0s autopkgtest [03:29:28]: starting date and time: 2024-03-22 03:29:28+0000
  0s autopkgtest [03:29:28]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [03:29:28]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.fj_b2hue/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-org.hs.eg.db --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-34.secgroup --name adt-noble-i386-r-bioc-org.hs.eg.db-20240322-032928-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
378s autopkgtest [03:35:46]: testbed dpkg architecture: amd64
378s autopkgtest [03:35:46]: testbed apt version: 2.7.12
378s autopkgtest [03:35:46]: test architecture: i386
378s autopkgtest [03:35:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup
379s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
379s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB]
379s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB]
379s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3805 kB]
379s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
379s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB]
379s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB]
379s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B]
379s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B]
379s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB]
379s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B]
379s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4237 kB]
379s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1277 kB]
379s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B]
379s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB]
379s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB]
379s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B]
382s Fetched 11.3 MB in 2s (7459 kB/s)
383s Reading package lists...
384s Reading package lists...
385s Building dependency tree...
385s Reading state information...
385s Calculating upgrade...
385s The following packages will be upgraded:
385s   cloud-init fonts-ubuntu-console python3-markupsafe
385s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
385s Need to get 629 kB of archives.
385s After this operation, 11.3 kB disk space will be freed.
385s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB]
385s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB]
385s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB]
386s Preconfiguring packages ...
386s Fetched 629 kB in 0s (16.0 MB/s)
386s (Reading database ... 
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71865 files and directories currently installed.)
386s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ...
386s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ...
386s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ...
386s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ...
386s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ...
387s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ...
387s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ...
387s Setting up cloud-init (24.1.2-0ubuntu1) ...
388s Setting up python3-markupsafe (2.1.5-1build1) ...
388s Processing triggers for man-db (2.12.0-3) ...
389s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
389s Reading package lists...
390s Building dependency tree...
390s Reading state information...
390s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
391s sh: Attempting to set up Debian/Ubuntu apt sources automatically
391s sh: Distribution appears to be Ubuntu
392s Reading package lists...
392s Building dependency tree...
392s Reading state information...
392s eatmydata is already the newest version (131-1).
392s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
392s Reading package lists...
393s Building dependency tree...
393s Reading state information...
394s dbus is already the newest version (1.14.10-4ubuntu1).
394s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
394s Reading package lists...
394s Building dependency tree...
394s Reading state information...
394s rng-tools-debian is already the newest version (2.4).
394s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
394s Reading package lists...
394s Building dependency tree...
394s Reading state information...
394s The following packages will be REMOVED:
394s   cloud-init* python3-configobj* python3-debconf*
395s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
395s After this operation, 3256 kB disk space will be freed.
395s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71864 files and directories currently installed.)
395s Removing cloud-init (24.1.2-0ubuntu1) ...
395s Removing python3-configobj (5.0.8-3) ...
395s Removing python3-debconf (1.5.86) ...
396s Processing triggers for man-db (2.12.0-3) ...
396s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71475 files and directories currently installed.)
396s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
396s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
397s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
397s invoke-rc.d: policy-rc.d denied execution of try-restart.
397s Reading package lists...
397s Building dependency tree...
397s Reading state information...
397s linux-generic is already the newest version (6.8.0-11.11+1).
397s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
397s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
397s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
397s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
400s Reading package lists...
400s Reading package lists...
400s Building dependency tree...
400s Reading state information...
400s Calculating upgrade...
401s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
401s Reading package lists...
401s Building dependency tree...
401s Reading state information...
401s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
401s autopkgtest [03:36:09]: rebooting testbed after setup commands that affected boot
439s autopkgtest [03:36:47]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024
439s autopkgtest [03:36:47]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-org.hs.eg.db
442s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-org.hs.eg.db 3.18.0-1 (dsc) [2180 B]
442s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-org.hs.eg.db 3.18.0-1 (tar) [97.9 MB]
442s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-org.hs.eg.db 3.18.0-1 (diff) [5196 B]
442s gpgv: Signature made Mon Dec  4 18:45:07 2023 UTC
442s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
442s gpgv:                issuer "tille@debian.org"
442s gpgv: Can't check signature: No public key
442s dpkg-source: warning: cannot verify inline signature for ./r-bioc-org.hs.eg.db_3.18.0-1.dsc: no acceptable signature found
445s autopkgtest [03:36:53]: testing package r-bioc-org.hs.eg.db version 3.18.0-1
446s autopkgtest [03:36:54]: build not needed
450s autopkgtest [03:36:58]: test pkg-r-autopkgtest: preparing testbed
454s Note, using file '/tmp/autopkgtest.sSEdf3/1-autopkgtest-satdep.dsc' to get the build dependencies
454s Reading package lists...
454s Building dependency tree...
454s Reading state information...
455s Starting pkgProblemResolver with broken count: 0
455s Starting 2 pkgProblemResolver with broken count: 0
455s Done
455s The following NEW packages will be installed:
455s   build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu
455s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
455s   g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13
455s   gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13
455s   gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8
455s   libatomic1 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2
455s   libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
455s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
455s   libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
455s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev
455s   liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
455s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
455s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
455s   libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 libreadline-dev
455s   libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0
455s   libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0
455s   libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev pkg-config
455s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate
455s   r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biostrings
455s   r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-keggrest
455s   r-bioc-org.hs.eg.db r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc
455s   r-cran-askpass r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob
455s   r-cran-cachem r-cran-cli r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi
455s   r-cran-fastmap r-cran-glue r-cran-httr r-cran-jsonlite r-cran-lifecycle
455s   r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgconfig r-cran-plogr
455s   r-cran-png r-cran-r6 r-cran-rcurl r-cran-rlang r-cran-rsqlite r-cran-runit
455s   r-cran-sys r-cran-vctrs r-cran-xml r-cran-xtable rpcsvc-proto unzip
455s   x11-common xdg-utils zip zlib1g-dev
456s 0 upgraded, 150 newly installed, 0 to remove and 0 not upgraded.
456s Need to get 261 MB of archives.
456s After this operation, 920 MB of additional disk space will be used.
456s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB]
456s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB]
456s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB]
456s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB]
456s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB]
456s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB]
456s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB]
456s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB]
456s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB]
456s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB]
456s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B]
456s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
456s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
456s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB]
456s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB]
456s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB]
456s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB]
456s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB]
456s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB]
456s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB]
456s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB]
456s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB]
456s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB]
456s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB]
456s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB]
456s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB]
456s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
456s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
456s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB]
456s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB]
456s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB]
456s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
456s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
456s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
456s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB]
456s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
456s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
456s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB]
456s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB]
456s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB]
456s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB]
456s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB]
456s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB]
456s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB]
456s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B]
456s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B]
456s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB]
456s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB]
456s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB]
456s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB]
456s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB]
456s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB]
456s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B]
456s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB]
456s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB]
456s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB]
456s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB]
456s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB]
456s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB]
456s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
456s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB]
456s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB]
456s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB]
456s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB]
456s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
456s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
456s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
456s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB]
456s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB]
456s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB]
456s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB]
456s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB]
456s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB]
456s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB]
456s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB]
456s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB]
456s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB]
456s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B]
456s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB]
456s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB]
456s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B]
456s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB]
456s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB]
456s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB]
456s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB]
456s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB]
456s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB]
456s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB]
456s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB]
456s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB]
456s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB]
456s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB]
456s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB]
456s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B]
456s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB]
456s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB]
456s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB]
456s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB]
456s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B]
456s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB]
456s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB]
456s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
456s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB]
457s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB]
457s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B]
457s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
457s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
457s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB]
457s Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB]
457s Get:110 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB]
457s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB]
457s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB]
457s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB]
457s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB]
457s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB]
457s Get:116 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB]
457s Get:117 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
457s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
457s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB]
457s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB]
457s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB]
457s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB]
457s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
457s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB]
457s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB]
457s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB]
457s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB]
457s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB]
457s Get:129 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB]
457s Get:130 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB]
457s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB]
457s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB]
457s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB]
457s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
457s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB]
457s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
457s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB]
457s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB]
457s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB]
457s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
457s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
457s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB]
457s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB]
457s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB]
457s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB]
457s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB]
457s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB]
457s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB]
457s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB]
458s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-runit all 0.4.33-1 [377 kB]
458s Preconfiguring packages ...
458s Fetched 261 MB in 2s (124 MB/s)
458s Selecting previously unselected package libc-dev-bin.
458s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71420 files and directories currently installed.)
458s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ...
458s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
458s Selecting previously unselected package linux-libc-dev:amd64.
458s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ...
458s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ...
459s Selecting previously unselected package libcrypt-dev:amd64.
459s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ...
459s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ...
459s Selecting previously unselected package libtirpc-dev:amd64.
459s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ...
459s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
459s Selecting previously unselected package libnsl-dev:amd64.
459s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ...
459s Unpacking libnsl-dev:amd64 (1.3.0-3) ...
459s Selecting previously unselected package rpcsvc-proto.
459s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ...
459s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
459s Selecting previously unselected package libc6-dev:amd64.
459s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ...
459s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ...
459s Selecting previously unselected package libisl23:amd64.
459s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ...
459s Unpacking libisl23:amd64 (0.26-3) ...
459s Selecting previously unselected package libmpc3:amd64.
459s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ...
459s Unpacking libmpc3:amd64 (1.3.1-1) ...
459s Selecting previously unselected package cpp-13-x86-64-linux-gnu.
459s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
459s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
459s Selecting previously unselected package cpp-13.
459s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ...
459s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
459s Selecting previously unselected package cpp-x86-64-linux-gnu.
459s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
459s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
459s Selecting previously unselected package cpp.
459s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ...
459s Unpacking cpp (4:13.2.0-7ubuntu1) ...
459s Selecting previously unselected package libcc1-0:amd64.
459s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ...
459s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ...
459s Selecting previously unselected package libgomp1:amd64.
459s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ...
459s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ...
459s Selecting previously unselected package libitm1:amd64.
459s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ...
459s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ...
459s Selecting previously unselected package libatomic1:amd64.
459s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ...
459s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ...
459s Selecting previously unselected package libasan8:amd64.
459s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ...
459s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ...
459s Selecting previously unselected package liblsan0:amd64.
459s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ...
459s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ...
459s Selecting previously unselected package libtsan2:amd64.
459s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ...
459s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ...
460s Selecting previously unselected package libubsan1:amd64.
460s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ...
460s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ...
460s Selecting previously unselected package libhwasan0:amd64.
460s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ...
460s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ...
460s Selecting previously unselected package libquadmath0:amd64.
460s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ...
460s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ...
460s Selecting previously unselected package libgcc-13-dev:amd64.
460s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ...
460s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
460s Selecting previously unselected package gcc-13-x86-64-linux-gnu.
460s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
460s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
460s Selecting previously unselected package gcc-13.
460s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ...
460s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
460s Selecting previously unselected package gcc-x86-64-linux-gnu.
460s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
460s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
460s Selecting previously unselected package gcc.
460s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ...
460s Unpacking gcc (4:13.2.0-7ubuntu1) ...
460s Selecting previously unselected package libstdc++-13-dev:amd64.
460s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ...
460s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
460s Selecting previously unselected package g++-13-x86-64-linux-gnu.
460s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
460s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
461s Selecting previously unselected package g++-13.
461s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ...
461s Unpacking g++-13 (13.2.0-17ubuntu2) ...
461s Selecting previously unselected package g++-x86-64-linux-gnu.
461s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
461s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
461s Selecting previously unselected package g++.
461s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ...
461s Unpacking g++ (4:13.2.0-7ubuntu1) ...
461s Selecting previously unselected package build-essential.
461s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ...
461s Unpacking build-essential (12.10ubuntu1) ...
461s Selecting previously unselected package dctrl-tools.
461s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ...
461s Unpacking dctrl-tools (2.24-3build2) ...
461s Selecting previously unselected package fonts-dejavu-mono.
461s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ...
461s Unpacking fonts-dejavu-mono (2.37-8) ...
461s Selecting previously unselected package fonts-dejavu-core.
461s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ...
461s Unpacking fonts-dejavu-core (2.37-8) ...
461s Selecting previously unselected package fontconfig-config.
461s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ...
461s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
461s Selecting previously unselected package libfontconfig1:amd64.
461s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ...
461s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
461s Selecting previously unselected package fontconfig.
461s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ...
461s Unpacking fontconfig (2.15.0-1ubuntu1) ...
461s Selecting previously unselected package libgfortran5:amd64.
461s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_amd64.deb ...
461s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ...
461s Selecting previously unselected package libgfortran-13-dev:amd64.
461s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ...
461s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ...
461s Selecting previously unselected package gfortran-13-x86-64-linux-gnu.
461s Preparing to unpack .../042-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
461s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
462s Selecting previously unselected package gfortran-13.
462s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_amd64.deb ...
462s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
462s Selecting previously unselected package gfortran-x86-64-linux-gnu.
462s Preparing to unpack .../044-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
462s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
462s Selecting previously unselected package gfortran.
462s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ...
462s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
462s Selecting previously unselected package icu-devtools.
462s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu1_amd64.deb ...
462s Unpacking icu-devtools (74.2-1ubuntu1) ...
462s Selecting previously unselected package libblas3:amd64.
462s Preparing to unpack .../047-libblas3_3.12.0-3_amd64.deb ...
462s Unpacking libblas3:amd64 (3.12.0-3) ...
462s Selecting previously unselected package libblas-dev:amd64.
462s Preparing to unpack .../048-libblas-dev_3.12.0-3_amd64.deb ...
462s Unpacking libblas-dev:amd64 (3.12.0-3) ...
462s Selecting previously unselected package libbz2-dev:amd64.
462s Preparing to unpack .../049-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ...
462s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ...
462s Selecting previously unselected package libpixman-1-0:amd64.
462s Preparing to unpack .../050-libpixman-1-0_0.42.2-1_amd64.deb ...
462s Unpacking libpixman-1-0:amd64 (0.42.2-1) ...
462s Selecting previously unselected package libxcb-render0:amd64.
462s Preparing to unpack .../051-libxcb-render0_1.15-1_amd64.deb ...
462s Unpacking libxcb-render0:amd64 (1.15-1) ...
462s Selecting previously unselected package libxcb-shm0:amd64.
462s Preparing to unpack .../052-libxcb-shm0_1.15-1_amd64.deb ...
462s Unpacking libxcb-shm0:amd64 (1.15-1) ...
462s Selecting previously unselected package libxrender1:amd64.
462s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1_amd64.deb ...
462s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ...
462s Selecting previously unselected package libcairo2:amd64.
462s Preparing to unpack .../054-libcairo2_1.18.0-1_amd64.deb ...
462s Unpacking libcairo2:amd64 (1.18.0-1) ...
462s Selecting previously unselected package libdatrie1:amd64.
462s Preparing to unpack .../055-libdatrie1_0.2.13-3_amd64.deb ...
462s Unpacking libdatrie1:amd64 (0.2.13-3) ...
462s Selecting previously unselected package libdeflate0:amd64.
462s Preparing to unpack .../056-libdeflate0_1.19-1_amd64.deb ...
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462s Selecting previously unselected package libgraphite2-3:amd64.
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462s Selecting previously unselected package libice6:amd64.
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462s Selecting previously unselected package libjpeg-turbo8:amd64.
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462s Selecting previously unselected package liblapack3:amd64.
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463s Selecting previously unselected package liblerc4:amd64.
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463s Selecting previously unselected package libpango-1.0-0:amd64.
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463s Selecting previously unselected package libpangocairo-1.0-0:amd64.
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463s Selecting previously unselected package libpcre2-16-0:amd64.
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463s Selecting previously unselected package libpcre2-posix3:amd64.
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463s Selecting previously unselected package libpkgconf3:amd64.
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463s Selecting previously unselected package zlib1g-dev:amd64.
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463s Selecting previously unselected package libpng-dev:amd64.
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463s Selecting previously unselected package libreadline-dev:amd64.
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463s Selecting previously unselected package libsharpyuv0:amd64.
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463s Selecting previously unselected package libsm6:amd64.
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463s Selecting previously unselected package libtcl8.6:amd64.
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463s Selecting previously unselected package libjbig0:amd64.
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463s Selecting previously unselected package libwebp7:amd64.
464s Preparing to unpack .../090-libwebp7_1.3.2-0.4_amd64.deb ...
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464s Selecting previously unselected package libtiff6:amd64.
464s Preparing to unpack .../091-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ...
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464s Selecting previously unselected package libxft2:amd64.
464s Preparing to unpack .../092-libxft2_2.3.6-1_amd64.deb ...
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464s Selecting previously unselected package libxss1:amd64.
464s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build2_amd64.deb ...
464s Unpacking libxss1:amd64 (1:1.2.3-1build2) ...
464s Selecting previously unselected package libtk8.6:amd64.
464s Preparing to unpack .../094-libtk8.6_8.6.13-2_amd64.deb ...
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464s Selecting previously unselected package libxt6:amd64.
464s Preparing to unpack .../095-libxt6_1%3a1.2.1-1.1_amd64.deb ...
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464s Selecting previously unselected package pkgconf-bin.
464s Preparing to unpack .../096-pkgconf-bin_1.8.1-2_amd64.deb ...
464s Unpacking pkgconf-bin (1.8.1-2) ...
464s Selecting previously unselected package pkgconf:amd64.
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464s Selecting previously unselected package pkg-config:amd64.
464s Preparing to unpack .../098-pkg-config_1.8.1-2_amd64.deb ...
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464s Selecting previously unselected package zip.
464s Preparing to unpack .../099-zip_3.0-13_amd64.deb ...
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464s Preparing to unpack .../100-unzip_6.0-28ubuntu3_amd64.deb ...
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464s Selecting previously unselected package xdg-utils.
464s Preparing to unpack .../101-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
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464s Selecting previously unselected package r-base-core.
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465s Selecting previously unselected package liblzma-dev:amd64.
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465s Selecting previously unselected package r-base-dev.
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465s Selecting previously unselected package pkg-r-autopkgtest.
465s Preparing to unpack .../105-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
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465s Selecting previously unselected package r-bioc-biocgenerics.
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465s Selecting previously unselected package r-bioc-biobase.
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465s Selecting previously unselected package r-bioc-s4vectors.
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465s Selecting previously unselected package r-bioc-iranges.
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465s Selecting previously unselected package r-cran-dbi.
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465s Selecting previously unselected package r-cran-cli.
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465s Selecting previously unselected package r-cran-vctrs.
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465s Selecting previously unselected package r-cran-blob.
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465s Selecting previously unselected package r-cran-cpp11.
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465s Selecting previously unselected package r-cran-rsqlite.
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465s Selecting previously unselected package r-cran-curl.
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465s Selecting previously unselected package r-cran-jsonlite.
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465s Selecting previously unselected package r-cran-mime.
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466s Selecting previously unselected package r-cran-sys.
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466s Selecting previously unselected package r-cran-askpass.
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466s Selecting previously unselected package r-cran-r6.
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466s Selecting previously unselected package r-cran-httr.
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466s Selecting previously unselected package r-cran-png.
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466s Selecting previously unselected package r-bioc-zlibbioc.
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466s Selecting previously unselected package r-bioc-xvector.
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466s Selecting previously unselected package r-cran-bitops.
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466s Selecting previously unselected package r-cran-rcurl.
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466s Selecting previously unselected package r-bioc-genomeinfodbdata.
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466s Selecting previously unselected package r-cran-crayon.
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466s Selecting previously unselected package r-bioc-biostrings.
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466s Selecting previously unselected package r-bioc-annotationdbi.
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466s Selecting previously unselected package r-cran-xml.
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467s Selecting previously unselected package r-cran-xtable.
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467s Selecting previously unselected package r-bioc-annotate.
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467s Selecting previously unselected package r-bioc-org.hs.eg.db.
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468s Selecting previously unselected package r-cran-runit.
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468s Unpacking r-cran-runit (0.4.33-1) ...
468s Setting up libgraphite2-3:amd64 (1.3.14-2) ...
468s Setting up libpixman-1-0:amd64 (0.42.2-1) ...
468s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ...
468s Setting up libpaper1:amd64 (1.1.29) ...
469s 
469s Creating config file /etc/papersize with new version
469s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ...
469s Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
469s Setting up libdatrie1:amd64 (0.2.13-3) ...
469s Setting up libxcb-render0:amd64 (1.15-1) ...
469s Setting up unzip (6.0-28ubuntu3) ...
469s Setting up x11-common (1:7.7+23ubuntu2) ...
469s Setting up libdeflate0:amd64 (1.19-1) ...
469s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ...
469s Setting up libxcb-shm0:amd64 (1.15-1) ...
469s Setting up libpaper-utils (1.1.29) ...
469s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ...
469s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ...
469s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ...
469s Setting up zip (3.0-13) ...
469s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ...
469s Setting up libblas3:amd64 (3.12.0-3) ...
469s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
469s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
469s Setting up libpkgconf3:amd64 (1.8.1-2) ...
469s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
469s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ...
469s Setting up fonts-dejavu-mono (2.37-8) ...
469s Setting up libmpc3:amd64 (1.3.1-1) ...
469s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ...
469s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ...
469s Setting up icu-devtools (74.2-1ubuntu1) ...
469s Setting up fonts-dejavu-core (2.37-8) ...
469s Setting up pkgconf-bin (1.8.1-2) ...
469s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ...
469s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ...
469s Setting up libwebp7:amd64 (1.3.2-0.4) ...
469s Setting up liblzma-dev:amd64 (5.4.5-0.3) ...
469s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ...
469s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ...
469s Setting up libnsl-dev:amd64 (1.3.0-3) ...
469s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ...
469s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ...
469s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ...
469s Setting up libharfbuzz0b:amd64 (8.3.0-2) ...
469s Setting up libthai-data (0.1.29-2) ...
469s Setting up libxss1:amd64 (1:1.2.3-1build2) ...
469s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ...
469s Setting up libisl23:amd64 (0.26-3) ...
469s Setting up libc-dev-bin (2.39-0ubuntu2) ...
469s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
469s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
469s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ...
469s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ...
469s Setting up libblas-dev:amd64 (3.12.0-3) ...
469s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
469s Setting up dctrl-tools (2.24-3build2) ...
469s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ...
469s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
469s Setting up libice6:amd64 (2:1.0.10-1build2) ...
469s Setting up liblapack3:amd64 (3.12.0-3) ...
469s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
469s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
469s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
469s Setting up pkgconf:amd64 (1.8.1-2) ...
469s Setting up libthai0:amd64 (0.1.29-2) ...
469s Setting up liblapack-dev:amd64 (3.12.0-3) ...
469s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
469s Setting up pkg-config:amd64 (1.8.1-2) ...
469s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
469s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ...
469s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ...
469s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
469s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ...
469s Setting up libsm6:amd64 (2:1.2.3-1build2) ...
469s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ...
469s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
469s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ...
469s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
469s Setting up fontconfig (2.15.0-1ubuntu1) ...
471s Regenerating fonts cache... done.
471s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ...
471s Setting up libxft2:amd64 (2.3.6-1) ...
471s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ...
471s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ...
471s Setting up cpp-13 (13.2.0-17ubuntu2) ...
471s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
471s Setting up libtk8.6:amd64 (8.6.13-2) ...
471s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ...
471s Setting up libreadline-dev:amd64 (8.2-3) ...
471s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
471s Setting up libcairo2:amd64 (1.18.0-1) ...
471s Setting up gcc-13 (13.2.0-17ubuntu2) ...
471s Setting up libxt6:amd64 (1:1.2.1-1.1) ...
471s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ...
471s Setting up cpp (4:13.2.0-7ubuntu1) ...
472s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ...
472s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ...
472s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ...
472s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
472s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
472s Setting up libpng-dev:amd64 (1.6.43-1) ...
472s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
472s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
472s Setting up gcc (4:13.2.0-7ubuntu1) ...
472s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
472s Setting up r-base-core (4.3.2-1build1) ...
472s 
472s Creating config file /etc/R/Renviron with new version
472s Setting up r-cran-crayon (1.5.2-1) ...
472s Setting up r-cran-xml (3.99-0.16.1-1) ...
472s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
472s Setting up r-cran-r6 (2.5.1-1) ...
472s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
472s Setting up r-cran-curl (5.2.0+dfsg-1) ...
472s Setting up g++-13 (13.2.0-17ubuntu2) ...
472s Setting up r-bioc-biocgenerics (0.48.1-2) ...
472s Setting up r-cran-rlang (1.1.3-1) ...
472s Setting up r-cran-sys (3.4.2-1) ...
472s Setting up r-cran-plogr (0.2.0-3build1) ...
472s Setting up r-cran-mime (0.12-1) ...
472s Setting up r-cran-dbi (1.2.2-1) ...
472s Setting up r-cran-glue (1.7.0-1) ...
472s Setting up r-cran-bit (4.0.5-1) ...
472s Setting up r-cran-xtable (1:1.8-4-2) ...
472s Setting up r-cran-cli (3.6.2-1) ...
472s Setting up gfortran (4:13.2.0-7ubuntu1) ...
472s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
472s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
472s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
472s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
472s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
472s Setting up r-cran-bitops (1.0-7-1) ...
472s Setting up r-cran-bit64 (4.0.5-1) ...
472s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
472s Setting up r-cran-askpass (1.2.0-1) ...
472s Setting up r-cran-fastmap (1.1.1-1) ...
472s Setting up r-cran-png (0.1-8-1) ...
472s Setting up r-bioc-biobase (2.62.0-1) ...
472s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
472s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
472s Setting up r-cran-cpp11 (0.4.7-1) ...
472s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
472s Setting up r-cran-runit (0.4.33-1) ...
472s Setting up g++ (4:13.2.0-7ubuntu1) ...
472s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
472s Setting up r-cran-cachem (1.0.8-1) ...
472s Setting up build-essential (12.10ubuntu1) ...
472s Setting up r-bioc-iranges (2.36.0-1) ...
472s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ...
472s Setting up r-cran-vctrs (0.6.5-1) ...
472s Setting up r-cran-openssl (2.1.1+dfsg-2) ...
472s Setting up r-base-dev (4.3.2-1build1) ...
472s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
472s Setting up r-cran-httr (1.4.7+dfsg-1) ...
472s Setting up r-cran-memoise (2.0.1-1) ...
472s Setting up r-cran-blob (1.2.4-1) ...
472s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
472s Setting up r-bioc-xvector (0.42.0-1) ...
472s Setting up r-cran-rsqlite (2.3.4-1) ...
472s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ...
472s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ...
472s Setting up r-bioc-annotationdbi (1.64.1-1) ...
472s Setting up r-bioc-annotate (1.80.0+dfsg-1) ...
472s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ...
472s Processing triggers for man-db (2.12.0-3) ...
473s Processing triggers for install-info (7.1-3) ...
474s Processing triggers for libc-bin (2.39-0ubuntu2) ...
475s Reading package lists...
475s Building dependency tree...
475s Reading state information...
475s Starting pkgProblemResolver with broken count: 0
475s Starting 2 pkgProblemResolver with broken count: 0
475s Done
476s The following NEW packages will be installed:
476s   autopkgtest-satdep
476s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
476s Need to get 0 B/696 B of archives.
476s After this operation, 0 B of additional disk space will be used.
476s Get:1 /tmp/autopkgtest.sSEdf3/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B]
476s Selecting previously unselected package autopkgtest-satdep.
476s (Reading database ... 
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476s Preparing to unpack .../2-autopkgtest-satdep.deb ...
476s Unpacking autopkgtest-satdep (0) ...
476s Setting up autopkgtest-satdep (0) ...
478s (Reading database ... 80674 files and directories currently installed.)
478s Removing autopkgtest-satdep (0) ...
478s autopkgtest [03:37:26]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
478s autopkgtest [03:37:26]: test pkg-r-autopkgtest: [-----------------------
479s Test: Try to load the R library org.Hs.eg.db
479s 
479s R version 4.3.2 (2023-10-31) -- "Eye Holes"
479s Copyright (C) 2023 The R Foundation for Statistical Computing
479s Platform: x86_64-pc-linux-gnu (64-bit)
479s 
479s R is free software and comes with ABSOLUTELY NO WARRANTY.
479s You are welcome to redistribute it under certain conditions.
479s Type 'license()' or 'licence()' for distribution details.
479s 
479s R is a collaborative project with many contributors.
479s Type 'contributors()' for more information and
479s 'citation()' on how to cite R or R packages in publications.
479s 
479s Type 'demo()' for some demos, 'help()' for on-line help, or
479s 'help.start()' for an HTML browser interface to help.
479s Type 'q()' to quit R.
479s 
479s > library('org.Hs.eg.db')
479s Loading required package: AnnotationDbi
479s Loading required package: stats4
479s Loading required package: BiocGenerics
479s 
479s Attaching package: ‘BiocGenerics’
479s 
479s The following objects are masked from ‘package:stats’:
479s 
479s     IQR, mad, sd, var, xtabs
479s 
479s The following objects are masked from ‘package:base’:
479s 
479s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
479s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
479s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
479s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
479s     Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort,
479s     table, tapply, union, unique, unsplit, which.max, which.min
479s 
479s Loading required package: Biobase
479s Welcome to Bioconductor
479s 
479s     Vignettes contain introductory material; view with
479s     'browseVignettes()'. To cite Bioconductor, see
479s     'citation("Biobase")', and for packages 'citation("pkgname")'.
479s 
479s Loading required package: IRanges
479s Loading required package: S4Vectors
480s 
480s Attaching package: ‘S4Vectors’
480s 
480s The following object is masked from ‘package:utils’:
480s 
480s     findMatches
480s 
480s The following objects are masked from ‘package:base’:
480s 
480s     expand.grid, I, unname
480s 
482s 
482s > 
482s > 
482s Other tests are currently unsupported!
482s They will be progressively added.
483s autopkgtest [03:37:31]: test pkg-r-autopkgtest: -----------------------]
483s autopkgtest [03:37:31]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
483s pkg-r-autopkgtest    PASS
483s autopkgtest [03:37:31]: @@@@@@@@@@@@@@@@@@@@ summary
483s pkg-r-autopkgtest    PASS
501s Creating nova instance adt-noble-i386-r-bioc-org.hs.eg.db-20240322-032928-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...