0s autopkgtest [03:28:27]: starting date and time: 2024-03-22 03:28:27+0000
  0s autopkgtest [03:28:27]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [03:28:27]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.s9lbt2l5/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-oligoclasses --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-65.secgroup --name adt-noble-i386-r-bioc-oligoclasses-20240322-032827-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
379s autopkgtest [03:34:46]: testbed dpkg architecture: amd64
379s autopkgtest [03:34:46]: testbed apt version: 2.7.12
379s autopkgtest [03:34:46]: test architecture: i386
379s autopkgtest [03:34:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup
379s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
379s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3805 kB]
379s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB]
379s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
379s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB]
379s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB]
379s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB]
379s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B]
379s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B]
379s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB]
379s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B]
379s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4237 kB]
379s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1277 kB]
379s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B]
379s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB]
379s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB]
379s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B]
383s Fetched 11.3 MB in 2s (7390 kB/s)
383s Reading package lists...
385s Reading package lists...
385s Building dependency tree...
385s Reading state information...
386s Calculating upgrade...
386s The following packages will be upgraded:
386s   cloud-init fonts-ubuntu-console python3-markupsafe
386s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
386s Need to get 629 kB of archives.
386s After this operation, 11.3 kB disk space will be freed.
386s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB]
386s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB]
386s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB]
387s Preconfiguring packages ...
387s Fetched 629 kB in 0s (22.8 MB/s)
387s (Reading database ... 
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(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71865 files and directories currently installed.)
387s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ...
387s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ...
387s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ...
387s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ...
387s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ...
387s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ...
388s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ...
388s Setting up cloud-init (24.1.2-0ubuntu1) ...
389s Setting up python3-markupsafe (2.1.5-1build1) ...
389s Processing triggers for man-db (2.12.0-3) ...
390s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
391s Reading package lists...
391s Building dependency tree...
391s Reading state information...
392s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
392s sh: Attempting to set up Debian/Ubuntu apt sources automatically
392s sh: Distribution appears to be Ubuntu
393s Reading package lists...
394s Building dependency tree...
394s Reading state information...
394s eatmydata is already the newest version (131-1).
394s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
394s Reading package lists...
394s Building dependency tree...
394s Reading state information...
395s dbus is already the newest version (1.14.10-4ubuntu1).
395s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
395s Reading package lists...
395s Building dependency tree...
395s Reading state information...
395s rng-tools-debian is already the newest version (2.4).
395s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
396s Reading package lists...
396s Building dependency tree...
396s Reading state information...
396s The following packages will be REMOVED:
396s   cloud-init* python3-configobj* python3-debconf*
396s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
396s After this operation, 3256 kB disk space will be freed.
396s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71864 files and directories currently installed.)
396s Removing cloud-init (24.1.2-0ubuntu1) ...
397s Removing python3-configobj (5.0.8-3) ...
397s Removing python3-debconf (1.5.86) ...
397s Processing triggers for man-db (2.12.0-3) ...
397s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71475 files and directories currently installed.)
397s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
398s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
398s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
398s invoke-rc.d: policy-rc.d denied execution of try-restart.
398s Reading package lists...
399s Building dependency tree...
399s Reading state information...
399s linux-generic is already the newest version (6.8.0-11.11+1).
399s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
399s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
399s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
399s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
401s Reading package lists...
401s Reading package lists...
402s Building dependency tree...
402s Reading state information...
402s Calculating upgrade...
402s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
402s Reading package lists...
403s Building dependency tree...
403s Reading state information...
403s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
403s autopkgtest [03:35:10]: rebooting testbed after setup commands that affected boot
581s autopkgtest [03:38:08]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024
582s autopkgtest [03:38:09]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-oligoclasses
583s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-oligoclasses 1.64.0-1 (dsc) [2355 B]
583s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-oligoclasses 1.64.0-1 (tar) [373 kB]
583s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-oligoclasses 1.64.0-1 (diff) [4136 B]
583s gpgv: Signature made Thu Nov 30 13:43:38 2023 UTC
583s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
583s gpgv:                issuer "tille@debian.org"
583s gpgv: Can't check signature: No public key
583s dpkg-source: warning: cannot verify inline signature for ./r-bioc-oligoclasses_1.64.0-1.dsc: no acceptable signature found
583s autopkgtest [03:38:10]: testing package r-bioc-oligoclasses version 1.64.0-1
583s autopkgtest [03:38:10]: build not needed
585s autopkgtest [03:38:12]: test pkg-r-autopkgtest: preparing testbed
588s Note, using file '/tmp/autopkgtest.iUZUi3/1-autopkgtest-satdep.dsc' to get the build dependencies
588s Reading package lists...
589s Building dependency tree...
589s Reading state information...
589s Starting pkgProblemResolver with broken count: 0
589s Starting 2 pkgProblemResolver with broken count: 0
589s Done
590s The following NEW packages will be installed:
590s   build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu
590s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
590s   g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13
590s   gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13
590s   gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8
590s   libatomic1 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2
590s   libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
590s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
590s   libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
590s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev
590s   liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
590s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
590s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
590s   libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 libreadline-dev
590s   libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0
590s   libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0
590s   libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev pkg-config
590s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-affyio
590s   r-bioc-biobase r-bioc-biocgenerics r-bioc-biostrings r-bioc-delayedarray
590s   r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges
590s   r-bioc-iranges r-bioc-matrixgenerics r-bioc-oligoclasses r-bioc-s4arrays
590s   r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment
590s   r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-biocmanager r-cran-bit
590s   r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli
590s   r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-dbi r-cran-fastmap
590s   r-cran-ff r-cran-foreach r-cran-glue r-cran-iterators r-cran-lattice
590s   r-cran-lifecycle r-cran-matrix r-cran-matrixstats r-cran-memoise
590s   r-cran-pkgconfig r-cran-plogr r-cran-rcurl r-cran-rlang r-cran-rsqlite
590s   r-cran-runit r-cran-vctrs rpcsvc-proto unzip x11-common xdg-utils zip
590s   zlib1g-dev
590s 0 upgraded, 152 newly installed, 0 to remove and 0 not upgraded.
590s Need to get 201 MB of archives.
590s After this operation, 542 MB of additional disk space will be used.
590s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB]
590s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB]
590s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB]
590s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB]
590s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB]
590s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB]
590s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB]
590s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB]
590s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB]
590s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB]
590s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B]
590s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
590s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
590s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB]
590s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB]
590s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB]
590s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB]
590s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB]
590s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB]
590s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB]
590s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB]
590s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB]
590s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB]
590s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB]
590s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB]
590s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB]
590s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
590s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
590s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB]
590s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB]
590s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB]
590s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
590s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
590s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
590s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB]
590s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
590s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
590s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB]
590s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB]
590s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB]
590s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB]
590s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB]
590s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB]
590s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB]
590s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B]
590s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B]
590s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB]
590s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB]
590s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB]
590s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB]
590s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB]
590s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB]
590s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B]
590s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB]
590s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB]
590s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB]
590s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB]
590s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB]
590s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB]
590s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
590s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB]
590s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB]
590s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB]
590s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB]
590s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
590s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
590s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
590s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB]
590s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB]
590s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB]
590s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB]
590s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB]
590s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB]
590s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB]
590s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB]
590s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB]
590s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB]
590s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B]
590s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB]
590s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB]
590s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B]
590s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB]
590s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB]
590s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB]
590s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB]
590s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB]
590s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB]
590s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB]
590s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB]
590s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB]
590s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB]
591s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB]
591s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB]
591s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B]
591s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB]
591s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB]
591s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB]
591s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB]
591s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B]
591s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB]
591s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB]
591s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
591s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB]
591s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB]
591s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B]
591s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
591s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
591s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
591s Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-affyio amd64 1.72.0-1 [90.8 kB]
591s Get:110 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB]
591s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB]
591s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB]
591s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB]
591s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB]
591s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB]
591s Get:116 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
591s Get:117 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
591s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB]
591s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB]
591s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB]
591s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB]
591s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB]
591s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB]
591s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB]
591s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB]
591s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB]
591s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB]
591s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB]
591s Get:129 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB]
591s Get:130 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB]
591s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-iterators all 1.0.14-1 [336 kB]
591s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-foreach all 1.5.2-1 [124 kB]
591s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB]
591s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB]
591s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB]
591s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB]
591s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB]
591s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB]
591s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
591s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
591s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB]
591s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB]
591s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB]
591s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB]
591s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB]
591s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
591s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB]
591s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB]
591s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB]
591s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ff amd64 4.0.12+ds-1 [978 kB]
591s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-oligoclasses all 1.64.0-1 [1257 kB]
591s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-runit all 0.4.33-1 [377 kB]
592s Preconfiguring packages ...
592s Fetched 201 MB in 1s (135 MB/s)
592s Selecting previously unselected package libc-dev-bin.
592s (Reading database ... 
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71420 files and directories currently installed.)
592s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ...
592s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
592s Selecting previously unselected package linux-libc-dev:amd64.
592s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ...
592s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ...
592s Selecting previously unselected package libcrypt-dev:amd64.
592s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ...
592s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ...
592s Selecting previously unselected package libtirpc-dev:amd64.
592s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ...
592s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
592s Selecting previously unselected package libnsl-dev:amd64.
592s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ...
592s Unpacking libnsl-dev:amd64 (1.3.0-3) ...
593s Selecting previously unselected package rpcsvc-proto.
593s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ...
593s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
593s Selecting previously unselected package libc6-dev:amd64.
593s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ...
593s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ...
593s Selecting previously unselected package libisl23:amd64.
593s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ...
593s Unpacking libisl23:amd64 (0.26-3) ...
593s Selecting previously unselected package libmpc3:amd64.
593s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ...
593s Unpacking libmpc3:amd64 (1.3.1-1) ...
593s Selecting previously unselected package cpp-13-x86-64-linux-gnu.
593s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
593s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
593s Selecting previously unselected package cpp-13.
593s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ...
593s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
593s Selecting previously unselected package cpp-x86-64-linux-gnu.
593s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
593s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
593s Selecting previously unselected package cpp.
593s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ...
593s Unpacking cpp (4:13.2.0-7ubuntu1) ...
593s Selecting previously unselected package libcc1-0:amd64.
593s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ...
593s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ...
593s Selecting previously unselected package libgomp1:amd64.
593s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ...
593s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ...
593s Selecting previously unselected package libitm1:amd64.
593s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ...
593s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ...
593s Selecting previously unselected package libatomic1:amd64.
593s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ...
593s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ...
593s Selecting previously unselected package libasan8:amd64.
593s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ...
593s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ...
593s Selecting previously unselected package liblsan0:amd64.
593s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ...
593s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ...
593s Selecting previously unselected package libtsan2:amd64.
593s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ...
593s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ...
594s Selecting previously unselected package libubsan1:amd64.
594s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ...
594s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ...
594s Selecting previously unselected package libhwasan0:amd64.
594s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ...
594s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ...
594s Selecting previously unselected package libquadmath0:amd64.
594s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ...
594s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ...
594s Selecting previously unselected package libgcc-13-dev:amd64.
594s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ...
594s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
594s Selecting previously unselected package gcc-13-x86-64-linux-gnu.
594s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
594s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
594s Selecting previously unselected package gcc-13.
594s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ...
594s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
594s Selecting previously unselected package gcc-x86-64-linux-gnu.
594s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
594s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
594s Selecting previously unselected package gcc.
594s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ...
594s Unpacking gcc (4:13.2.0-7ubuntu1) ...
594s Selecting previously unselected package libstdc++-13-dev:amd64.
594s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ...
594s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
595s Selecting previously unselected package g++-13-x86-64-linux-gnu.
595s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
595s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
595s Selecting previously unselected package g++-13.
595s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ...
595s Unpacking g++-13 (13.2.0-17ubuntu2) ...
595s Selecting previously unselected package g++-x86-64-linux-gnu.
595s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
595s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
595s Selecting previously unselected package g++.
595s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ...
595s Unpacking g++ (4:13.2.0-7ubuntu1) ...
595s Selecting previously unselected package build-essential.
595s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ...
595s Unpacking build-essential (12.10ubuntu1) ...
595s Selecting previously unselected package dctrl-tools.
595s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ...
595s Unpacking dctrl-tools (2.24-3build2) ...
595s Selecting previously unselected package fonts-dejavu-mono.
595s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ...
595s Unpacking fonts-dejavu-mono (2.37-8) ...
595s Selecting previously unselected package fonts-dejavu-core.
595s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ...
595s Unpacking fonts-dejavu-core (2.37-8) ...
595s Selecting previously unselected package fontconfig-config.
595s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ...
596s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
596s Selecting previously unselected package libfontconfig1:amd64.
596s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ...
596s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
596s Selecting previously unselected package fontconfig.
596s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ...
596s Unpacking fontconfig (2.15.0-1ubuntu1) ...
596s Selecting previously unselected package libgfortran5:amd64.
596s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_amd64.deb ...
596s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ...
596s Selecting previously unselected package libgfortran-13-dev:amd64.
596s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ...
596s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ...
596s Selecting previously unselected package gfortran-13-x86-64-linux-gnu.
596s Preparing to unpack .../042-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
596s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
596s Selecting previously unselected package gfortran-13.
596s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_amd64.deb ...
596s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
596s Selecting previously unselected package gfortran-x86-64-linux-gnu.
596s Preparing to unpack .../044-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
596s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
596s Selecting previously unselected package gfortran.
596s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ...
596s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
596s Selecting previously unselected package icu-devtools.
596s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu1_amd64.deb ...
596s Unpacking icu-devtools (74.2-1ubuntu1) ...
596s Selecting previously unselected package libblas3:amd64.
596s Preparing to unpack .../047-libblas3_3.12.0-3_amd64.deb ...
596s Unpacking libblas3:amd64 (3.12.0-3) ...
596s Selecting previously unselected package libblas-dev:amd64.
596s Preparing to unpack .../048-libblas-dev_3.12.0-3_amd64.deb ...
596s Unpacking libblas-dev:amd64 (3.12.0-3) ...
596s Selecting previously unselected package libbz2-dev:amd64.
596s Preparing to unpack .../049-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ...
596s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ...
596s Selecting previously unselected package libpixman-1-0:amd64.
596s Preparing to unpack .../050-libpixman-1-0_0.42.2-1_amd64.deb ...
596s Unpacking libpixman-1-0:amd64 (0.42.2-1) ...
596s Selecting previously unselected package libxcb-render0:amd64.
596s Preparing to unpack .../051-libxcb-render0_1.15-1_amd64.deb ...
596s Unpacking libxcb-render0:amd64 (1.15-1) ...
596s Selecting previously unselected package libxcb-shm0:amd64.
596s Preparing to unpack .../052-libxcb-shm0_1.15-1_amd64.deb ...
596s Unpacking libxcb-shm0:amd64 (1.15-1) ...
596s Selecting previously unselected package libxrender1:amd64.
596s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1_amd64.deb ...
596s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ...
596s Selecting previously unselected package libcairo2:amd64.
596s Preparing to unpack .../054-libcairo2_1.18.0-1_amd64.deb ...
596s Unpacking libcairo2:amd64 (1.18.0-1) ...
596s Selecting previously unselected package libdatrie1:amd64.
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598s Selecting previously unselected package libpangocairo-1.0-0:amd64.
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598s Selecting previously unselected package libwebp7:amd64.
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598s Selecting previously unselected package libtiff6:amd64.
598s Preparing to unpack .../091-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ...
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598s Selecting previously unselected package libxft2:amd64.
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598s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build2_amd64.deb ...
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598s Selecting previously unselected package libtk8.6:amd64.
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598s Selecting previously unselected package libxt6:amd64.
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598s Selecting previously unselected package pkgconf-bin.
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598s Selecting previously unselected package pkgconf:amd64.
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598s Selecting previously unselected package pkg-config:amd64.
598s Preparing to unpack .../098-pkg-config_1.8.1-2_amd64.deb ...
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598s Selecting previously unselected package zip.
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598s Preparing to unpack .../100-unzip_6.0-28ubuntu3_amd64.deb ...
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599s Selecting previously unselected package xdg-utils.
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599s Selecting previously unselected package r-base-core.
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599s Selecting previously unselected package liblzma-dev:amd64.
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599s Selecting previously unselected package pkg-r-autopkgtest.
599s Preparing to unpack .../105-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
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599s Selecting previously unselected package r-bioc-biocgenerics.
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599s Selecting previously unselected package r-bioc-zlibbioc.
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599s Selecting previously unselected package r-bioc-biobase.
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599s Selecting previously unselected package r-bioc-iranges.
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599s Selecting previously unselected package r-cran-bitops.
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599s Selecting previously unselected package r-bioc-genomeinfodbdata.
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600s Selecting previously unselected package r-cran-crayon.
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600s Selecting previously unselected package r-bioc-biostrings.
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600s Selecting previously unselected package r-cran-lattice.
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600s Selecting previously unselected package r-cran-matrix.
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600s Selecting previously unselected package r-bioc-matrixgenerics.
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600s Selecting previously unselected package r-cran-abind.
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600s Selecting previously unselected package r-bioc-s4arrays.
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600s Selecting previously unselected package r-bioc-sparsearray.
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600s Selecting previously unselected package r-bioc-delayedarray.
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600s Selecting previously unselected package r-bioc-genomicranges.
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600s Selecting previously unselected package r-bioc-summarizedexperiment.
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600s Selecting previously unselected package r-cran-codetools.
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600s Selecting previously unselected package r-cran-foreach.
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600s Selecting previously unselected package r-cran-biocmanager.
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600s Selecting previously unselected package r-cran-bit.
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600s Unpacking r-cran-bit (4.0.5-1) ...
600s Selecting previously unselected package r-cran-bit64.
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600s Selecting previously unselected package r-cran-rlang.
600s Preparing to unpack .../135-r-cran-rlang_1.1.3-1_amd64.deb ...
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601s Selecting previously unselected package r-cran-rsqlite.
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601s Selecting previously unselected package r-bioc-oligoclasses.
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601s Setting up libgraphite2-3:amd64 (1.3.14-2) ...
601s Setting up libpixman-1-0:amd64 (0.42.2-1) ...
601s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ...
601s Setting up libpaper1:amd64 (1.1.29) ...
601s 
601s Creating config file /etc/papersize with new version
601s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ...
601s Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
601s Setting up libdatrie1:amd64 (0.2.13-3) ...
601s Setting up libxcb-render0:amd64 (1.15-1) ...
601s Setting up unzip (6.0-28ubuntu3) ...
601s Setting up x11-common (1:7.7+23ubuntu2) ...
602s Setting up libdeflate0:amd64 (1.19-1) ...
602s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ...
602s Setting up libxcb-shm0:amd64 (1.15-1) ...
602s Setting up libpaper-utils (1.1.29) ...
602s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ...
602s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ...
602s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ...
602s Setting up zip (3.0-13) ...
602s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ...
602s Setting up libblas3:amd64 (3.12.0-3) ...
602s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
602s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
602s Setting up libpkgconf3:amd64 (1.8.1-2) ...
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605s Setting up r-bioc-oligoclasses (1.64.0-1) ...
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614s Reading package lists...
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614s Starting 2 pkgProblemResolver with broken count: 0
614s Done
615s The following NEW packages will be installed:
615s   autopkgtest-satdep
615s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
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615s After this operation, 0 B of additional disk space will be used.
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615s Setting up autopkgtest-satdep (0) ...
617s (Reading database ... 80496 files and directories currently installed.)
617s Removing autopkgtest-satdep (0) ...
617s autopkgtest [03:38:44]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
617s autopkgtest [03:38:44]: test pkg-r-autopkgtest: [-----------------------
617s Test: Try to load the R library oligoClasses
617s 
617s R version 4.3.2 (2023-10-31) -- "Eye Holes"
617s Copyright (C) 2023 The R Foundation for Statistical Computing
617s Platform: x86_64-pc-linux-gnu (64-bit)
617s 
617s R is free software and comes with ABSOLUTELY NO WARRANTY.
617s You are welcome to redistribute it under certain conditions.
617s Type 'license()' or 'licence()' for distribution details.
617s 
617s R is a collaborative project with many contributors.
617s Type 'contributors()' for more information and
617s 'citation()' on how to cite R or R packages in publications.
617s 
617s Type 'demo()' for some demos, 'help()' for on-line help, or
617s 'help.start()' for an HTML browser interface to help.
617s Type 'q()' to quit R.
617s 
617s > library('oligoClasses')
624s Welcome to oligoClasses version 1.64.0
624s > 
624s > 
624s Other tests are currently unsupported!
624s They will be progressively added.
624s autopkgtest [03:38:51]: test pkg-r-autopkgtest: -----------------------]
624s autopkgtest [03:38:51]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
624s pkg-r-autopkgtest    PASS
625s autopkgtest [03:38:52]: @@@@@@@@@@@@@@@@@@@@ summary
625s pkg-r-autopkgtest    PASS
635s Creating nova instance adt-noble-i386-r-bioc-oligoclasses-20240322-032827-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...