0s autopkgtest [02:51:47]: starting date and time: 2024-03-22 02:51:47+0000
  0s autopkgtest [02:51:47]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [02:51:47]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3rk67gld/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-hypergraph --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-38.secgroup --name adt-noble-i386-r-bioc-hypergraph-20240322-025147-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
516s autopkgtest [03:00:23]: testbed dpkg architecture: amd64
516s autopkgtest [03:00:23]: testbed apt version: 2.7.12
516s autopkgtest [03:00:23]: test architecture: i386
516s autopkgtest [03:00:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup
516s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
517s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB]
517s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
517s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3805 kB]
517s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB]
517s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB]
517s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB]
517s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B]
517s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB]
517s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B]
517s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B]
517s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1277 kB]
517s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4237 kB]
517s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B]
517s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB]
517s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB]
517s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B]
520s Fetched 11.3 MB in 1s (7792 kB/s)
520s Reading package lists...
522s Reading package lists...
522s Building dependency tree...
522s Reading state information...
523s Calculating upgrade...
523s The following packages will be upgraded:
523s   cloud-init fonts-ubuntu-console python3-markupsafe
523s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
523s Need to get 629 kB of archives.
523s After this operation, 11.3 kB disk space will be freed.
523s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB]
523s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB]
523s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB]
523s Preconfiguring packages ...
523s Fetched 629 kB in 0s (20.2 MB/s)
523s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71865 files and directories currently installed.)
523s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ...
523s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ...
523s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ...
523s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ...
523s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ...
524s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ...
524s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ...
524s Setting up cloud-init (24.1.2-0ubuntu1) ...
525s Setting up python3-markupsafe (2.1.5-1build1) ...
525s Processing triggers for man-db (2.12.0-3) ...
526s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
526s Reading package lists...
527s Building dependency tree...
527s Reading state information...
528s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
528s sh: Attempting to set up Debian/Ubuntu apt sources automatically
528s Reading package lists...sh: Distribution appears to be Ubuntu
529s 
529s Building dependency tree...
529s Reading state information...
529s eatmydata is already the newest version (131-1).
529s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
529s Reading package lists...
529s Building dependency tree...
529s Reading state information...
530s dbus is already the newest version (1.14.10-4ubuntu1).
530s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
530s Reading package lists...
530s Building dependency tree...
530s Reading state information...
530s rng-tools-debian is already the newest version (2.4).
530s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
530s Reading package lists...
531s Building dependency tree...
531s Reading state information...
531s The following packages will be REMOVED:
531s   cloud-init* python3-configobj* python3-debconf*
531s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
531s After this operation, 3256 kB disk space will be freed.
531s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71864 files and directories currently installed.)
531s Removing cloud-init (24.1.2-0ubuntu1) ...
532s Removing python3-configobj (5.0.8-3) ...
532s Removing python3-debconf (1.5.86) ...
532s Processing triggers for man-db (2.12.0-3) ...
532s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71475 files and directories currently installed.)
532s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
533s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
533s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
533s invoke-rc.d: policy-rc.d denied execution of try-restart.
533s Reading package lists...
533s Building dependency tree...
533s Reading state information...
534s linux-generic is already the newest version (6.8.0-11.11+1).
534s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
534s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
534s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
534s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
536s Reading package lists...
536s Reading package lists...
536s Building dependency tree...
536s Reading state information...
537s Calculating upgrade...
537s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
537s Reading package lists...
537s Building dependency tree...
537s Reading state information...
537s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
537s autopkgtest [03:00:44]: rebooting testbed after setup commands that affected boot
556s autopkgtest [03:01:03]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024
556s autopkgtest [03:01:03]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-hypergraph
557s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-hypergraph 1.74.0-1 (dsc) [2104 B]
557s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-hypergraph 1.74.0-1 (tar) [8444 B]
557s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-hypergraph 1.74.0-1 (diff) [4296 B]
557s gpgv: Signature made Thu Nov 30 07:44:01 2023 UTC
557s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
557s gpgv:                issuer "tille@debian.org"
557s gpgv: Can't check signature: No public key
557s dpkg-source: warning: cannot verify inline signature for ./r-bioc-hypergraph_1.74.0-1.dsc: no acceptable signature found
558s autopkgtest [03:01:05]: testing package r-bioc-hypergraph version 1.74.0-1
561s autopkgtest [03:01:08]: build not needed
561s autopkgtest [03:01:08]: test pkg-r-autopkgtest: preparing testbed
564s Note, using file '/tmp/autopkgtest.jwBXmF/1-autopkgtest-satdep.dsc' to get the build dependencies
564s Reading package lists...
564s Building dependency tree...
564s Reading state information...
564s Starting pkgProblemResolver with broken count: 0
564s Starting 2 pkgProblemResolver with broken count: 0
564s Done
565s The following NEW packages will be installed:
565s   build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu
565s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
565s   g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13
565s   gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13
565s   gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8
565s   libatomic1 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2
565s   libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
565s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
565s   libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
565s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev
565s   liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
565s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
565s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
565s   libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 libreadline-dev
565s   libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0
565s   libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0
565s   libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev pkg-config
565s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
565s   r-bioc-biocgenerics r-bioc-graph r-bioc-hypergraph r-cran-runit rpcsvc-proto
565s   unzip x11-common xdg-utils zip zlib1g-dev
565s 0 upgraded, 110 newly installed, 0 to remove and 0 not upgraded.
565s Need to get 140 MB of archives.
565s After this operation, 459 MB of additional disk space will be used.
565s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB]
565s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB]
565s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB]
565s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB]
565s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB]
565s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB]
565s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB]
565s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB]
565s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB]
565s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB]
565s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B]
565s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
565s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
565s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB]
565s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB]
565s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB]
565s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB]
565s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB]
565s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB]
565s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB]
565s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB]
565s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB]
565s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB]
565s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB]
565s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB]
565s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB]
565s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
565s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
565s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB]
565s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB]
565s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB]
565s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
565s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
565s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
565s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB]
565s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
565s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
565s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB]
565s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB]
565s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB]
565s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB]
565s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB]
565s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB]
565s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB]
565s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B]
565s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B]
565s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB]
565s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB]
565s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB]
565s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB]
565s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB]
565s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB]
565s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B]
565s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB]
565s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB]
565s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB]
565s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB]
565s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB]
565s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB]
565s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
565s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB]
565s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB]
565s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB]
565s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB]
565s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
565s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
565s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
565s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB]
565s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB]
565s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB]
565s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB]
565s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB]
565s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB]
565s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB]
565s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB]
565s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB]
565s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB]
565s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B]
565s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB]
565s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB]
565s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B]
565s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB]
565s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB]
565s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB]
565s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB]
565s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB]
565s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB]
565s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB]
565s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB]
565s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB]
565s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB]
565s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB]
565s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB]
565s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B]
565s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB]
565s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB]
565s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB]
565s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB]
565s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B]
565s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB]
565s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB]
565s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
565s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB]
566s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB]
566s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B]
566s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
566s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
566s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-graph amd64 1.80.0-1 [1289 kB]
566s Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-hypergraph all 1.74.0-1 [172 kB]
566s Get:110 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-runit all 0.4.33-1 [377 kB]
566s Preconfiguring packages ...
566s Fetched 140 MB in 1s (134 MB/s)
566s Selecting previously unselected package libc-dev-bin.
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566s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ...
566s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
566s Selecting previously unselected package linux-libc-dev:amd64.
566s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ...
566s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ...
566s Selecting previously unselected package libcrypt-dev:amd64.
566s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ...
566s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ...
567s Selecting previously unselected package libtirpc-dev:amd64.
567s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ...
567s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
567s Selecting previously unselected package libnsl-dev:amd64.
567s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ...
567s Unpacking libnsl-dev:amd64 (1.3.0-3) ...
567s Selecting previously unselected package rpcsvc-proto.
567s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ...
567s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
567s Selecting previously unselected package libc6-dev:amd64.
567s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ...
567s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ...
567s Selecting previously unselected package libisl23:amd64.
567s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ...
567s Unpacking libisl23:amd64 (0.26-3) ...
567s Selecting previously unselected package libmpc3:amd64.
567s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ...
567s Unpacking libmpc3:amd64 (1.3.1-1) ...
567s Selecting previously unselected package cpp-13-x86-64-linux-gnu.
567s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
567s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
567s Selecting previously unselected package cpp-13.
567s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ...
567s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
567s Selecting previously unselected package cpp-x86-64-linux-gnu.
567s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
567s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
567s Selecting previously unselected package cpp.
567s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ...
567s Unpacking cpp (4:13.2.0-7ubuntu1) ...
567s Selecting previously unselected package libcc1-0:amd64.
567s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ...
567s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ...
567s Selecting previously unselected package libgomp1:amd64.
567s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ...
567s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ...
567s Selecting previously unselected package libitm1:amd64.
567s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ...
567s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ...
567s Selecting previously unselected package libatomic1:amd64.
567s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ...
567s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ...
567s Selecting previously unselected package libasan8:amd64.
567s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ...
567s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ...
567s Selecting previously unselected package liblsan0:amd64.
567s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ...
567s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ...
567s Selecting previously unselected package libtsan2:amd64.
567s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ...
567s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ...
567s Selecting previously unselected package libubsan1:amd64.
567s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ...
567s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ...
568s Selecting previously unselected package libhwasan0:amd64.
568s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ...
568s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ...
568s Selecting previously unselected package libquadmath0:amd64.
568s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ...
568s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ...
568s Selecting previously unselected package libgcc-13-dev:amd64.
568s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ...
568s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
568s Selecting previously unselected package gcc-13-x86-64-linux-gnu.
568s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
568s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
568s Selecting previously unselected package gcc-13.
568s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ...
568s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
568s Selecting previously unselected package gcc-x86-64-linux-gnu.
568s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
568s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
568s Selecting previously unselected package gcc.
568s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ...
568s Unpacking gcc (4:13.2.0-7ubuntu1) ...
568s Selecting previously unselected package libstdc++-13-dev:amd64.
568s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ...
568s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
568s Selecting previously unselected package g++-13-x86-64-linux-gnu.
568s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
568s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
569s Selecting previously unselected package g++-13.
569s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ...
569s Unpacking g++-13 (13.2.0-17ubuntu2) ...
569s Selecting previously unselected package g++-x86-64-linux-gnu.
569s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
569s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
569s Selecting previously unselected package g++.
569s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ...
569s Unpacking g++ (4:13.2.0-7ubuntu1) ...
569s Selecting previously unselected package build-essential.
569s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ...
569s Unpacking build-essential (12.10ubuntu1) ...
569s Selecting previously unselected package dctrl-tools.
569s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ...
569s Unpacking dctrl-tools (2.24-3build2) ...
569s Selecting previously unselected package fonts-dejavu-mono.
569s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ...
569s Unpacking fonts-dejavu-mono (2.37-8) ...
569s Selecting previously unselected package fonts-dejavu-core.
569s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ...
569s Unpacking fonts-dejavu-core (2.37-8) ...
569s Selecting previously unselected package fontconfig-config.
569s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ...
569s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
569s Selecting previously unselected package libfontconfig1:amd64.
569s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ...
569s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
569s Selecting previously unselected package fontconfig.
569s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ...
569s Unpacking fontconfig (2.15.0-1ubuntu1) ...
569s Selecting previously unselected package libgfortran5:amd64.
569s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_amd64.deb ...
569s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ...
569s Selecting previously unselected package libgfortran-13-dev:amd64.
569s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ...
569s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ...
569s Selecting previously unselected package gfortran-13-x86-64-linux-gnu.
569s Preparing to unpack .../042-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
569s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
569s Selecting previously unselected package gfortran-13.
569s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_amd64.deb ...
569s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
569s Selecting previously unselected package gfortran-x86-64-linux-gnu.
569s Preparing to unpack .../044-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
569s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
569s Selecting previously unselected package gfortran.
569s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ...
569s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
569s Selecting previously unselected package icu-devtools.
569s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu1_amd64.deb ...
569s Unpacking icu-devtools (74.2-1ubuntu1) ...
569s Selecting previously unselected package libblas3:amd64.
569s Preparing to unpack .../047-libblas3_3.12.0-3_amd64.deb ...
569s Unpacking libblas3:amd64 (3.12.0-3) ...
569s Selecting previously unselected package libblas-dev:amd64.
569s Preparing to unpack .../048-libblas-dev_3.12.0-3_amd64.deb ...
569s Unpacking libblas-dev:amd64 (3.12.0-3) ...
569s Selecting previously unselected package libbz2-dev:amd64.
569s Preparing to unpack .../049-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ...
569s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ...
570s Selecting previously unselected package libpixman-1-0:amd64.
570s Preparing to unpack .../050-libpixman-1-0_0.42.2-1_amd64.deb ...
570s Unpacking libpixman-1-0:amd64 (0.42.2-1) ...
570s Selecting previously unselected package libxcb-render0:amd64.
570s Preparing to unpack .../051-libxcb-render0_1.15-1_amd64.deb ...
570s Unpacking libxcb-render0:amd64 (1.15-1) ...
570s Selecting previously unselected package libxcb-shm0:amd64.
570s Preparing to unpack .../052-libxcb-shm0_1.15-1_amd64.deb ...
570s Unpacking libxcb-shm0:amd64 (1.15-1) ...
570s Selecting previously unselected package libxrender1:amd64.
570s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1_amd64.deb ...
570s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ...
570s Selecting previously unselected package libcairo2:amd64.
570s Preparing to unpack .../054-libcairo2_1.18.0-1_amd64.deb ...
570s Unpacking libcairo2:amd64 (1.18.0-1) ...
570s Selecting previously unselected package libdatrie1:amd64.
570s Preparing to unpack .../055-libdatrie1_0.2.13-3_amd64.deb ...
570s Unpacking libdatrie1:amd64 (0.2.13-3) ...
570s Selecting previously unselected package libdeflate0:amd64.
570s Preparing to unpack .../056-libdeflate0_1.19-1_amd64.deb ...
570s Unpacking libdeflate0:amd64 (1.19-1) ...
570s Selecting previously unselected package libgraphite2-3:amd64.
570s Preparing to unpack .../057-libgraphite2-3_1.3.14-2_amd64.deb ...
570s Unpacking libgraphite2-3:amd64 (1.3.14-2) ...
570s Selecting previously unselected package libharfbuzz0b:amd64.
570s Preparing to unpack .../058-libharfbuzz0b_8.3.0-2_amd64.deb ...
570s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ...
570s Selecting previously unselected package x11-common.
570s Preparing to unpack .../059-x11-common_1%3a7.7+23ubuntu2_all.deb ...
570s Unpacking x11-common (1:7.7+23ubuntu2) ...
570s Selecting previously unselected package libice6:amd64.
570s Preparing to unpack .../060-libice6_2%3a1.0.10-1build2_amd64.deb ...
570s Unpacking libice6:amd64 (2:1.0.10-1build2) ...
570s Selecting previously unselected package libicu-dev:amd64.
570s Preparing to unpack .../061-libicu-dev_74.2-1ubuntu1_amd64.deb ...
570s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ...
570s Selecting previously unselected package libjpeg-turbo8:amd64.
570s Preparing to unpack .../062-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ...
570s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ...
570s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
570s Preparing to unpack .../063-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ...
570s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ...
570s Selecting previously unselected package libjpeg8:amd64.
570s Preparing to unpack .../064-libjpeg8_8c-2ubuntu11_amd64.deb ...
570s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
570s Selecting previously unselected package libjpeg8-dev:amd64.
570s Preparing to unpack .../065-libjpeg8-dev_8c-2ubuntu11_amd64.deb ...
570s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ...
570s Selecting previously unselected package libjpeg-dev:amd64.
570s Preparing to unpack .../066-libjpeg-dev_8c-2ubuntu11_amd64.deb ...
570s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ...
570s Selecting previously unselected package liblapack3:amd64.
570s Preparing to unpack .../067-liblapack3_3.12.0-3_amd64.deb ...
570s Unpacking liblapack3:amd64 (3.12.0-3) ...
570s Selecting previously unselected package liblapack-dev:amd64.
570s Preparing to unpack .../068-liblapack-dev_3.12.0-3_amd64.deb ...
570s Unpacking liblapack-dev:amd64 (3.12.0-3) ...
570s Selecting previously unselected package liblerc4:amd64.
570s Preparing to unpack .../069-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ...
570s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ...
570s Selecting previously unselected package libncurses-dev:amd64.
570s Preparing to unpack .../070-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ...
570s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ...
570s Selecting previously unselected package libthai-data.
570s Preparing to unpack .../071-libthai-data_0.1.29-2_all.deb ...
570s Unpacking libthai-data (0.1.29-2) ...
570s Selecting previously unselected package libthai0:amd64.
570s Preparing to unpack .../072-libthai0_0.1.29-2_amd64.deb ...
570s Unpacking libthai0:amd64 (0.1.29-2) ...
570s Selecting previously unselected package libpango-1.0-0:amd64.
571s Preparing to unpack .../073-libpango-1.0-0_1.51.0+ds-4_amd64.deb ...
571s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ...
571s Selecting previously unselected package libpangoft2-1.0-0:amd64.
571s Preparing to unpack .../074-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ...
571s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ...
571s Selecting previously unselected package libpangocairo-1.0-0:amd64.
571s Preparing to unpack .../075-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ...
571s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ...
571s Selecting previously unselected package libpaper1:amd64.
571s Preparing to unpack .../076-libpaper1_1.1.29_amd64.deb ...
571s Unpacking libpaper1:amd64 (1.1.29) ...
571s Selecting previously unselected package libpaper-utils.
571s Preparing to unpack .../077-libpaper-utils_1.1.29_amd64.deb ...
571s Unpacking libpaper-utils (1.1.29) ...
571s Selecting previously unselected package libpcre2-16-0:amd64.
571s Preparing to unpack .../078-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ...
571s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ...
571s Selecting previously unselected package libpcre2-32-0:amd64.
571s Preparing to unpack .../079-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ...
571s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ...
571s Selecting previously unselected package libpcre2-posix3:amd64.
571s Preparing to unpack .../080-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ...
571s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ...
571s Selecting previously unselected package libpcre2-dev:amd64.
571s Preparing to unpack .../081-libpcre2-dev_10.42-4ubuntu1_amd64.deb ...
571s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ...
571s Selecting previously unselected package libpkgconf3:amd64.
571s Preparing to unpack .../082-libpkgconf3_1.8.1-2_amd64.deb ...
571s Unpacking libpkgconf3:amd64 (1.8.1-2) ...
571s Selecting previously unselected package zlib1g-dev:amd64.
571s Preparing to unpack .../083-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ...
571s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ...
571s Selecting previously unselected package libpng-dev:amd64.
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572s 
572s Creating config file /etc/papersize with new version
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572s Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
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573s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ...
573s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ...
573s Setting up zip (3.0-13) ...
573s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ...
573s Setting up libblas3:amd64 (3.12.0-3) ...
573s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
573s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
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573s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
573s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
573s Setting up pkgconf:amd64 (1.8.1-2) ...
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573s Setting up pkg-config:amd64 (1.8.1-2) ...
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573s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ...
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573s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
573s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ...
573s Setting up libsm6:amd64 (2:1.2.3-1build2) ...
573s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ...
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573s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ...
573s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
573s Setting up fontconfig (2.15.0-1ubuntu1) ...
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575s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ...
575s Setting up libxft2:amd64 (2.3.6-1) ...
575s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ...
575s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ...
575s Setting up cpp-13 (13.2.0-17ubuntu2) ...
575s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
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575s Setting up libreadline-dev:amd64 (8.2-3) ...
575s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
575s Setting up libcairo2:amd64 (1.18.0-1) ...
575s Setting up gcc-13 (13.2.0-17ubuntu2) ...
575s Setting up libxt6:amd64 (1:1.2.1-1.1) ...
575s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ...
575s Setting up cpp (4:13.2.0-7ubuntu1) ...
575s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ...
575s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ...
575s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ...
575s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
575s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
575s Setting up libpng-dev:amd64 (1.6.43-1) ...
575s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
575s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
575s Setting up gcc (4:13.2.0-7ubuntu1) ...
575s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
575s Setting up r-base-core (4.3.2-1build1) ...
575s 
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575s Setting up g++-13 (13.2.0-17ubuntu2) ...
575s Setting up r-bioc-biocgenerics (0.48.1-2) ...
575s Setting up gfortran (4:13.2.0-7ubuntu1) ...
575s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
575s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
575s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
575s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
575s Setting up r-cran-runit (0.4.33-1) ...
575s Setting up g++ (4:13.2.0-7ubuntu1) ...
575s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
575s Setting up build-essential (12.10ubuntu1) ...
575s Setting up r-bioc-graph (1.80.0-1) ...
575s Setting up r-base-dev (4.3.2-1build1) ...
575s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
575s Setting up r-bioc-hypergraph (1.74.0-1) ...
575s Processing triggers for libc-bin (2.39-0ubuntu2) ...
575s Processing triggers for man-db (2.12.0-3) ...
577s Processing triggers for install-info (7.1-3) ...
586s Reading package lists...
586s Building dependency tree...
586s Reading state information...
587s Starting pkgProblemResolver with broken count: 0
587s Starting 2 pkgProblemResolver with broken count: 0
587s Done
587s The following NEW packages will be installed:
587s   autopkgtest-satdep
587s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
587s Need to get 0 B/696 B of archives.
587s After this operation, 0 B of additional disk space will be used.
587s Get:1 /tmp/autopkgtest.jwBXmF/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B]
588s Selecting previously unselected package autopkgtest-satdep.
588s (Reading database ... 
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588s Preparing to unpack .../2-autopkgtest-satdep.deb ...
588s Unpacking autopkgtest-satdep (0) ...
588s Setting up autopkgtest-satdep (0) ...
589s (Reading database ... 77391 files and directories currently installed.)
589s Removing autopkgtest-satdep (0) ...
589s autopkgtest [03:01:36]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
589s autopkgtest [03:01:36]: test pkg-r-autopkgtest: [-----------------------
589s Test: Try to load the R library hypergraph
589s 
589s R version 4.3.2 (2023-10-31) -- "Eye Holes"
589s Copyright (C) 2023 The R Foundation for Statistical Computing
589s Platform: x86_64-pc-linux-gnu (64-bit)
589s 
589s R is free software and comes with ABSOLUTELY NO WARRANTY.
589s You are welcome to redistribute it under certain conditions.
589s Type 'license()' or 'licence()' for distribution details.
589s 
589s R is a collaborative project with many contributors.
589s Type 'contributors()' for more information and
589s 'citation()' on how to cite R or R packages in publications.
589s 
589s Type 'demo()' for some demos, 'help()' for on-line help, or
589s 'help.start()' for an HTML browser interface to help.
589s Type 'q()' to quit R.
589s 
590s > library('hypergraph')
590s Loading required package: graph
590s Loading required package: BiocGenerics
590s 
590s Attaching package: ‘BiocGenerics’
590s 
590s The following objects are masked from ‘package:stats’:
590s 
590s     IQR, mad, sd, var, xtabs
590s 
590s The following objects are masked from ‘package:base’:
590s 
590s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
590s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
590s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
590s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
590s     Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort,
590s     table, tapply, union, unique, unsplit, which.max, which.min
590s 
590s > 
590s > 
590s Other tests are currently unsupported!
590s They will be progressively added.
590s autopkgtest [03:01:37]: test pkg-r-autopkgtest: -----------------------]
590s autopkgtest [03:01:37]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
590s pkg-r-autopkgtest    PASS
591s autopkgtest [03:01:38]: @@@@@@@@@@@@@@@@@@@@ summary
591s pkg-r-autopkgtest    PASS
600s Creating nova instance adt-noble-i386-r-bioc-hypergraph-20240322-025147-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...