0s autopkgtest [02:48:07]: starting date and time: 2024-03-22 02:48:07+0000 0s autopkgtest [02:48:07]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [02:48:07]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.fa11e3rr/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-gviz --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-23.secgroup --name adt-noble-i386-r-bioc-gviz-20240322-024807-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 888s autopkgtest [03:02:55]: testbed dpkg architecture: amd64 888s autopkgtest [03:02:55]: testbed apt version: 2.7.12 888s autopkgtest [03:02:55]: test architecture: i386 888s autopkgtest [03:02:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 888s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 888s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 888s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 888s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3805 kB] 888s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 888s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB] 888s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB] 888s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 888s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 888s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 888s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 888s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1277 kB] 888s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4237 kB] 888s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 888s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 888s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 888s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 892s Fetched 11.3 MB in 1s (7585 kB/s) 892s Reading package lists... 893s Reading package lists... 894s Building dependency tree... 894s Reading state information... 894s Calculating upgrade... 894s The following packages will be upgraded: 894s cloud-init fonts-ubuntu-console python3-markupsafe 894s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 894s Need to get 629 kB of archives. 894s After this operation, 11.3 kB disk space will be freed. 894s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 894s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 894s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 895s Preconfiguring packages ... 895s Fetched 629 kB in 0s (26.0 MB/s) 895s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 895s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 895s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 895s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 895s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 895s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 895s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 895s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 895s Setting up cloud-init (24.1.2-0ubuntu1) ... 897s Setting up python3-markupsafe (2.1.5-1build1) ... 897s Processing triggers for man-db (2.12.0-3) ... 898s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 898s Reading package lists... 898s Building dependency tree... 898s Reading state information... 899s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 899s sh: Attempting to set up Debian/Ubuntu apt sources automatically 899s sh: Distribution appears to be Ubuntu 901s Reading package lists... 901s Building dependency tree... 901s Reading state information... 901s eatmydata is already the newest version (131-1). 901s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 901s Reading package lists... 901s Building dependency tree... 901s Reading state information... 902s dbus is already the newest version (1.14.10-4ubuntu1). 902s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 902s Reading package lists... 902s Building dependency tree... 902s Reading state information... 902s rng-tools-debian is already the newest version (2.4). 902s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 903s Reading package lists... 903s Building dependency tree... 903s Reading state information... 903s The following packages will be REMOVED: 903s cloud-init* python3-configobj* python3-debconf* 903s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 903s After this operation, 3256 kB disk space will be freed. 903s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 903s Removing cloud-init (24.1.2-0ubuntu1) ... 904s Removing python3-configobj (5.0.8-3) ... 904s Removing python3-debconf (1.5.86) ... 904s Processing triggers for man-db (2.12.0-3) ... 905s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 905s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 905s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 905s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 905s invoke-rc.d: policy-rc.d denied execution of try-restart. 905s Reading package lists... 906s Building dependency tree... 906s Reading state information... 906s linux-generic is already the newest version (6.8.0-11.11+1). 906s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 906s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 906s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 906s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 909s Reading package lists... 909s Reading package lists... 909s Building dependency tree... 909s Reading state information... 910s Calculating upgrade... 910s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 910s Reading package lists... 910s Building dependency tree... 910s Reading state information... 911s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 911s autopkgtest [03:03:18]: rebooting testbed after setup commands that affected boot 1128s autopkgtest [03:06:55]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 1129s autopkgtest [03:06:56]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-gviz 1129s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-gviz 1.46.1+dfsg-1 (dsc) [2484 B] 1129s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-gviz 1.46.1+dfsg-1 (tar) [3824 kB] 1129s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-gviz 1.46.1+dfsg-1 (diff) [7136 B] 1130s gpgv: Signature made Fri Dec 8 14:53:02 2023 UTC 1130s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 1130s gpgv: issuer "tille@debian.org" 1130s gpgv: Can't check signature: No public key 1130s dpkg-source: warning: cannot verify inline signature for ./r-bioc-gviz_1.46.1+dfsg-1.dsc: no acceptable signature found 1130s autopkgtest [03:06:57]: testing package r-bioc-gviz version 1.46.1+dfsg-1 1130s autopkgtest [03:06:57]: build not needed 1134s autopkgtest [03:07:01]: test pkg-r-autopkgtest: preparing testbed 1140s Note, using file '/tmp/autopkgtest.uAnJXv/1-autopkgtest-satdep.dsc' to get the build dependencies 1140s Reading package lists... 1141s Building dependency tree... 1141s Reading state information... 1141s Starting pkgProblemResolver with broken count: 0 1141s Starting 2 pkgProblemResolver with broken count: 0 1141s Done 1142s The following NEW packages will be installed: 1142s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 1142s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 1142s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 1142s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 1142s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 1142s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 1142s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 1142s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 1142s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 1142s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 1142s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 1142s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 1142s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 1142s libjs-highlight.js libjs-jquery libjs-jquery-datatables 1142s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 1142s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 1142s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 1142s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 1142s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 1142s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 1142s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 1142s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 1142s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 1142s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 1142s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 1142s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 1142s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 1142s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 1142s r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 1142s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 1142s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase 1142s r-bioc-bsgenome r-bioc-delayedarray r-bioc-ensembldb r-bioc-genomeinfodb 1142s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 1142s r-bioc-genomicranges r-bioc-gviz r-bioc-iranges r-bioc-keggrest 1142s r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools 1142s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 1142s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 1142s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 1142s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 1142s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-bslib 1142s r-cran-cachem r-cran-callr r-cran-checkmate r-cran-chron r-cran-cli 1142s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 1142s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi 1142s r-cran-dbplyr r-cran-deldir r-cran-desc r-cran-dichromat r-cran-diffobj 1142s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 1142s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 1142s r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger 1142s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 1142s r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-hms 1142s r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv 1142s r-cran-httr r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jquerylib 1142s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 1142s r-cran-lattice r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle 1142s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 1142s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 1142s r-cran-nnet r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 1142s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 1142s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 1142s r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 1142s r-cran-rcppeigen r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rjson 1142s r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite 1142s r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 1142s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 1142s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 1142s r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-waldo 1142s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 1142s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 1142s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 1142s zlib1g-dev 1142s 0 upgraded, 331 newly installed, 0 to remove and 0 not upgraded. 1142s Need to get 488 MB of archives. 1142s After this operation, 1443 MB of additional disk space will be used. 1142s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 1142s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 1142s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 1142s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 1142s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 1142s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 1142s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 1142s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 1142s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 1142s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 1142s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 1142s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 1142s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 1142s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 1142s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 1142s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 1142s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 1142s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 1142s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 1142s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 1142s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 1142s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 1142s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 1142s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 1142s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 1142s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 1142s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 1142s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 1142s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 1142s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 1142s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 1142s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 1142s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 1142s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 1142s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 1142s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 1142s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 1142s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 1142s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 1142s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 1142s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 1142s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 1142s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 1143s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 1143s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 1143s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 1143s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 1143s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 1143s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 1143s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 1143s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 1143s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 1143s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 1143s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 1143s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 1143s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 1143s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 1143s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 1143s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 1143s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 1143s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 1143s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 1143s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 1143s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 1143s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 1143s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 1143s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 1143s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 1143s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 1143s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 1143s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 1143s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 1143s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 1143s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 1143s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 1143s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 1143s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 1143s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 1143s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 1143s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 1143s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 1143s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 1143s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 1143s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1143s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 1143s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 1143s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 1143s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 1143s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 1143s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 1143s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 1143s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 1143s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 1143s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 1143s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 1143s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 1143s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 1143s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 1143s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 1143s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 1143s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 1143s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 1143s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 1143s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 1143s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 1143s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 1143s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 1143s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 1143s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 1143s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 1143s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 1143s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 1143s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 1143s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 1143s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 1143s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 1143s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 1143s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 1143s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 1143s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 1143s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 1143s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 1143s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 1143s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 1143s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 1143s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 1143s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 1143s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 1143s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 1143s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 1143s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 1143s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 1143s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 1143s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 1143s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 1143s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 1143s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 1143s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 1144s Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 1144s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 1144s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 1144s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 1144s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 1144s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 1144s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 1144s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 1144s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 1144s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 1144s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 1144s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 1144s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 1144s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 1144s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 1144s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 1144s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 1144s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 1144s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 1144s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 1144s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 1144s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 1144s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 1144s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 1144s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 1144s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 1144s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 1144s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 1144s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 1144s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 1144s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 1144s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 1144s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 1144s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 1144s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 1144s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 1144s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 1144s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 1144s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 1144s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 1144s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 1144s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 1144s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 1144s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 1144s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 1144s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 1144s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 1144s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 1144s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 1145s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 1145s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 1145s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 1145s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 1145s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 1145s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 1145s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 1145s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 1145s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 1145s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 1145s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 1145s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 1145s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 1145s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 1145s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 1145s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 1145s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 1145s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 1145s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 1145s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 1145s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 1145s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 1145s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 1145s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 1145s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 1145s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 1145s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 1145s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 1145s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 1145s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 1145s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 1145s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 1145s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 1145s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 1145s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 1145s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 1145s Get:224 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 1145s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 1145s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 1145s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 1145s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 1145s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 1145s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 1145s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 1145s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 1145s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 1145s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 1145s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 1145s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 1145s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 1145s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 1145s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 1145s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 1145s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 1145s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 1145s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 1145s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 1145s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 1145s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 1145s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 1145s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 1145s Get:249 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 1145s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 1145s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 1145s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 1145s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 1146s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 1146s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 1146s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 1146s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 1146s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 1146s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 1146s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 1146s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 1146s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 1146s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 1146s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 1146s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 1146s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 1146s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 1146s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 1146s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 1146s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 1146s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 1146s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 1146s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 1146s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 1146s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 1146s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cluster amd64 2.1.6-1 [554 kB] 1146s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 1146s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rpart amd64 4.1.23-1 [661 kB] 1146s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nnet amd64 7.3-19-2 [112 kB] 1146s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-foreign amd64 0.8.86-1 [242 kB] 1146s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 1146s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-data.table amd64 1.14.10+dfsg-1 [1837 kB] 1146s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-backports amd64 1.4.1-1 [101 kB] 1146s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-checkmate amd64 2.3.1-1 [713 kB] 1146s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 1146s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rstudioapi all 0.15.0-1 [277 kB] 1146s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltable all 2.4.2-1 [381 kB] 1146s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 1146s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 1146s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-chron amd64 2.3-61-2 [186 kB] 1146s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 1146s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-deldir amd64 2.0-4-1 [270 kB] 1146s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppeigen amd64 0.3.3.9.4-1 [1189 kB] 1146s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 1146s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 1146s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-acepack amd64 1.4.2-1 [61.3 kB] 1146s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hmisc amd64 5.1-1-1 [3491 kB] 1146s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 1146s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 1146s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 1146s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 1146s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 1146s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 1146s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 1146s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 1146s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 1146s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 1146s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 1146s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 1146s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 1146s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 1146s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 1146s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 1146s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-variantannotation amd64 1.48.1-1 [3527 kB] 1146s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 1146s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 1147s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biovizbase amd64 1.50.0-1 [2665 kB] 1147s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-gviz all 1.46.1+dfsg-1 [4855 kB] 1147s Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 1147s Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 1147s Get:321 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 1147s Get:322 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 1147s Get:323 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 1147s Get:324 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 1147s Get:325 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 1147s Get:326 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 1147s Get:327 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 1147s Get:328 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 1147s Get:329 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 1147s Get:330 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 1147s Get:331 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 1147s Preconfiguring packages ... 1148s Fetched 488 MB in 5s (104 MB/s) 1148s Selecting previously unselected package libc-dev-bin. 1148s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 1148s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 1148s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 1148s Selecting previously unselected package linux-libc-dev:amd64. 1148s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 1148s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 1148s Selecting previously unselected package libcrypt-dev:amd64. 1148s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 1148s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 1148s Selecting previously unselected package libtirpc-dev:amd64. 1148s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 1148s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 1148s Selecting previously unselected package libnsl-dev:amd64. 1148s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 1148s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 1148s Selecting previously unselected package rpcsvc-proto. 1148s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 1148s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 1148s Selecting previously unselected package libc6-dev:amd64. 1148s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 1148s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 1148s Selecting previously unselected package libisl23:amd64. 1148s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 1148s Unpacking libisl23:amd64 (0.26-3) ... 1148s Selecting previously unselected package libmpc3:amd64. 1148s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 1148s Unpacking libmpc3:amd64 (1.3.1-1) ... 1148s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 1148s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1148s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1149s Selecting previously unselected package cpp-13. 1149s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 1149s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 1149s Selecting previously unselected package cpp-x86-64-linux-gnu. 1149s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1149s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1149s Selecting previously unselected package cpp. 1149s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 1149s Unpacking cpp (4:13.2.0-7ubuntu1) ... 1149s Selecting previously unselected package libcc1-0:amd64. 1149s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 1149s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 1149s Selecting previously unselected package libgomp1:amd64. 1149s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 1149s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 1149s Selecting previously unselected package libitm1:amd64. 1149s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 1149s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 1149s Selecting previously unselected package libatomic1:amd64. 1149s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 1149s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 1149s Selecting previously unselected package libasan8:amd64. 1149s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 1149s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 1149s 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fonts-mathjax. 1151s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 1151s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 1151s Selecting previously unselected package libgfortran5:amd64. 1151s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 1151s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 1151s Selecting previously unselected package libgfortran-13-dev:amd64. 1151s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 1151s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 1151s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 1151s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1151s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1151s Selecting previously unselected package gfortran-13. 1151s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 1151s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 1151s 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package liblatex-tounicode-perl. 1152s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 1152s Unpacking liblatex-tounicode-perl (0.54-2) ... 1152s Selecting previously unselected package libbibtex-parser-perl. 1152s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 1152s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 1152s Selecting previously unselected package libblas3:amd64. 1152s Preparing to unpack .../055-libblas3_3.12.0-3_amd64.deb ... 1152s Unpacking libblas3:amd64 (3.12.0-3) ... 1152s Selecting previously unselected package libblas-dev:amd64. 1152s Preparing to unpack .../056-libblas-dev_3.12.0-3_amd64.deb ... 1152s Unpacking libblas-dev:amd64 (3.12.0-3) ... 1152s Selecting previously unselected package libboost1.83-dev:amd64. 1152s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 1152s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 1154s Selecting previously unselected package 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package libsharpyuv0:amd64. 1157s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_amd64.deb ... 1157s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 1157s Selecting previously unselected package libsm6:amd64. 1157s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_amd64.deb ... 1157s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 1157s Selecting previously unselected package libsynctex2:amd64. 1157s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_amd64.deb ... 1157s Unpacking libsynctex2:amd64 (2023.20230311.66589-9) ... 1157s Selecting previously unselected package libtcl8.6:amd64. 1157s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 1157s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 1157s Selecting previously unselected package libteckit0:amd64. 1157s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_amd64.deb ... 1157s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 1157s Selecting previously unselected package libtexlua53-5:amd64. 1157s Preparing 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Unpacking unzip (6.0-28ubuntu3) ... 1159s Selecting previously unselected package xdg-utils. 1159s Preparing to unpack .../143-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 1159s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 1159s Selecting previously unselected package r-base-core. 1159s Preparing to unpack .../144-r-base-core_4.3.2-1build1_amd64.deb ... 1159s Unpacking r-base-core (4.3.2-1build1) ... 1160s Selecting previously unselected package liblzma-dev:amd64. 1160s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_amd64.deb ... 1160s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 1160s Selecting previously unselected package r-base-dev. 1160s Preparing to unpack .../146-r-base-dev_4.3.2-1build1_all.deb ... 1160s Unpacking r-base-dev (4.3.2-1build1) ... 1160s Selecting previously unselected package pkg-r-autopkgtest. 1160s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 1160s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 1160s Selecting previously unselected package r-bioc-biocgenerics. 1160s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 1160s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 1160s Selecting previously unselected package r-bioc-biobase. 1160s Preparing to unpack .../149-r-bioc-biobase_2.62.0-1_amd64.deb ... 1160s Unpacking r-bioc-biobase (2.62.0-1) ... 1160s Selecting previously unselected package r-bioc-s4vectors. 1160s Preparing to unpack .../150-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 1160s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 1160s Selecting previously unselected package r-bioc-iranges. 1160s Preparing to unpack .../151-r-bioc-iranges_2.36.0-1_amd64.deb ... 1160s Unpacking r-bioc-iranges (2.36.0-1) ... 1160s Selecting previously unselected package r-cran-dbi. 1160s Preparing to unpack .../152-r-cran-dbi_1.2.2-1_all.deb ... 1160s Unpacking r-cran-dbi (1.2.2-1) ... 1160s Selecting previously unselected package r-cran-bit. 1160s Preparing to unpack .../153-r-cran-bit_4.0.5-1_amd64.deb ... 1160s Unpacking r-cran-bit (4.0.5-1) ... 1160s Selecting previously unselected package r-cran-bit64. 1160s Preparing to unpack .../154-r-cran-bit64_4.0.5-1_amd64.deb ... 1160s Unpacking r-cran-bit64 (4.0.5-1) ... 1160s Selecting previously unselected package r-cran-rlang. 1160s Preparing to unpack .../155-r-cran-rlang_1.1.3-1_amd64.deb ... 1160s Unpacking r-cran-rlang (1.1.3-1) ... 1160s Selecting previously unselected package r-cran-cli. 1160s Preparing to unpack .../156-r-cran-cli_3.6.2-1_amd64.deb ... 1160s Unpacking r-cran-cli (3.6.2-1) ... 1160s Selecting previously unselected package r-cran-glue. 1160s Preparing to unpack .../157-r-cran-glue_1.7.0-1_amd64.deb ... 1160s Unpacking r-cran-glue (1.7.0-1) ... 1160s Selecting previously unselected package r-cran-lifecycle. 1160s Preparing to unpack .../158-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 1160s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 1160s Selecting previously unselected package r-cran-vctrs. 1160s Preparing to unpack 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previously unselected package r-cran-plogr. 1161s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build1_all.deb ... 1161s Unpacking r-cran-plogr (0.2.0-3build1) ... 1161s Selecting previously unselected package r-cran-cpp11. 1161s Preparing to unpack .../166-r-cran-cpp11_0.4.7-1_all.deb ... 1161s Unpacking r-cran-cpp11 (0.4.7-1) ... 1161s Selecting previously unselected package r-cran-rsqlite. 1161s Preparing to unpack .../167-r-cran-rsqlite_2.3.4-1_amd64.deb ... 1161s Unpacking r-cran-rsqlite (2.3.4-1) ... 1161s Selecting previously unselected package r-cran-curl. 1161s Preparing to unpack .../168-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 1161s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 1161s Selecting previously unselected package r-cran-jsonlite. 1161s Preparing to unpack .../169-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 1161s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 1161s Selecting previously unselected package r-cran-mime. 1161s Preparing to unpack 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r-cran-png. 1161s Preparing to unpack .../176-r-cran-png_0.1-8-1_amd64.deb ... 1161s Unpacking r-cran-png (0.1-8-1) ... 1161s Selecting previously unselected package r-bioc-zlibbioc. 1161s Preparing to unpack .../177-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 1161s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 1161s Selecting previously unselected package r-bioc-xvector. 1161s Preparing to unpack .../178-r-bioc-xvector_0.42.0-1_amd64.deb ... 1161s Unpacking r-bioc-xvector (0.42.0-1) ... 1161s Selecting previously unselected package r-cran-bitops. 1161s Preparing to unpack .../179-r-cran-bitops_1.0-7-1_amd64.deb ... 1161s Unpacking r-cran-bitops (1.0-7-1) ... 1161s Selecting previously unselected package r-cran-rcurl. 1161s Preparing to unpack .../180-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 1161s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 1161s Selecting previously unselected package r-bioc-genomeinfodbdata. 1161s Preparing to unpack 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unselected package r-cran-tidyselect. 1162s Preparing to unpack .../197-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 1162s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 1162s Selecting previously unselected package r-cran-dplyr. 1162s Preparing to unpack .../198-r-cran-dplyr_1.1.4-1_amd64.deb ... 1162s Unpacking r-cran-dplyr (1.1.4-1) ... 1162s Selecting previously unselected package r-cran-purrr. 1162s Preparing to unpack .../199-r-cran-purrr_1.0.2-1_amd64.deb ... 1162s Unpacking r-cran-purrr (1.0.2-1) ... 1163s Selecting previously unselected package r-cran-stringi. 1163s Preparing to unpack .../200-r-cran-stringi_1.8.3-1_amd64.deb ... 1163s Unpacking r-cran-stringi (1.8.3-1) ... 1163s Selecting previously unselected package r-cran-stringr. 1163s Preparing to unpack .../201-r-cran-stringr_1.5.1-1_all.deb ... 1163s Unpacking r-cran-stringr (1.5.1-1) ... 1163s Selecting previously unselected package r-cran-tidyr. 1163s Preparing to unpack .../202-r-cran-tidyr_1.3.1-1_amd64.deb ... 1163s Unpacking r-cran-tidyr (1.3.1-1) ... 1163s Selecting previously unselected package r-cran-dbplyr. 1163s Preparing to unpack .../203-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 1163s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 1163s Selecting previously unselected package r-cran-filelock. 1163s Preparing to unpack .../204-r-cran-filelock_1.0.3-1_amd64.deb ... 1163s Unpacking r-cran-filelock (1.0.3-1) ... 1163s Selecting previously unselected package r-bioc-biocfilecache. 1163s Preparing to unpack .../205-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 1163s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 1163s Selecting previously unselected package r-bioc-biocio. 1163s Preparing to unpack .../206-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 1163s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 1163s Selecting previously unselected package r-cran-formatr. 1163s Preparing to unpack .../207-r-cran-formatr_1.14-1_all.deb ... 1163s Unpacking r-cran-formatr (1.14-1) ... 1163s Selecting previously unselected package r-cran-lambda.r. 1163s Preparing to unpack .../208-r-cran-lambda.r_1.2.4-2build1_all.deb ... 1163s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 1163s Selecting previously unselected package r-cran-futile.options. 1163s Preparing to unpack .../209-r-cran-futile.options_1.0.1-3build1_all.deb ... 1163s Unpacking r-cran-futile.options (1.0.1-3build1) ... 1163s Selecting previously unselected package r-cran-futile.logger. 1163s Preparing to unpack .../210-r-cran-futile.logger_1.4.3-4build1_all.deb ... 1163s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 1163s Selecting previously unselected package r-cran-snow. 1163s Preparing to unpack .../211-r-cran-snow_1%3a0.4.4-2_all.deb ... 1163s Unpacking r-cran-snow (1:0.4.4-2) ... 1163s Selecting previously unselected package r-cran-codetools. 1163s Preparing to unpack .../212-r-cran-codetools_0.2-19-1_all.deb ... 1163s Unpacking r-cran-codetools (0.2-19-1) ... 1163s Selecting previously unselected package r-cran-bh. 1163s Preparing to unpack .../213-r-cran-bh_1.84.0-1_all.deb ... 1163s Unpacking r-cran-bh (1.84.0-1) ... 1163s Selecting previously unselected package r-bioc-biocparallel. 1163s Preparing to unpack .../214-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 1163s Unpacking r-bioc-biocparallel (1.36.0-1) ... 1163s Selecting previously unselected package r-cran-base64enc. 1163s Preparing to unpack .../215-r-cran-base64enc_0.1-3-3_amd64.deb ... 1163s Unpacking r-cran-base64enc (0.1-3-3) ... 1163s Selecting previously unselected package r-cran-digest. 1163s Preparing to unpack .../216-r-cran-digest_0.6.34-1_amd64.deb ... 1163s Unpacking r-cran-digest (0.6.34-1) ... 1163s Selecting previously unselected package r-cran-ellipsis. 1163s Preparing to unpack .../217-r-cran-ellipsis_0.3.2-2_amd64.deb ... 1163s Unpacking r-cran-ellipsis (0.3.2-2) ... 1163s Selecting previously unselected package r-cran-htmltools. 1163s Preparing to unpack .../218-r-cran-htmltools_0.5.7-1_amd64.deb ... 1163s Unpacking r-cran-htmltools (0.5.7-1) ... 1163s Selecting previously unselected package r-cran-evaluate. 1163s Preparing to unpack .../219-r-cran-evaluate_0.23-1_all.deb ... 1163s Unpacking r-cran-evaluate (0.23-1) ... 1163s Selecting previously unselected package r-cran-xfun. 1163s Preparing to unpack .../220-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 1163s Unpacking r-cran-xfun (0.41+dfsg-1) ... 1164s Selecting previously unselected package r-cran-highr. 1164s Preparing to unpack .../221-r-cran-highr_0.10+dfsg-1_all.deb ... 1164s Unpacking r-cran-highr (0.10+dfsg-1) ... 1164s Selecting previously unselected package r-cran-yaml. 1164s Preparing to unpack .../222-r-cran-yaml_2.3.8-1_amd64.deb ... 1164s Unpacking r-cran-yaml (2.3.8-1) ... 1164s Selecting previously unselected package libjs-mathjax. 1164s Preparing to unpack .../223-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 1164s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 1164s Selecting previously unselected package r-cran-knitr. 1165s Preparing to unpack .../224-r-cran-knitr_1.45+dfsg-1_all.deb ... 1165s Unpacking r-cran-knitr (1.45+dfsg-1) ... 1165s Selecting previously unselected package r-cran-jquerylib. 1165s Preparing to unpack .../225-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 1165s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 1165s Selecting previously unselected package r-cran-fs. 1165s Preparing to unpack .../226-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 1165s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 1165s Selecting previously unselected package r-cran-rappdirs. 1165s Preparing to unpack .../227-r-cran-rappdirs_0.3.3-1_amd64.deb ... 1165s Unpacking r-cran-rappdirs (0.3.3-1) ... 1165s Selecting previously unselected package r-cran-sass. 1165s Preparing to unpack .../228-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 1165s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 1165s Selecting previously unselected package r-cran-bslib. 1165s Preparing to unpack .../229-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 1165s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 1165s Selecting previously unselected package r-cran-fontawesome. 1165s Preparing to unpack .../230-r-cran-fontawesome_0.5.2-1_all.deb ... 1165s Unpacking r-cran-fontawesome (0.5.2-1) ... 1165s Selecting previously unselected package r-cran-tinytex. 1165s Preparing to unpack .../231-r-cran-tinytex_0.49-1_all.deb ... 1165s Unpacking r-cran-tinytex (0.49-1) ... 1165s Selecting previously unselected package libjs-modernizr. 1165s Preparing to unpack .../232-libjs-modernizr_2.6.2+ds1-5_all.deb ... 1165s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 1165s Selecting previously unselected package r-cran-littler. 1165s Preparing to unpack .../233-r-cran-littler_0.3.19-1_amd64.deb ... 1165s Unpacking r-cran-littler (0.3.19-1) ... 1165s Selecting previously unselected package r-cran-pkgkitten. 1165s Preparing to unpack .../234-r-cran-pkgkitten_0.2.3-1_all.deb ... 1165s Unpacking r-cran-pkgkitten (0.2.3-1) ... 1165s Selecting previously unselected package r-cran-rcpp. 1165s Preparing to unpack .../235-r-cran-rcpp_1.0.12-1_amd64.deb ... 1165s Unpacking r-cran-rcpp (1.0.12-1) ... 1165s Selecting previously unselected package r-cran-later. 1165s Preparing to unpack .../236-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 1165s Unpacking r-cran-later (1.3.2+dfsg-1) ... 1165s Selecting previously unselected package r-cran-promises. 1165s Preparing to unpack .../237-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 1165s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 1165s Selecting previously unselected package r-cran-httpuv. 1165s Preparing to unpack .../238-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 1165s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 1165s Selecting previously unselected package r-cran-xtable. 1165s Preparing to unpack .../239-r-cran-xtable_1%3a1.8-4-2_all.deb ... 1165s Unpacking r-cran-xtable (1:1.8-4-2) ... 1165s Selecting previously unselected package r-cran-sourcetools. 1165s Preparing to unpack .../240-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 1165s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 1166s Selecting previously unselected package r-cran-commonmark. 1166s Preparing to unpack .../241-r-cran-commonmark_1.9.1-1_amd64.deb ... 1166s Unpacking r-cran-commonmark (1.9.1-1) ... 1166s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 1166s Preparing to unpack .../242-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 1166s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 1166s Selecting previously unselected package r-cran-shiny. 1166s Preparing to unpack .../243-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 1166s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 1166s Selecting previously unselected package r-cran-rmarkdown. 1166s Preparing to unpack .../244-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 1166s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 1166s Selecting previously unselected package r-cran-bookdown. 1166s Preparing to unpack .../245-r-cran-bookdown_0.37+dfsg-1_all.deb ... 1166s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 1166s Selecting previously unselected package r-cran-biocmanager. 1166s Preparing to unpack .../246-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 1166s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 1166s Selecting previously unselected package tex-common. 1166s Preparing to unpack .../247-tex-common_6.18_all.deb ... 1166s Unpacking tex-common (6.18) ... 1166s Selecting previously unselected package t1utils. 1166s Preparing to unpack .../248-t1utils_1.41-4build2_amd64.deb ... 1166s Unpacking t1utils (1.41-4build2) ... 1166s Selecting previously unselected package texlive-binaries. 1166s Preparing to unpack .../249-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 1166s Unpacking texlive-binaries (2023.20230311.66589-9) ... 1166s Selecting previously unselected package texlive-base. 1166s Preparing to unpack .../250-texlive-base_2023.20240207-1_all.deb ... 1166s Unpacking texlive-base (2023.20240207-1) ... 1168s Selecting previously unselected package texlive-latex-base. 1168s Preparing to unpack .../251-texlive-latex-base_2023.20240207-1_all.deb ... 1168s Unpacking texlive-latex-base (2023.20240207-1) ... 1168s Selecting previously unselected package texlive-bibtex-extra. 1168s Preparing to unpack .../252-texlive-bibtex-extra_2023.20240207-1_all.deb ... 1168s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 1172s Selecting previously unselected package r-bioc-biocstyle. 1172s Preparing to unpack .../253-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 1172s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 1172s Selecting previously unselected package r-cran-xml. 1172s Preparing to unpack .../254-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 1172s Unpacking r-cran-xml (3.99-0.16.1-1) ... 1172s Selecting previously unselected package r-cran-hms. 1172s Preparing to unpack .../255-r-cran-hms_1.1.3-1_all.deb ... 1172s Unpacking r-cran-hms (1.1.3-1) ... 1172s Selecting previously unselected package r-cran-prettyunits. 1172s Preparing to unpack .../256-r-cran-prettyunits_1.2.0-1_all.deb ... 1172s Unpacking r-cran-prettyunits (1.2.0-1) ... 1172s Selecting previously unselected package r-cran-progress. 1172s Preparing to unpack .../257-r-cran-progress_1.2.3-1_all.deb ... 1172s Unpacking r-cran-progress (1.2.3-1) ... 1172s Selecting previously unselected package r-cran-xml2. 1172s Preparing to unpack .../258-r-cran-xml2_1.3.6-1_amd64.deb ... 1172s Unpacking r-cran-xml2 (1.3.6-1) ... 1172s Selecting previously unselected package r-bioc-biomart. 1172s Preparing to unpack .../259-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 1172s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 1172s Selecting previously unselected package r-cran-farver. 1172s Preparing to unpack .../260-r-cran-farver_2.1.1-1_amd64.deb ... 1172s Unpacking r-cran-farver (2.1.1-1) ... 1172s Selecting previously unselected package r-cran-labeling. 1172s Preparing to unpack .../261-r-cran-labeling_0.4.3-1_all.deb ... 1172s Unpacking r-cran-labeling (0.4.3-1) ... 1172s Selecting previously unselected package r-cran-colorspace. 1172s Preparing to unpack .../262-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 1172s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 1172s Selecting previously unselected package r-cran-munsell. 1172s Preparing to unpack .../263-r-cran-munsell_0.5.0-2build1_all.deb ... 1172s Unpacking r-cran-munsell (0.5.0-2build1) ... 1172s Selecting previously unselected package r-cran-rcolorbrewer. 1172s Preparing to unpack .../264-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 1172s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 1172s Selecting previously unselected package r-cran-viridislite. 1172s Preparing to unpack .../265-r-cran-viridislite_0.4.2-2_all.deb ... 1172s Unpacking r-cran-viridislite (0.4.2-2) ... 1173s Selecting previously unselected package r-cran-scales. 1173s Preparing to unpack .../266-r-cran-scales_1.3.0-1_all.deb ... 1173s Unpacking r-cran-scales (1.3.0-1) ... 1173s Selecting previously unselected package r-cran-gtable. 1173s Preparing to unpack .../267-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 1173s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 1173s Selecting previously unselected package r-cran-isoband. 1173s Preparing to unpack .../268-r-cran-isoband_0.2.7-1_amd64.deb ... 1173s Unpacking r-cran-isoband (0.2.7-1) ... 1173s Selecting previously unselected package r-cran-mass. 1173s Preparing to unpack .../269-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 1173s Unpacking r-cran-mass (7.3-60.0.1-1) ... 1173s Selecting previously unselected package r-cran-lattice. 1173s Preparing to unpack .../270-r-cran-lattice_0.22-5-1_amd64.deb ... 1173s Unpacking r-cran-lattice (0.22-5-1) ... 1173s Selecting previously unselected package r-cran-nlme. 1173s Preparing to unpack .../271-r-cran-nlme_3.1.164-1_amd64.deb ... 1173s Unpacking r-cran-nlme (3.1.164-1) ... 1173s Selecting previously unselected package r-cran-matrix. 1173s Preparing to unpack .../272-r-cran-matrix_1.6-5-1_amd64.deb ... 1173s Unpacking r-cran-matrix (1.6-5-1) ... 1173s Selecting previously unselected package r-cran-mgcv. 1173s Preparing to unpack .../273-r-cran-mgcv_1.9-1-1_amd64.deb ... 1173s Unpacking r-cran-mgcv (1.9-1-1) ... 1173s Selecting previously unselected package r-cran-ggplot2. 1173s Preparing to unpack .../274-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 1173s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 1173s Selecting previously unselected package r-cran-cluster. 1173s Preparing to unpack .../275-r-cran-cluster_2.1.6-1_amd64.deb ... 1173s Unpacking r-cran-cluster (2.1.6-1) ... 1173s Selecting previously unselected package r-cran-survival. 1173s Preparing to unpack .../276-r-cran-survival_3.5-8-1_amd64.deb ... 1173s Unpacking r-cran-survival (3.5-8-1) ... 1173s Selecting previously unselected package r-cran-rpart. 1173s Preparing to unpack .../277-r-cran-rpart_4.1.23-1_amd64.deb ... 1173s Unpacking r-cran-rpart (4.1.23-1) ... 1173s Selecting previously unselected package r-cran-nnet. 1173s Preparing to unpack .../278-r-cran-nnet_7.3-19-2_amd64.deb ... 1173s Unpacking r-cran-nnet (7.3-19-2) ... 1174s Selecting previously unselected package r-cran-foreign. 1174s Preparing to unpack .../279-r-cran-foreign_0.8.86-1_amd64.deb ... 1174s Unpacking r-cran-foreign (0.8.86-1) ... 1174s Selecting previously unselected package r-cran-gridextra. 1174s Preparing to unpack .../280-r-cran-gridextra_2.3-3build1_all.deb ... 1174s Unpacking r-cran-gridextra (2.3-3build1) ... 1174s Selecting previously unselected package r-cran-data.table. 1174s Preparing to unpack .../281-r-cran-data.table_1.14.10+dfsg-1_amd64.deb ... 1174s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 1174s Selecting previously unselected package r-cran-backports. 1174s Preparing to unpack .../282-r-cran-backports_1.4.1-1_amd64.deb ... 1174s Unpacking r-cran-backports (1.4.1-1) ... 1174s Selecting previously unselected package r-cran-checkmate. 1174s Preparing to unpack .../283-r-cran-checkmate_2.3.1-1_amd64.deb ... 1174s Unpacking r-cran-checkmate (2.3.1-1) ... 1174s Selecting previously unselected package r-cran-htmlwidgets. 1174s Preparing to unpack .../284-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 1174s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 1174s Selecting previously unselected package r-cran-rstudioapi. 1174s Preparing to unpack .../285-r-cran-rstudioapi_0.15.0-1_all.deb ... 1174s Unpacking r-cran-rstudioapi (0.15.0-1) ... 1174s Selecting previously unselected package r-cran-htmltable. 1174s Preparing to unpack .../286-r-cran-htmltable_2.4.2-1_all.deb ... 1174s Unpacking r-cran-htmltable (2.4.2-1) ... 1174s Selecting previously unselected package r-cran-viridis. 1174s Preparing to unpack .../287-r-cran-viridis_0.6.5-1_all.deb ... 1174s Unpacking r-cran-viridis (0.6.5-1) ... 1174s Selecting previously unselected package r-cran-formula. 1174s Preparing to unpack .../288-r-cran-formula_1.2-5-1_all.deb ... 1174s Unpacking r-cran-formula (1.2-5-1) ... 1174s Selecting previously unselected package r-cran-chron. 1174s Preparing to unpack .../289-r-cran-chron_2.3-61-2_amd64.deb ... 1174s Unpacking r-cran-chron (2.3-61-2) ... 1174s Selecting previously unselected package r-cran-jpeg. 1174s Preparing to unpack .../290-r-cran-jpeg_0.1-10-1_amd64.deb ... 1174s Unpacking r-cran-jpeg (0.1-10-1) ... 1174s Selecting previously unselected package r-cran-deldir. 1174s Preparing to unpack .../291-r-cran-deldir_2.0-4-1_amd64.deb ... 1174s Unpacking r-cran-deldir (2.0-4-1) ... 1174s Selecting previously unselected package r-cran-rcppeigen. 1174s Preparing to unpack .../292-r-cran-rcppeigen_0.3.3.9.4-1_amd64.deb ... 1174s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 1174s Selecting previously unselected package r-cran-interp. 1174s Preparing to unpack .../293-r-cran-interp_1.1-6-1_amd64.deb ... 1174s Unpacking r-cran-interp (1.1-6-1) ... 1175s Selecting previously unselected package r-cran-latticeextra. 1175s Preparing to unpack .../294-r-cran-latticeextra_0.6-30-1_all.deb ... 1175s Unpacking r-cran-latticeextra (0.6-30-1) ... 1175s Selecting previously unselected package r-cran-acepack. 1175s Preparing to unpack .../295-r-cran-acepack_1.4.2-1_amd64.deb ... 1175s Unpacking r-cran-acepack (1.4.2-1) ... 1175s Selecting previously unselected package r-cran-hmisc. 1175s Preparing to unpack .../296-r-cran-hmisc_5.1-1-1_amd64.deb ... 1175s Unpacking r-cran-hmisc (5.1-1-1) ... 1175s Selecting previously unselected package r-cran-dichromat. 1175s Preparing to unpack .../297-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 1175s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 1175s Selecting previously unselected package r-cran-matrixstats. 1175s Preparing to unpack .../298-r-cran-matrixstats_1.2.0-1_amd64.deb ... 1175s Unpacking r-cran-matrixstats (1.2.0-1) ... 1175s Selecting previously unselected package r-bioc-matrixgenerics. 1175s Preparing to unpack .../299-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 1175s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 1175s Selecting previously unselected package r-cran-abind. 1175s Preparing to unpack .../300-r-cran-abind_1.4-5-2_all.deb ... 1175s Unpacking r-cran-abind (1.4-5-2) ... 1175s Selecting previously unselected package r-bioc-s4arrays. 1175s Preparing to unpack .../301-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 1175s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 1175s Selecting previously unselected package r-bioc-sparsearray. 1175s Preparing to unpack .../302-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 1175s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 1175s Selecting previously unselected package r-bioc-delayedarray. 1175s Preparing to unpack .../303-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 1175s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 1175s Selecting previously unselected package r-bioc-summarizedexperiment. 1175s Preparing to unpack .../304-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 1175s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 1175s Selecting previously unselected package r-bioc-rhtslib. 1175s Preparing to unpack .../305-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 1175s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 1175s Selecting previously unselected package r-bioc-rsamtools. 1175s Preparing to unpack .../306-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 1175s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 1175s Selecting previously unselected package r-bioc-genomicalignments. 1175s Preparing to unpack .../307-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 1175s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 1175s Selecting previously unselected package r-cran-rjson. 1175s Preparing to unpack .../308-r-cran-rjson_0.2.21-1_amd64.deb ... 1175s Unpacking r-cran-rjson (0.2.21-1) ... 1175s Selecting previously unselected package r-cran-restfulr. 1175s Preparing to unpack .../309-r-cran-restfulr_0.0.15-1_amd64.deb ... 1175s Unpacking r-cran-restfulr (0.0.15-1) ... 1176s Selecting previously unselected package r-bioc-rtracklayer. 1176s 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to provide /usr/bin/f77 (f77) in auto mode 1183s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 1183s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 1183s Setting up r-cran-bitops (1.0-7-1) ... 1183s Setting up r-cran-rprojroot (2.0.4-1) ... 1183s Setting up r-cran-bit64 (4.0.5-1) ... 1183s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 1183s Setting up r-cran-dichromat (1:2.0-0.1-1) ... 1183s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 1183s Setting up r-cran-deldir (2.0-4-1) ... 1183s Setting up r-cran-askpass (1.2.0-1) ... 1183s Setting up r-cran-fastmap (1.1.1-1) ... 1183s Setting up r-cran-png (0.1-8-1) ... 1183s Setting up r-bioc-biobase (2.62.0-1) ... 1183s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 1183s Setting up r-cran-rstudioapi (0.15.0-1) ... 1183s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 1183s Setting up r-cran-utf8 (1.2.4-1) ... 1183s 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(2.10.1+dfsg-1) ... 1183s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 1183s Setting up r-bioc-annotationdbi (1.64.1-1) ... 1183s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 1183s Setting up r-cran-testthat (3.2.1-1) ... 1183s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 1183s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 1183s Setting up r-bioc-genomicalignments (1.38.2-1) ... 1183s Setting up r-cran-bookdown (0.37+dfsg-1) ... 1183s Setting up r-bioc-rtracklayer (1.62.0-1) ... 1183s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 1183s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 1183s Setting up r-bioc-bsgenome (1.70.2-1) ... 1183s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 1183s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 1183s Setting up r-bioc-variantannotation (1.48.1-1) ... 1183s Setting up r-cran-htmltable (2.4.2-1) ... 1183s Setting up r-cran-hmisc (5.1-1-1) ... 1183s Setting up r-bioc-biovizbase (1.50.0-1) ... 1183s Setting up r-bioc-gviz (1.46.1+dfsg-1) ... 1183s Processing triggers for libc-bin (2.39-0ubuntu2) ... 1183s Processing triggers for man-db (2.12.0-3) ... 1184s Processing triggers for install-info (7.1-3) ... 1185s Processing triggers for tex-common (6.18) ... 1185s Running updmap-sys. This may take some time... done. 1185s Running mktexlsr /var/lib/texmf ... done. 1185s Building format(s) --all. 1218s This may take some time... done. 1227s Reading package lists... 1227s Building dependency tree... 1227s Reading state information... 1228s Starting pkgProblemResolver with broken count: 0 1228s Starting 2 pkgProblemResolver with broken count: 0 1228s Done 1228s The following NEW packages will be installed: 1228s autopkgtest-satdep 1228s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 1228s Need to get 0 B/696 B of archives. 1228s After this operation, 0 B of additional disk space will be used. 1228s Get:1 /tmp/autopkgtest.uAnJXv/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 1229s Selecting previously unselected package autopkgtest-satdep. 1229s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 126178 files and directories currently installed.) 1229s Preparing to unpack .../2-autopkgtest-satdep.deb ... 1229s Unpacking autopkgtest-satdep (0) ... 1229s Setting up autopkgtest-satdep (0) ... 1231s (Reading database ... 126178 files and directories currently installed.) 1231s Removing autopkgtest-satdep (0) ... 1231s autopkgtest [03:08:38]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 1231s autopkgtest [03:08:38]: test pkg-r-autopkgtest: [----------------------- 1231s Test: Try to load the R library Gviz 1231s 1231s R version 4.3.2 (2023-10-31) -- "Eye Holes" 1231s Copyright (C) 2023 The R Foundation for Statistical Computing 1231s Platform: x86_64-pc-linux-gnu (64-bit) 1231s 1231s R is free software and comes with ABSOLUTELY NO WARRANTY. 1231s You are welcome to redistribute it under certain conditions. 1231s Type 'license()' or 'licence()' for distribution details. 1231s 1231s R is a collaborative project with many contributors. 1231s Type 'contributors()' for more information and 1231s 'citation()' on how to cite R or R packages in publications. 1231s 1231s Type 'demo()' for some demos, 'help()' for on-line help, or 1231s 'help.start()' for an HTML browser interface to help. 1231s Type 'q()' to quit R. 1231s 1231s > library('Gviz') 1231s Loading required package: S4Vectors 1231s Loading required package: stats4 1231s Loading required package: BiocGenerics 1231s 1231s Attaching package: ‘BiocGenerics’ 1231s 1231s The following objects are masked from ‘package:stats’: 1231s 1231s IQR, mad, sd, var, xtabs 1231s 1231s The following objects are masked from ‘package:base’: 1231s 1231s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 1231s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 1231s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 1231s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 1231s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 1231s table, tapply, union, unique, unsplit, which.max, which.min 1231s 1232s 1232s Attaching package: ‘S4Vectors’ 1232s 1232s The following object is masked from ‘package:utils’: 1232s 1232s findMatches 1232s 1232s The following objects are masked from ‘package:base’: 1232s 1232s expand.grid, I, unname 1232s 1232s Loading required package: IRanges 1233s Loading required package: GenomicRanges 1233s Loading required package: GenomeInfoDb 1234s Loading required package: grid 1246s > 1246s > 1246s Other tests are currently unsupported! 1246s They will be progressively added. 1247s autopkgtest [03:08:54]: test pkg-r-autopkgtest: -----------------------] 1247s pkg-r-autopkgtest PASS 1247s autopkgtest [03:08:54]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1247s autopkgtest [03:08:54]: @@@@@@@@@@@@@@@@@@@@ summary 1247s pkg-r-autopkgtest PASS 1257s Creating nova instance adt-noble-i386-r-bioc-gviz-20240322-024807-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...