0s autopkgtest [13:05:09]: starting date and time: 2024-03-21 13:05:09+0000 0s autopkgtest [13:05:09]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [13:05:09]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.o3jitaet/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-bioc-rsamtools --apt-upgrade r-bioc-gviz --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-33.secgroup --name adt-noble-i386-r-bioc-gviz-20240321-130509-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 112s autopkgtest [13:07:01]: testbed dpkg architecture: amd64 112s autopkgtest [13:07:01]: testbed apt version: 2.7.12 112s autopkgtest [13:07:01]: test architecture: i386 112s autopkgtest [13:07:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 112s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 112s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 112s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3774 kB] 112s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 112s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 112s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [460 kB] 112s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [696 kB] 112s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 112s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 112s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 112s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 112s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1273 kB] 112s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4238 kB] 113s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 113s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 113s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 113s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 116s Fetched 11.3 MB in 2s (7241 kB/s) 116s Reading package lists... 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s Calculating upgrade... 119s The following packages will be upgraded: 119s debianutils linux-firmware 119s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s Need to get 476 MB of archives. 119s After this operation, 5724 kB of additional disk space will be used. 119s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.17 [89.8 kB] 119s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-firmware amd64 20240318.git3b128b60-0ubuntu1 [475 MB] 122s Fetched 476 MB in 3s (141 MB/s) 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 122s Preparing to unpack .../debianutils_5.17_amd64.deb ... 123s Unpacking debianutils (5.17) over (5.16) ... 123s Setting up debianutils (5.17) ... 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 123s Preparing to unpack .../linux-firmware_20240318.git3b128b60-0ubuntu1_amd64.deb ... 123s Unpacking linux-firmware (20240318.git3b128b60-0ubuntu1) over (20240202.git36777504-0ubuntu1) ... 126s Setting up linux-firmware (20240318.git3b128b60-0ubuntu1) ... 126s Processing triggers for man-db (2.12.0-3) ... 127s Processing triggers for initramfs-tools (0.142ubuntu20) ... 127s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 127s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 135s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 136s sh: Attempting to set up Debian/Ubuntu apt sources automatically 136s sh: Distribution appears to be Ubuntu 137s Reading package lists... 137s Building dependency tree... 137s Reading state information... 137s eatmydata is already the newest version (131-1). 137s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 137s Reading package lists... 137s Building dependency tree... 137s Reading state information... 138s dbus is already the newest version (1.14.10-4ubuntu1). 138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s rng-tools-debian is already the newest version (2.4). 138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 139s The following packages will be REMOVED: 139s cloud-init* python3-configobj* python3-debconf* 139s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 139s After this operation, 3252 kB disk space will be freed. 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 139s Removing cloud-init (24.1.1-0ubuntu1) ... 140s Removing python3-configobj (5.0.8-3) ... 140s Removing python3-debconf (1.5.86) ... 140s Processing triggers for man-db (2.12.0-3) ... 140s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71476 files and directories currently installed.) 140s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 141s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 141s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 141s invoke-rc.d: policy-rc.d denied execution of try-restart. 141s Reading package lists... 141s Building dependency tree... 141s Reading state information... 141s linux-generic is already the newest version (6.8.0-11.11+1). 141s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 142s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 142s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 142s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 144s Reading package lists... 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 144s Calculating upgrade... 144s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 144s Reading package lists... 145s Building dependency tree... 145s Reading state information... 145s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 145s autopkgtest [13:07:34]: rebooting testbed after setup commands that affected boot 164s autopkgtest [13:07:53]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 165s autopkgtest [13:07:54]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-gviz 165s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-gviz 1.46.1+dfsg-1 (dsc) [2484 B] 165s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-gviz 1.46.1+dfsg-1 (tar) [3824 kB] 165s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-gviz 1.46.1+dfsg-1 (diff) [7136 B] 166s gpgv: Signature made Fri Dec 8 14:53:02 2023 UTC 166s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 166s gpgv: issuer "tille@debian.org" 166s gpgv: Can't check signature: No public key 166s dpkg-source: warning: cannot verify inline signature for ./r-bioc-gviz_1.46.1+dfsg-1.dsc: no acceptable signature found 166s autopkgtest [13:07:55]: testing package r-bioc-gviz version 1.46.1+dfsg-1 167s autopkgtest [13:07:56]: build not needed 170s autopkgtest [13:07:59]: test pkg-r-autopkgtest: preparing testbed 175s Note, using file '/tmp/autopkgtest.mocJhI/1-autopkgtest-satdep.dsc' to get the build dependencies 175s Reading package lists... 176s Building dependency tree... 176s Reading state information... 176s Starting pkgProblemResolver with broken count: 0 176s Starting 2 pkgProblemResolver with broken count: 0 176s Done 176s The following NEW packages will be installed: 176s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 176s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 176s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 176s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 176s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 176s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 176s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 176s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 176s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 176s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 176s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 176s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 176s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 176s libjs-highlight.js libjs-jquery libjs-jquery-datatables 176s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 176s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 176s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 176s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 176s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 176s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 176s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 176s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 176s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 176s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 176s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 176s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 176s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 176s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 176s r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 176s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 176s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase 176s r-bioc-bsgenome r-bioc-delayedarray r-bioc-ensembldb r-bioc-genomeinfodb 176s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 176s r-bioc-genomicranges r-bioc-gviz r-bioc-iranges r-bioc-keggrest 176s r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools 176s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 176s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 176s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 176s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 176s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-bslib 176s r-cran-cachem r-cran-callr r-cran-checkmate r-cran-chron r-cran-cli 176s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 176s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi 176s r-cran-dbplyr r-cran-deldir r-cran-desc r-cran-dichromat r-cran-diffobj 176s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 176s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 176s r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger 176s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 176s r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-hms 176s r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv 176s r-cran-httr r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jquerylib 176s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 176s r-cran-lattice r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle 176s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 176s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 176s r-cran-nnet r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 176s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 176s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 176s r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 176s r-cran-rcppeigen r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rjson 176s r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite 176s r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 176s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 176s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 176s r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-waldo 176s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 176s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 176s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 176s zlib1g-dev 176s 0 upgraded, 331 newly installed, 0 to remove and 0 not upgraded. 176s Need to get 488 MB of archives. 176s After this operation, 1443 MB of additional disk space will be used. 176s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 176s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 176s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 176s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 176s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 176s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 176s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 176s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 176s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 176s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 176s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 176s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 176s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 176s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 176s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 176s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 176s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 176s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 177s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 177s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 177s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 177s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 177s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 177s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 177s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 177s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 177s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 177s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 177s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 177s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 177s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 177s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 177s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 177s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 177s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 177s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 177s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 177s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 177s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 177s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 177s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 177s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 177s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 177s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 177s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 177s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 177s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 177s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 177s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 177s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 177s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 177s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 177s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 177s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 177s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 177s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 177s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 177s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 177s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 177s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 177s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 177s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 177s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 177s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 177s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 177s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 177s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 177s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 177s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 177s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 177s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 177s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 177s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 177s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 177s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 177s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 177s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 177s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 177s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 177s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 177s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 177s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 177s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 177s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 177s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 177s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 177s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 177s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 177s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 177s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 177s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 177s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 177s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 177s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 177s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 177s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 177s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 177s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 177s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 177s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 177s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 177s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 177s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 177s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 177s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 177s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 177s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 177s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 177s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 177s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 177s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 177s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 177s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 177s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 177s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 177s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 177s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 177s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 177s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 177s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 177s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 177s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 177s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 177s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 177s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 177s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 177s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 177s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 177s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 177s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 177s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 177s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 177s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 177s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 177s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 177s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 177s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 177s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 178s Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 178s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 178s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 178s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 178s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 178s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 178s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 178s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 178s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 178s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 178s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 178s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 178s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 178s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 178s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 178s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 178s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 178s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 178s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 178s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 178s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 178s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 178s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 178s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 178s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 178s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 178s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 178s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 178s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 178s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 178s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 178s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 178s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 178s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 178s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 178s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 178s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 178s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 178s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 178s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 178s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 178s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 178s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 178s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 178s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 178s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 178s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 178s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 178s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 178s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 178s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 178s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 178s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 178s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 178s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 178s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 178s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 178s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 178s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 178s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 178s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 178s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 178s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 178s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 178s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 178s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 178s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 178s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 178s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 178s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 178s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 178s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 178s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 178s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 178s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 178s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 178s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 178s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 178s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 178s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 178s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 178s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 178s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 178s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 178s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 178s Get:224 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 178s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 178s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 178s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 178s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 178s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 178s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 178s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 178s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 178s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 178s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 178s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 178s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 178s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 178s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 178s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 178s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 178s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 178s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 178s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 178s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 178s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 178s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 178s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 178s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 178s Get:249 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 178s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 178s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 179s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 179s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 179s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 179s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 179s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 179s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 179s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 179s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 179s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 179s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 179s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 179s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 179s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 179s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 179s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 179s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 179s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 179s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 179s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 179s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 179s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 179s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 179s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 179s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 179s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cluster amd64 2.1.6-1 [554 kB] 179s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 179s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rpart amd64 4.1.23-1 [661 kB] 179s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nnet amd64 7.3-19-2 [112 kB] 179s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-foreign amd64 0.8.86-1 [242 kB] 179s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 179s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-data.table amd64 1.14.10+dfsg-1 [1837 kB] 179s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-backports amd64 1.4.1-1 [101 kB] 179s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-checkmate amd64 2.3.1-1 [713 kB] 179s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 179s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rstudioapi all 0.15.0-1 [277 kB] 179s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltable all 2.4.2-1 [381 kB] 179s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 179s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 179s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-chron amd64 2.3-61-2 [186 kB] 179s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 179s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-deldir amd64 2.0-4-1 [270 kB] 179s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppeigen amd64 0.3.3.9.4-1 [1189 kB] 179s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 179s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 179s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-acepack amd64 1.4.2-1 [61.3 kB] 179s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hmisc amd64 5.1-1-1 [3491 kB] 180s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 180s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 180s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 180s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 180s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 180s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 180s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 180s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 180s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 180s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 180s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 180s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 180s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 180s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 180s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 180s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 180s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-variantannotation amd64 1.48.1-1 [3527 kB] 180s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 180s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 180s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biovizbase amd64 1.50.0-1 [2665 kB] 180s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-gviz all 1.46.1+dfsg-1 [4855 kB] 180s Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 180s Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 180s Get:321 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 180s Get:322 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 180s Get:323 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 180s Get:324 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 180s Get:325 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 180s Get:326 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 180s Get:327 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 180s Get:328 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 180s Get:329 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 180s Get:330 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 180s Get:331 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 181s Preconfiguring packages ... 181s Fetched 488 MB in 4s (130 MB/s) 181s Selecting previously unselected package libc-dev-bin. 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71421 files and directories currently installed.) 181s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 181s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 181s Selecting previously unselected package linux-libc-dev:amd64. 181s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 181s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 181s Selecting previously unselected package libcrypt-dev:amd64. 181s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 181s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 181s Selecting previously unselected package libtirpc-dev:amd64. 181s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 181s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 181s Selecting previously unselected package libnsl-dev:amd64. 181s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 181s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 181s Selecting previously unselected package rpcsvc-proto. 181s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 181s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 182s Selecting previously unselected package libc6-dev:amd64. 182s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 182s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 182s Selecting previously unselected package libisl23:amd64. 182s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 182s Unpacking libisl23:amd64 (0.26-3) ... 182s Selecting previously unselected package libmpc3:amd64. 182s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 182s Unpacking libmpc3:amd64 (1.3.1-1) ... 182s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 182s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 182s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 182s Selecting previously unselected package cpp-13. 182s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 182s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 182s Selecting previously unselected package cpp-x86-64-linux-gnu. 182s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 182s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 182s Selecting previously unselected package cpp. 182s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 182s Unpacking cpp (4:13.2.0-7ubuntu1) ... 182s Selecting previously unselected package libcc1-0:amd64. 182s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 182s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 182s Selecting previously unselected package libgomp1:amd64. 182s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 182s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 182s Selecting previously unselected package libitm1:amd64. 182s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 182s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 182s Selecting previously unselected package libatomic1:amd64. 182s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 182s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 182s Selecting previously unselected package libasan8:amd64. 182s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 182s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 182s Selecting previously unselected package liblsan0:amd64. 182s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 182s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 182s Selecting previously unselected package libtsan2:amd64. 182s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 182s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 182s Selecting previously unselected package libubsan1:amd64. 182s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 182s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 182s Selecting previously unselected package libhwasan0:amd64. 182s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 182s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 182s Selecting previously unselected package libquadmath0:amd64. 182s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 182s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 183s Selecting previously unselected package libgcc-13-dev:amd64. 183s 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fonts-mathjax (2.7.9+dfsg-1) ... 185s Selecting previously unselected package libgfortran5:amd64. 185s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 185s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 185s Selecting previously unselected package libgfortran-13-dev:amd64. 185s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 185s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 185s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 185s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 185s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 185s Selecting previously unselected package gfortran-13. 185s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 185s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 185s Selecting previously unselected package gfortran-x86-64-linux-gnu. 185s Preparing to unpack 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libcairo2:amd64. 188s Preparing to unpack .../064-libcairo2_1.18.0-1_amd64.deb ... 188s Unpacking libcairo2:amd64 (1.18.0-1) ... 189s Selecting previously unselected package libdatrie1:amd64. 189s Preparing to unpack .../065-libdatrie1_0.2.13-3_amd64.deb ... 189s Unpacking libdatrie1:amd64 (0.2.13-3) ... 189s Selecting previously unselected package libdeflate0:amd64. 189s Preparing to unpack .../066-libdeflate0_1.19-1_amd64.deb ... 189s Unpacking libdeflate0:amd64 (1.19-1) ... 189s Selecting previously unselected package libgraphite2-3:amd64. 189s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_amd64.deb ... 189s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 189s Selecting previously unselected package libharfbuzz0b:amd64. 189s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_amd64.deb ... 189s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 189s Selecting previously unselected package x11-common. 189s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 189s Unpacking 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previously unselected package libpangoft2-1.0-0:amd64. 190s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 190s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 190s Selecting previously unselected package libpangocairo-1.0-0:amd64. 190s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 190s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 190s Selecting previously unselected package libpaper1:amd64. 190s Preparing to unpack .../103-libpaper1_1.1.29_amd64.deb ... 190s Unpacking libpaper1:amd64 (1.1.29) ... 190s Selecting previously unselected package libpaper-utils. 190s Preparing to unpack .../104-libpaper-utils_1.1.29_amd64.deb ... 190s Unpacking libpaper-utils (1.1.29) ... 190s Selecting previously unselected package libpcre2-16-0:amd64. 190s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 190s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 190s Selecting previously unselected package libpcre2-32-0:amd64. 190s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 190s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 190s Selecting previously unselected package libpcre2-posix3:amd64. 190s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 190s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 190s Selecting previously unselected package libpcre2-dev:amd64. 190s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 190s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 190s Selecting previously unselected package libpkgconf3:amd64. 190s Preparing to unpack .../109-libpkgconf3_1.8.1-2_amd64.deb ... 190s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 190s Selecting previously unselected package zlib1g-dev:amd64. 190s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 190s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 190s Selecting previously unselected package libpng-dev:amd64. 190s Preparing to unpack .../111-libpng-dev_1.6.43-1_amd64.deb ... 190s Unpacking libpng-dev:amd64 (1.6.43-1) ... 190s Selecting previously unselected package libpotrace0:amd64. 190s Preparing to unpack .../112-libpotrace0_1.16-2_amd64.deb ... 190s Unpacking libpotrace0:amd64 (1.16-2) ... 190s Selecting previously unselected package libptexenc1:amd64. 190s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_amd64.deb ... 190s Unpacking libptexenc1:amd64 (2023.20230311.66589-9) ... 190s Selecting previously unselected package libreadline-dev:amd64. 190s Preparing to unpack .../114-libreadline-dev_8.2-3_amd64.deb ... 190s Unpacking libreadline-dev:amd64 (8.2-3) ... 191s Selecting previously unselected package libsharpyuv0:amd64. 191s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_amd64.deb ... 191s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 191s Selecting previously unselected package libsm6:amd64. 191s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_amd64.deb ... 191s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 191s Selecting previously unselected package libsynctex2:amd64. 191s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_amd64.deb ... 191s Unpacking libsynctex2:amd64 (2023.20230311.66589-9) ... 191s Selecting previously unselected package libtcl8.6:amd64. 191s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 191s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 191s Selecting previously unselected package libteckit0:amd64. 191s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_amd64.deb ... 191s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 191s Selecting previously unselected package libtexlua53-5:amd64. 191s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_amd64.deb ... 191s Unpacking libtexlua53-5:amd64 (2023.20230311.66589-9) ... 191s Selecting previously unselected package libjbig0:amd64. 191s Preparing to unpack .../121-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 191s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 191s Selecting previously unselected package libwebp7:amd64. 191s Preparing to unpack .../122-libwebp7_1.3.2-0.4_amd64.deb ... 191s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 191s Selecting previously unselected package libtiff6:amd64. 191s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 191s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 191s Selecting previously unselected package libxft2:amd64. 191s Preparing to unpack .../124-libxft2_2.3.6-1_amd64.deb ... 191s Unpacking libxft2:amd64 (2.3.6-1) ... 191s Selecting previously unselected package libxss1:amd64. 191s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_amd64.deb ... 191s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 191s Selecting previously unselected package libtk8.6:amd64. 191s Preparing to unpack .../126-libtk8.6_8.6.13-2_amd64.deb ... 191s Unpacking libtk8.6:amd64 (8.6.13-2) ... 191s Selecting previously unselected package libxt6:amd64. 191s Preparing to unpack .../127-libxt6_1%3a1.2.1-1.1_amd64.deb ... 191s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 191s Selecting previously unselected package libxmu6:amd64. 191s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_amd64.deb ... 191s Unpacking libxmu6:amd64 (2:1.1.3-3) ... 191s Selecting previously unselected package libxpm4:amd64. 191s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_amd64.deb ... 191s Unpacking libxpm4:amd64 (1:3.5.17-1) ... 191s Selecting previously unselected package libxaw7:amd64. 191s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_amd64.deb ... 191s Unpacking libxaw7:amd64 (2:1.0.14-1) ... 191s Selecting previously unselected package libxi6:amd64. 191s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_amd64.deb ... 191s Unpacking libxi6:amd64 (2:1.8.1-1) ... 191s Selecting previously unselected package libzzip-0-13:amd64. 191s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... 191s Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 191s Selecting previously unselected package node-bootstrap-sass. 191s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ... 191s Unpacking node-bootstrap-sass (3.4.3-2) ... 191s Selecting previously unselected package node-html5shiv. 191s Preparing to unpack .../134-node-html5shiv_3.7.3+dfsg-5_all.deb ... 191s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 191s Selecting previously unselected package node-normalize.css. 191s Preparing to unpack .../135-node-normalize.css_8.0.1-5_all.deb ... 191s Unpacking node-normalize.css (8.0.1-5) ... 191s Selecting previously unselected package pandoc-data. 191s Preparing to unpack .../136-pandoc-data_3.1.3-1_all.deb ... 191s Unpacking pandoc-data (3.1.3-1) ... 191s Selecting previously unselected package pandoc. 191s Preparing to unpack .../137-pandoc_3.1.3+ds-2_amd64.deb ... 191s Unpacking pandoc (3.1.3+ds-2) ... 192s Selecting previously unselected package pkgconf-bin. 192s Preparing to unpack .../138-pkgconf-bin_1.8.1-2_amd64.deb ... 192s Unpacking pkgconf-bin (1.8.1-2) ... 192s Selecting previously unselected package pkgconf:amd64. 192s Preparing to unpack .../139-pkgconf_1.8.1-2_amd64.deb ... 192s Unpacking pkgconf:amd64 (1.8.1-2) ... 193s Selecting previously unselected package pkg-config:amd64. 193s Preparing to unpack .../140-pkg-config_1.8.1-2_amd64.deb ... 193s Unpacking pkg-config:amd64 (1.8.1-2) ... 193s Selecting previously unselected package zip. 193s Preparing to unpack .../141-zip_3.0-13_amd64.deb ... 193s Unpacking zip (3.0-13) ... 193s Selecting previously unselected package unzip. 193s Preparing to unpack .../142-unzip_6.0-28ubuntu3_amd64.deb ... 193s Unpacking unzip (6.0-28ubuntu3) ... 193s Selecting previously unselected package xdg-utils. 193s Preparing to unpack .../143-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 193s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 193s Selecting previously unselected package r-base-core. 193s Preparing to unpack .../144-r-base-core_4.3.2-1build1_amd64.deb ... 193s Unpacking r-base-core (4.3.2-1build1) ... 193s Selecting previously unselected package liblzma-dev:amd64. 193s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_amd64.deb ... 193s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 193s Selecting previously unselected package r-base-dev. 193s Preparing to unpack .../146-r-base-dev_4.3.2-1build1_all.deb ... 193s Unpacking r-base-dev (4.3.2-1build1) ... 193s Selecting previously unselected package pkg-r-autopkgtest. 193s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 193s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 193s Selecting previously unselected package r-bioc-biocgenerics. 193s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 193s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 193s Selecting previously unselected package r-bioc-biobase. 193s Preparing to unpack .../149-r-bioc-biobase_2.62.0-1_amd64.deb ... 193s Unpacking r-bioc-biobase (2.62.0-1) ... 193s Selecting previously unselected package r-bioc-s4vectors. 193s Preparing to unpack .../150-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 193s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 193s Selecting previously unselected package r-bioc-iranges. 193s Preparing to unpack .../151-r-bioc-iranges_2.36.0-1_amd64.deb ... 193s Unpacking r-bioc-iranges (2.36.0-1) ... 193s Selecting previously unselected package r-cran-dbi. 193s Preparing to unpack .../152-r-cran-dbi_1.2.2-1_all.deb ... 193s Unpacking r-cran-dbi (1.2.2-1) ... 194s Selecting previously unselected package r-cran-bit. 194s Preparing to unpack .../153-r-cran-bit_4.0.5-1_amd64.deb ... 194s Unpacking r-cran-bit (4.0.5-1) ... 194s Selecting previously unselected package r-cran-bit64. 194s Preparing to unpack .../154-r-cran-bit64_4.0.5-1_amd64.deb ... 194s Unpacking r-cran-bit64 (4.0.5-1) ... 194s Selecting previously unselected package r-cran-rlang. 194s Preparing to unpack .../155-r-cran-rlang_1.1.3-1_amd64.deb ... 194s Unpacking r-cran-rlang (1.1.3-1) ... 194s Selecting previously unselected package r-cran-cli. 194s Preparing to unpack .../156-r-cran-cli_3.6.2-1_amd64.deb ... 194s Unpacking r-cran-cli (3.6.2-1) ... 194s Selecting previously unselected package r-cran-glue. 194s Preparing to unpack .../157-r-cran-glue_1.7.0-1_amd64.deb ... 194s Unpacking r-cran-glue (1.7.0-1) ... 194s Selecting previously unselected package r-cran-lifecycle. 194s Preparing to unpack .../158-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 194s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 194s Selecting previously unselected package r-cran-vctrs. 194s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_amd64.deb ... 194s Unpacking r-cran-vctrs (0.6.5-1) ... 194s Selecting previously unselected package r-cran-blob. 194s Preparing to unpack .../160-r-cran-blob_1.2.4-1_all.deb ... 194s Unpacking r-cran-blob (1.2.4-1) ... 194s Selecting previously unselected package r-cran-fastmap. 194s Preparing to unpack .../161-r-cran-fastmap_1.1.1-1_amd64.deb ... 194s Unpacking r-cran-fastmap (1.1.1-1) ... 194s Selecting previously unselected package r-cran-cachem. 194s Preparing to unpack .../162-r-cran-cachem_1.0.8-1_amd64.deb ... 194s Unpacking r-cran-cachem (1.0.8-1) ... 194s Selecting previously unselected package r-cran-memoise. 194s Preparing to unpack .../163-r-cran-memoise_2.0.1-1_all.deb ... 194s Unpacking r-cran-memoise (2.0.1-1) ... 194s Selecting previously unselected package r-cran-pkgconfig. 194s Preparing to unpack .../164-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 194s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 194s Selecting previously unselected package r-cran-plogr. 194s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build1_all.deb ... 194s Unpacking r-cran-plogr (0.2.0-3build1) ... 194s Selecting previously unselected package r-cran-cpp11. 194s Preparing to unpack .../166-r-cran-cpp11_0.4.7-1_all.deb ... 194s Unpacking r-cran-cpp11 (0.4.7-1) ... 194s Selecting previously unselected package r-cran-rsqlite. 194s Preparing to unpack .../167-r-cran-rsqlite_2.3.4-1_amd64.deb ... 194s Unpacking r-cran-rsqlite (2.3.4-1) ... 194s Selecting previously unselected package r-cran-curl. 194s Preparing to unpack .../168-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 194s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 194s Selecting previously unselected package r-cran-jsonlite. 194s Preparing to unpack .../169-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 194s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 194s Selecting previously unselected package r-cran-mime. 194s Preparing to unpack .../170-r-cran-mime_0.12-1_amd64.deb ... 194s Unpacking r-cran-mime (0.12-1) ... 194s Selecting previously unselected package r-cran-sys. 194s Preparing to unpack .../171-r-cran-sys_3.4.2-1_amd64.deb ... 194s Unpacking r-cran-sys (3.4.2-1) ... 194s Selecting previously unselected package r-cran-askpass. 194s Preparing to unpack .../172-r-cran-askpass_1.2.0-1_amd64.deb ... 194s Unpacking r-cran-askpass (1.2.0-1) ... 194s Selecting previously unselected package r-cran-openssl. 194s Preparing to unpack .../173-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 194s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 195s Selecting previously unselected package r-cran-r6. 195s Preparing to unpack .../174-r-cran-r6_2.5.1-1_all.deb ... 195s Unpacking r-cran-r6 (2.5.1-1) ... 195s Selecting previously unselected package r-cran-httr. 195s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ... 195s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 195s Selecting previously unselected package r-cran-png. 195s Preparing to unpack .../176-r-cran-png_0.1-8-1_amd64.deb ... 195s Unpacking r-cran-png (0.1-8-1) ... 195s Selecting previously unselected package r-bioc-zlibbioc. 195s Preparing to unpack .../177-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 195s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 195s Selecting previously unselected package r-bioc-xvector. 195s Preparing to unpack .../178-r-bioc-xvector_0.42.0-1_amd64.deb ... 195s Unpacking r-bioc-xvector (0.42.0-1) ... 195s Selecting previously unselected package r-cran-bitops. 195s Preparing to unpack .../179-r-cran-bitops_1.0-7-1_amd64.deb ... 195s Unpacking r-cran-bitops (1.0-7-1) ... 195s Selecting previously unselected package r-cran-rcurl. 195s Preparing to unpack .../180-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 195s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 195s Selecting previously unselected package r-bioc-genomeinfodbdata. 195s Preparing to unpack .../181-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 195s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 195s Selecting previously unselected package r-bioc-genomeinfodb. 195s Preparing to unpack .../182-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 195s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 195s Selecting previously unselected package r-cran-crayon. 195s Preparing to unpack .../183-r-cran-crayon_1.5.2-1_all.deb ... 195s Unpacking r-cran-crayon (1.5.2-1) ... 195s Selecting previously unselected package r-bioc-biostrings. 195s Preparing to unpack .../184-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 195s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 195s Selecting previously unselected package r-bioc-keggrest. 195s Preparing to unpack .../185-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 195s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 195s Selecting previously unselected package r-bioc-annotationdbi. 195s Preparing to unpack .../186-r-bioc-annotationdbi_1.64.1-1_all.deb ... 195s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 195s Selecting previously unselected package r-bioc-genomicranges. 195s Preparing to unpack .../187-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 195s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 195s Selecting previously unselected package r-cran-lazyeval. 195s Preparing to unpack .../188-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 195s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 195s Selecting previously unselected package r-bioc-annotationfilter. 195s Preparing to unpack .../189-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 195s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 195s Selecting previously unselected package r-cran-generics. 195s Preparing to unpack .../190-r-cran-generics_0.1.3-1_all.deb ... 195s Unpacking r-cran-generics (0.1.3-1) ... 196s Selecting previously unselected package r-cran-magrittr. 196s Preparing to unpack .../191-r-cran-magrittr_2.0.3-1_amd64.deb ... 196s Unpacking r-cran-magrittr (2.0.3-1) ... 196s Selecting previously unselected package r-cran-fansi. 196s Preparing to unpack .../192-r-cran-fansi_1.0.5-1_amd64.deb ... 196s Unpacking r-cran-fansi (1.0.5-1) ... 196s Selecting previously unselected package r-cran-utf8. 196s Preparing to unpack .../193-r-cran-utf8_1.2.4-1_amd64.deb ... 196s Unpacking r-cran-utf8 (1.2.4-1) ... 196s Selecting previously unselected package r-cran-pillar. 196s Preparing to unpack .../194-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 196s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 196s Selecting previously unselected package r-cran-tibble. 196s Preparing to unpack .../195-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 196s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 196s Selecting previously unselected package r-cran-withr. 196s Preparing to unpack .../196-r-cran-withr_2.5.0-1_all.deb ... 196s Unpacking r-cran-withr (2.5.0-1) ... 196s Selecting previously unselected package r-cran-tidyselect. 196s Preparing to unpack .../197-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 196s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 196s Selecting previously unselected package r-cran-dplyr. 196s Preparing to unpack .../198-r-cran-dplyr_1.1.4-1_amd64.deb ... 196s Unpacking r-cran-dplyr (1.1.4-1) ... 196s Selecting previously unselected package r-cran-purrr. 196s Preparing to unpack .../199-r-cran-purrr_1.0.2-1_amd64.deb ... 196s Unpacking r-cran-purrr (1.0.2-1) ... 196s Selecting previously unselected package r-cran-stringi. 196s Preparing to unpack .../200-r-cran-stringi_1.8.3-1_amd64.deb ... 196s Unpacking r-cran-stringi (1.8.3-1) ... 196s Selecting previously unselected package r-cran-stringr. 196s Preparing to unpack .../201-r-cran-stringr_1.5.1-1_all.deb ... 196s Unpacking r-cran-stringr (1.5.1-1) ... 196s Selecting previously unselected package r-cran-tidyr. 196s Preparing to unpack .../202-r-cran-tidyr_1.3.1-1_amd64.deb ... 196s Unpacking r-cran-tidyr (1.3.1-1) ... 196s Selecting previously unselected package r-cran-dbplyr. 196s Preparing to unpack .../203-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 196s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 196s Selecting previously unselected package r-cran-filelock. 196s Preparing to unpack .../204-r-cran-filelock_1.0.3-1_amd64.deb ... 196s Unpacking r-cran-filelock (1.0.3-1) ... 196s Selecting previously unselected package r-bioc-biocfilecache. 196s Preparing to unpack .../205-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 196s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 196s Selecting previously unselected package r-bioc-biocio. 196s Preparing to unpack .../206-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 196s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 196s Selecting previously unselected package r-cran-formatr. 196s Preparing to unpack .../207-r-cran-formatr_1.14-1_all.deb ... 196s Unpacking r-cran-formatr (1.14-1) ... 196s Selecting previously unselected package r-cran-lambda.r. 196s Preparing to unpack .../208-r-cran-lambda.r_1.2.4-2build1_all.deb ... 196s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 196s Selecting previously unselected package r-cran-futile.options. 196s Preparing to unpack .../209-r-cran-futile.options_1.0.1-3build1_all.deb ... 196s Unpacking r-cran-futile.options (1.0.1-3build1) ... 196s Selecting previously unselected package r-cran-futile.logger. 196s Preparing to unpack .../210-r-cran-futile.logger_1.4.3-4build1_all.deb ... 196s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 196s Selecting previously unselected package r-cran-snow. 196s Preparing to unpack .../211-r-cran-snow_1%3a0.4.4-2_all.deb ... 196s Unpacking r-cran-snow (1:0.4.4-2) ... 196s Selecting previously unselected package r-cran-codetools. 196s Preparing to unpack .../212-r-cran-codetools_0.2-19-1_all.deb ... 196s Unpacking r-cran-codetools (0.2-19-1) ... 196s Selecting previously unselected package r-cran-bh. 196s Preparing to unpack .../213-r-cran-bh_1.84.0-1_all.deb ... 196s Unpacking r-cran-bh (1.84.0-1) ... 197s Selecting previously unselected package r-bioc-biocparallel. 197s Preparing to unpack .../214-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 197s Unpacking r-bioc-biocparallel (1.36.0-1) ... 197s Selecting previously unselected package r-cran-base64enc. 197s Preparing to unpack .../215-r-cran-base64enc_0.1-3-3_amd64.deb ... 197s Unpacking r-cran-base64enc (0.1-3-3) ... 197s Selecting previously unselected package r-cran-digest. 197s Preparing to unpack .../216-r-cran-digest_0.6.34-1_amd64.deb ... 197s Unpacking r-cran-digest (0.6.34-1) ... 197s Selecting previously unselected package r-cran-ellipsis. 197s Preparing to unpack .../217-r-cran-ellipsis_0.3.2-2_amd64.deb ... 197s Unpacking r-cran-ellipsis (0.3.2-2) ... 197s Selecting previously unselected package r-cran-htmltools. 197s Preparing to unpack .../218-r-cran-htmltools_0.5.7-1_amd64.deb ... 197s Unpacking r-cran-htmltools (0.5.7-1) ... 197s Selecting previously unselected package r-cran-evaluate. 197s Preparing to unpack .../219-r-cran-evaluate_0.23-1_all.deb ... 197s Unpacking r-cran-evaluate (0.23-1) ... 197s Selecting previously unselected package r-cran-xfun. 197s Preparing to unpack .../220-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 197s Unpacking r-cran-xfun (0.41+dfsg-1) ... 197s Selecting previously unselected package r-cran-highr. 197s Preparing to unpack .../221-r-cran-highr_0.10+dfsg-1_all.deb ... 197s Unpacking r-cran-highr (0.10+dfsg-1) ... 197s Selecting previously unselected package r-cran-yaml. 197s Preparing to unpack .../222-r-cran-yaml_2.3.8-1_amd64.deb ... 197s Unpacking r-cran-yaml (2.3.8-1) ... 197s Selecting previously unselected package libjs-mathjax. 197s Preparing to unpack .../223-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 197s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 199s Selecting previously unselected package r-cran-knitr. 199s Preparing to unpack .../224-r-cran-knitr_1.45+dfsg-1_all.deb ... 199s Unpacking r-cran-knitr (1.45+dfsg-1) ... 199s Selecting previously unselected package r-cran-jquerylib. 199s Preparing to unpack .../225-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 199s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 199s Selecting previously unselected package r-cran-fs. 199s Preparing to unpack .../226-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 199s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 199s Selecting previously unselected package r-cran-rappdirs. 199s Preparing to unpack .../227-r-cran-rappdirs_0.3.3-1_amd64.deb ... 199s Unpacking r-cran-rappdirs (0.3.3-1) ... 199s Selecting previously unselected package r-cran-sass. 199s Preparing to unpack .../228-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 199s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 199s Selecting previously unselected package r-cran-bslib. 199s Preparing to unpack .../229-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 199s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 199s Selecting previously unselected package r-cran-fontawesome. 199s Preparing to unpack .../230-r-cran-fontawesome_0.5.2-1_all.deb ... 199s Unpacking r-cran-fontawesome (0.5.2-1) ... 199s Selecting previously unselected package r-cran-tinytex. 199s Preparing to unpack .../231-r-cran-tinytex_0.49-1_all.deb ... 199s Unpacking r-cran-tinytex (0.49-1) ... 199s Selecting previously unselected package libjs-modernizr. 199s Preparing to unpack .../232-libjs-modernizr_2.6.2+ds1-5_all.deb ... 199s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 199s Selecting previously unselected package r-cran-littler. 199s Preparing to unpack .../233-r-cran-littler_0.3.19-1_amd64.deb ... 199s Unpacking r-cran-littler (0.3.19-1) ... 199s Selecting previously unselected package r-cran-pkgkitten. 199s Preparing to unpack .../234-r-cran-pkgkitten_0.2.3-1_all.deb ... 199s Unpacking r-cran-pkgkitten (0.2.3-1) ... 199s Selecting previously unselected package r-cran-rcpp. 199s Preparing to unpack .../235-r-cran-rcpp_1.0.12-1_amd64.deb ... 199s Unpacking r-cran-rcpp (1.0.12-1) ... 199s Selecting previously unselected package r-cran-later. 199s Preparing to unpack .../236-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 199s Unpacking r-cran-later (1.3.2+dfsg-1) ... 199s Selecting previously unselected package r-cran-promises. 199s Preparing to unpack .../237-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 199s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 199s Selecting previously unselected package r-cran-httpuv. 199s Preparing to unpack .../238-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 199s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 199s Selecting previously unselected package r-cran-xtable. 199s Preparing to unpack .../239-r-cran-xtable_1%3a1.8-4-2_all.deb ... 199s Unpacking r-cran-xtable (1:1.8-4-2) ... 199s Selecting previously unselected package r-cran-sourcetools. 199s Preparing to unpack .../240-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 199s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 199s Selecting previously unselected package r-cran-commonmark. 199s Preparing to unpack .../241-r-cran-commonmark_1.9.1-1_amd64.deb ... 199s Unpacking r-cran-commonmark (1.9.1-1) ... 199s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 199s Preparing to unpack .../242-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 199s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 199s Selecting previously unselected package r-cran-shiny. 199s Preparing to unpack .../243-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 199s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 199s Selecting previously unselected package r-cran-rmarkdown. 199s Preparing to unpack .../244-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 199s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 199s Selecting previously unselected package r-cran-bookdown. 199s Preparing to unpack .../245-r-cran-bookdown_0.37+dfsg-1_all.deb ... 199s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 199s Selecting previously unselected package r-cran-biocmanager. 199s Preparing to unpack .../246-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 199s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 199s Selecting previously unselected package tex-common. 199s Preparing to unpack .../247-tex-common_6.18_all.deb ... 199s Unpacking tex-common (6.18) ... 199s Selecting previously unselected package t1utils. 199s Preparing to unpack .../248-t1utils_1.41-4build2_amd64.deb ... 199s Unpacking t1utils (1.41-4build2) ... 199s Selecting previously unselected package texlive-binaries. 199s Preparing to unpack .../249-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 199s Unpacking texlive-binaries (2023.20230311.66589-9) ... 199s Selecting previously unselected package texlive-base. 199s Preparing to unpack .../250-texlive-base_2023.20240207-1_all.deb ... 199s Unpacking texlive-base (2023.20240207-1) ... 201s Selecting previously unselected package texlive-latex-base. 201s Preparing to unpack .../251-texlive-latex-base_2023.20240207-1_all.deb ... 201s Unpacking texlive-latex-base (2023.20240207-1) ... 201s Selecting previously unselected package texlive-bibtex-extra. 201s Preparing to unpack .../252-texlive-bibtex-extra_2023.20240207-1_all.deb ... 201s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 205s Selecting previously unselected package r-bioc-biocstyle. 205s Preparing to unpack .../253-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 205s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 205s Selecting previously unselected package r-cran-xml. 205s Preparing to unpack .../254-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 205s Unpacking r-cran-xml (3.99-0.16.1-1) ... 205s Selecting previously unselected package r-cran-hms. 205s Preparing to unpack .../255-r-cran-hms_1.1.3-1_all.deb ... 205s Unpacking r-cran-hms (1.1.3-1) ... 205s Selecting previously unselected package r-cran-prettyunits. 205s Preparing to unpack .../256-r-cran-prettyunits_1.2.0-1_all.deb ... 205s Unpacking r-cran-prettyunits (1.2.0-1) ... 205s Selecting previously unselected package r-cran-progress. 205s Preparing to unpack .../257-r-cran-progress_1.2.3-1_all.deb ... 205s Unpacking r-cran-progress (1.2.3-1) ... 205s Selecting previously unselected package r-cran-xml2. 205s Preparing to unpack .../258-r-cran-xml2_1.3.6-1_amd64.deb ... 205s Unpacking r-cran-xml2 (1.3.6-1) ... 205s Selecting previously unselected package r-bioc-biomart. 205s Preparing to unpack .../259-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 205s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 205s Selecting previously unselected package r-cran-farver. 205s Preparing to unpack .../260-r-cran-farver_2.1.1-1_amd64.deb ... 205s Unpacking r-cran-farver (2.1.1-1) ... 205s Selecting previously unselected package r-cran-labeling. 205s Preparing to unpack .../261-r-cran-labeling_0.4.3-1_all.deb ... 205s Unpacking r-cran-labeling (0.4.3-1) ... 205s Selecting previously unselected package r-cran-colorspace. 205s Preparing to unpack .../262-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 205s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 205s Selecting previously unselected package r-cran-munsell. 205s Preparing to unpack .../263-r-cran-munsell_0.5.0-2build1_all.deb ... 205s Unpacking r-cran-munsell (0.5.0-2build1) ... 205s Selecting previously unselected package r-cran-rcolorbrewer. 205s Preparing to unpack .../264-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 205s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 205s Selecting previously unselected package r-cran-viridislite. 205s Preparing to unpack .../265-r-cran-viridislite_0.4.2-2_all.deb ... 205s Unpacking r-cran-viridislite (0.4.2-2) ... 205s Selecting previously unselected package r-cran-scales. 205s Preparing to unpack .../266-r-cran-scales_1.3.0-1_all.deb ... 205s Unpacking r-cran-scales (1.3.0-1) ... 205s Selecting previously unselected package r-cran-gtable. 205s Preparing to unpack .../267-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 205s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 205s Selecting previously unselected package r-cran-isoband. 205s Preparing to unpack .../268-r-cran-isoband_0.2.7-1_amd64.deb ... 205s Unpacking r-cran-isoband (0.2.7-1) ... 205s Selecting previously unselected package r-cran-mass. 206s Preparing to unpack .../269-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 206s Unpacking r-cran-mass (7.3-60.0.1-1) ... 206s Selecting previously unselected package r-cran-lattice. 206s Preparing to unpack .../270-r-cran-lattice_0.22-5-1_amd64.deb ... 206s Unpacking r-cran-lattice (0.22-5-1) ... 206s Selecting previously unselected package r-cran-nlme. 206s Preparing to unpack .../271-r-cran-nlme_3.1.164-1_amd64.deb ... 206s Unpacking r-cran-nlme (3.1.164-1) ... 206s Selecting previously unselected package r-cran-matrix. 206s Preparing to unpack .../272-r-cran-matrix_1.6-5-1_amd64.deb ... 206s Unpacking r-cran-matrix (1.6-5-1) ... 206s Selecting previously unselected package r-cran-mgcv. 206s Preparing to unpack .../273-r-cran-mgcv_1.9-1-1_amd64.deb ... 206s Unpacking r-cran-mgcv (1.9-1-1) ... 206s Selecting previously unselected package r-cran-ggplot2. 206s Preparing to unpack .../274-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 206s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 206s Selecting previously unselected package r-cran-cluster. 206s Preparing to unpack .../275-r-cran-cluster_2.1.6-1_amd64.deb ... 206s Unpacking r-cran-cluster (2.1.6-1) ... 206s Selecting previously unselected package r-cran-survival. 206s Preparing to unpack .../276-r-cran-survival_3.5-8-1_amd64.deb ... 206s Unpacking r-cran-survival (3.5-8-1) ... 206s Selecting previously unselected package r-cran-rpart. 206s Preparing to unpack .../277-r-cran-rpart_4.1.23-1_amd64.deb ... 206s Unpacking r-cran-rpart (4.1.23-1) ... 206s Selecting previously unselected package r-cran-nnet. 206s Preparing to unpack .../278-r-cran-nnet_7.3-19-2_amd64.deb ... 206s Unpacking r-cran-nnet (7.3-19-2) ... 206s Selecting previously unselected package r-cran-foreign. 206s Preparing to unpack .../279-r-cran-foreign_0.8.86-1_amd64.deb ... 206s Unpacking r-cran-foreign (0.8.86-1) ... 206s Selecting previously unselected package r-cran-gridextra. 206s Preparing to unpack .../280-r-cran-gridextra_2.3-3build1_all.deb ... 206s Unpacking r-cran-gridextra (2.3-3build1) ... 206s Selecting previously unselected package r-cran-data.table. 206s Preparing to unpack .../281-r-cran-data.table_1.14.10+dfsg-1_amd64.deb ... 206s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 206s Selecting previously unselected package r-cran-backports. 206s Preparing to unpack .../282-r-cran-backports_1.4.1-1_amd64.deb ... 206s Unpacking r-cran-backports (1.4.1-1) ... 206s Selecting previously unselected package r-cran-checkmate. 206s Preparing to unpack .../283-r-cran-checkmate_2.3.1-1_amd64.deb ... 206s Unpacking r-cran-checkmate (2.3.1-1) ... 206s Selecting previously unselected package r-cran-htmlwidgets. 206s Preparing to unpack .../284-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 206s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 206s Selecting previously unselected package r-cran-rstudioapi. 206s Preparing to unpack .../285-r-cran-rstudioapi_0.15.0-1_all.deb ... 206s Unpacking r-cran-rstudioapi (0.15.0-1) ... 206s Selecting previously unselected package r-cran-htmltable. 206s Preparing to unpack .../286-r-cran-htmltable_2.4.2-1_all.deb ... 206s Unpacking r-cran-htmltable (2.4.2-1) ... 207s Selecting previously unselected package r-cran-viridis. 207s Preparing to unpack .../287-r-cran-viridis_0.6.5-1_all.deb ... 207s Unpacking r-cran-viridis (0.6.5-1) ... 207s Selecting previously unselected package r-cran-formula. 207s Preparing to unpack .../288-r-cran-formula_1.2-5-1_all.deb ... 207s Unpacking r-cran-formula (1.2-5-1) ... 207s Selecting previously unselected package r-cran-chron. 207s Preparing to unpack .../289-r-cran-chron_2.3-61-2_amd64.deb ... 207s Unpacking r-cran-chron (2.3-61-2) ... 207s Selecting previously unselected package r-cran-jpeg. 207s Preparing to unpack .../290-r-cran-jpeg_0.1-10-1_amd64.deb ... 207s Unpacking r-cran-jpeg (0.1-10-1) ... 207s Selecting previously unselected package r-cran-deldir. 207s Preparing to unpack .../291-r-cran-deldir_2.0-4-1_amd64.deb ... 207s Unpacking r-cran-deldir (2.0-4-1) ... 207s Selecting previously unselected package r-cran-rcppeigen. 207s Preparing to unpack .../292-r-cran-rcppeigen_0.3.3.9.4-1_amd64.deb ... 207s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 207s Selecting previously unselected package r-cran-interp. 207s Preparing to unpack .../293-r-cran-interp_1.1-6-1_amd64.deb ... 207s Unpacking r-cran-interp (1.1-6-1) ... 207s Selecting previously unselected package r-cran-latticeextra. 207s Preparing to unpack .../294-r-cran-latticeextra_0.6-30-1_all.deb ... 207s Unpacking r-cran-latticeextra (0.6-30-1) ... 207s Selecting previously unselected package r-cran-acepack. 207s Preparing to unpack .../295-r-cran-acepack_1.4.2-1_amd64.deb ... 207s Unpacking r-cran-acepack (1.4.2-1) ... 207s Selecting previously unselected package r-cran-hmisc. 207s Preparing to unpack .../296-r-cran-hmisc_5.1-1-1_amd64.deb ... 207s Unpacking r-cran-hmisc (5.1-1-1) ... 207s Selecting previously unselected package r-cran-dichromat. 207s Preparing to unpack .../297-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 207s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 207s Selecting previously unselected package r-cran-matrixstats. 207s Preparing to unpack .../298-r-cran-matrixstats_1.2.0-1_amd64.deb ... 207s Unpacking r-cran-matrixstats (1.2.0-1) ... 207s Selecting previously unselected package r-bioc-matrixgenerics. 207s Preparing to unpack .../299-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 207s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 207s Selecting previously unselected package r-cran-abind. 207s Preparing to unpack .../300-r-cran-abind_1.4-5-2_all.deb ... 207s Unpacking r-cran-abind (1.4-5-2) ... 207s Selecting previously unselected package r-bioc-s4arrays. 207s Preparing to unpack .../301-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 207s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 207s Selecting previously unselected package r-bioc-sparsearray. 207s Preparing to unpack .../302-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 207s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 207s Selecting previously unselected package r-bioc-delayedarray. 207s Preparing to unpack .../303-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 207s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 207s Selecting previously unselected package r-bioc-summarizedexperiment. 207s Preparing to unpack .../304-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 207s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 207s Selecting previously unselected package r-bioc-rhtslib. 207s Preparing to unpack .../305-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 207s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 208s Selecting previously unselected package r-bioc-rsamtools. 208s Preparing to unpack .../306-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 208s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 208s Selecting previously unselected package r-bioc-genomicalignments. 208s Preparing to unpack .../307-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 208s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 208s Selecting previously unselected package r-cran-rjson. 208s Preparing to unpack .../308-r-cran-rjson_0.2.21-1_amd64.deb ... 208s Unpacking r-cran-rjson (0.2.21-1) ... 208s Selecting previously unselected package r-cran-restfulr. 208s Preparing to unpack .../309-r-cran-restfulr_0.0.15-1_amd64.deb ... 208s Unpacking r-cran-restfulr (0.0.15-1) ... 208s Selecting previously unselected package r-bioc-rtracklayer. 208s Preparing to unpack .../310-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 208s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 208s Selecting previously unselected package r-bioc-genomicfeatures. 208s Preparing to unpack .../311-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 208s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 208s Selecting previously unselected package r-bioc-bsgenome. 208s Preparing to unpack .../312-r-bioc-bsgenome_1.70.2-1_all.deb ... 208s Unpacking r-bioc-bsgenome (1.70.2-1) ... 208s Selecting previously unselected package r-bioc-variantannotation. 208s Preparing to unpack .../313-r-bioc-variantannotation_1.48.1-1_amd64.deb ... 208s Unpacking r-bioc-variantannotation (1.48.1-1) ... 208s Selecting previously unselected package r-bioc-protgenerics. 208s Preparing to unpack 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215s Setting up r-cran-rematch2 (2.1.2-2build1) ... 215s Setting up r-cran-rpart (4.1.23-1) ... 215s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 215s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 215s Setting up r-cran-fontawesome (0.5.2-1) ... 215s Setting up r-cran-latticeextra (0.6-30-1) ... 215s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 215s Setting up r-cran-viridis (0.6.5-1) ... 215s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 215s Setting up r-cran-waldo (0.5.2-1build1) ... 215s Setting up r-cran-tidyr (1.3.1-1) ... 215s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 215s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 215s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 215s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 215s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 215s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 215s Setting up r-bioc-annotationdbi (1.64.1-1) ... 215s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 215s Setting up r-cran-testthat (3.2.1-1) ... 215s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 215s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 215s Setting up r-bioc-genomicalignments (1.38.2-1) ... 215s Setting up r-cran-bookdown (0.37+dfsg-1) ... 215s Setting up r-bioc-rtracklayer (1.62.0-1) ... 215s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 215s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 215s Setting up r-bioc-bsgenome (1.70.2-1) ... 215s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 215s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 215s Setting up r-bioc-variantannotation (1.48.1-1) ... 215s Setting up r-cran-htmltable (2.4.2-1) ... 215s Setting up r-cran-hmisc (5.1-1-1) ... 215s Setting up r-bioc-biovizbase (1.50.0-1) ... 215s Setting up r-bioc-gviz (1.46.1+dfsg-1) ... 215s Processing triggers for libc-bin (2.39-0ubuntu2) ... 215s Processing triggers for man-db (2.12.0-3) ... 216s Processing triggers for install-info (7.1-3) ... 216s Processing triggers for tex-common (6.18) ... 217s Running updmap-sys. This may take some time... done. 217s Running mktexlsr /var/lib/texmf ... done. 217s Building format(s) --all. 247s This may take some time... done. 254s Reading package lists... 254s Building dependency tree... 254s Reading state information... 254s Starting pkgProblemResolver with broken count: 0 254s Starting 2 pkgProblemResolver with broken count: 0 254s Done 255s The following NEW packages will be installed: 255s autopkgtest-satdep 255s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 255s Need to get 0 B/696 B of archives. 255s After this operation, 0 B of additional disk space will be used. 255s Get:1 /tmp/autopkgtest.mocJhI/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 255s Selecting previously unselected package autopkgtest-satdep. 255s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 126179 files and directories currently installed.) 255s Preparing to unpack .../2-autopkgtest-satdep.deb ... 255s Unpacking autopkgtest-satdep (0) ... 255s Setting up autopkgtest-satdep (0) ... 257s (Reading database ... 126179 files and directories currently installed.) 257s Removing autopkgtest-satdep (0) ... 257s autopkgtest [13:09:26]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 257s autopkgtest [13:09:26]: test pkg-r-autopkgtest: [----------------------- 257s Test: Try to load the R library Gviz 257s 257s R version 4.3.2 (2023-10-31) -- "Eye Holes" 257s Copyright (C) 2023 The R Foundation for Statistical Computing 257s Platform: x86_64-pc-linux-gnu (64-bit) 257s 257s R is free software and comes with ABSOLUTELY NO WARRANTY. 257s You are welcome to redistribute it under certain conditions. 257s Type 'license()' or 'licence()' for distribution details. 257s 257s R is a collaborative project with many contributors. 257s Type 'contributors()' for more information and 257s 'citation()' on how to cite R or R packages in publications. 257s 257s Type 'demo()' for some demos, 'help()' for on-line help, or 257s 'help.start()' for an HTML browser interface to help. 257s Type 'q()' to quit R. 257s 257s > library('Gviz') 257s Loading required package: S4Vectors 257s Loading required package: stats4 258s Loading required package: BiocGenerics 258s 258s Attaching package: ‘BiocGenerics’ 258s 258s The following objects are masked from ‘package:stats’: 258s 258s IQR, mad, sd, var, xtabs 258s 258s The following objects are masked from ‘package:base’: 258s 258s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 258s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 258s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 258s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 258s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 258s table, tapply, union, unique, unsplit, which.max, which.min 258s 258s 258s Attaching package: ‘S4Vectors’ 258s 258s The following object is masked from ‘package:utils’: 258s 258s findMatches 258s 258s The following objects are masked from ‘package:base’: 258s 258s expand.grid, I, unname 258s 258s Loading required package: IRanges 259s Loading required package: GenomicRanges 259s Loading required package: GenomeInfoDb 260s Loading required package: grid 271s > 271s > 271s Other tests are currently unsupported! 271s They will be progressively added. 272s autopkgtest [13:09:41]: test pkg-r-autopkgtest: -----------------------] 272s pkg-r-autopkgtest PASS 272s autopkgtest [13:09:41]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 272s autopkgtest [13:09:41]: @@@@@@@@@@@@@@@@@@@@ summary 272s pkg-r-autopkgtest PASS 282s Creating nova instance adt-noble-i386-r-bioc-gviz-20240321-130509-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240320.img (UUID 3219a3f4-90ea-47d9-8dfb-3912f2ae9f95)...