0s autopkgtest [03:01:41]: starting date and time: 2024-03-22 03:01:41+0000 0s autopkgtest [03:01:41]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [03:01:41]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.o5_2whed/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-megadepth --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-70.secgroup --name adt-noble-i386-r-bioc-megadepth-20240322-030140-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 530s autopkgtest [03:10:31]: testbed dpkg architecture: amd64 530s autopkgtest [03:10:31]: testbed apt version: 2.7.12 530s autopkgtest [03:10:31]: test architecture: i386 530s autopkgtest [03:10:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup 530s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 530s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 530s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 530s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 530s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3805 kB] 530s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB] 530s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB] 530s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 530s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 530s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 530s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 530s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4237 kB] 530s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1277 kB] 530s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 530s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 530s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 530s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 534s Fetched 11.3 MB in 2s (7252 kB/s) 534s Reading package lists... 536s Reading package lists... 536s Building dependency tree... 536s Reading state information... 537s Calculating upgrade... 537s The following packages will be upgraded: 537s cloud-init fonts-ubuntu-console python3-markupsafe 537s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 537s Need to get 629 kB of archives. 537s After this operation, 11.3 kB disk space will be freed. 537s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 537s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 537s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 538s Preconfiguring packages ... 538s Fetched 629 kB in 0s (18.9 MB/s) 538s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 538s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 538s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 538s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 538s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 538s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 538s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 539s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 539s Setting up cloud-init (24.1.2-0ubuntu1) ... 540s Setting up python3-markupsafe (2.1.5-1build1) ... 540s Processing triggers for man-db (2.12.0-3) ... 541s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 541s Reading package lists... 542s Building dependency tree... 542s Reading state information... 542s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 543s sh: Attempting to set up Debian/Ubuntu apt sources automatically 543s sh: Distribution appears to be Ubuntu 544s Reading package lists... 544s Building dependency tree... 544s Reading state information... 544s eatmydata is already the newest version (131-1). 544s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 544s Reading package lists... 545s Building dependency tree... 545s Reading state information... 545s dbus is already the newest version (1.14.10-4ubuntu1). 545s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 545s Reading package lists... 545s Building dependency tree... 545s Reading state information... 546s rng-tools-debian is already the newest version (2.4). 546s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 546s Reading package lists... 546s Building dependency tree... 546s Reading state information... 546s The following packages will be REMOVED: 546s cloud-init* python3-configobj* python3-debconf* 546s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 546s After this operation, 3256 kB disk space will be freed. 546s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 546s Removing cloud-init (24.1.2-0ubuntu1) ... 547s Removing python3-configobj (5.0.8-3) ... 547s Removing python3-debconf (1.5.86) ... 547s Processing triggers for man-db (2.12.0-3) ... 547s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 547s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 548s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 548s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 548s invoke-rc.d: policy-rc.d denied execution of try-restart. 548s Reading package lists... 548s Building dependency tree... 548s Reading state information... 549s linux-generic is already the newest version (6.8.0-11.11+1). 549s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 549s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 549s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 549s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 551s Reading package lists... 551s Reading package lists... 551s Building dependency tree... 551s Reading state information... 552s Calculating upgrade... 552s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 552s Reading package lists... 552s Building dependency tree... 552s Reading state information... 552s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 553s autopkgtest [03:10:54]: rebooting testbed after setup commands that affected boot 742s autopkgtest [03:14:03]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 743s autopkgtest [03:14:04]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-megadepth 743s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-megadepth 1.12.0+ds-2 (dsc) [2212 B] 743s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-megadepth 1.12.0+ds-2 (tar) [47.1 kB] 743s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-megadepth 1.12.0+ds-2 (diff) [5632 B] 744s gpgv: Signature made Tue Dec 19 09:50:10 2023 UTC 744s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 744s gpgv: issuer "tille@debian.org" 744s gpgv: Can't check signature: No public key 744s dpkg-source: warning: cannot verify inline signature for ./r-bioc-megadepth_1.12.0+ds-2.dsc: no acceptable signature found 744s autopkgtest [03:14:05]: testing package r-bioc-megadepth version 1.12.0+ds-2 745s autopkgtest [03:14:06]: build not needed 748s autopkgtest [03:14:09]: test pkg-r-autopkgtest: preparing testbed 755s Note, using file '/tmp/autopkgtest.3LlRfv/1-autopkgtest-satdep.dsc' to get the build dependencies 755s Reading package lists... 755s Building dependency tree... 755s Reading state information... 756s Starting pkgProblemResolver with broken count: 0 756s Starting 2 pkgProblemResolver with broken count: 0 756s Done 756s The following NEW packages will be installed: 756s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 756s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 756s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 756s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 756s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 756s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 756s javascript-common libasan8 libatomic1 libbibtex-parser-perl libbigwig0 756s libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin 756s libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 756s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgit2-1.7 756s libgomp1 libgraphite2-3 libharfbuzz0b libhts3 libhtscodecs2 756s libhttp-parser2.9 libhwasan0 libice6 libicu-dev libio-string-perl libisl23 756s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 756s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 756s libjs-highlight.js libjs-jquery libjs-jquery-datatables 756s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 756s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 756s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 756s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 756s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 756s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 756s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 756s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 756s libreadline-dev libsharpyuv0 libsm6 libssh2-1 libstdc++-13-dev libsynctex2 756s libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 756s libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 756s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 756s libzzip-0-13 linux-libc-dev littler megadepth node-bootstrap-sass 756s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 756s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-biobase 756s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 756s r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 756s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges 756s r-bioc-iranges r-bioc-matrixgenerics r-bioc-megadepth r-bioc-rhtslib 756s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 756s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 756s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 756s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-bookdown 756s r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-clipr 756s r-cran-cmdfun r-cran-codetools r-cran-commonmark r-cran-covr r-cran-cpp11 756s r-cran-crayon r-cran-credentials r-cran-curl r-cran-desc r-cran-diffobj 756s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 756s r-cran-fastmap r-cran-fontawesome r-cran-formatr r-cran-fs 756s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-gert 756s r-cran-gh r-cran-gitcreds r-cran-glue r-cran-highr r-cran-hms 756s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-httr2 r-cran-ini 756s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 756s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler 756s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 756s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 756s r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-prettyunits 756s r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-purrr 756s r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs 756s r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-rematch2 r-cran-restfulr 756s r-cran-rex r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rprojroot 756s r-cran-rstudioapi r-cran-sass r-cran-sessioninfo r-cran-shiny r-cran-snow 756s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat 756s r-cran-tibble r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-usethis 756s r-cran-utf8 r-cran-vctrs r-cran-vroom r-cran-waldo r-cran-whisker 756s r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml r-cran-zip 756s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 756s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 756s zlib1g-dev 756s 0 upgraded, 304 newly installed, 0 to remove and 0 not upgraded. 756s Need to get 424 MB of archives. 756s After this operation, 1345 MB of additional disk space will be used. 756s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 756s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 756s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 756s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 756s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 756s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 756s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 757s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 757s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 757s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 757s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 757s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 757s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 757s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 757s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 757s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 757s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 757s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 757s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 757s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 757s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 757s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 757s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 757s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 757s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 757s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 757s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 757s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 757s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 757s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 757s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 757s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 757s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 757s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 757s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 757s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 757s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 757s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 757s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 757s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 757s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 757s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 757s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 757s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 757s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 757s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 757s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 757s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 757s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 757s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 757s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 757s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 757s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 757s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 757s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 757s Get:56 http://ftpmaster.internal/ubuntu noble/universe amd64 libbigwig0 amd64 0.4.7+dfsg-3 [29.8 kB] 757s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 757s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 757s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 757s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 757s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 757s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 757s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 757s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 757s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 757s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 757s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 757s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 757s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libhttp-parser2.9 amd64 2.9.4-6 [22.0 kB] 757s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libssh2-1 amd64 1.11.0-4 [138 kB] 757s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libgit2-1.7 amd64 1.7.2+ds-1ubuntu1 [528 kB] 757s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 757s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 757s Get:74 http://ftpmaster.internal/ubuntu noble/universe amd64 libhtscodecs2 amd64 1.6.0-1 [98.9 kB] 757s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libhts3 amd64 1.18+ds-1 [428 kB] 757s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 757s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 757s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 757s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 757s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 757s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 757s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 757s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 757s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 757s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 757s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 757s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 757s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 757s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 757s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 757s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 757s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 757s Get:93 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 757s Get:94 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 757s Get:95 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 757s Get:96 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 757s Get:97 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 757s Get:98 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 757s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 757s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 757s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 757s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 757s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 757s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 757s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 757s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 757s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 757s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 757s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 757s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 757s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 757s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 757s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 757s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 757s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 757s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 757s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 758s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 758s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 758s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 758s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 758s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 758s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 758s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 758s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 758s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 758s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 758s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 758s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 758s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 758s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 758s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 758s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 758s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 758s Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 758s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 758s Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 758s Get:138 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 758s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 758s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 758s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 758s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 758s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 758s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 758s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 758s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 megadepth amd64 1.2.0-4 [85.9 kB] 758s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 758s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 758s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 758s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 758s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 758s Get:152 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 758s Get:153 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 758s Get:154 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 758s Get:155 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 758s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 758s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 758s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 758s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 758s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 758s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 758s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 758s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 758s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 758s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 758s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 758s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 758s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 758s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 758s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 758s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 758s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 758s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 758s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 758s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 758s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 758s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 758s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 758s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 758s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 758s Get:181 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 758s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 758s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 758s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 758s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 758s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 758s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 758s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 758s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 758s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 758s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 758s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 758s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 758s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 758s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 758s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 758s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 758s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 758s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 758s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 758s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 758s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 758s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 758s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 758s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 758s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 758s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 758s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 758s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 758s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 758s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 758s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 758s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 758s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 758s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 758s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 758s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 758s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 758s Get:219 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 758s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 758s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 758s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 758s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 761s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 761s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 761s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 761s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 761s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 761s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 761s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 761s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 761s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 761s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 761s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 761s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 761s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 761s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 761s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 761s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 761s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 761s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 761s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 761s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 761s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 761s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 761s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-clipr all 0.8.0-1 [53.5 kB] 761s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 761s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 761s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 761s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 761s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 761s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 761s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 761s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 761s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 761s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] 761s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 761s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 761s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vroom amd64 1.6.5-1 [848 kB] 761s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-readr amd64 2.1.5-1 [766 kB] 761s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 761s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 761s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.oo all 1.26.0-1 [955 kB] 761s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.utils all 2.12.3-1 [1386 kB] 761s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 761s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 761s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 761s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 761s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 761s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 761s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 761s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 761s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 761s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 761s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 761s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 761s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 761s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 761s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 761s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 761s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 761s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-credentials all 2.0.1-1 [207 kB] 761s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rstudioapi all 0.15.0-1 [277 kB] 761s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-zip amd64 2.3.1-1 [123 kB] 761s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gert amd64 2.0.1+dfsg-1 [234 kB] 761s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gitcreds all 0.1.2-1 [93.5 kB] 761s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr2 all 1.0.0-1 [553 kB] 761s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ini all 0.3.1-2build1 [15.8 kB] 761s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gh all 1.4.0-1 [108 kB] 761s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-whisker all 0.4.1-1 [62.7 kB] 761s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-usethis all 2.2.2-1 [882 kB] 761s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cmdfun all 1.0.2-2 [92.5 kB] 761s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 761s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 761s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-megadepth all 1.12.0+ds-2 [85.4 kB] 761s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 761s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 761s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 761s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 761s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 761s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rex all 1.2.1-1 [129 kB] 761s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 761s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 761s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sessioninfo all 1.2.2-1 [268 kB] 761s Preconfiguring packages ... 761s Fetched 424 MB in 3s (127 MB/s) 761s Selecting previously unselected package libc-dev-bin. 761s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 761s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 761s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 761s Selecting previously unselected package linux-libc-dev:amd64. 761s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 761s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 761s Selecting previously unselected package libcrypt-dev:amd64. 761s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 761s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 761s Selecting previously unselected package libtirpc-dev:amd64. 761s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 761s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 761s Selecting previously unselected package libnsl-dev:amd64. 761s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 761s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 761s Selecting previously unselected package rpcsvc-proto. 761s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 761s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 761s Selecting previously unselected package libc6-dev:amd64. 761s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 761s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 761s Selecting previously unselected package libisl23:amd64. 761s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 761s Unpacking libisl23:amd64 (0.26-3) ... 761s Selecting previously unselected package libmpc3:amd64. 761s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 761s Unpacking libmpc3:amd64 (1.3.1-1) ... 761s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 761s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 761s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 762s Selecting previously unselected package cpp-13. 762s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 762s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 762s Selecting previously unselected package cpp-x86-64-linux-gnu. 762s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 762s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 762s Selecting previously unselected package cpp. 762s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 762s Unpacking cpp (4:13.2.0-7ubuntu1) ... 762s Selecting previously unselected package libcc1-0:amd64. 762s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 762s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 762s Selecting previously unselected package libgomp1:amd64. 762s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 762s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 762s Selecting previously unselected package libitm1:amd64. 762s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 762s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 762s Selecting previously unselected package libatomic1:amd64. 762s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 762s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 762s Selecting previously unselected package libasan8:amd64. 762s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 762s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 762s Selecting previously unselected package liblsan0:amd64. 762s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 762s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 762s Selecting previously unselected package libtsan2:amd64. 762s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 762s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 762s Selecting previously unselected package libubsan1:amd64. 762s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 762s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 762s Selecting previously unselected package libhwasan0:amd64. 762s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 762s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 762s Selecting previously unselected package libquadmath0:amd64. 762s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 762s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 762s Selecting previously unselected package libgcc-13-dev:amd64. 762s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 762s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 762s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 762s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 762s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 763s Selecting previously unselected package gcc-13. 763s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 763s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 763s Selecting previously unselected package gcc-x86-64-linux-gnu. 763s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 763s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 763s Selecting previously unselected package gcc. 763s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 763s Unpacking gcc (4:13.2.0-7ubuntu1) ... 763s Selecting previously unselected package libstdc++-13-dev:amd64. 763s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 763s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 763s Selecting previously unselected package g++-13-x86-64-linux-gnu. 763s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 763s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 763s Selecting previously unselected package g++-13. 763s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 763s Unpacking g++-13 (13.2.0-17ubuntu2) ... 763s Selecting previously unselected package g++-x86-64-linux-gnu. 763s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 763s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 763s Selecting previously unselected package g++. 763s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 763s Unpacking g++ (4:13.2.0-7ubuntu1) ... 763s Selecting previously unselected package build-essential. 763s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 763s Unpacking build-essential (12.10ubuntu1) ... 763s Selecting previously unselected package dctrl-tools. 763s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 763s Unpacking dctrl-tools (2.24-3build2) ... 763s Selecting previously unselected package fonts-dejavu-mono. 763s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 763s Unpacking fonts-dejavu-mono (2.37-8) ... 763s Selecting previously unselected package fonts-dejavu-core. 763s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 763s Unpacking fonts-dejavu-core (2.37-8) ... 763s Selecting previously unselected package fontconfig-config. 763s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 764s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 764s Selecting previously unselected package libfontconfig1:amd64. 764s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 764s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 764s Selecting previously unselected package fontconfig. 764s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 764s Unpacking fontconfig (2.15.0-1ubuntu1) ... 764s Selecting previously unselected package fonts-font-awesome. 764s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 764s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 764s Selecting previously unselected package fonts-glyphicons-halflings. 764s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 764s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 764s Selecting previously unselected package fonts-lmodern. 764s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 764s Unpacking fonts-lmodern (2.005-1) ... 764s Selecting previously unselected package fonts-mathjax. 764s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 764s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 764s Selecting previously unselected package libgfortran5:amd64. 764s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 764s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 764s Selecting previously unselected package libgfortran-13-dev:amd64. 764s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 764s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 764s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 764s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 764s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 764s Selecting previously unselected package gfortran-13. 764s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 764s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 764s Selecting previously unselected package gfortran-x86-64-linux-gnu. 764s Preparing to unpack .../048-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 764s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 764s Selecting previously unselected package gfortran. 764s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 764s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 765s Selecting previously unselected package icu-devtools. 765s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_amd64.deb ... 765s Unpacking icu-devtools (74.2-1ubuntu1) ... 765s Selecting previously unselected package javascript-common. 765s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 765s Unpacking javascript-common (11+nmu1) ... 765s Selecting previously unselected package libio-string-perl. 765s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 765s Unpacking libio-string-perl (1.08-4) ... 765s Selecting previously unselected package liblatex-tounicode-perl. 765s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 765s Unpacking liblatex-tounicode-perl (0.54-2) ... 765s Selecting previously unselected package libbibtex-parser-perl. 765s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 765s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 765s Selecting previously unselected package libbigwig0:amd64. 765s Preparing to unpack .../055-libbigwig0_0.4.7+dfsg-3_amd64.deb ... 765s Unpacking libbigwig0:amd64 (0.4.7+dfsg-3) ... 765s Selecting previously unselected package libblas3:amd64. 765s Preparing to unpack .../056-libblas3_3.12.0-3_amd64.deb ... 765s Unpacking libblas3:amd64 (3.12.0-3) ... 765s Selecting previously unselected package libblas-dev:amd64. 765s Preparing to unpack .../057-libblas-dev_3.12.0-3_amd64.deb ... 765s Unpacking libblas-dev:amd64 (3.12.0-3) ... 765s Selecting previously unselected package libboost1.83-dev:amd64. 765s Preparing to unpack .../058-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 765s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 767s Selecting previously unselected package libboost-dev:amd64. 767s Preparing to unpack .../059-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 767s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ... 767s Selecting previously unselected package libbz2-dev:amd64. 767s Preparing to unpack .../060-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 767s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 768s Selecting previously unselected package libpixman-1-0:amd64. 768s Preparing to unpack .../061-libpixman-1-0_0.42.2-1_amd64.deb ... 768s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 768s Selecting previously unselected package libxcb-render0:amd64. 768s Preparing to unpack .../062-libxcb-render0_1.15-1_amd64.deb ... 768s Unpacking libxcb-render0:amd64 (1.15-1) ... 768s Selecting previously unselected package libxcb-shm0:amd64. 768s Preparing to unpack .../063-libxcb-shm0_1.15-1_amd64.deb ... 768s Unpacking libxcb-shm0:amd64 (1.15-1) ... 768s Selecting previously unselected package libxrender1:amd64. 768s Preparing to unpack .../064-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 768s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 768s Selecting previously unselected package libcairo2:amd64. 768s Preparing to unpack .../065-libcairo2_1.18.0-1_amd64.deb ... 768s Unpacking libcairo2:amd64 (1.18.0-1) ... 768s Selecting previously unselected package libdatrie1:amd64. 768s Preparing to unpack .../066-libdatrie1_0.2.13-3_amd64.deb ... 768s Unpacking libdatrie1:amd64 (0.2.13-3) ... 768s Selecting previously unselected package libdeflate0:amd64. 768s Preparing to unpack .../067-libdeflate0_1.19-1_amd64.deb ... 768s Unpacking libdeflate0:amd64 (1.19-1) ... 768s Selecting previously unselected package libhttp-parser2.9:amd64. 768s Preparing to unpack .../068-libhttp-parser2.9_2.9.4-6_amd64.deb ... 768s Unpacking libhttp-parser2.9:amd64 (2.9.4-6) ... 768s Selecting previously unselected package libssh2-1:amd64. 768s Preparing to unpack .../069-libssh2-1_1.11.0-4_amd64.deb ... 768s Unpacking libssh2-1:amd64 (1.11.0-4) ... 768s Selecting previously unselected package libgit2-1.7:amd64. 768s Preparing to unpack .../070-libgit2-1.7_1.7.2+ds-1ubuntu1_amd64.deb ... 768s Unpacking libgit2-1.7:amd64 (1.7.2+ds-1ubuntu1) ... 768s Selecting previously unselected package libgraphite2-3:amd64. 768s Preparing to unpack .../071-libgraphite2-3_1.3.14-2_amd64.deb ... 768s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 768s Selecting previously unselected package libharfbuzz0b:amd64. 768s Preparing to unpack .../072-libharfbuzz0b_8.3.0-2_amd64.deb ... 768s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 768s Selecting previously unselected package libhtscodecs2:amd64. 768s Preparing to unpack .../073-libhtscodecs2_1.6.0-1_amd64.deb ... 768s Unpacking libhtscodecs2:amd64 (1.6.0-1) ... 768s Selecting previously unselected package libhts3:amd64. 768s Preparing to unpack .../074-libhts3_1.18+ds-1_amd64.deb ... 768s Unpacking libhts3:amd64 (1.18+ds-1) ... 768s Selecting previously unselected package x11-common. 768s Preparing to unpack .../075-x11-common_1%3a7.7+23ubuntu2_all.deb ... 768s Unpacking x11-common (1:7.7+23ubuntu2) ... 768s Selecting previously unselected package libice6:amd64. 768s Preparing to unpack .../076-libice6_2%3a1.0.10-1build2_amd64.deb ... 768s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 768s Selecting previously unselected package libicu-dev:amd64. 768s Preparing to unpack .../077-libicu-dev_74.2-1ubuntu1_amd64.deb ... 768s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 768s Selecting previously unselected package libjpeg-turbo8:amd64. 768s Preparing to unpack .../078-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 768s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 768s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 768s Preparing to unpack .../079-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 768s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 768s Selecting previously unselected package libjpeg8:amd64. 768s Preparing to unpack .../080-libjpeg8_8c-2ubuntu11_amd64.deb ... 768s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 768s Selecting previously unselected package libjpeg8-dev:amd64. 768s Preparing to unpack .../081-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 768s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 769s Selecting previously unselected package libjpeg-dev:amd64. 769s Preparing to unpack .../082-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 769s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 769s Selecting previously unselected package libjs-bootstrap. 769s Preparing to unpack .../083-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 769s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 769s Selecting previously unselected package libjs-popper.js. 769s Preparing to unpack .../084-libjs-popper.js_1.16.1+ds-6_all.deb ... 769s Unpacking libjs-popper.js (1.16.1+ds-6) ... 769s Selecting previously unselected package libjs-bootstrap4. 769s Preparing to unpack .../085-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 769s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 769s Selecting previously unselected package libjs-d3. 769s Preparing to unpack .../086-libjs-d3_3.5.17-4_all.deb ... 769s Unpacking libjs-d3 (3.5.17-4) ... 769s Selecting previously unselected package libjs-es5-shim. 769s Preparing to unpack .../087-libjs-es5-shim_4.6.7-2_all.deb ... 769s Unpacking libjs-es5-shim (4.6.7-2) ... 769s Selecting previously unselected package libjs-highlight.js. 769s Preparing to unpack .../088-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 769s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 769s Selecting previously unselected package libjs-jquery. 769s Preparing to unpack .../089-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 769s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 769s Selecting previously unselected package libjs-jquery-datatables. 769s Preparing to unpack .../090-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 769s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 769s Selecting previously unselected package libjs-sifter.js. 769s Preparing to unpack .../091-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 769s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 769s Selecting previously unselected package libjs-microplugin.js. 769s Preparing to unpack .../092-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 769s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 769s Selecting previously unselected package libjs-jquery-selectize.js. 769s Preparing to unpack .../093-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 769s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 769s Selecting previously unselected package libjs-jquery-ui. 769s Preparing to unpack .../094-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 769s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 769s Selecting previously unselected package libjs-json. 769s Preparing to unpack .../095-libjs-json_0~20221030+~1.0.8-1_all.deb ... 769s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 769s Selecting previously unselected package libjs-lunr. 769s Preparing to unpack .../096-libjs-lunr_2.3.9~dfsg-2_all.deb ... 769s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 769s Selecting previously unselected package libjs-prettify. 769s Preparing to unpack .../097-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 769s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 769s Selecting previously unselected package libkpathsea6:amd64. 769s Preparing to unpack .../098-libkpathsea6_2023.20230311.66589-9_amd64.deb ... 769s Unpacking libkpathsea6:amd64 (2023.20230311.66589-9) ... 769s Selecting previously unselected package liblapack3:amd64. 769s Preparing to unpack .../099-liblapack3_3.12.0-3_amd64.deb ... 769s Unpacking liblapack3:amd64 (3.12.0-3) ... 769s Selecting previously unselected package liblapack-dev:amd64. 769s Preparing to unpack .../100-liblapack-dev_3.12.0-3_amd64.deb ... 769s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 770s Selecting previously unselected package liblerc4:amd64. 770s Preparing to unpack .../101-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 770s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 770s Selecting previously unselected package liblua5.4-0:amd64. 770s Preparing to unpack .../102-liblua5.4-0_5.4.6-3_amd64.deb ... 770s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 770s Selecting previously unselected package libncurses-dev:amd64. 770s Preparing to unpack .../103-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 770s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 770s Selecting previously unselected package libthai-data. 770s Preparing to unpack .../104-libthai-data_0.1.29-2_all.deb ... 770s Unpacking libthai-data (0.1.29-2) ... 770s Selecting previously unselected package libthai0:amd64. 770s Preparing to unpack .../105-libthai0_0.1.29-2_amd64.deb ... 770s Unpacking libthai0:amd64 (0.1.29-2) ... 770s Selecting previously unselected package libpango-1.0-0:amd64. 770s Preparing to unpack .../106-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 770s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 770s Selecting previously unselected package libpangoft2-1.0-0:amd64. 770s Preparing to unpack .../107-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 770s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 770s Selecting previously unselected package libpangocairo-1.0-0:amd64. 770s Preparing to unpack .../108-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 770s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 770s Selecting previously unselected package libpaper1:amd64. 770s Preparing to unpack .../109-libpaper1_1.1.29_amd64.deb ... 770s Unpacking libpaper1:amd64 (1.1.29) ... 770s Selecting previously unselected package libpaper-utils. 770s Preparing to unpack .../110-libpaper-utils_1.1.29_amd64.deb ... 770s Unpacking libpaper-utils (1.1.29) ... 770s Selecting previously unselected package libpcre2-16-0:amd64. 770s Preparing to unpack .../111-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 770s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 770s Selecting previously unselected package libpcre2-32-0:amd64. 770s Preparing to unpack .../112-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 770s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 770s Selecting previously unselected package libpcre2-posix3:amd64. 770s Preparing to unpack .../113-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 770s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 770s Selecting previously unselected package libpcre2-dev:amd64. 770s Preparing to unpack .../114-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 770s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 770s Selecting previously unselected package libpkgconf3:amd64. 770s Preparing to unpack .../115-libpkgconf3_1.8.1-2_amd64.deb ... 770s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 770s Selecting previously unselected package zlib1g-dev:amd64. 770s Preparing to unpack .../116-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 770s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 770s Selecting previously unselected package libpng-dev:amd64. 770s Preparing to unpack .../117-libpng-dev_1.6.43-1_amd64.deb ... 770s Unpacking libpng-dev:amd64 (1.6.43-1) ... 770s Selecting previously unselected package libpotrace0:amd64. 770s Preparing to unpack .../118-libpotrace0_1.16-2_amd64.deb ... 770s Unpacking libpotrace0:amd64 (1.16-2) ... 770s Selecting previously unselected package libptexenc1:amd64. 770s Preparing to unpack .../119-libptexenc1_2023.20230311.66589-9_amd64.deb ... 770s Unpacking libptexenc1:amd64 (2023.20230311.66589-9) ... 770s Selecting previously unselected package libreadline-dev:amd64. 770s Preparing to unpack .../120-libreadline-dev_8.2-3_amd64.deb ... 770s Unpacking libreadline-dev:amd64 (8.2-3) ... 770s Selecting previously unselected package libsharpyuv0:amd64. 770s Preparing to unpack .../121-libsharpyuv0_1.3.2-0.4_amd64.deb ... 770s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 770s Selecting previously unselected package libsm6:amd64. 770s Preparing to unpack .../122-libsm6_2%3a1.2.3-1build2_amd64.deb ... 770s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 770s Selecting previously unselected package libsynctex2:amd64. 770s Preparing to unpack .../123-libsynctex2_2023.20230311.66589-9_amd64.deb ... 770s Unpacking libsynctex2:amd64 (2023.20230311.66589-9) ... 770s Selecting previously unselected package libtcl8.6:amd64. 770s Preparing to unpack .../124-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 770s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 770s Selecting previously unselected package libteckit0:amd64. 770s Preparing to unpack .../125-libteckit0_2.5.12+ds1-1_amd64.deb ... 770s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 770s Selecting previously unselected package libtexlua53-5:amd64. 770s Preparing to unpack .../126-libtexlua53-5_2023.20230311.66589-9_amd64.deb ... 770s Unpacking libtexlua53-5:amd64 (2023.20230311.66589-9) ... 770s Selecting previously unselected package libjbig0:amd64. 770s Preparing to unpack .../127-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 770s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 770s Selecting previously unselected package libwebp7:amd64. 770s Preparing to unpack .../128-libwebp7_1.3.2-0.4_amd64.deb ... 770s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 771s Selecting previously unselected package libtiff6:amd64. 771s Preparing to unpack .../129-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 771s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 771s Selecting previously unselected package libxft2:amd64. 771s Preparing to unpack .../130-libxft2_2.3.6-1_amd64.deb ... 771s Unpacking libxft2:amd64 (2.3.6-1) ... 771s Selecting previously unselected package libxss1:amd64. 771s Preparing to unpack .../131-libxss1_1%3a1.2.3-1build2_amd64.deb ... 771s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 771s Selecting previously unselected package libtk8.6:amd64. 771s Preparing to unpack .../132-libtk8.6_8.6.13-2_amd64.deb ... 771s Unpacking libtk8.6:amd64 (8.6.13-2) ... 771s Selecting previously unselected package libxt6:amd64. 771s Preparing to unpack .../133-libxt6_1%3a1.2.1-1.1_amd64.deb ... 771s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 771s Selecting previously unselected package libxmu6:amd64. 771s Preparing to unpack .../134-libxmu6_2%3a1.1.3-3_amd64.deb ... 771s Unpacking libxmu6:amd64 (2:1.1.3-3) ... 771s Selecting previously unselected package libxpm4:amd64. 771s Preparing to unpack .../135-libxpm4_1%3a3.5.17-1_amd64.deb ... 771s Unpacking libxpm4:amd64 (1:3.5.17-1) ... 771s Selecting previously unselected package libxaw7:amd64. 771s Preparing to unpack .../136-libxaw7_2%3a1.0.14-1_amd64.deb ... 771s Unpacking libxaw7:amd64 (2:1.0.14-1) ... 771s Selecting previously unselected package libxi6:amd64. 771s Preparing to unpack .../137-libxi6_2%3a1.8.1-1_amd64.deb ... 771s Unpacking libxi6:amd64 (2:1.8.1-1) ... 771s Selecting previously unselected package libzzip-0-13:amd64. 771s Preparing to unpack .../138-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... 771s Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 771s Selecting previously unselected package zip. 771s Preparing to unpack .../139-zip_3.0-13_amd64.deb ... 771s Unpacking zip (3.0-13) ... 771s Selecting previously unselected package unzip. 771s Preparing to unpack .../140-unzip_6.0-28ubuntu3_amd64.deb ... 771s Unpacking unzip (6.0-28ubuntu3) ... 771s Selecting previously unselected package xdg-utils. 771s Preparing to unpack .../141-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 771s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 771s Selecting previously unselected package r-base-core. 771s Preparing to unpack .../142-r-base-core_4.3.2-1build1_amd64.deb ... 771s Unpacking r-base-core (4.3.2-1build1) ... 771s Selecting previously unselected package r-cran-littler. 771s Preparing to unpack .../143-r-cran-littler_0.3.19-1_amd64.deb ... 771s Unpacking r-cran-littler (0.3.19-1) ... 771s Selecting previously unselected package littler. 771s Preparing to unpack .../144-littler_0.3.19-1_all.deb ... 771s Unpacking littler (0.3.19-1) ... 771s Selecting previously unselected package megadepth. 771s Preparing to unpack .../145-megadepth_1.2.0-4_amd64.deb ... 771s Unpacking megadepth (1.2.0-4) ... 771s Selecting previously unselected package node-bootstrap-sass. 771s Preparing to unpack .../146-node-bootstrap-sass_3.4.3-2_all.deb ... 771s Unpacking node-bootstrap-sass (3.4.3-2) ... 771s Selecting previously unselected package node-html5shiv. 771s Preparing to unpack .../147-node-html5shiv_3.7.3+dfsg-5_all.deb ... 771s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 771s Selecting previously unselected package node-normalize.css. 772s Preparing to unpack .../148-node-normalize.css_8.0.1-5_all.deb ... 772s Unpacking node-normalize.css (8.0.1-5) ... 772s Selecting previously unselected package pandoc-data. 772s Preparing to unpack .../149-pandoc-data_3.1.3-1_all.deb ... 772s Unpacking pandoc-data (3.1.3-1) ... 772s Selecting previously unselected package pandoc. 772s Preparing to unpack .../150-pandoc_3.1.3+ds-2_amd64.deb ... 772s Unpacking pandoc (3.1.3+ds-2) ... 773s Selecting previously unselected package pkgconf-bin. 773s Preparing to unpack .../151-pkgconf-bin_1.8.1-2_amd64.deb ... 773s Unpacking pkgconf-bin (1.8.1-2) ... 773s Selecting previously unselected package pkgconf:amd64. 773s Preparing to unpack .../152-pkgconf_1.8.1-2_amd64.deb ... 773s Unpacking pkgconf:amd64 (1.8.1-2) ... 773s Selecting previously unselected package pkg-config:amd64. 773s Preparing to unpack .../153-pkg-config_1.8.1-2_amd64.deb ... 773s Unpacking pkg-config:amd64 (1.8.1-2) ... 773s Selecting previously unselected package liblzma-dev:amd64. 773s Preparing to unpack .../154-liblzma-dev_5.4.5-0.3_amd64.deb ... 773s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 773s Selecting previously unselected package r-base-dev. 773s Preparing to unpack .../155-r-base-dev_4.3.2-1build1_all.deb ... 773s Unpacking r-base-dev (4.3.2-1build1) ... 773s Selecting previously unselected package pkg-r-autopkgtest. 773s Preparing to unpack .../156-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 773s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 773s Selecting previously unselected package r-bioc-biocgenerics. 773s Preparing to unpack .../157-r-bioc-biocgenerics_0.48.1-2_all.deb ... 773s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 773s Selecting previously unselected package r-bioc-biobase. 773s Preparing to unpack .../158-r-bioc-biobase_2.62.0-1_amd64.deb ... 773s Unpacking r-bioc-biobase (2.62.0-1) ... 773s Selecting previously unselected package r-bioc-s4vectors. 773s Preparing to unpack .../159-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 773s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 773s Selecting previously unselected package r-bioc-biocio. 773s Preparing to unpack .../160-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 773s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 773s Selecting previously unselected package r-cran-formatr. 773s Preparing to unpack .../161-r-cran-formatr_1.14-1_all.deb ... 773s Unpacking r-cran-formatr (1.14-1) ... 773s Selecting previously unselected package r-cran-lambda.r. 773s Preparing to unpack .../162-r-cran-lambda.r_1.2.4-2build1_all.deb ... 773s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 773s Selecting previously unselected package r-cran-futile.options. 773s Preparing to unpack .../163-r-cran-futile.options_1.0.1-3build1_all.deb ... 773s Unpacking r-cran-futile.options (1.0.1-3build1) ... 773s Selecting previously unselected package r-cran-futile.logger. 773s Preparing to unpack .../164-r-cran-futile.logger_1.4.3-4build1_all.deb ... 773s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 773s Selecting previously unselected package r-cran-snow. 773s Preparing to unpack .../165-r-cran-snow_1%3a0.4.4-2_all.deb ... 773s Unpacking r-cran-snow (1:0.4.4-2) ... 773s Selecting previously unselected package r-cran-codetools. 773s Preparing to unpack .../166-r-cran-codetools_0.2-19-1_all.deb ... 773s Unpacking r-cran-codetools (0.2-19-1) ... 773s Selecting previously unselected package r-cran-bh. 773s Preparing to unpack .../167-r-cran-bh_1.84.0-1_all.deb ... 773s Unpacking r-cran-bh (1.84.0-1) ... 773s Selecting previously unselected package r-cran-cpp11. 773s Preparing to unpack .../168-r-cran-cpp11_0.4.7-1_all.deb ... 773s Unpacking r-cran-cpp11 (0.4.7-1) ... 773s Selecting previously unselected package r-bioc-biocparallel. 773s Preparing to unpack .../169-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 773s Unpacking r-bioc-biocparallel (1.36.0-1) ... 774s Selecting previously unselected package r-cran-base64enc. 774s Preparing to unpack .../170-r-cran-base64enc_0.1-3-3_amd64.deb ... 774s Unpacking r-cran-base64enc (0.1-3-3) ... 774s Selecting previously unselected package r-cran-digest. 774s Preparing to unpack .../171-r-cran-digest_0.6.34-1_amd64.deb ... 774s Unpacking r-cran-digest (0.6.34-1) ... 774s Selecting previously unselected package r-cran-rlang. 774s Preparing to unpack .../172-r-cran-rlang_1.1.3-1_amd64.deb ... 774s Unpacking r-cran-rlang (1.1.3-1) ... 774s Selecting previously unselected package r-cran-ellipsis. 774s Preparing to unpack .../173-r-cran-ellipsis_0.3.2-2_amd64.deb ... 774s Unpacking r-cran-ellipsis (0.3.2-2) ... 774s Selecting previously unselected package r-cran-fastmap. 774s Preparing to unpack .../174-r-cran-fastmap_1.1.1-1_amd64.deb ... 774s Unpacking r-cran-fastmap (1.1.1-1) ... 774s Selecting previously unselected package r-cran-htmltools. 774s Preparing to unpack .../175-r-cran-htmltools_0.5.7-1_amd64.deb ... 774s Unpacking r-cran-htmltools (0.5.7-1) ... 774s Selecting previously unselected package r-cran-evaluate. 774s Preparing to unpack .../176-r-cran-evaluate_0.23-1_all.deb ... 774s Unpacking r-cran-evaluate (0.23-1) ... 774s Selecting previously unselected package r-cran-xfun. 774s Preparing to unpack .../177-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 774s Unpacking r-cran-xfun (0.41+dfsg-1) ... 774s Selecting previously unselected package r-cran-highr. 774s Preparing to unpack .../178-r-cran-highr_0.10+dfsg-1_all.deb ... 774s Unpacking r-cran-highr (0.10+dfsg-1) ... 774s Selecting previously unselected package r-cran-yaml. 774s Preparing to unpack .../179-r-cran-yaml_2.3.8-1_amd64.deb ... 774s Unpacking r-cran-yaml (2.3.8-1) ... 774s Selecting previously unselected package libjs-mathjax. 774s Preparing to unpack .../180-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 774s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 775s Selecting previously unselected package r-cran-knitr. 775s Preparing to unpack .../181-r-cran-knitr_1.45+dfsg-1_all.deb ... 775s Unpacking r-cran-knitr (1.45+dfsg-1) ... 775s Selecting previously unselected package r-cran-cachem. 775s Preparing to unpack .../182-r-cran-cachem_1.0.8-1_amd64.deb ... 775s Unpacking r-cran-cachem (1.0.8-1) ... 775s Selecting previously unselected package r-cran-jquerylib. 775s Preparing to unpack .../183-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 775s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 775s Selecting previously unselected package r-cran-jsonlite. 775s Preparing to unpack .../184-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 775s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 775s Selecting previously unselected package r-cran-cli. 775s Preparing to unpack .../185-r-cran-cli_3.6.2-1_amd64.deb ... 775s Unpacking r-cran-cli (3.6.2-1) ... 775s Selecting previously unselected package r-cran-glue. 775s Preparing to unpack .../186-r-cran-glue_1.7.0-1_amd64.deb ... 775s Unpacking r-cran-glue (1.7.0-1) ... 775s Selecting previously unselected package r-cran-lifecycle. 775s Preparing to unpack .../187-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 775s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 775s Selecting previously unselected package r-cran-memoise. 775s Preparing to unpack .../188-r-cran-memoise_2.0.1-1_all.deb ... 775s Unpacking r-cran-memoise (2.0.1-1) ... 775s Selecting previously unselected package r-cran-mime. 775s Preparing to unpack .../189-r-cran-mime_0.12-1_amd64.deb ... 775s Unpacking r-cran-mime (0.12-1) ... 775s Selecting previously unselected package r-cran-fs. 775s Preparing to unpack .../190-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 775s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 775s Selecting previously unselected package r-cran-r6. 775s Preparing to unpack .../191-r-cran-r6_2.5.1-1_all.deb ... 775s Unpacking r-cran-r6 (2.5.1-1) ... 775s Selecting previously unselected package r-cran-rappdirs. 775s Preparing to unpack .../192-r-cran-rappdirs_0.3.3-1_amd64.deb ... 775s Unpacking r-cran-rappdirs (0.3.3-1) ... 775s Selecting previously unselected package r-cran-sass. 775s Preparing to unpack .../193-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 775s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 775s Selecting previously unselected package r-cran-bslib. 775s Preparing to unpack .../194-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 775s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 776s Selecting previously unselected package r-cran-fontawesome. 776s Preparing to unpack .../195-r-cran-fontawesome_0.5.2-1_all.deb ... 776s Unpacking r-cran-fontawesome (0.5.2-1) ... 776s Selecting previously unselected package r-cran-magrittr. 776s Preparing to unpack .../196-r-cran-magrittr_2.0.3-1_amd64.deb ... 776s Unpacking r-cran-magrittr (2.0.3-1) ... 776s Selecting previously unselected package r-cran-stringi. 776s Preparing to unpack .../197-r-cran-stringi_1.8.3-1_amd64.deb ... 776s Unpacking r-cran-stringi (1.8.3-1) ... 776s Selecting previously unselected package r-cran-vctrs. 776s Preparing to unpack .../198-r-cran-vctrs_0.6.5-1_amd64.deb ... 776s Unpacking r-cran-vctrs (0.6.5-1) ... 776s Selecting previously unselected package r-cran-stringr. 776s Preparing to unpack .../199-r-cran-stringr_1.5.1-1_all.deb ... 776s Unpacking r-cran-stringr (1.5.1-1) ... 776s Selecting previously unselected package r-cran-tinytex. 776s Preparing to unpack .../200-r-cran-tinytex_0.49-1_all.deb ... 776s Unpacking r-cran-tinytex (0.49-1) ... 776s Selecting previously unselected package libjs-modernizr. 776s Preparing to unpack .../201-libjs-modernizr_2.6.2+ds1-5_all.deb ... 776s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 776s Selecting previously unselected package r-cran-pkgkitten. 776s Preparing to unpack .../202-r-cran-pkgkitten_0.2.3-1_all.deb ... 776s Unpacking r-cran-pkgkitten (0.2.3-1) ... 776s Selecting previously unselected package r-cran-rcpp. 776s Preparing to unpack .../203-r-cran-rcpp_1.0.12-1_amd64.deb ... 776s Unpacking r-cran-rcpp (1.0.12-1) ... 776s Selecting previously unselected package r-cran-later. 776s Preparing to unpack .../204-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 776s Unpacking r-cran-later (1.3.2+dfsg-1) ... 776s Selecting previously unselected package r-cran-promises. 776s Preparing to unpack .../205-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 776s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 776s Selecting previously unselected package r-cran-httpuv. 776s Preparing to unpack .../206-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 776s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 776s Selecting previously unselected package r-cran-xtable. 776s Preparing to unpack .../207-r-cran-xtable_1%3a1.8-4-2_all.deb ... 776s Unpacking r-cran-xtable (1:1.8-4-2) ... 776s Selecting previously unselected package r-cran-sourcetools. 776s Preparing to unpack .../208-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 776s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 776s Selecting previously unselected package r-cran-crayon. 776s Preparing to unpack .../209-r-cran-crayon_1.5.2-1_all.deb ... 776s Unpacking r-cran-crayon (1.5.2-1) ... 776s Selecting previously unselected package r-cran-withr. 776s Preparing to unpack .../210-r-cran-withr_2.5.0-1_all.deb ... 776s Unpacking r-cran-withr (2.5.0-1) ... 776s Selecting previously unselected package r-cran-commonmark. 776s Preparing to unpack .../211-r-cran-commonmark_1.9.1-1_amd64.deb ... 776s Unpacking r-cran-commonmark (1.9.1-1) ... 776s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 776s Preparing to unpack .../212-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 776s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 776s Selecting previously unselected package r-cran-shiny. 776s Preparing to unpack .../213-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 776s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 777s Selecting previously unselected package r-cran-rmarkdown. 777s Preparing to unpack .../214-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 777s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 777s Selecting previously unselected package r-cran-bookdown. 777s Preparing to unpack .../215-r-cran-bookdown_0.37+dfsg-1_all.deb ... 777s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 777s Selecting previously unselected package r-cran-biocmanager. 777s Preparing to unpack .../216-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 777s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 777s Selecting previously unselected package tex-common. 777s Preparing to unpack .../217-tex-common_6.18_all.deb ... 777s Unpacking tex-common (6.18) ... 777s Selecting previously unselected package t1utils. 777s Preparing to unpack .../218-t1utils_1.41-4build2_amd64.deb ... 777s Unpacking t1utils (1.41-4build2) ... 777s Selecting previously unselected package texlive-binaries. 777s Preparing to unpack .../219-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 777s Unpacking texlive-binaries (2023.20230311.66589-9) ... 777s Selecting previously unselected package texlive-base. 777s Preparing to unpack .../220-texlive-base_2023.20240207-1_all.deb ... 777s Unpacking texlive-base (2023.20240207-1) ... 779s Selecting previously unselected package texlive-latex-base. 779s Preparing to unpack .../221-texlive-latex-base_2023.20240207-1_all.deb ... 779s Unpacking texlive-latex-base (2023.20240207-1) ... 779s Selecting previously unselected package texlive-bibtex-extra. 779s Preparing to unpack .../222-texlive-bibtex-extra_2023.20240207-1_all.deb ... 779s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 783s Selecting previously unselected package r-bioc-biocstyle. 783s Preparing to unpack .../223-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 783s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 783s Selecting previously unselected package r-bioc-iranges. 783s Preparing to unpack .../224-r-bioc-iranges_2.36.0-1_amd64.deb ... 783s Unpacking r-bioc-iranges (2.36.0-1) ... 783s Selecting previously unselected package r-bioc-zlibbioc. 783s Preparing to unpack .../225-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 783s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 783s Selecting previously unselected package r-bioc-xvector. 783s Preparing to unpack .../226-r-bioc-xvector_0.42.0-1_amd64.deb ... 783s Unpacking r-bioc-xvector (0.42.0-1) ... 783s Selecting previously unselected package r-cran-bitops. 783s Preparing to unpack .../227-r-cran-bitops_1.0-7-1_amd64.deb ... 783s Unpacking r-cran-bitops (1.0-7-1) ... 783s Selecting previously unselected package r-cran-rcurl. 783s Preparing to unpack .../228-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 783s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 783s Selecting previously unselected package r-bioc-genomeinfodbdata. 783s Preparing to unpack .../229-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 783s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 783s Selecting previously unselected package r-bioc-genomeinfodb. 783s Preparing to unpack .../230-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 783s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 783s Selecting previously unselected package r-bioc-biostrings. 783s Preparing to unpack .../231-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 783s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 783s Selecting previously unselected package r-cran-lattice. 783s Preparing to unpack .../232-r-cran-lattice_0.22-5-1_amd64.deb ... 783s Unpacking r-cran-lattice (0.22-5-1) ... 783s Selecting previously unselected package r-cran-matrix. 783s Preparing to unpack .../233-r-cran-matrix_1.6-5-1_amd64.deb ... 783s Unpacking r-cran-matrix (1.6-5-1) ... 783s Selecting previously unselected package r-cran-matrixstats. 783s Preparing to unpack .../234-r-cran-matrixstats_1.2.0-1_amd64.deb ... 783s Unpacking r-cran-matrixstats (1.2.0-1) ... 783s Selecting previously unselected package r-bioc-matrixgenerics. 783s Preparing to unpack .../235-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 783s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 783s Selecting previously unselected package r-cran-abind. 783s Preparing to unpack .../236-r-cran-abind_1.4-5-2_all.deb ... 783s Unpacking r-cran-abind (1.4-5-2) ... 783s Selecting previously unselected package r-bioc-s4arrays. 783s Preparing to unpack .../237-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 783s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 783s Selecting previously unselected package r-bioc-sparsearray. 783s Preparing to unpack .../238-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 783s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 783s Selecting previously unselected package r-bioc-delayedarray. 784s Preparing to unpack .../239-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 784s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 784s Selecting previously unselected package r-bioc-genomicranges. 784s Preparing to unpack .../240-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 784s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 784s Selecting previously unselected package r-bioc-summarizedexperiment. 784s Preparing to unpack .../241-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 784s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 784s Selecting previously unselected package r-bioc-rhtslib. 784s Preparing to unpack .../242-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 784s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 784s Selecting previously unselected package r-bioc-rsamtools. 784s Preparing to unpack .../243-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 784s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 784s Selecting previously unselected package r-bioc-genomicalignments. 784s Preparing to unpack .../244-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 784s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 784s Selecting previously unselected package r-cran-clipr. 784s Preparing to unpack .../245-r-cran-clipr_0.8.0-1_all.deb ... 784s Unpacking r-cran-clipr (0.8.0-1) ... 784s Selecting previously unselected package r-cran-pkgconfig. 784s Preparing to unpack .../246-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 784s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 784s Selecting previously unselected package r-cran-hms. 784s Preparing to unpack .../247-r-cran-hms_1.1.3-1_all.deb ... 784s Unpacking r-cran-hms (1.1.3-1) ... 784s Selecting previously unselected package r-cran-fansi. 784s Preparing to unpack .../248-r-cran-fansi_1.0.5-1_amd64.deb ... 784s Unpacking r-cran-fansi (1.0.5-1) ... 784s Selecting previously unselected package r-cran-utf8. 784s Preparing to unpack .../249-r-cran-utf8_1.2.4-1_amd64.deb ... 784s Unpacking r-cran-utf8 (1.2.4-1) ... 784s Selecting previously unselected package r-cran-pillar. 784s Preparing to unpack .../250-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 784s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 784s Selecting previously unselected package r-cran-tibble. 784s Preparing to unpack .../251-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 784s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 784s Selecting previously unselected package r-cran-bit. 784s Preparing to unpack .../252-r-cran-bit_4.0.5-1_amd64.deb ... 784s Unpacking r-cran-bit (4.0.5-1) ... 784s Selecting previously unselected package r-cran-bit64. 784s Preparing to unpack .../253-r-cran-bit64_4.0.5-1_amd64.deb ... 784s Unpacking r-cran-bit64 (4.0.5-1) ... 784s Selecting previously unselected package r-cran-tidyselect. 784s Preparing to unpack .../254-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 784s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 784s Selecting previously unselected package r-cran-tzdb. 784s Preparing to unpack .../255-r-cran-tzdb_0.4.0-2_amd64.deb ... 784s Unpacking r-cran-tzdb (0.4.0-2) ... 785s Selecting previously unselected package r-cran-prettyunits. 785s Preparing to unpack .../256-r-cran-prettyunits_1.2.0-1_all.deb ... 785s Unpacking r-cran-prettyunits (1.2.0-1) ... 785s Selecting previously unselected package r-cran-progress. 785s Preparing to unpack .../257-r-cran-progress_1.2.3-1_all.deb ... 785s Unpacking r-cran-progress (1.2.3-1) ... 785s Selecting previously unselected package r-cran-vroom. 785s Preparing to unpack .../258-r-cran-vroom_1.6.5-1_amd64.deb ... 785s Unpacking r-cran-vroom (1.6.5-1) ... 785s Selecting previously unselected package r-cran-readr. 785s Preparing to unpack .../259-r-cran-readr_2.1.5-1_amd64.deb ... 785s Unpacking r-cran-readr (2.1.5-1) ... 785s Selecting previously unselected package r-cran-purrr. 785s Preparing to unpack .../260-r-cran-purrr_1.0.2-1_amd64.deb ... 785s Unpacking r-cran-purrr (1.0.2-1) ... 785s Selecting previously unselected package r-cran-r.methodss3. 785s Preparing to unpack .../261-r-cran-r.methodss3_1.8.2-1_all.deb ... 785s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 785s Selecting previously unselected package r-cran-r.oo. 785s Preparing to unpack .../262-r-cran-r.oo_1.26.0-1_all.deb ... 785s Unpacking r-cran-r.oo (1.26.0-1) ... 785s Selecting previously unselected package r-cran-r.utils. 785s Preparing to unpack .../263-r-cran-r.utils_2.12.3-1_all.deb ... 785s Unpacking r-cran-r.utils (2.12.3-1) ... 785s Selecting previously unselected package r-cran-brio. 785s Preparing to unpack .../264-r-cran-brio_1.1.4-1_amd64.deb ... 785s Unpacking r-cran-brio (1.1.4-1) ... 785s Selecting previously unselected package r-cran-ps. 785s Preparing to unpack .../265-r-cran-ps_1.7.6-1_amd64.deb ... 785s Unpacking r-cran-ps (1.7.6-1) ... 785s Selecting previously unselected package r-cran-processx. 785s Preparing to unpack .../266-r-cran-processx_3.8.3-1_amd64.deb ... 785s Unpacking r-cran-processx (3.8.3-1) ... 785s Selecting previously unselected package r-cran-callr. 785s Preparing to unpack .../267-r-cran-callr_3.7.3-2_all.deb ... 785s Unpacking r-cran-callr (3.7.3-2) ... 785s Selecting previously unselected package r-cran-desc. 785s Preparing to unpack .../268-r-cran-desc_1.4.3-1_all.deb ... 785s Unpacking r-cran-desc (1.4.3-1) ... 785s Selecting previously unselected package r-cran-pkgbuild. 785s Preparing to unpack .../269-r-cran-pkgbuild_1.4.3-1_all.deb ... 785s Unpacking r-cran-pkgbuild (1.4.3-1) ... 785s Selecting previously unselected package r-cran-rprojroot. 785s Preparing to unpack .../270-r-cran-rprojroot_2.0.4-1_all.deb ... 785s Unpacking r-cran-rprojroot (2.0.4-1) ... 785s Selecting previously unselected package r-cran-pkgload. 785s Preparing to unpack .../271-r-cran-pkgload_1.3.4-1_all.deb ... 785s Unpacking r-cran-pkgload (1.3.4-1) ... 785s Selecting previously unselected package r-cran-praise. 785s Preparing to unpack .../272-r-cran-praise_1.0.0-4build1_all.deb ... 785s Unpacking r-cran-praise (1.0.0-4build1) ... 785s Selecting previously unselected package r-cran-diffobj. 785s Preparing to unpack .../273-r-cran-diffobj_0.3.5-1_amd64.deb ... 785s Unpacking r-cran-diffobj (0.3.5-1) ... 785s Selecting previously unselected package r-cran-rematch2. 785s Preparing to unpack .../274-r-cran-rematch2_2.1.2-2build1_all.deb ... 785s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 785s Selecting previously unselected package r-cran-waldo. 785s Preparing to unpack .../275-r-cran-waldo_0.5.2-1build1_all.deb ... 785s Unpacking r-cran-waldo (0.5.2-1build1) ... 785s Selecting previously unselected package r-cran-testthat. 785s Preparing to unpack .../276-r-cran-testthat_3.2.1-1_amd64.deb ... 785s Unpacking r-cran-testthat (3.2.1-1) ... 786s Selecting previously unselected package r-cran-curl. 786s Preparing to unpack .../277-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 786s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 786s Selecting previously unselected package r-cran-sys. 786s Preparing to unpack .../278-r-cran-sys_3.4.2-1_amd64.deb ... 786s Unpacking r-cran-sys (3.4.2-1) ... 786s Selecting previously unselected package r-cran-askpass. 786s Preparing to unpack .../279-r-cran-askpass_1.2.0-1_amd64.deb ... 786s Unpacking r-cran-askpass (1.2.0-1) ... 786s Selecting previously unselected package r-cran-openssl. 786s Preparing to unpack .../280-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 786s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 786s Selecting previously unselected package r-cran-credentials. 786s Preparing to unpack .../281-r-cran-credentials_2.0.1-1_all.deb ... 786s Unpacking r-cran-credentials (2.0.1-1) ... 786s Selecting previously unselected package r-cran-rstudioapi. 786s Preparing to unpack .../282-r-cran-rstudioapi_0.15.0-1_all.deb ... 786s Unpacking r-cran-rstudioapi (0.15.0-1) ... 786s Selecting previously unselected package r-cran-zip. 786s Preparing to unpack .../283-r-cran-zip_2.3.1-1_amd64.deb ... 786s Unpacking r-cran-zip (2.3.1-1) ... 786s Selecting previously unselected package r-cran-gert. 786s Preparing to unpack .../284-r-cran-gert_2.0.1+dfsg-1_amd64.deb ... 786s Unpacking r-cran-gert (2.0.1+dfsg-1) ... 786s Selecting previously unselected package r-cran-gitcreds. 786s Preparing to unpack .../285-r-cran-gitcreds_0.1.2-1_all.deb ... 786s Unpacking r-cran-gitcreds (0.1.2-1) ... 786s Selecting previously unselected package r-cran-httr2. 786s Preparing to unpack .../286-r-cran-httr2_1.0.0-1_all.deb ... 786s Unpacking r-cran-httr2 (1.0.0-1) ... 788s Selecting previously unselected package r-cran-ini. 788s Preparing to unpack .../287-r-cran-ini_0.3.1-2build1_all.deb ... 788s Unpacking r-cran-ini (0.3.1-2build1) ... 788s Selecting previously unselected package r-cran-gh. 788s Preparing to unpack .../288-r-cran-gh_1.4.0-1_all.deb ... 788s Unpacking r-cran-gh (1.4.0-1) ... 788s Selecting previously unselected package r-cran-whisker. 788s Preparing to unpack .../289-r-cran-whisker_0.4.1-1_all.deb ... 788s Unpacking r-cran-whisker (0.4.1-1) ... 788s Selecting previously unselected package r-cran-usethis. 788s Preparing to unpack .../290-r-cran-usethis_2.2.2-1_all.deb ... 788s Unpacking r-cran-usethis (2.2.2-1) ... 788s Selecting previously unselected package r-cran-cmdfun. 788s Preparing to unpack .../291-r-cran-cmdfun_1.0.2-2_all.deb ... 788s Unpacking r-cran-cmdfun (1.0.2-2) ... 788s Selecting previously unselected package r-cran-generics. 788s Preparing to unpack .../292-r-cran-generics_0.1.3-1_all.deb ... 788s Unpacking r-cran-generics (0.1.3-1) ... 788s Selecting previously unselected package r-cran-dplyr. 788s Preparing to unpack .../293-r-cran-dplyr_1.1.4-1_amd64.deb ... 788s Unpacking r-cran-dplyr (1.1.4-1) ... 788s Selecting previously unselected package r-bioc-megadepth. 788s Preparing to unpack .../294-r-bioc-megadepth_1.12.0+ds-2_all.deb ... 788s Unpacking r-bioc-megadepth (1.12.0+ds-2) ... 788s Selecting previously unselected package r-cran-xml. 788s Preparing to unpack .../295-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 788s Unpacking r-cran-xml (3.99-0.16.1-1) ... 788s Selecting previously unselected package r-cran-rjson. 788s Preparing to unpack .../296-r-cran-rjson_0.2.21-1_amd64.deb ... 788s Unpacking r-cran-rjson (0.2.21-1) ... 788s Selecting previously unselected package r-cran-restfulr. 788s Preparing to unpack .../297-r-cran-restfulr_0.0.15-1_amd64.deb ... 788s Unpacking r-cran-restfulr (0.0.15-1) ... 788s Selecting previously unselected package r-bioc-rtracklayer. 788s Preparing to unpack .../298-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 788s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 788s Selecting previously unselected package r-cran-lazyeval. 788s Preparing to unpack .../299-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 788s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 788s Selecting previously unselected package r-cran-rex. 788s Preparing to unpack .../300-r-cran-rex_1.2.1-1_all.deb ... 788s Unpacking r-cran-rex (1.2.1-1) ... 788s Selecting previously unselected package r-cran-httr. 788s Preparing to unpack .../301-r-cran-httr_1.4.7+dfsg-1_all.deb ... 788s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 788s Selecting previously unselected package r-cran-covr. 788s Preparing to unpack .../302-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 788s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 788s Selecting previously unselected package r-cran-sessioninfo. 788s Preparing to unpack .../303-r-cran-sessioninfo_1.2.2-1_all.deb ... 788s Unpacking r-cran-sessioninfo (1.2.2-1) ... 788s Setting up libhtscodecs2:amd64 (1.6.0-1) ... 788s Setting up libjs-json (0~20221030+~1.0.8-1) ... 788s Setting up javascript-common (11+nmu1) ... 788s Setting up libgraphite2-3:amd64 (1.3.14-2) ... 788s Setting up libpixman-1-0:amd64 (0.42.2-1) ... 788s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ... 788s Setting up libpaper1:amd64 (1.1.29) ... 788s 788s Creating config file /etc/papersize with new version 788s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 788s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 788s Setting up libxpm4:amd64 (1:3.5.17-1) ... 788s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 788s Setting up libxi6:amd64 (2:1.8.1-1) ... 788s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 788s Setting up libdatrie1:amd64 (0.2.13-3) ... 788s Setting up libjs-popper.js (1.16.1+ds-6) ... 788s Setting up libxcb-render0:amd64 (1.15-1) ... 788s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 788s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 788s Setting up libjs-lunr (2.3.9~dfsg-2) ... 788s Setting up unzip (6.0-28ubuntu3) ... 788s Setting up liblatex-tounicode-perl (0.54-2) ... 788s Setting up x11-common (1:7.7+23ubuntu2) ... 788s Setting up node-html5shiv (3.7.3+dfsg-5) ... 788s Setting up libdeflate0:amd64 (1.19-1) ... 788s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 788s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 788s Setting up libxcb-shm0:amd64 (1.15-1) ... 788s Setting up libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 788s Setting up libbigwig0:amd64 (0.4.7+dfsg-3) ... 788s Setting up libpaper-utils (1.1.29) ... 788s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ... 788s Setting up libjs-modernizr (2.6.2+ds1-5) ... 788s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ... 788s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 788s Setting up libjs-es5-shim (4.6.7-2) ... 788s Setting up tex-common (6.18) ... 788s update-language: texlive-base not installed and configured, doing nothing! 788s Setting up libio-string-perl (1.08-4) ... 788s Setting up zip (3.0-13) ... 788s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 788s Setting up libblas3:amd64 (3.12.0-3) ... 788s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 788s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 788s Setting up libpkgconf3:amd64 (1.8.1-2) ... 788s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 788s Setting up libteckit0:amd64 (2.5.12+ds1-1) ... 788s Setting up t1utils (1.41-4build2) ... 788s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ... 788s Setting up libtexlua53-5:amd64 (2023.20230311.66589-9) ... 788s Setting up libjs-d3 (3.5.17-4) ... 788s Setting up fonts-dejavu-mono (2.37-8) ... 788s Setting up libmpc3:amd64 (1.3.1-1) ... 788s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ... 788s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... 788s Setting up icu-devtools (74.2-1ubuntu1) ... 788s Setting up fonts-dejavu-core (2.37-8) ... 788s Setting up pkgconf-bin (1.8.1-2) ... 788s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 788s Setting up libkpathsea6:amd64 (2023.20230311.66589-9) ... 788s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 788s Setting up libwebp7:amd64 (1.3.2-0.4) ... 788s Setting up liblzma-dev:amd64 (5.4.5-0.3) ... 788s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ... 788s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 788s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 788s Setting up libnsl-dev:amd64 (1.3.0-3) ... 788s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 788s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 788s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 788s Setting up fonts-lmodern (2.005-1) ... 788s Setting up liblua5.4-0:amd64 (5.4.6-3) ... 788s Setting up libharfbuzz0b:amd64 (8.3.0-2) ... 788s Setting up libthai-data (0.1.29-2) ... 788s Setting up libssh2-1:amd64 (1.11.0-4) ... 788s Setting up node-bootstrap-sass (3.4.3-2) ... 788s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 788s Setting up libxss1:amd64 (1:1.2.3-1build2) ... 788s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 788s Setting up pandoc-data (3.1.3-1) ... 788s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ... 788s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 788s Setting up libisl23:amd64 (0.26-3) ... 788s Setting up libc-dev-bin (2.39-0ubuntu2) ... 788s Setting up node-normalize.css (8.0.1-5) ... 788s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 788s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 788s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 788s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 788s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 788s Setting up libblas-dev:amd64 (3.12.0-3) ... 788s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 788s Setting up dctrl-tools (2.24-3build2) ... 788s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 788s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 788s Setting up libhttp-parser2.9:amd64 (2.9.4-6) ... 788s Setting up libsynctex2:amd64 (2023.20230311.66589-9) ... 788s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 788s Setting up libpotrace0:amd64 (1.16-2) ... 788s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 788s Setting up libice6:amd64 (2:1.0.10-1build2) ... 788s Setting up liblapack3:amd64 (3.12.0-3) ... 788s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 788s Setting up libhts3:amd64 (1.18+ds-1) ... 788s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 788s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 788s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 788s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 788s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 788s Setting up pkgconf:amd64 (1.8.1-2) ... 788s Setting up libthai0:amd64 (0.1.29-2) ... 788s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 788s Setting up libptexenc1:amd64 (2023.20230311.66589-9) ... 788s Setting up pandoc (3.1.3+ds-2) ... 788s Setting up liblapack-dev:amd64 (3.12.0-3) ... 788s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 788s Setting up megadepth (1.2.0-4) ... 788s Setting up pkg-config:amd64 (1.8.1-2) ... 788s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 788s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 788s Setting up libgit2-1.7:amd64 (1.7.2+ds-1ubuntu1) ... 788s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ... 788s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 788s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 788s Setting up libsm6:amd64 (2:1.2.3-1build2) ... 788s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ... 788s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 788s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 788s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 788s Setting up fontconfig (2.15.0-1ubuntu1) ... 790s Regenerating fonts cache... done. 790s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 790s Setting up libxft2:amd64 (2.3.6-1) ... 790s Setting up libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 790s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 790s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ... 790s Setting up cpp-13 (13.2.0-17ubuntu2) ... 790s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 790s Setting up libtk8.6:amd64 (8.6.13-2) ... 790s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... 790s Setting up libreadline-dev:amd64 (8.2-3) ... 790s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 790s Setting up libcairo2:amd64 (1.18.0-1) ... 790s Setting up gcc-13 (13.2.0-17ubuntu2) ... 790s Setting up libxt6:amd64 (1:1.2.1-1.1) ... 790s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 790s Setting up cpp (4:13.2.0-7ubuntu1) ... 790s Setting up libboost-dev:amd64 (1.83.0.1ubuntu2) ... 790s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 790s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 790s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 790s Setting up libxmu6:amd64 (2:1.1.3-3) ... 790s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 790s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 790s Setting up libpng-dev:amd64 (1.6.43-1) ... 790s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 790s Setting up libxaw7:amd64 (2:1.0.14-1) ... 790s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 790s Setting up gcc (4:13.2.0-7ubuntu1) ... 790s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 790s Setting up r-base-core (4.3.2-1build1) ... 790s 790s Creating config file /etc/R/Renviron with new version 791s Setting up r-cran-crayon (1.5.2-1) ... 791s Setting up r-cran-sourcetools (0.1.7-1-1) ... 791s Setting up r-cran-futile.options (1.0.1-3build1) ... 791s Setting up r-cran-lattice (0.22-5-1) ... 791s Setting up r-cran-ps (1.7.6-1) ... 791s Setting up r-cran-formatr (1.14-1) ... 791s Setting up r-cran-zip (2.3.1-1) ... 791s Setting up r-cran-xml (3.99-0.16.1-1) ... 791s Setting up r-cran-whisker (0.4.1-1) ... 791s Setting up texlive-binaries (2023.20230311.66589-9) ... 791s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 791s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 791s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 791s Setting up r-cran-lazyeval (0.2.2-1build1) ... 791s Setting up r-cran-clipr (0.8.0-1) ... 791s Setting up r-cran-commonmark (1.9.1-1) ... 791s Setting up r-cran-r6 (2.5.1-1) ... 791s Setting up r-cran-pkgkitten (0.2.3-1) ... 791s Setting up texlive-base (2023.20240207-1) ... 791s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 791s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 792s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 792s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 792s Setting up r-cran-magrittr (2.0.3-1) ... 792s Setting up r-cran-rappdirs (0.3.3-1) ... 792s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 792s Setting up r-cran-littler (0.3.19-1) ... 792s Setting up r-cran-bh (1.84.0-1) ... 792s Setting up r-cran-fs (1.6.3+dfsg-1) ... 792s Setting up r-cran-rcpp (1.0.12-1) ... 792s Setting up r-cran-curl (5.2.0+dfsg-1) ... 792s Setting up r-cran-codetools (0.2-19-1) ... 792s Setting up g++-13 (13.2.0-17ubuntu2) ... 792s Setting up r-cran-brio (1.1.4-1) ... 792s Setting up r-cran-diffobj (0.3.5-1) ... 792s Setting up r-bioc-biocgenerics (0.48.1-2) ... 792s Setting up r-cran-rlang (1.1.3-1) ... 792s Setting up r-cran-matrixstats (1.2.0-1) ... 792s Setting up littler (0.3.19-1) ... 792s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 792s Setting up r-cran-xfun (0.41+dfsg-1) ... 792s Setting up r-cran-sys (3.4.2-1) ... 792s Setting up r-cran-withr (2.5.0-1) ... 792s Setting up r-cran-processx (3.8.3-1) ... 792s Setting up r-cran-mime (0.12-1) ... 792s Setting up r-cran-praise (1.0.0-4build1) ... 792s Setting up r-cran-generics (0.1.3-1) ... 792s Setting up r-cran-base64enc (0.1-3-3) ... 792s Setting up r-cran-abind (1.4-5-2) ... 792s Setting up r-cran-digest (0.6.34-1) ... 792s Setting up r-cran-yaml (2.3.8-1) ... 792s Setting up r-cran-lambda.r (1.2.4-2build1) ... 792s Setting up r-cran-evaluate (0.23-1) ... 792s Setting up r-cran-highr (0.10+dfsg-1) ... 792s Setting up r-cran-prettyunits (1.2.0-1) ... 792s Setting up r-cran-fansi (1.0.5-1) ... 792s Setting up r-cran-snow (1:0.4.4-2) ... 792s Setting up r-cran-glue (1.7.0-1) ... 792s Setting up r-cran-bit (4.0.5-1) ... 792s Setting up r-cran-xtable (1:1.8-4-2) ... 792s Setting up r-cran-cli (3.6.2-1) ... 792s Setting up gfortran (4:13.2.0-7ubuntu1) ... 792s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 792s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 792s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 792s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 792s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 792s Setting up r-cran-bitops (1.0-7-1) ... 792s Setting up r-cran-rprojroot (2.0.4-1) ... 792s Setting up r-cran-bit64 (4.0.5-1) ... 792s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 792s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 792s Setting up r-cran-askpass (1.2.0-1) ... 792s Setting up r-cran-fastmap (1.1.1-1) ... 792s Setting up r-cran-r.methodss3 (1.8.2-1) ... 792s Setting up r-bioc-biobase (2.62.0-1) ... 792s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 792s Setting up r-cran-rstudioapi (0.15.0-1) ... 792s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 792s Setting up r-cran-utf8 (1.2.4-1) ... 792s Setting up r-cran-stringi (1.8.3-1) ... 792s Setting up texlive-latex-base (2023.20240207-1) ... 792s Setting up r-cran-rex (1.2.1-1) ... 792s Setting up r-cran-gitcreds (0.1.2-1) ... 792s Setting up r-cran-cpp11 (0.4.7-1) ... 792s Setting up r-cran-ini (0.3.1-2build1) ... 792s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 792s Setting up r-cran-futile.logger (1.4.3-4build1) ... 792s Setting up r-cran-later (1.3.2+dfsg-1) ... 792s Setting up r-cran-matrix (1.6-5-1) ... 792s Setting up r-cran-tinytex (0.49-1) ... 792s Setting up r-cran-knitr (1.45+dfsg-1) ... 792s Setting up g++ (4:13.2.0-7ubuntu1) ... 792s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 792s Setting up r-cran-cachem (1.0.8-1) ... 792s Setting up build-essential (12.10ubuntu1) ... 792s Setting up r-bioc-iranges (2.36.0-1) ... 792s Setting up r-cran-rjson (0.2.21-1) ... 792s Setting up r-cran-tzdb (0.4.0-2) ... 792s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 792s Setting up r-cran-sessioninfo (1.2.2-1) ... 792s Setting up r-cran-restfulr (0.0.15-1) ... 792s Setting up r-cran-vctrs (0.6.5-1) ... 792s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 792s Setting up r-cran-ellipsis (0.3.2-2) ... 792s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 792s Setting up r-base-dev (4.3.2-1build1) ... 792s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 792s Setting up r-cran-stringr (1.5.1-1) ... 792s Setting up r-bioc-biocparallel (1.36.0-1) ... 792s Setting up r-cran-callr (3.7.3-2) ... 792s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 792s Setting up r-cran-desc (1.4.3-1) ... 792s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 792s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 792s Setting up r-cran-r.oo (1.26.0-1) ... 792s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 792s Setting up texlive-bibtex-extra (2023.20240207-1) ... 792s Setting up r-cran-httr2 (1.0.0-1) ... 792s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 792s Setting up r-cran-httr (1.4.7+dfsg-1) ... 792s Setting up r-cran-hms (1.1.3-1) ... 792s Setting up r-cran-memoise (2.0.1-1) ... 792s Setting up r-cran-covr (3.6.4+dfsg-1) ... 792s Setting up r-cran-promises (1.2.1+dfsg-1) ... 792s Setting up r-cran-purrr (1.0.2-1) ... 792s Setting up r-cran-credentials (2.0.1-1) ... 792s Setting up r-cran-htmltools (0.5.7-1) ... 792s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 792s Setting up r-bioc-xvector (0.42.0-1) ... 792s Setting up r-cran-pkgbuild (1.4.3-1) ... 792s Setting up r-cran-sass (0.4.8+dfsg-1) ... 792s Setting up r-cran-dplyr (1.1.4-1) ... 792s Setting up r-cran-gh (1.4.0-1) ... 792s Setting up r-cran-progress (1.2.3-1) ... 792s Setting up r-cran-pkgload (1.3.4-1) ... 792s Setting up r-cran-r.utils (2.12.3-1) ... 792s Setting up r-cran-vroom (1.6.5-1) ... 792s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 792s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 792s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 792s Setting up r-cran-rematch2 (2.1.2-2build1) ... 792s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 792s Setting up r-cran-fontawesome (0.5.2-1) ... 792s Setting up r-cran-gert (2.0.1+dfsg-1) ... 792s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 792s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 792s Setting up r-cran-readr (2.1.5-1) ... 792s Setting up r-cran-waldo (0.5.2-1build1) ... 792s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 792s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 792s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 792s Setting up r-cran-usethis (2.2.2-1) ... 792s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 792s Setting up r-cran-testthat (3.2.1-1) ... 792s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 792s Setting up r-bioc-genomicalignments (1.38.2-1) ... 792s Setting up r-cran-bookdown (0.37+dfsg-1) ... 792s Setting up r-bioc-rtracklayer (1.62.0-1) ... 792s Setting up r-cran-cmdfun (1.0.2-2) ... 792s Setting up r-bioc-megadepth (1.12.0+ds-2) ... 792s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 792s Processing triggers for libc-bin (2.39-0ubuntu2) ... 793s Processing triggers for man-db (2.12.0-3) ... 794s Processing triggers for install-info (7.1-3) ... 794s Processing triggers for tex-common (6.18) ... 795s Running updmap-sys. This may take some time... done. 795s Running mktexlsr /var/lib/texmf ... done. 795s Building format(s) --all. 827s This may take some time... done. 831s Reading package lists... 831s Building dependency tree... 831s Reading state information... 831s Starting pkgProblemResolver with broken count: 0 831s Starting 2 pkgProblemResolver with broken count: 0 831s Done 832s The following NEW packages will be installed: 832s autopkgtest-satdep 832s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 832s Need to get 0 B/696 B of archives. 832s After this operation, 0 B of additional disk space will be used. 832s Get:1 /tmp/autopkgtest.3LlRfv/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 832s Selecting previously unselected package autopkgtest-satdep. 833s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 123048 files and directories currently installed.) 833s Preparing to unpack .../2-autopkgtest-satdep.deb ... 833s Unpacking autopkgtest-satdep (0) ... 833s Setting up autopkgtest-satdep (0) ... 834s (Reading database ... 123048 files and directories currently installed.) 834s Removing autopkgtest-satdep (0) ... 835s autopkgtest [03:15:36]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 835s autopkgtest [03:15:36]: test pkg-r-autopkgtest: [----------------------- 835s Test: Try to load the R library megadepth 835s 835s R version 4.3.2 (2023-10-31) -- "Eye Holes" 835s Copyright (C) 2023 The R Foundation for Statistical Computing 835s Platform: x86_64-pc-linux-gnu (64-bit) 835s 835s R is free software and comes with ABSOLUTELY NO WARRANTY. 835s You are welcome to redistribute it under certain conditions. 835s Type 'license()' or 'licence()' for distribution details. 835s 835s R is a collaborative project with many contributors. 835s Type 'contributors()' for more information and 835s 'citation()' on how to cite R or R packages in publications. 835s 835s Type 'demo()' for some demos, 'help()' for on-line help, or 835s 'help.start()' for an HTML browser interface to help. 835s Type 'q()' to quit R. 835s 835s > library('megadepth') 838s > 838s > 838s Other tests are currently unsupported! 838s They will be progressively added. 838s autopkgtest [03:15:39]: test pkg-r-autopkgtest: -----------------------] 838s autopkgtest [03:15:39]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 838s pkg-r-autopkgtest PASS 838s autopkgtest [03:15:39]: @@@@@@@@@@@@@@@@@@@@ summary 838s pkg-r-autopkgtest PASS 856s Creating nova instance adt-noble-i386-r-bioc-megadepth-20240322-030140-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...