0s autopkgtest [02:58:57]: starting date and time: 2024-03-22 02:58:57+0000
  0s autopkgtest [02:58:57]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [02:58:57]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.f_kaayma/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-matrixgenerics --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-10.secgroup --name adt-noble-i386-r-bioc-matrixgenerics-20240322-025857-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
521s autopkgtest [03:07:38]: testbed dpkg architecture: amd64
521s autopkgtest [03:07:38]: testbed apt version: 2.7.12
522s autopkgtest [03:07:39]: test architecture: i386
522s autopkgtest [03:07:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup
522s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
522s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3805 kB]
522s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
522s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB]
522s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB]
522s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB]
522s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB]
522s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B]
522s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB]
522s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B]
522s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B]
522s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1277 kB]
522s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4237 kB]
522s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B]
522s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB]
522s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB]
522s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B]
526s Fetched 11.3 MB in 2s (6930 kB/s)
526s Reading package lists...
528s Reading package lists...
528s Building dependency tree...
528s Reading state information...
528s Calculating upgrade...
529s The following packages will be upgraded:
529s   cloud-init fonts-ubuntu-console python3-markupsafe
529s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
529s Need to get 629 kB of archives.
529s After this operation, 11.3 kB disk space will be freed.
529s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB]
529s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB]
529s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB]
529s Preconfiguring packages ...
529s Fetched 629 kB in 0s (22.6 MB/s)
529s (Reading database ... 
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(Reading database ... 20%
(Reading database ... 25%
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(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71865 files and directories currently installed.)
529s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ...
529s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ...
529s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ...
529s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ...
529s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ...
530s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ...
530s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ...
530s Setting up cloud-init (24.1.2-0ubuntu1) ...
531s Setting up python3-markupsafe (2.1.5-1build1) ...
531s Processing triggers for man-db (2.12.0-3) ...
532s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
532s Reading package lists...
533s Building dependency tree...
533s Reading state information...
533s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
533s sh: Attempting to set up Debian/Ubuntu apt sources automatically
533s sh: Distribution appears to be Ubuntu
534s Reading package lists...
535s Building dependency tree...
535s Reading state information...
535s eatmydata is already the newest version (131-1).
535s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
535s Reading package lists...
535s Building dependency tree...
535s Reading state information...
536s dbus is already the newest version (1.14.10-4ubuntu1).
536s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
536s Reading package lists...
536s Building dependency tree...
536s Reading state information...
536s rng-tools-debian is already the newest version (2.4).
536s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
536s Reading package lists...
537s Building dependency tree...
537s Reading state information...
537s The following packages will be REMOVED:
537s   cloud-init* python3-configobj* python3-debconf*
537s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
537s After this operation, 3256 kB disk space will be freed.
537s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71864 files and directories currently installed.)
537s Removing cloud-init (24.1.2-0ubuntu1) ...
538s Removing python3-configobj (5.0.8-3) ...
538s Removing python3-debconf (1.5.86) ...
538s Processing triggers for man-db (2.12.0-3) ...
538s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71475 files and directories currently installed.)
538s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
539s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
539s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
539s invoke-rc.d: policy-rc.d denied execution of try-restart.
539s Reading package lists...
540s Building dependency tree...
540s Reading state information...
540s linux-generic is already the newest version (6.8.0-11.11+1).
540s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
540s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
540s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
540s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
542s Reading package lists...
542s Reading package lists...
543s Building dependency tree...
543s Reading state information...
543s Calculating upgrade...
543s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
543s Reading package lists...
543s Building dependency tree...
543s Reading state information...
544s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
544s autopkgtest [03:08:01]: rebooting testbed after setup commands that affected boot
575s autopkgtest [03:08:32]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024
575s autopkgtest [03:08:32]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-matrixgenerics
576s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-matrixgenerics 1.14.0-1 (dsc) [2204 B]
576s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-matrixgenerics 1.14.0-1 (tar) [31.2 kB]
576s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-matrixgenerics 1.14.0-1 (diff) [5360 B]
577s gpgv: Signature made Wed Nov 29 20:07:31 2023 UTC
577s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
577s gpgv:                issuer "tillea@rki.de"
577s gpgv: Can't check signature: No public key
577s dpkg-source: warning: cannot verify inline signature for ./r-bioc-matrixgenerics_1.14.0-1.dsc: no acceptable signature found
577s autopkgtest [03:08:34]: testing package r-bioc-matrixgenerics version 1.14.0-1
577s autopkgtest [03:08:34]: build not needed
580s autopkgtest [03:08:37]: test pkg-r-autopkgtest: preparing testbed
584s Note, using file '/tmp/autopkgtest.lTMoJa/1-autopkgtest-satdep.dsc' to get the build dependencies
584s Reading package lists...
585s Building dependency tree...
585s Reading state information...
585s Starting pkgProblemResolver with broken count: 0
585s Starting 2 pkgProblemResolver with broken count: 0
585s Done
585s The following NEW packages will be installed:
585s   build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu
585s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
585s   g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13
585s   gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13
585s   gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8
585s   libatomic1 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2
585s   libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
585s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
585s   libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
585s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev
585s   liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
585s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
585s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
585s   libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 libreadline-dev
585s   libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0
585s   libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0
585s   libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev littler
585s   pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
585s   r-bioc-biobase r-bioc-biocgenerics r-bioc-delayedarray
585s   r-bioc-delayedmatrixstats r-bioc-genomeinfodb r-bioc-genomeinfodbdata
585s   r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-s4arrays
585s   r-bioc-s4vectors r-bioc-sparsearray r-bioc-sparsematrixstats
585s   r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind
585s   r-cran-bitops r-cran-brio r-cran-callr r-cran-cli r-cran-crayon r-cran-desc
585s   r-cran-diffobj r-cran-digest r-cran-evaluate r-cran-fansi r-cran-fs
585s   r-cran-glue r-cran-jsonlite r-cran-lattice r-cran-lifecycle r-cran-littler
585s   r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-pillar
585s   r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload
585s   r-cran-praise r-cran-processx r-cran-ps r-cran-r6 r-cran-rcpp r-cran-rcurl
585s   r-cran-rematch2 r-cran-rlang r-cran-rprojroot r-cran-testthat r-cran-tibble
585s   r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr rpcsvc-proto unzip
585s   x11-common xdg-utils zip zlib1g-dev
585s 0 upgraded, 163 newly installed, 0 to remove and 0 not upgraded.
585s Need to get 191 MB of archives.
585s After this operation, 539 MB of additional disk space will be used.
585s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB]
585s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB]
585s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB]
585s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB]
585s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB]
585s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB]
585s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB]
585s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB]
585s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB]
585s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB]
586s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B]
586s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
586s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
586s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB]
586s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB]
586s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB]
586s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB]
586s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB]
586s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB]
586s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB]
586s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB]
586s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB]
586s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB]
586s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB]
586s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB]
586s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB]
586s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
586s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
586s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB]
586s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB]
586s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB]
586s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
586s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
586s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
586s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB]
586s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
586s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
586s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB]
586s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB]
586s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB]
586s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB]
586s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB]
586s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB]
586s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB]
586s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B]
586s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B]
586s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB]
586s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB]
586s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB]
586s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB]
586s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB]
586s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB]
586s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B]
586s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB]
586s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB]
586s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB]
586s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB]
586s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB]
586s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB]
586s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
586s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB]
586s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB]
586s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB]
586s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB]
586s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
586s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
586s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
586s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB]
586s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB]
586s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB]
586s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB]
586s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB]
586s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB]
586s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB]
586s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB]
586s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB]
586s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB]
586s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B]
586s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB]
586s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB]
586s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B]
586s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB]
586s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB]
586s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB]
586s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB]
586s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB]
586s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB]
586s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB]
586s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB]
586s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB]
586s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB]
586s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB]
586s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB]
586s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B]
586s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB]
586s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB]
586s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB]
586s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB]
586s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
586s Get:100 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB]
586s Get:101 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB]
586s Get:102 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B]
586s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB]
586s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB]
586s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B]
586s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB]
586s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B]
586s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
586s Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
586s Get:110 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB]
586s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB]
586s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB]
587s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB]
587s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB]
587s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB]
587s Get:116 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB]
587s Get:117 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB]
587s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB]
587s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB]
587s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
587s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB]
587s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB]
587s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB]
587s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
587s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB]
587s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsematrixstats amd64 1.14.0+dfsg-1 [829 kB]
587s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedmatrixstats all 1.24.0+ds-1 [483 kB]
587s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB]
587s Get:129 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB]
587s Get:130 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
587s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
587s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB]
587s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB]
587s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB]
587s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB]
587s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB]
587s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB]
587s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB]
587s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB]
587s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB]
587s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB]
587s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB]
587s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB]
587s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB]
587s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB]
587s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB]
587s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB]
587s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB]
587s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
587s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
587s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
587s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
587s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
587s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB]
587s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
587s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB]
587s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB]
587s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB]
587s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
587s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB]
587s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB]
587s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB]
587s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB]
587s Preconfiguring packages ...
587s Fetched 191 MB in 2s (123 MB/s)
588s Selecting previously unselected package libc-dev-bin.
588s (Reading database ... 
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71420 files and directories currently installed.)
588s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ...
588s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
588s Selecting previously unselected package linux-libc-dev:amd64.
588s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ...
588s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ...
588s Selecting previously unselected package libcrypt-dev:amd64.
588s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ...
588s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ...
588s Selecting previously unselected package libtirpc-dev:amd64.
588s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ...
588s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
588s Selecting previously unselected package libnsl-dev:amd64.
588s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ...
588s Unpacking libnsl-dev:amd64 (1.3.0-3) ...
588s Selecting previously unselected package rpcsvc-proto.
588s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ...
588s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
588s Selecting previously unselected package libc6-dev:amd64.
588s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ...
588s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ...
588s Selecting previously unselected package libisl23:amd64.
588s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ...
588s Unpacking libisl23:amd64 (0.26-3) ...
588s Selecting previously unselected package libmpc3:amd64.
588s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ...
588s Unpacking libmpc3:amd64 (1.3.1-1) ...
588s Selecting previously unselected package cpp-13-x86-64-linux-gnu.
588s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
588s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
588s Selecting previously unselected package cpp-13.
588s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ...
588s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
588s Selecting previously unselected package cpp-x86-64-linux-gnu.
588s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
588s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
588s Selecting previously unselected package cpp.
588s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ...
589s Unpacking cpp (4:13.2.0-7ubuntu1) ...
589s Selecting previously unselected package libcc1-0:amd64.
589s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ...
589s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ...
589s Selecting previously unselected package libgomp1:amd64.
589s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ...
589s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ...
589s Selecting previously unselected package libitm1:amd64.
589s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ...
589s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ...
589s Selecting previously unselected package libatomic1:amd64.
589s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ...
589s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ...
589s Selecting previously unselected package libasan8:amd64.
589s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ...
589s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ...
589s Selecting previously unselected package liblsan0:amd64.
589s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ...
589s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ...
589s Selecting previously unselected package libtsan2:amd64.
589s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ...
589s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ...
589s Selecting previously unselected package libubsan1:amd64.
589s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ...
589s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ...
589s Selecting previously unselected package libhwasan0:amd64.
589s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ...
589s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ...
589s Selecting previously unselected package libquadmath0:amd64.
589s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ...
589s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ...
589s Selecting previously unselected package libgcc-13-dev:amd64.
589s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ...
589s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
589s Selecting previously unselected package gcc-13-x86-64-linux-gnu.
589s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
589s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
589s Selecting previously unselected package gcc-13.
589s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ...
589s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
590s Selecting previously unselected package gcc-x86-64-linux-gnu.
590s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
590s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
590s Selecting previously unselected package gcc.
590s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ...
590s Unpacking gcc (4:13.2.0-7ubuntu1) ...
590s Selecting previously unselected package libstdc++-13-dev:amd64.
590s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ...
590s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
590s Selecting previously unselected package g++-13-x86-64-linux-gnu.
590s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
590s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
590s Selecting previously unselected package g++-13.
590s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ...
590s Unpacking g++-13 (13.2.0-17ubuntu2) ...
590s Selecting previously unselected package g++-x86-64-linux-gnu.
590s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
590s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
590s Selecting previously unselected package g++.
590s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ...
590s Unpacking g++ (4:13.2.0-7ubuntu1) ...
590s Selecting previously unselected package build-essential.
590s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ...
590s Unpacking build-essential (12.10ubuntu1) ...
590s Selecting previously unselected package dctrl-tools.
590s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ...
590s Unpacking dctrl-tools (2.24-3build2) ...
590s Selecting previously unselected package fonts-dejavu-mono.
590s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ...
590s Unpacking fonts-dejavu-mono (2.37-8) ...
590s Selecting previously unselected package fonts-dejavu-core.
590s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ...
590s Unpacking fonts-dejavu-core (2.37-8) ...
590s Selecting previously unselected package fontconfig-config.
590s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ...
590s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
590s Selecting previously unselected package libfontconfig1:amd64.
590s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ...
590s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
590s Selecting previously unselected package fontconfig.
590s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ...
590s Unpacking fontconfig (2.15.0-1ubuntu1) ...
591s Selecting previously unselected package libgfortran5:amd64.
591s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_amd64.deb ...
591s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ...
591s Selecting previously unselected package libgfortran-13-dev:amd64.
591s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ...
591s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ...
591s Selecting previously unselected package gfortran-13-x86-64-linux-gnu.
591s Preparing to unpack .../042-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
591s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
591s Selecting previously unselected package gfortran-13.
591s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_amd64.deb ...
591s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
591s Selecting previously unselected package gfortran-x86-64-linux-gnu.
591s Preparing to unpack .../044-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
591s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
591s Selecting previously unselected package gfortran.
591s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ...
591s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
591s Selecting previously unselected package icu-devtools.
591s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu1_amd64.deb ...
591s Unpacking icu-devtools (74.2-1ubuntu1) ...
591s Selecting previously unselected package libblas3:amd64.
591s Preparing to unpack .../047-libblas3_3.12.0-3_amd64.deb ...
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599s 
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600s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ...
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600s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
600s Setting up r-bioc-delayedmatrixstats (1.24.0+ds-1) ...
600s Setting up r-cran-testthat (3.2.1-1) ...
600s Processing triggers for libc-bin (2.39-0ubuntu2) ...
600s Processing triggers for man-db (2.12.0-3) ...
601s Processing triggers for install-info (7.1-3) ...
608s Reading package lists...
608s Building dependency tree...
608s Reading state information...
608s Starting pkgProblemResolver with broken count: 0
608s Starting 2 pkgProblemResolver with broken count: 0
608s Done
609s The following NEW packages will be installed:
609s   autopkgtest-satdep
609s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
609s Need to get 0 B/696 B of archives.
609s After this operation, 0 B of additional disk space will be used.
609s Get:1 /tmp/autopkgtest.lTMoJa/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B]
609s Selecting previously unselected package autopkgtest-satdep.
609s (Reading database ... 
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609s Preparing to unpack .../2-autopkgtest-satdep.deb ...
609s Unpacking autopkgtest-satdep (0) ...
609s Setting up autopkgtest-satdep (0) ...
611s (Reading database ... 83042 files and directories currently installed.)
611s Removing autopkgtest-satdep (0) ...
612s autopkgtest [03:09:09]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
612s autopkgtest [03:09:09]: test pkg-r-autopkgtest: [-----------------------
612s Test: Try to load the R library MatrixGenerics
612s 
612s R version 4.3.2 (2023-10-31) -- "Eye Holes"
612s Copyright (C) 2023 The R Foundation for Statistical Computing
612s Platform: x86_64-pc-linux-gnu (64-bit)
612s 
612s R is free software and comes with ABSOLUTELY NO WARRANTY.
612s You are welcome to redistribute it under certain conditions.
612s Type 'license()' or 'licence()' for distribution details.
612s 
612s R is a collaborative project with many contributors.
612s Type 'contributors()' for more information and
612s 'citation()' on how to cite R or R packages in publications.
612s 
612s Type 'demo()' for some demos, 'help()' for on-line help, or
612s 'help.start()' for an HTML browser interface to help.
612s Type 'q()' to quit R.
612s 
613s > library('MatrixGenerics')
613s Loading required package: matrixStats
613s 
613s Attaching package: ‘MatrixGenerics’
613s 
613s > 
613s > 
613s The following objects are masked from ‘package:matrixStats’:
613s 
613s     colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
613s     colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
613s     colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
613s     colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
613s     colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
613s     colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
613s     colWeightedMeans, colWeightedMedians, colWeightedSds,
613s     colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
613s     rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
613s     rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
613s     rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
613s     rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
613s     rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
613s     rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
613s     rowWeightedSds, rowWeightedVars
613s 
613s Other tests are currently unsupported!
613s They will be progressively added.
613s autopkgtest [03:09:10]: test pkg-r-autopkgtest: -----------------------]
613s autopkgtest [03:09:10]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
613s pkg-r-autopkgtest    PASS
613s autopkgtest [03:09:10]: @@@@@@@@@@@@@@@@@@@@ summary
613s pkg-r-autopkgtest    PASS
633s Creating nova instance adt-noble-i386-r-bioc-matrixgenerics-20240322-025857-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...