraded: 841s cloud-init fonts-ubuntu-console python3-markupsafe 841s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 841s Need to get 629 kB of archives. 841s After this operation, 11.3 kB disk space will be freed. 841s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 841s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 841s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 841s Preconfiguring packages ... 841s Fetched 629 kB in 0s (21.0 MB/s) 842s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 842s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 842s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 842s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 842s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 842s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 842s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 842s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 842s Setting up cloud-init (24.1.2-0ubuntu1) ... 843s Setting up python3-markupsafe (2.1.5-1build1) ... 844s Processing triggers for man-db (2.12.0-3) ... 844s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 845s Reading package lists... 845s Building dependency tree... 845s Reading state information... 845s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 846s sh: Attempting to set up Debian/Ubuntu apt sources automatically 846s sh: Distribution appears to be Ubuntu 847s Reading package lists... 847s Building dependency tree... 847s Reading state information... 847s eatmydata is already the newest version (131-1). 847s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 847s Reading package lists... 848s Building dependency tree... 848s Reading state information... 848s dbus is already the newest version (1.14.10-4ubuntu1). 848s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 848s Reading package lists... 848s Building dependency tree... 848s Reading state information... 849s rng-tools-debian is already the newest version (2.4). 849s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 849s Reading package lists... 849s Building dependency tree... 849s Reading state information... 849s The following packages will be REMOVED: 849s cloud-init* python3-configobj* python3-debconf* 850s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 850s After this operation, 3256 kB disk space will be freed. 850s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 850s Removing cloud-init (24.1.2-0ubuntu1) ... 850s Removing python3-configobj (5.0.8-3) ... 850s Removing python3-debconf (1.5.86) ... 850s Processing triggers for man-db (2.12.0-3) ... 850s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 850s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 851s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 851s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 851s invoke-rc.d: policy-rc.d denied execution of try-restart. 851s Reading package lists... 851s Building dependency tree... 851s Reading state information... 852s linux-generic is already the newest version (6.8.0-11.11+1). 852s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 852s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 852s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 852s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 854s Reading package lists... 854s Reading package lists... 854s Building dependency tree... 854s Reading state information... 855s Calculating upgrade... 855s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 855s Reading package lists... 856s Building dependency tree... 856s Reading state information... 856s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 856s autopkgtest [03:45:52]: rebooting testbed after setup commands that affected boot 875s autopkgtest [03:46:11]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 876s autopkgtest [03:46:12]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-organismdbi 877s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-organismdbi 1.44.0+dfsg-1 (dsc) [2341 B] 877s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-organismdbi 1.44.0+dfsg-1 (tar) [104 kB] 877s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-organismdbi 1.44.0+dfsg-1 (diff) [5324 B] 877s gpgv: Signature made Fri Dec 1 09:54:46 2023 UTC 877s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 877s gpgv: issuer "tillea@rki.de" 877s gpgv: Can't check signature: No public key 877s dpkg-source: warning: cannot verify inline signature for ./r-bioc-organismdbi_1.44.0+dfsg-1.dsc: no acceptable signature found 877s autopkgtest [03:46:13]: testing package r-bioc-organismdbi version 1.44.0+dfsg-1 878s autopkgtest [03:46:14]: build not needed 879s autopkgtest [03:46:15]: test pkg-r-autopkgtest: preparing testbed 885s Note, using file '/tmp/autopkgtest.9zBSVd/1-autopkgtest-satdep.dsc' to get the build dependencies 885s Reading package lists... 885s Building dependency tree... 885s Reading state information... 886s Starting pkgProblemResolver with broken count: 0 886s Starting 2 pkgProblemResolver with broken count: 0 886s Done 886s The following NEW packages will be installed: 886s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 886s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 886s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 886s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 886s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 886s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 886s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 886s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 886s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 886s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 886s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 886s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 886s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 886s libjs-highlight.js libjs-jquery libjs-jquery-datatables 886s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 886s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 886s libjs-popper.js libjs-prettify libjs-sifter.js 886s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 886s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 886s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 886s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 886s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 886s libpotrace0 libptexenc1 libquadmath0 libreadline-dev libsharpyuv0 libsm6 886s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 886s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 886s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 886s libxss1 libxt6 libzzip-0-13 linux-libc-dev node-bootstrap-sass 886s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 886s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 886s r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase 886s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 886s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 886s r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata 886s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 886s r-bioc-graph r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-keggrest 886s r-bioc-matrixgenerics r-bioc-organismdbi r-bioc-rbgl r-bioc-rhtslib 886s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 886s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 886s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 886s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 886s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools 886s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl 886s r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-dt 886s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-filelock 886s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 886s r-cran-futile.options r-cran-generics r-cran-glue r-cran-highr r-cran-hms 886s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 886s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 886s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler 886s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 886s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 886s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 886s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 886s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 886s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 886s r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 886s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml 886s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 886s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 886s x11-common xdg-utils zip zlib1g-dev 886s 0 upgraded, 286 newly installed, 0 to remove and 0 not upgraded. 886s Need to get 427 MB of archives. 886s After this operation, 1355 MB of additional disk space will be used. 886s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 886s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 886s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 886s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 886s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 886s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 886s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 886s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 886s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 886s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 887s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 887s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 887s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 887s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 887s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 887s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 887s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 887s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 887s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 887s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 887s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 887s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 887s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 887s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 887s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 887s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 887s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 887s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 887s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 887s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 887s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 887s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 887s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 887s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 887s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 887s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 887s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 887s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 887s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 887s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 887s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 887s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 887s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 887s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 887s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 887s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 887s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 887s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 887s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 887s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 887s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 887s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 887s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 887s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 887s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 887s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 887s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 887s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 887s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 887s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 887s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 887s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 887s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 887s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 887s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 887s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 887s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 887s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 887s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 887s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 887s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 887s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 887s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 887s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 887s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 887s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 887s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 887s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 887s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 887s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 887s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 887s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 887s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 887s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 887s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 887s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 887s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 887s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 887s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 887s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 887s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 887s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 887s Get:93 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 887s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 887s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 887s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 887s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 887s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 887s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 887s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 887s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 887s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 887s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 887s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 887s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 887s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 887s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 887s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 887s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 887s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 888s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 888s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 888s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 888s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 888s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 888s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 888s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 888s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 888s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 888s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 888s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 888s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 888s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 888s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 888s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 888s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 888s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 888s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 888s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 888s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 888s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 888s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 888s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 888s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 888s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 888s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 888s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 888s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 888s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 888s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 888s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 888s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 888s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 888s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 888s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 888s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 888s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 888s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 888s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 888s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 888s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 888s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 888s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 888s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 888s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 888s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 888s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 888s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 888s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 888s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 888s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 888s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 888s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 888s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 888s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 888s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 888s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 888s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 888s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 888s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 888s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 888s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 888s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 888s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 888s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 888s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 888s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 888s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 888s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 888s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 888s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 888s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 888s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 888s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 888s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 888s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 888s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 888s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 888s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 888s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 888s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 888s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 888s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 888s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 888s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 888s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 888s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 888s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 888s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 888s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 888s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 888s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 888s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 888s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 888s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 888s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 888s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 888s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 888s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 888s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 888s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 888s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 888s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 888s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 888s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 888s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 888s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 888s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 888s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 888s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 888s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 888s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 888s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 888s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 888s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 888s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 889s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 889s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 889s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 889s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 889s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 889s Get:232 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 889s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 889s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 889s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 889s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 889s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 889s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 889s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 889s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dt all 0.31+dfsg-1 [265 kB] 889s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 889s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 889s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 889s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 889s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 889s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 889s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 889s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 889s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 889s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 889s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 889s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 889s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 889s Get:254 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 889s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 889s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 889s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 889s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 889s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 889s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 889s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 889s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 889s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 889s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 889s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 889s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 889s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 890s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 890s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 890s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 890s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 890s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 890s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 890s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 890s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 890s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 890s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 890s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 890s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 890s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 890s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 890s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 890s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-graph amd64 1.80.0-1 [1289 kB] 890s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rbgl amd64 1.78.0+dfsg-1 [551 kB] 890s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-organismdbi all 1.44.0+dfsg-1 [456 kB] 890s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 890s Preconfiguring packages ... 891s Fetched 427 MB in 3s (129 MB/s) 891s Selecting previously unselected package libc-dev-bin. 891s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 891s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 891s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 891s Selecting previously unselected package linux-libc-dev:amd64. 891s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 891s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 891s Selecting previously unselected package libcrypt-dev:amd64. 891s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 891s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 891s Selecting previously unselected package libtirpc-dev:amd64. 891s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 891s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 891s Selecting previously unselected package libnsl-dev:amd64. 891s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 891s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 891s Selecting previously unselected package rpcsvc-proto. 891s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 891s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 891s Selecting previously unselected package libc6-dev:amd64. 891s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 891s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 891s Selecting previously unselected package libisl23:amd64. 891s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 891s Unpacking libisl23:amd64 (0.26-3) ... 891s Selecting previously unselected package libmpc3:amd64. 891s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 891s Unpacking libmpc3:amd64 (1.3.1-1) ... 891s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 891s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 891s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 892s Selecting previously unselected package cpp-13. 892s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 892s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 892s Selecting previously unselected package cpp-x86-64-linux-gnu. 892s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 892s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 892s Selecting previously unselected package cpp. 892s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 892s Unpacking cpp (4:13.2.0-7ubuntu1) ... 892s Selecting previously unselected package libcc1-0:amd64. 892s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 892s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 892s Selecting previously unselected package libgomp1:amd64. 892s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 892s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 892s Selecting previously unselected package libitm1:amd64. 892s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 892s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 892s Selecting previously unselected package libatomic1:amd64. 892s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 892s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 892s Selecting previously unselected package libasan8:amd64. 892s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 892s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 892s Selecting previously unselected package liblsan0:amd64. 892s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 892s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 892s Selecting previously unselected package libtsan2:amd64. 892s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 892s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 892s Selecting previously unselected package libubsan1:amd64. 892s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 892s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 892s Selecting previously unselected package libhwasan0:amd64. 892s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 892s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 892s Selecting previously unselected package libquadmath0:amd64. 892s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 892s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 892s Selecting previously unselected package libgcc-13-dev:amd64. 892s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 892s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 892s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 892s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 892s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 893s Selecting previously unselected package gcc-13. 893s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 893s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 893s Selecting previously unselected package gcc-x86-64-linux-gnu. 893s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 893s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 893s Selecting previously unselected package gcc. 893s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 893s Unpacking gcc (4:13.2.0-7ubuntu1) ... 893s Selecting previously unselected package libstdc++-13-dev:amd64. 893s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 893s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 893s Selecting previously unselected package g++-13-x86-64-linux-gnu. 893s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 893s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 893s Selecting previously unselected package g++-13. 893s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 893s Unpacking g++-13 (13.2.0-17ubuntu2) ... 893s Selecting previously unselected package g++-x86-64-linux-gnu. 893s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 893s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 893s Selecting previously unselected package g++. 893s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 893s Unpacking g++ (4:13.2.0-7ubuntu1) ... 893s Selecting previously unselected package build-essential. 893s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 893s Unpacking build-essential (12.10ubuntu1) ... 893s Selecting previously unselected package dctrl-tools. 893s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 893s Unpacking dctrl-tools (2.24-3build2) ... 893s Selecting previously unselected package fonts-dejavu-mono. 893s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 893s Unpacking fonts-dejavu-mono (2.37-8) ... 893s Selecting previously unselected package fonts-dejavu-core. 893s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 893s Unpacking fonts-dejavu-core (2.37-8) ... 893s Selecting previously unselected package fontconfig-config. 893s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 894s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 894s Selecting previously unselected package libfontconfig1:amd64. 894s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 894s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 894s Selecting previously unselected package fontconfig. 894s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 894s Unpacking fontconfig (2.15.0-1ubuntu1) ... 894s Selecting previously unselected package fonts-font-awesome. 894s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 894s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 894s Selecting previously unselected package fonts-glyphicons-halflings. 894s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 894s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 894s Selecting previously unselected package fonts-lmodern. 894s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 894s Unpacking fonts-lmodern (2.005-1) ... 894s Selecting previously unselected package fonts-mathjax. 894s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 894s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 894s Selecting previously unselected package libgfortran5:amd64. 894s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 894s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 894s Selecting previously unselected package libgfortran-13-dev:amd64. 894s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 894s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 894s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 894s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 894s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 895s Selecting previously unselected package gfortran-13. 895s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 895s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 895s Selecting previously unselected package gfortran-x86-64-linux-gnu. 895s Preparing to unpack .../048-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 895s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 895s Selecting previously unselected package gfortran. 895s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 895s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 895s Selecting previously unselected package icu-devtools. 895s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_amd64.deb ... 895s Unpacking icu-devtools (74.2-1ubuntu1) ... 895s Selecting previously unselected package javascript-common. 895s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 895s Unpacking javascript-common (11+nmu1) ... 895s Selecting previously unselected package libio-string-perl. 895s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 895s Unpacking libio-string-perl (1.08-4) ... 895s Selecting previously unselected package liblatex-tounicode-perl. 895s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 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libcairo2:amd64. 898s Preparing to unpack .../064-libcairo2_1.18.0-1_amd64.deb ... 898s Unpacking libcairo2:amd64 (1.18.0-1) ... 898s Selecting previously unselected package libdatrie1:amd64. 898s Preparing to unpack .../065-libdatrie1_0.2.13-3_amd64.deb ... 898s Unpacking libdatrie1:amd64 (0.2.13-3) ... 898s Selecting previously unselected package libdeflate0:amd64. 898s Preparing to unpack .../066-libdeflate0_1.19-1_amd64.deb ... 898s Unpacking libdeflate0:amd64 (1.19-1) ... 898s Selecting previously unselected package libgraphite2-3:amd64. 898s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_amd64.deb ... 898s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 898s Selecting previously unselected package libharfbuzz0b:amd64. 898s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_amd64.deb ... 898s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 898s Selecting previously unselected package x11-common. 898s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 898s Unpacking x11-common (1:7.7+23ubuntu2) ... 898s Selecting previously unselected package libice6:amd64. 898s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_amd64.deb ... 898s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 898s Selecting previously unselected package libicu-dev:amd64. 898s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_amd64.deb ... 898s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 898s Selecting previously unselected package libjpeg-turbo8:amd64. 898s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 898s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 898s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 898s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 898s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 898s Selecting previously unselected package libjpeg8:amd64. 898s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_amd64.deb ... 898s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 898s Selecting previously unselected package libjpeg8-dev:amd64. 898s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 898s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 899s Selecting previously unselected package libjpeg-dev:amd64. 899s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 899s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 899s Selecting previously unselected package libjs-bootstrap. 899s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 899s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 899s Selecting previously unselected package libjs-popper.js. 899s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 899s Unpacking libjs-popper.js (1.16.1+ds-6) ... 899s Selecting previously unselected package libjs-bootstrap4. 899s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 899s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 899s Selecting previously unselected package libjs-d3. 899s 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unpack .../095-liblapack-dev_3.12.0-3_amd64.deb ... 900s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 900s Selecting previously unselected package liblerc4:amd64. 900s Preparing to unpack .../096-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 900s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 900s Selecting previously unselected package liblua5.4-0:amd64. 900s Preparing to unpack .../097-liblua5.4-0_5.4.6-3_amd64.deb ... 900s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 900s Selecting previously unselected package libncurses-dev:amd64. 900s Preparing to unpack .../098-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 900s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 900s Selecting previously unselected package libthai-data. 900s Preparing to unpack .../099-libthai-data_0.1.29-2_all.deb ... 900s Unpacking libthai-data (0.1.29-2) ... 900s Selecting previously unselected package libthai0:amd64. 900s Preparing to unpack .../100-libthai0_0.1.29-2_amd64.deb ... 900s Unpacking 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previously unselected package libpcre2-16-0:amd64. 900s Preparing to unpack .../106-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 900s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 900s Selecting previously unselected package libpcre2-32-0:amd64. 900s Preparing to unpack .../107-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 900s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 900s Selecting previously unselected package libpcre2-posix3:amd64. 900s Preparing to unpack .../108-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 900s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 900s Selecting previously unselected package libpcre2-dev:amd64. 900s Preparing to unpack .../109-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 900s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 900s Selecting previously unselected package libpkgconf3:amd64. 900s Preparing to unpack .../110-libpkgconf3_1.8.1-2_amd64.deb ... 900s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 900s Selecting previously unselected package zlib1g-dev:amd64. 900s Preparing to unpack .../111-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 900s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 900s Selecting previously unselected package libpng-dev:amd64. 900s Preparing to unpack .../112-libpng-dev_1.6.43-1_amd64.deb ... 900s Unpacking libpng-dev:amd64 (1.6.43-1) ... 900s Selecting previously unselected package libpotrace0:amd64. 900s Preparing to unpack .../113-libpotrace0_1.16-2_amd64.deb ... 900s Unpacking libpotrace0:amd64 (1.16-2) ... 901s Selecting previously unselected package libptexenc1:amd64. 901s Preparing to unpack .../114-libptexenc1_2023.20230311.66589-9_amd64.deb ... 901s Unpacking libptexenc1:amd64 (2023.20230311.66589-9) ... 901s Selecting previously unselected package libreadline-dev:amd64. 901s Preparing to unpack .../115-libreadline-dev_8.2-3_amd64.deb ... 901s Unpacking libreadline-dev:amd64 (8.2-3) ... 901s Selecting previously unselected package libsharpyuv0:amd64. 901s Preparing to unpack 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903s Unpacking libtexlua53-5:amd64 (2023.20230311.66589-9) ... 903s Selecting previously unselected package libjbig0:amd64. 903s Preparing to unpack .../122-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 903s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 903s Selecting previously unselected package libwebp7:amd64. 903s Preparing to unpack .../123-libwebp7_1.3.2-0.4_amd64.deb ... 903s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 903s Selecting previously unselected package libtiff6:amd64. 903s Preparing to unpack .../124-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 903s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 903s Selecting previously unselected package libxft2:amd64. 903s Preparing to unpack .../125-libxft2_2.3.6-1_amd64.deb ... 903s Unpacking libxft2:amd64 (2.3.6-1) ... 903s Selecting previously unselected package libxss1:amd64. 903s Preparing to unpack .../126-libxss1_1%3a1.2.3-1build2_amd64.deb ... 903s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 903s Selecting previously 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Preparing to unpack .../138-pandoc_3.1.3+ds-2_amd64.deb ... 903s Unpacking pandoc (3.1.3+ds-2) ... 903s Selecting previously unselected package pkgconf-bin. 903s Preparing to unpack .../139-pkgconf-bin_1.8.1-2_amd64.deb ... 903s Unpacking pkgconf-bin (1.8.1-2) ... 903s Selecting previously unselected package pkgconf:amd64. 903s Preparing to unpack .../140-pkgconf_1.8.1-2_amd64.deb ... 903s Unpacking pkgconf:amd64 (1.8.1-2) ... 903s Selecting previously unselected package pkg-config:amd64. 903s Preparing to unpack .../141-pkg-config_1.8.1-2_amd64.deb ... 903s Unpacking pkg-config:amd64 (1.8.1-2) ... 903s Selecting previously unselected package zip. 903s Preparing to unpack .../142-zip_3.0-13_amd64.deb ... 903s Unpacking zip (3.0-13) ... 903s Selecting previously unselected package unzip. 903s Preparing to unpack .../143-unzip_6.0-28ubuntu3_amd64.deb ... 903s Unpacking unzip (6.0-28ubuntu3) ... 903s Selecting previously unselected package xdg-utils. 903s Preparing to unpack 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(0.48.1-2) ... 903s Selecting previously unselected package r-bioc-biobase. 903s Preparing to unpack .../150-r-bioc-biobase_2.62.0-1_amd64.deb ... 903s Unpacking r-bioc-biobase (2.62.0-1) ... 903s Selecting previously unselected package r-bioc-s4vectors. 903s Preparing to unpack .../151-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 903s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 903s Selecting previously unselected package r-bioc-iranges. 903s Preparing to unpack .../152-r-bioc-iranges_2.36.0-1_amd64.deb ... 903s Unpacking r-bioc-iranges (2.36.0-1) ... 903s Selecting previously unselected package r-cran-dbi. 903s Preparing to unpack .../153-r-cran-dbi_1.2.2-1_all.deb ... 903s Unpacking r-cran-dbi (1.2.2-1) ... 903s Selecting previously unselected package r-cran-bit. 903s Preparing to unpack .../154-r-cran-bit_4.0.5-1_amd64.deb ... 903s Unpacking r-cran-bit (4.0.5-1) ... 903s Selecting previously unselected package r-cran-bit64. 903s Preparing to unpack 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Selecting previously unselected package r-cran-cpp11. 904s Preparing to unpack .../167-r-cran-cpp11_0.4.7-1_all.deb ... 904s Unpacking r-cran-cpp11 (0.4.7-1) ... 904s Selecting previously unselected package r-cran-rsqlite. 904s Preparing to unpack .../168-r-cran-rsqlite_2.3.4-1_amd64.deb ... 904s Unpacking r-cran-rsqlite (2.3.4-1) ... 904s Selecting previously unselected package r-cran-curl. 904s Preparing to unpack .../169-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 904s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 904s Selecting previously unselected package r-cran-jsonlite. 904s Preparing to unpack .../170-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 904s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 904s Selecting previously unselected package r-cran-mime. 904s Preparing to unpack .../171-r-cran-mime_0.12-1_amd64.deb ... 904s Unpacking r-cran-mime (0.12-1) ... 904s Selecting previously unselected package r-cran-sys. 904s Preparing to unpack .../172-r-cran-sys_3.4.2-1_amd64.deb ... 904s Unpacking r-cran-sys (3.4.2-1) ... 904s Selecting previously unselected package r-cran-askpass. 904s Preparing to unpack .../173-r-cran-askpass_1.2.0-1_amd64.deb ... 904s Unpacking r-cran-askpass (1.2.0-1) ... 904s Selecting previously unselected package r-cran-openssl. 904s Preparing to unpack .../174-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 904s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 904s Selecting previously unselected package r-cran-r6. 904s Preparing to unpack .../175-r-cran-r6_2.5.1-1_all.deb ... 904s Unpacking r-cran-r6 (2.5.1-1) ... 904s Selecting previously unselected package r-cran-httr. 904s Preparing to unpack .../176-r-cran-httr_1.4.7+dfsg-1_all.deb ... 904s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 904s Selecting previously unselected package r-cran-png. 904s Preparing to unpack .../177-r-cran-png_0.1-8-1_amd64.deb ... 904s Unpacking r-cran-png (0.1-8-1) ... 904s Selecting previously unselected package r-bioc-zlibbioc. 904s Preparing to unpack .../178-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 904s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 904s Selecting previously unselected package r-bioc-xvector. 904s Preparing to unpack .../179-r-bioc-xvector_0.42.0-1_amd64.deb ... 904s Unpacking r-bioc-xvector (0.42.0-1) ... 904s Selecting previously unselected package r-cran-bitops. 904s Preparing to unpack .../180-r-cran-bitops_1.0-7-1_amd64.deb ... 904s Unpacking r-cran-bitops (1.0-7-1) ... 904s Selecting previously unselected package r-cran-rcurl. 904s Preparing to unpack .../181-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 904s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 905s Selecting previously unselected package r-bioc-genomeinfodbdata. 905s Preparing to unpack .../182-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 905s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 905s Selecting previously unselected package r-bioc-genomeinfodb. 905s Preparing to unpack .../183-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 905s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 905s Selecting previously unselected package r-cran-crayon. 905s Preparing to unpack .../184-r-cran-crayon_1.5.2-1_all.deb ... 905s Unpacking r-cran-crayon (1.5.2-1) ... 905s Selecting previously unselected package r-bioc-biostrings. 905s Preparing to unpack .../185-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 905s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 905s Selecting previously unselected package r-bioc-keggrest. 905s Preparing to unpack .../186-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 905s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 905s Selecting previously unselected package r-bioc-annotationdbi. 905s Preparing to unpack .../187-r-bioc-annotationdbi_1.64.1-1_all.deb ... 905s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 905s Selecting previously unselected package r-cran-generics. 905s Preparing to unpack .../188-r-cran-generics_0.1.3-1_all.deb ... 905s Unpacking r-cran-generics (0.1.3-1) ... 905s Selecting previously unselected package r-cran-magrittr. 905s Preparing to unpack .../189-r-cran-magrittr_2.0.3-1_amd64.deb ... 905s Unpacking r-cran-magrittr (2.0.3-1) ... 905s Selecting previously unselected package r-cran-fansi. 905s Preparing to unpack .../190-r-cran-fansi_1.0.5-1_amd64.deb ... 905s Unpacking r-cran-fansi (1.0.5-1) ... 905s Selecting previously unselected package r-cran-utf8. 905s Preparing to unpack .../191-r-cran-utf8_1.2.4-1_amd64.deb ... 905s Unpacking r-cran-utf8 (1.2.4-1) ... 905s Selecting previously unselected package r-cran-pillar. 905s Preparing to unpack .../192-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 905s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 905s Selecting previously unselected package r-cran-tibble. 905s Preparing to unpack .../193-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 905s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 905s Selecting previously unselected package r-cran-withr. 905s Preparing to unpack .../194-r-cran-withr_2.5.0-1_all.deb ... 905s Unpacking r-cran-withr (2.5.0-1) ... 905s Selecting previously unselected package r-cran-tidyselect. 905s Preparing to unpack .../195-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 905s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 906s Selecting previously unselected package r-cran-dplyr. 906s Preparing to unpack .../196-r-cran-dplyr_1.1.4-1_amd64.deb ... 906s Unpacking r-cran-dplyr (1.1.4-1) ... 906s Selecting previously unselected package r-cran-purrr. 906s Preparing to unpack .../197-r-cran-purrr_1.0.2-1_amd64.deb ... 906s Unpacking r-cran-purrr (1.0.2-1) ... 906s Selecting previously unselected package r-cran-stringi. 906s Preparing to unpack .../198-r-cran-stringi_1.8.3-1_amd64.deb ... 906s Unpacking r-cran-stringi (1.8.3-1) ... 906s Selecting previously unselected package r-cran-stringr. 906s Preparing to unpack .../199-r-cran-stringr_1.5.1-1_all.deb ... 906s Unpacking r-cran-stringr (1.5.1-1) ... 906s Selecting previously unselected package r-cran-tidyr. 906s Preparing to unpack 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r-bioc-biocversion (3.18.1-1) ... 906s Selecting previously unselected package r-cran-rappdirs. 906s Preparing to unpack .../206-r-cran-rappdirs_0.3.3-1_amd64.deb ... 906s Unpacking r-cran-rappdirs (0.3.3-1) ... 906s Selecting previously unselected package r-cran-yaml. 906s Preparing to unpack .../207-r-cran-yaml_2.3.8-1_amd64.deb ... 906s Unpacking r-cran-yaml (2.3.8-1) ... 906s Selecting previously unselected package r-cran-littler. 906s Preparing to unpack .../208-r-cran-littler_0.3.19-1_amd64.deb ... 906s Unpacking r-cran-littler (0.3.19-1) ... 906s Selecting previously unselected package r-cran-pkgkitten. 906s Preparing to unpack .../209-r-cran-pkgkitten_0.2.3-1_all.deb ... 906s Unpacking r-cran-pkgkitten (0.2.3-1) ... 906s Selecting previously unselected package r-cran-rcpp. 906s Preparing to unpack .../210-r-cran-rcpp_1.0.12-1_amd64.deb ... 906s Unpacking r-cran-rcpp (1.0.12-1) ... 906s Selecting previously unselected package r-cran-later. 906s Preparing to unpack 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907s Selecting previously unselected package r-cran-ellipsis. 907s Preparing to unpack .../217-r-cran-ellipsis_0.3.2-2_amd64.deb ... 907s Unpacking r-cran-ellipsis (0.3.2-2) ... 907s Selecting previously unselected package r-cran-htmltools. 907s Preparing to unpack .../218-r-cran-htmltools_0.5.7-1_amd64.deb ... 907s Unpacking r-cran-htmltools (0.5.7-1) ... 907s Selecting previously unselected package r-cran-fontawesome. 907s Preparing to unpack .../219-r-cran-fontawesome_0.5.2-1_all.deb ... 907s Unpacking r-cran-fontawesome (0.5.2-1) ... 907s Selecting previously unselected package r-cran-sourcetools. 907s Preparing to unpack .../220-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 907s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 907s Selecting previously unselected package r-cran-commonmark. 907s Preparing to unpack .../221-r-cran-commonmark_1.9.1-1_amd64.deb ... 907s Unpacking r-cran-commonmark (1.9.1-1) ... 907s Selecting previously unselected package r-cran-jquerylib. 907s Preparing to unpack .../222-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 907s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 907s Selecting previously unselected package r-cran-fs. 907s Preparing to unpack .../223-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 907s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 907s Selecting previously unselected package r-cran-sass. 907s Preparing to unpack .../224-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 907s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 907s Selecting previously unselected package r-cran-bslib. 907s Preparing to unpack .../225-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 907s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 907s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 907s Preparing to unpack .../226-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 907s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 907s Selecting previously unselected package r-cran-shiny. 907s Preparing to unpack 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unselected package r-cran-tinytex. 908s Preparing to unpack .../233-r-cran-tinytex_0.49-1_all.deb ... 908s Unpacking r-cran-tinytex (0.49-1) ... 908s Selecting previously unselected package libjs-modernizr. 908s Preparing to unpack .../234-libjs-modernizr_2.6.2+ds1-5_all.deb ... 908s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 908s Selecting previously unselected package r-cran-rmarkdown. 908s Preparing to unpack .../235-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 908s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 909s Selecting previously unselected package r-cran-htmlwidgets. 909s Preparing to unpack .../236-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 909s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 909s Selecting previously unselected package r-cran-lazyeval. 909s Preparing to unpack .../237-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 909s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 909s Selecting previously unselected package r-cran-crosstalk. 909s Preparing to unpack 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922s Setting up texlive-latex-base (2023.20240207-1) ... 922s Setting up r-cran-cpp11 (0.4.7-1) ... 922s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 922s Setting up r-cran-runit (0.4.33-1) ... 922s Setting up r-cran-futile.logger (1.4.3-4build1) ... 922s Setting up r-cran-later (1.3.2+dfsg-1) ... 922s Setting up r-cran-matrix (1.6-5-1) ... 922s Setting up r-cran-tinytex (0.49-1) ... 922s Setting up r-cran-knitr (1.45+dfsg-1) ... 922s Setting up g++ (4:13.2.0-7ubuntu1) ... 922s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 922s Setting up r-cran-cachem (1.0.8-1) ... 922s Setting up build-essential (12.10ubuntu1) ... 922s Setting up r-bioc-iranges (2.36.0-1) ... 922s Setting up r-cran-rjson (0.2.21-1) ... 922s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 922s Setting up r-cran-restfulr (0.0.15-1) ... 922s Setting up r-cran-vctrs (0.6.5-1) ... 922s Setting up r-bioc-graph (1.80.0-1) ... 922s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 922s Setting up r-cran-ellipsis (0.3.2-2) ... 922s Setting up r-bioc-rbgl (1.78.0+dfsg-1) ... 922s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 922s Setting up r-base-dev (4.3.2-1build1) ... 922s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 922s Setting up r-cran-stringr (1.5.1-1) ... 922s Setting up r-bioc-biocparallel (1.36.0-1) ... 923s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 923s Setting up r-cran-xml2 (1.3.6-1) ... 923s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 923s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 923s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 923s Setting up texlive-bibtex-extra (2023.20240207-1) ... 923s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 923s Setting up r-cran-httr (1.4.7+dfsg-1) ... 923s Setting up r-cran-hms (1.1.3-1) ... 923s Setting up r-cran-memoise (2.0.1-1) ... 923s Setting up r-cran-promises (1.2.1+dfsg-1) ... 923s Setting up r-cran-purrr (1.0.2-1) ... 923s Setting up r-cran-blob (1.2.4-1) ... 923s Setting up r-cran-htmltools (0.5.7-1) ... 923s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 923s Setting up r-bioc-xvector (0.42.0-1) ... 923s Setting up r-cran-sass (0.4.8+dfsg-1) ... 923s Setting up r-cran-dplyr (1.1.4-1) ... 923s Setting up r-cran-rsqlite (2.3.4-1) ... 923s Setting up r-cran-progress (1.2.3-1) ... 923s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 923s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 923s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 923s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 923s Setting up r-cran-fontawesome (0.5.2-1) ... 923s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 923s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 923s Setting up r-cran-tidyr (1.3.1-1) ... 923s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 923s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 923s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 923s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 923s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 923s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 923s Setting up r-bioc-annotationdbi (1.64.1-1) ... 923s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 923s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 923s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 923s Setting up r-bioc-genomicalignments (1.38.2-1) ... 923s Setting up r-cran-bookdown (0.37+dfsg-1) ... 923s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 923s Setting up r-bioc-rtracklayer (1.62.0-1) ... 923s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 923s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 923s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 923s Setting up r-cran-dt (0.31+dfsg-1) ... 923s Setting up r-bioc-organismdbi (1.44.0+dfsg-1) ... 923s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 923s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 923s Processing triggers for libc-bin (2.39-0ubuntu2) ... 923s Processing triggers for man-db (2.12.0-3) ... 924s Processing triggers for install-info (7.1-3) ... 924s Processing triggers for tex-common (6.18) ... 925s Running updmap-sys. This may take some time... done. 925s Running mktexlsr /var/lib/texmf ... done. 925s Building format(s) --all. 956s This may take some time... done. 959s Reading package lists... 960s Building dependency tree... 960s Reading state information... 960s Starting pkgProblemResolver with broken count: 0 960s Starting 2 pkgProblemResolver with broken count: 0 960s Done 961s The following NEW packages will be installed: 961s autopkgtest-satdep 961s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 961s Need to get 0 B/704 B of archives. 961s After this operation, 0 B of additional disk space will be used. 961s Get:1 /tmp/autopkgtest.9zBSVd/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [704 B] 961s Selecting previously unselected package autopkgtest-satdep. 961s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121655 files and directories currently installed.) 961s Preparing to unpack .../2-autopkgtest-satdep.deb ... 961s Unpacking autopkgtest-satdep (0) ... 961s Setting up autopkgtest-satdep (0) ... 963s (Reading database ... 121655 files and directories currently installed.) 963s Removing autopkgtest-satdep (0) ... 963s autopkgtest [03:47:39]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 963s autopkgtest [03:47:39]: test pkg-r-autopkgtest: [----------------------- 963s Test: Try to load the R library OrganismDbi 963s 963s R version 4.3.2 (2023-10-31) -- "Eye Holes" 963s Copyright (C) 2023 The R Foundation for Statistical Computing 963s Platform: x86_64-pc-linux-gnu (64-bit) 963s 963s R is free software and comes with ABSOLUTELY NO WARRANTY. 963s You are welcome to redistribute it under certain conditions. 963s Type 'license()' or 'licence()' for distribution details. 963s 963s R is a collaborative project with many contributors. 963s Type 'contributors()' for more information and 963s 'citation()' on how to cite R or R packages in publications. 963s 963s Type 'demo()' for some demos, 'help()' for on-line help, or 963s 'help.start()' for an HTML browser interface to help. 963s Type 'q()' to quit R. 963s 963s > library('OrganismDbi') 963s Loading required package: BiocGenerics 963s 963s Attaching package: ‘BiocGenerics’ 963s 963s The following objects are masked from ‘package:stats’: 963s 963s IQR, mad, sd, var, xtabs 963s 963s The following objects are masked from ‘package:base’: 963s 963s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 963s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 963s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 963s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 963s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 963s table, tapply, union, unique, unsplit, which.max, which.min 963s 963s Loading required package: AnnotationDbi 963s Loading required package: stats4 963s Loading required package: Biobase 964s Welcome to Bioconductor 964s 964s Vignettes contain introductory material; view with 964s 'browseVignettes()'. To cite Bioconductor, see 964s 'citation("Biobase")', and for packages 'citation("pkgname")'. 964s 964s Loading required package: IRanges 964s Loading required package: S4Vectors 964s 964s Attaching package: ‘S4Vectors’ 964s 964s The following object is masked from ‘package:utils’: 964s 964s findMatches 964s 964s The following objects are masked from ‘package:base’: 964s 964s expand.grid, I, unname 964s 967s Loading required package: GenomicFeatures 967s Loading required package: GenomeInfoDb 967s Loading required package: GenomicRanges 974s > 974s > 974s Other tests are currently unsupported! 974s They will be progressively added. 974s autopkgtest [03:47:50]: test pkg-r-autopkgtest: -----------------------] 974s pkg-r-autopkgtest PASS 974s autopkgtest [03:47:50]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 975s autopkgtest [03:47:51]: @@@@@@@@@@@@@@@@@@@@ summary 975s pkg-r-autopkgtest PASS 985s Creating nova instance adt-noble-i386-r-bioc-organismdbi-20240322-033136-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...