0s autopkgtest [02:48:00]: starting date and time: 2024-03-22 02:48:00+0000
  0s autopkgtest [02:48:00]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [02:48:00]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.yf2fd9n5/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-gseabase --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-49.secgroup --name adt-noble-i386-r-bioc-gseabase-20240322-024800-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
511s autopkgtest [02:56:31]: testbed dpkg architecture: amd64
511s autopkgtest [02:56:31]: testbed apt version: 2.7.12
511s autopkgtest [02:56:31]: test architecture: i386
511s autopkgtest [02:56:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup
511s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
511s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3805 kB]
511s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB]
511s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
511s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB]
511s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB]
511s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB]
511s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B]
511s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B]
511s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB]
511s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B]
511s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4237 kB]
511s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1277 kB]
512s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B]
512s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB]
512s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB]
512s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B]
515s Fetched 11.3 MB in 1s (7801 kB/s)
515s Reading package lists...
517s Reading package lists...
517s Building dependency tree...
517s Reading state information...
517s Calculating upgrade...
517s The following packages will be upgraded:
517s   cloud-init fonts-ubuntu-console python3-markupsafe
517s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
517s Need to get 629 kB of archives.
517s After this operation, 11.3 kB disk space will be freed.
517s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB]
517s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB]
517s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB]
517s Preconfiguring packages ...
517s Fetched 629 kB in 0s (25.3 MB/s)
518s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
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(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71865 files and directories currently installed.)
518s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ...
518s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ...
518s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ...
518s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ...
518s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ...
518s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ...
518s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ...
518s Setting up cloud-init (24.1.2-0ubuntu1) ...
519s Setting up python3-markupsafe (2.1.5-1build1) ...
519s Processing triggers for man-db (2.12.0-3) ...
520s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
520s Reading package lists...
521s Building dependency tree...
521s Reading state information...
521s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
521s sh: Attempting to set up Debian/Ubuntu apt sources automatically
521s sh: Distribution appears to be Ubuntu
522s Reading package lists...
522s Building dependency tree...
522s Reading state information...
523s eatmydata is already the newest version (131-1).
523s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
523s Reading package lists...
523s Building dependency tree...
523s Reading state information...
523s dbus is already the newest version (1.14.10-4ubuntu1).
523s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
523s Reading package lists...
523s Building dependency tree...
523s Reading state information...
524s rng-tools-debian is already the newest version (2.4).
524s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
524s Reading package lists...
524s Building dependency tree...
524s Reading state information...
524s The following packages will be REMOVED:
524s   cloud-init* python3-configobj* python3-debconf*
524s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
524s After this operation, 3256 kB disk space will be freed.
525s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71864 files and directories currently installed.)
525s Removing cloud-init (24.1.2-0ubuntu1) ...
525s Removing python3-configobj (5.0.8-3) ...
525s Removing python3-debconf (1.5.86) ...
525s Processing triggers for man-db (2.12.0-3) ...
525s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71475 files and directories currently installed.)
525s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
526s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
526s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
526s invoke-rc.d: policy-rc.d denied execution of try-restart.
526s Reading package lists...
526s Building dependency tree...
526s Reading state information...
527s linux-generic is already the newest version (6.8.0-11.11+1).
527s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
527s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
527s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
527s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
529s Reading package lists...
529s Reading package lists...
529s Building dependency tree...
529s Reading state information...
529s Calculating upgrade...
530s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
530s Reading package lists...
530s Building dependency tree...
530s Reading state information...
530s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
530s autopkgtest [02:56:50]: rebooting testbed after setup commands that affected boot
551s autopkgtest [02:57:11]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024
551s autopkgtest [02:57:11]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-gseabase
552s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-gseabase 1.64.0+ds-1 (dsc) [2199 B]
552s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-gseabase 1.64.0+ds-1 (tar) [63.2 kB]
552s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-gseabase 1.64.0+ds-1 (diff) [14.0 kB]
552s gpgv: Signature made Thu Nov 30 16:58:02 2023 UTC
552s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
552s gpgv:                issuer "tille@debian.org"
552s gpgv: Can't check signature: No public key
552s dpkg-source: warning: cannot verify inline signature for ./r-bioc-gseabase_1.64.0+ds-1.dsc: no acceptable signature found
553s autopkgtest [02:57:13]: testing package r-bioc-gseabase version 1.64.0+ds-1
554s autopkgtest [02:57:14]: build not needed
555s autopkgtest [02:57:15]: test pkg-r-autopkgtest: preparing testbed
559s Note, using file '/tmp/autopkgtest.9eQ3Qm/1-autopkgtest-satdep.dsc' to get the build dependencies
559s Reading package lists...
559s Building dependency tree...
559s Reading state information...
559s Starting pkgProblemResolver with broken count: 0
559s Starting 2 pkgProblemResolver with broken count: 0
559s Done
560s The following NEW packages will be installed:
560s   build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu
560s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
560s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
560s   g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13
560s   gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13
560s   gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools
560s   javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev
560s   libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev
560s   libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev
560s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
560s   libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev
560s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
560s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
560s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
560s   libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr
560s   libjs-popper.js libjs-prettify libjs-sifter.js
560s   libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3
560s   liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3
560s   libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0
560s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0
560s   libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev
560s   libpotrace0 libptexenc1 libquadmath0 libreadline-dev libsharpyuv0 libsm6
560s   libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data
560s   libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7
560s   libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1
560s   libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass
560s   node-html5shiv node-normalize.css pandoc pandoc-data pkg-config
560s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate
560s   r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocstyle
560s   r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-go.db
560s   r-bioc-graph r-bioc-gseabase r-bioc-iranges r-bioc-keggrest
560s   r-bioc-org.hs.eg.db r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc
560s   r-cran-askpass r-cran-base64enc r-cran-biocmanager r-cran-bit r-cran-bit64
560s   r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-bslib
560s   r-cran-cachem r-cran-callr r-cran-cli r-cran-commonmark r-cran-cpp11
560s   r-cran-crayon r-cran-curl r-cran-dbi r-cran-desc r-cran-diffobj
560s   r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap
560s   r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools
560s   r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr
560s   r-cran-later r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise
560s   r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig
560s   r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise
560s   r-cran-processx r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs
560s   r-cran-rcpp r-cran-rcurl r-cran-rematch2 r-cran-rlang r-cran-rmarkdown
560s   r-cran-rprojroot r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny
560s   r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat
560s   r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-waldo
560s   r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml rpcsvc-proto
560s   t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries
560s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
560s 0 upgraded, 253 newly installed, 0 to remove and 0 not upgraded.
560s Need to get 464 MB of archives.
560s After this operation, 1603 MB of additional disk space will be used.
560s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB]
560s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB]
560s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB]
560s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB]
560s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB]
560s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB]
560s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB]
560s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB]
560s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB]
560s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB]
560s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B]
560s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
560s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
560s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB]
560s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB]
560s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB]
560s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB]
560s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB]
560s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB]
560s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB]
560s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB]
560s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB]
560s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB]
560s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB]
560s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB]
560s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB]
560s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
560s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
560s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB]
560s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB]
560s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB]
560s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
560s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
560s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
560s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB]
560s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
560s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
560s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB]
560s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB]
560s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB]
560s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
561s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
561s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB]
561s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
561s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB]
561s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB]
561s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB]
561s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB]
561s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B]
561s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B]
561s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB]
561s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B]
561s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB]
561s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB]
561s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB]
561s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB]
561s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB]
561s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB]
561s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB]
561s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB]
561s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B]
561s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB]
561s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB]
561s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB]
561s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB]
561s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB]
561s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB]
561s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
561s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB]
561s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB]
561s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB]
561s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB]
561s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
561s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
561s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
561s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
561s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
561s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
561s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB]
561s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
561s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
561s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
561s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
561s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
561s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
561s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
561s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
561s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
561s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
561s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
561s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB]
561s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB]
561s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB]
561s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB]
561s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB]
561s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB]
561s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB]
561s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB]
561s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB]
561s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB]
561s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB]
561s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB]
561s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B]
561s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB]
561s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB]
561s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B]
561s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB]
561s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB]
561s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB]
561s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB]
561s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB]
561s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB]
561s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB]
561s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB]
561s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB]
561s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB]
561s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB]
561s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB]
561s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB]
561s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB]
561s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB]
561s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB]
561s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB]
561s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B]
561s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB]
561s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB]
561s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB]
561s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB]
561s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB]
561s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB]
561s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB]
561s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB]
561s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB]
561s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
561s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB]
561s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB]
561s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B]
561s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
561s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
561s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB]
561s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB]
561s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB]
561s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB]
561s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB]
561s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B]
561s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB]
561s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B]
561s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
561s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
561s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB]
561s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB]
561s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB]
561s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB]
561s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB]
561s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB]
561s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB]
561s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB]
561s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB]
561s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
561s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
561s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB]
561s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB]
561s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB]
561s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB]
561s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
561s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB]
561s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB]
561s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB]
561s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB]
561s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB]
561s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB]
561s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB]
561s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB]
561s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB]
561s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB]
561s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
561s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB]
561s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
561s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB]
561s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB]
561s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB]
561s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
562s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
562s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB]
562s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB]
562s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB]
562s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB]
562s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB]
562s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB]
562s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB]
562s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB]
562s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB]
562s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB]
562s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB]
562s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB]
562s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB]
562s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB]
562s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB]
562s Get:199 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
562s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB]
562s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
562s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB]
562s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB]
562s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB]
562s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB]
562s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB]
562s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
562s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB]
562s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB]
562s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB]
562s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB]
562s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
562s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB]
562s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB]
562s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB]
562s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB]
562s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
562s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB]
562s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB]
562s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
562s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB]
562s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB]
562s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB]
562s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB]
562s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB]
562s Get:226 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB]
562s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB]
562s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB]
562s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB]
562s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB]
563s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB]
563s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-go.db all 3.18.0-1 [18.7 MB]
563s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-graph amd64 1.80.0-1 [1289 kB]
563s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-gseabase all 1.64.0+ds-1 [717 kB]
563s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB]
564s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB]
565s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB]
565s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB]
565s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB]
565s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB]
565s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB]
565s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB]
565s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
565s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
565s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB]
565s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB]
565s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB]
565s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
565s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB]
565s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB]
565s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-runit all 0.4.33-1 [377 kB]
565s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB]
565s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB]
565s Preconfiguring packages ...
566s Fetched 464 MB in 5s (96.9 MB/s)
566s Selecting previously unselected package libc-dev-bin.
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566s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ...
566s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
566s Selecting previously unselected package linux-libc-dev:amd64.
566s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ...
566s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ...
566s Selecting previously unselected package libcrypt-dev:amd64.
566s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ...
566s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ...
566s Selecting previously unselected package libtirpc-dev:amd64.
566s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ...
566s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
566s Selecting previously unselected package libnsl-dev:amd64.
566s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ...
566s Unpacking libnsl-dev:amd64 (1.3.0-3) ...
566s Selecting previously unselected package rpcsvc-proto.
566s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ...
566s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
566s Selecting previously unselected package libc6-dev:amd64.
566s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ...
566s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ...
566s Selecting previously unselected package libisl23:amd64.
566s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ...
566s Unpacking libisl23:amd64 (0.26-3) ...
566s Selecting previously unselected package libmpc3:amd64.
566s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ...
566s Unpacking libmpc3:amd64 (1.3.1-1) ...
566s Selecting previously unselected package cpp-13-x86-64-linux-gnu.
566s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
566s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
567s Selecting previously unselected package cpp-13.
567s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ...
567s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
567s Selecting previously unselected package cpp-x86-64-linux-gnu.
567s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
567s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
567s Selecting previously unselected package cpp.
567s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ...
567s Unpacking cpp (4:13.2.0-7ubuntu1) ...
567s Selecting previously unselected package libcc1-0:amd64.
567s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ...
567s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ...
567s Selecting previously unselected package libgomp1:amd64.
567s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ...
567s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ...
567s Selecting previously unselected package libitm1:amd64.
567s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ...
567s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ...
567s Selecting previously unselected package libatomic1:amd64.
567s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ...
567s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ...
567s Selecting previously unselected package libasan8:amd64.
567s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ...
567s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ...
567s Selecting previously unselected package liblsan0:amd64.
567s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ...
567s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ...
567s Selecting previously unselected package libtsan2:amd64.
567s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ...
567s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ...
567s Selecting previously unselected package libubsan1:amd64.
567s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ...
567s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ...
567s Selecting previously unselected package libhwasan0:amd64.
567s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ...
567s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ...
567s Selecting previously unselected package libquadmath0:amd64.
567s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ...
567s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ...
567s Selecting previously unselected package libgcc-13-dev:amd64.
567s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ...
567s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
567s Selecting previously unselected package gcc-13-x86-64-linux-gnu.
567s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
567s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
569s Selecting previously unselected package gcc-13.
569s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ...
569s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
569s Selecting previously unselected package gcc-x86-64-linux-gnu.
569s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
569s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
569s Selecting previously unselected package gcc.
569s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ...
569s Unpacking gcc (4:13.2.0-7ubuntu1) ...
569s Selecting previously unselected package libstdc++-13-dev:amd64.
569s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ...
569s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
569s Selecting previously unselected package g++-13-x86-64-linux-gnu.
569s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
569s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
569s Selecting previously unselected package g++-13.
569s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ...
569s Unpacking g++-13 (13.2.0-17ubuntu2) ...
569s Selecting previously unselected package g++-x86-64-linux-gnu.
569s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
569s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
569s Selecting previously unselected package g++.
569s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ...
569s Unpacking g++ (4:13.2.0-7ubuntu1) ...
569s Selecting previously unselected package build-essential.
569s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ...
569s Unpacking build-essential (12.10ubuntu1) ...
569s Selecting previously unselected package dctrl-tools.
569s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ...
569s Unpacking dctrl-tools (2.24-3build2) ...
569s Selecting previously unselected package fonts-dejavu-mono.
569s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ...
569s Unpacking fonts-dejavu-mono (2.37-8) ...
569s Selecting previously unselected package fonts-dejavu-core.
569s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ...
569s Unpacking fonts-dejavu-core (2.37-8) ...
569s Selecting previously unselected package fontconfig-config.
569s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ...
569s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
569s Selecting previously unselected package libfontconfig1:amd64.
569s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ...
569s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
569s Selecting previously unselected package fontconfig.
569s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ...
569s Unpacking fontconfig (2.15.0-1ubuntu1) ...
569s Selecting previously unselected package fonts-font-awesome.
569s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
569s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
569s Selecting previously unselected package fonts-glyphicons-halflings.
569s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
569s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
569s Selecting previously unselected package fonts-lmodern.
569s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ...
569s Unpacking fonts-lmodern (2.005-1) ...
569s Selecting previously unselected package fonts-mathjax.
569s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
569s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
569s Selecting previously unselected package libgfortran5:amd64.
569s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ...
569s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ...
569s Selecting previously unselected package libgfortran-13-dev:amd64.
569s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ...
569s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ...
569s Selecting previously unselected package gfortran-13-x86-64-linux-gnu.
569s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
569s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
570s Selecting previously unselected package gfortran-13.
570s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ...
570s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
570s Selecting previously unselected package gfortran-x86-64-linux-gnu.
570s Preparing to unpack .../048-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
570s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
570s Selecting previously unselected package gfortran.
570s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ...
570s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
570s Selecting previously unselected package icu-devtools.
570s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_amd64.deb ...
570s Unpacking icu-devtools (74.2-1ubuntu1) ...
570s Selecting previously unselected package javascript-common.
570s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ...
570s Unpacking javascript-common (11+nmu1) ...
570s Selecting previously unselected package libio-string-perl.
570s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ...
570s Unpacking libio-string-perl (1.08-4) ...
570s Selecting previously unselected package liblatex-tounicode-perl.
570s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ...
570s Unpacking liblatex-tounicode-perl (0.54-2) ...
570s Selecting previously unselected package libbibtex-parser-perl.
570s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ...
570s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ...
570s Selecting previously unselected package libblas3:amd64.
570s Preparing to unpack .../055-libblas3_3.12.0-3_amd64.deb ...
570s Unpacking libblas3:amd64 (3.12.0-3) ...
570s Selecting previously unselected package libblas-dev:amd64.
570s Preparing to unpack .../056-libblas-dev_3.12.0-3_amd64.deb ...
570s Unpacking libblas-dev:amd64 (3.12.0-3) ...
570s Selecting previously unselected package libbz2-dev:amd64.
570s Preparing to unpack .../057-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ...
570s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ...
570s Selecting previously unselected package libpixman-1-0:amd64.
570s Preparing to unpack .../058-libpixman-1-0_0.42.2-1_amd64.deb ...
570s Unpacking libpixman-1-0:amd64 (0.42.2-1) ...
570s Selecting previously unselected package libxcb-render0:amd64.
570s Preparing to unpack .../059-libxcb-render0_1.15-1_amd64.deb ...
570s Unpacking libxcb-render0:amd64 (1.15-1) ...
570s Selecting previously unselected package libxcb-shm0:amd64.
570s Preparing to unpack .../060-libxcb-shm0_1.15-1_amd64.deb ...
570s Unpacking libxcb-shm0:amd64 (1.15-1) ...
570s Selecting previously unselected package libxrender1:amd64.
570s Preparing to unpack .../061-libxrender1_1%3a0.9.10-1.1_amd64.deb ...
570s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ...
570s Selecting previously unselected package libcairo2:amd64.
570s Preparing to unpack .../062-libcairo2_1.18.0-1_amd64.deb ...
570s Unpacking libcairo2:amd64 (1.18.0-1) ...
570s Selecting previously unselected package libdatrie1:amd64.
570s Preparing to unpack .../063-libdatrie1_0.2.13-3_amd64.deb ...
570s Unpacking libdatrie1:amd64 (0.2.13-3) ...
570s Selecting previously unselected package libdeflate0:amd64.
570s Preparing to unpack .../064-libdeflate0_1.19-1_amd64.deb ...
570s Unpacking libdeflate0:amd64 (1.19-1) ...
570s Selecting previously unselected package libgraphite2-3:amd64.
570s Preparing to unpack .../065-libgraphite2-3_1.3.14-2_amd64.deb ...
570s Unpacking libgraphite2-3:amd64 (1.3.14-2) ...
570s Selecting previously unselected package libharfbuzz0b:amd64.
570s Preparing to unpack .../066-libharfbuzz0b_8.3.0-2_amd64.deb ...
570s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ...
570s Selecting previously unselected package x11-common.
570s Preparing to unpack .../067-x11-common_1%3a7.7+23ubuntu2_all.deb ...
570s Unpacking x11-common (1:7.7+23ubuntu2) ...
570s Selecting previously unselected package libice6:amd64.
570s Preparing to unpack .../068-libice6_2%3a1.0.10-1build2_amd64.deb ...
570s Unpacking libice6:amd64 (2:1.0.10-1build2) ...
570s Selecting previously unselected package libicu-dev:amd64.
570s Preparing to unpack .../069-libicu-dev_74.2-1ubuntu1_amd64.deb ...
570s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ...
571s Selecting previously unselected package libjpeg-turbo8:amd64.
571s Preparing to unpack .../070-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ...
571s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ...
571s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
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571s Selecting previously unselected package libjpeg8:amd64.
571s Preparing to unpack .../072-libjpeg8_8c-2ubuntu11_amd64.deb ...
571s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
571s Selecting previously unselected package libjpeg8-dev:amd64.
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571s Selecting previously unselected package libjpeg-dev:amd64.
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571s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ...
571s Selecting previously unselected package libjs-bootstrap.
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571s Selecting previously unselected package libjs-popper.js.
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571s Selecting previously unselected package libjs-d3.
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571s Selecting previously unselected package libjs-es5-shim.
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571s Selecting previously unselected package libjs-highlight.js.
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571s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ...
571s Selecting previously unselected package libjs-jquery.
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571s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
571s Selecting previously unselected package libjs-jquery-datatables.
571s Preparing to unpack .../082-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ...
571s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ...
571s Selecting previously unselected package libjs-sifter.js.
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571s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ...
571s Selecting previously unselected package libjs-microplugin.js.
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571s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ...
571s Selecting previously unselected package libjs-jquery-selectize.js.
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571s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
571s Selecting previously unselected package libjs-jquery-ui.
571s Preparing to unpack .../086-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
571s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
571s Selecting previously unselected package libjs-json.
571s Preparing to unpack .../087-libjs-json_0~20221030+~1.0.8-1_all.deb ...
571s Unpacking libjs-json (0~20221030+~1.0.8-1) ...
571s Selecting previously unselected package libjs-lunr.
571s Preparing to unpack .../088-libjs-lunr_2.3.9~dfsg-2_all.deb ...
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572s Selecting previously unselected package libkpathsea6:amd64.
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572s Selecting previously unselected package libthai-data.
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572s Selecting previously unselected package libpango-1.0-0:amd64.
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572s Selecting previously unselected package libpangocairo-1.0-0:amd64.
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572s Selecting previously unselected package libpng-dev:amd64.
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572s Selecting previously unselected package libpotrace0:amd64.
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573s Selecting previously unselected package libsm6:amd64.
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573s Selecting previously unselected package libtcl8.6:amd64.
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573s Selecting previously unselected package libtexlua53-5:amd64.
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573s Selecting previously unselected package libjbig0:amd64.
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573s Selecting previously unselected package libwebp7:amd64.
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573s Selecting previously unselected package libtiff6:amd64.
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573s Selecting previously unselected package libxft2:amd64.
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573s Selecting previously unselected package libxss1:amd64.
573s Preparing to unpack .../123-libxss1_1%3a1.2.3-1build2_amd64.deb ...
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573s Selecting previously unselected package libtk8.6:amd64.
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573s Selecting previously unselected package libxt6:amd64.
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573s Selecting previously unselected package libxmu6:amd64.
573s Preparing to unpack .../126-libxmu6_2%3a1.1.3-3_amd64.deb ...
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573s Selecting previously unselected package libxpm4:amd64.
573s Preparing to unpack .../127-libxpm4_1%3a3.5.17-1_amd64.deb ...
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573s Selecting previously unselected package libxaw7:amd64.
573s Preparing to unpack .../128-libxaw7_2%3a1.0.14-1_amd64.deb ...
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573s Selecting previously unselected package libxi6:amd64.
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573s Selecting previously unselected package libzzip-0-13:amd64.
573s Preparing to unpack .../130-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ...
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573s Selecting previously unselected package xdg-utils.
573s Preparing to unpack .../133-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
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573s Selecting previously unselected package r-base-core.
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574s Selecting previously unselected package r-cran-littler.
574s Preparing to unpack .../135-r-cran-littler_0.3.19-1_amd64.deb ...
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574s Selecting previously unselected package littler.
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574s Selecting previously unselected package node-bootstrap-sass.
574s Preparing to unpack .../137-node-bootstrap-sass_3.4.3-2_all.deb ...
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574s Selecting previously unselected package node-html5shiv.
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574s Selecting previously unselected package node-normalize.css.
574s Preparing to unpack .../139-node-normalize.css_8.0.1-5_all.deb ...
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574s Selecting previously unselected package pandoc-data.
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574s Selecting previously unselected package pandoc.
574s Preparing to unpack .../141-pandoc_3.1.3+ds-2_amd64.deb ...
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575s Selecting previously unselected package pkgconf-bin.
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575s Selecting previously unselected package pkgconf:amd64.
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575s Selecting previously unselected package pkg-config:amd64.
575s Preparing to unpack .../144-pkg-config_1.8.1-2_amd64.deb ...
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575s Selecting previously unselected package liblzma-dev:amd64.
575s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_amd64.deb ...
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575s Selecting previously unselected package r-base-dev.
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575s Selecting previously unselected package pkg-r-autopkgtest.
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575s Selecting previously unselected package r-bioc-biocgenerics.
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575s Selecting previously unselected package r-bioc-biobase.
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575s Selecting previously unselected package r-bioc-s4vectors.
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575s Selecting previously unselected package r-bioc-iranges.
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575s Selecting previously unselected package r-cran-dbi.
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575s Selecting previously unselected package r-cran-bit.
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575s Selecting previously unselected package r-cran-bit64.
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575s Selecting previously unselected package r-cran-rlang.
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575s Selecting previously unselected package r-cran-cli.
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575s Selecting previously unselected package r-cran-glue.
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575s Selecting previously unselected package r-cran-lifecycle.
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575s Selecting previously unselected package r-cran-vctrs.
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575s Selecting previously unselected package r-cran-blob.
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575s Selecting previously unselected package r-cran-fastmap.
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575s Selecting previously unselected package r-cran-cachem.
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576s Selecting previously unselected package r-cran-memoise.
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576s Selecting previously unselected package r-cran-pkgconfig.
576s Preparing to unpack .../164-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
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576s Selecting previously unselected package r-cran-plogr.
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576s Selecting previously unselected package r-cran-cpp11.
576s Preparing to unpack .../166-r-cran-cpp11_0.4.7-1_all.deb ...
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576s Selecting previously unselected package r-cran-rsqlite.
576s Preparing to unpack .../167-r-cran-rsqlite_2.3.4-1_amd64.deb ...
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576s Selecting previously unselected package r-cran-curl.
576s Preparing to unpack .../168-r-cran-curl_5.2.0+dfsg-1_amd64.deb ...
576s Unpacking r-cran-curl (5.2.0+dfsg-1) ...
576s Selecting previously unselected package r-cran-jsonlite.
576s Preparing to unpack .../169-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ...
576s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ...
576s Selecting previously unselected package r-cran-mime.
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576s Unpacking r-cran-mime (0.12-1) ...
576s Selecting previously unselected package r-cran-sys.
576s Preparing to unpack .../171-r-cran-sys_3.4.2-1_amd64.deb ...
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576s Selecting previously unselected package r-cran-askpass.
576s Preparing to unpack .../172-r-cran-askpass_1.2.0-1_amd64.deb ...
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576s Selecting previously unselected package r-cran-openssl.
576s Preparing to unpack .../173-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ...
576s Unpacking r-cran-openssl (2.1.1+dfsg-2) ...
576s Selecting previously unselected package r-cran-r6.
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576s Selecting previously unselected package r-cran-httr.
576s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ...
576s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
576s Selecting previously unselected package r-cran-png.
576s Preparing to unpack .../176-r-cran-png_0.1-8-1_amd64.deb ...
576s Unpacking r-cran-png (0.1-8-1) ...
576s Selecting previously unselected package r-bioc-zlibbioc.
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576s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ...
576s Selecting previously unselected package r-bioc-xvector.
576s Preparing to unpack .../178-r-bioc-xvector_0.42.0-1_amd64.deb ...
576s Unpacking r-bioc-xvector (0.42.0-1) ...
576s Selecting previously unselected package r-cran-bitops.
576s Preparing to unpack .../179-r-cran-bitops_1.0-7-1_amd64.deb ...
576s Unpacking r-cran-bitops (1.0-7-1) ...
576s Selecting previously unselected package r-cran-rcurl.
576s Preparing to unpack .../180-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ...
576s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ...
576s Selecting previously unselected package r-bioc-genomeinfodbdata.
576s Preparing to unpack .../181-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ...
576s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ...
576s Selecting previously unselected package r-bioc-genomeinfodb.
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576s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
576s Selecting previously unselected package r-cran-crayon.
576s Preparing to unpack .../183-r-cran-crayon_1.5.2-1_all.deb ...
576s Unpacking r-cran-crayon (1.5.2-1) ...
576s Selecting previously unselected package r-bioc-biostrings.
576s Preparing to unpack .../184-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ...
576s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ...
577s Selecting previously unselected package r-bioc-keggrest.
577s Preparing to unpack .../185-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ...
577s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ...
577s Selecting previously unselected package r-bioc-annotationdbi.
577s Preparing to unpack .../186-r-bioc-annotationdbi_1.64.1-1_all.deb ...
577s Unpacking r-bioc-annotationdbi (1.64.1-1) ...
577s Selecting previously unselected package r-cran-xml.
577s Preparing to unpack .../187-r-cran-xml_3.99-0.16.1-1_amd64.deb ...
577s Unpacking r-cran-xml (3.99-0.16.1-1) ...
577s Selecting previously unselected package r-cran-xtable.
577s Preparing to unpack .../188-r-cran-xtable_1%3a1.8-4-2_all.deb ...
577s Unpacking r-cran-xtable (1:1.8-4-2) ...
577s Selecting previously unselected package r-bioc-annotate.
577s Preparing to unpack .../189-r-bioc-annotate_1.80.0+dfsg-1_all.deb ...
577s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ...
577s Selecting previously unselected package r-cran-base64enc.
577s Preparing to unpack .../190-r-cran-base64enc_0.1-3-3_amd64.deb ...
577s Unpacking r-cran-base64enc (0.1-3-3) ...
577s Selecting previously unselected package r-cran-digest.
577s Preparing to unpack .../191-r-cran-digest_0.6.34-1_amd64.deb ...
577s Unpacking r-cran-digest (0.6.34-1) ...
577s Selecting previously unselected package r-cran-ellipsis.
577s Preparing to unpack .../192-r-cran-ellipsis_0.3.2-2_amd64.deb ...
577s Unpacking r-cran-ellipsis (0.3.2-2) ...
577s Selecting previously unselected package r-cran-htmltools.
577s Preparing to unpack .../193-r-cran-htmltools_0.5.7-1_amd64.deb ...
577s Unpacking r-cran-htmltools (0.5.7-1) ...
577s Selecting previously unselected package r-cran-evaluate.
577s Preparing to unpack .../194-r-cran-evaluate_0.23-1_all.deb ...
577s Unpacking r-cran-evaluate (0.23-1) ...
577s Selecting previously unselected package r-cran-xfun.
577s Preparing to unpack .../195-r-cran-xfun_0.41+dfsg-1_amd64.deb ...
577s Unpacking r-cran-xfun (0.41+dfsg-1) ...
577s Selecting previously unselected package r-cran-highr.
577s Preparing to unpack .../196-r-cran-highr_0.10+dfsg-1_all.deb ...
577s Unpacking r-cran-highr (0.10+dfsg-1) ...
577s Selecting previously unselected package r-cran-yaml.
577s Preparing to unpack .../197-r-cran-yaml_2.3.8-1_amd64.deb ...
577s Unpacking r-cran-yaml (2.3.8-1) ...
577s Selecting previously unselected package libjs-mathjax.
577s Preparing to unpack .../198-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
577s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
578s Selecting previously unselected package r-cran-knitr.
578s Preparing to unpack .../199-r-cran-knitr_1.45+dfsg-1_all.deb ...
578s Unpacking r-cran-knitr (1.45+dfsg-1) ...
578s Selecting previously unselected package r-cran-jquerylib.
578s Preparing to unpack .../200-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
578s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
578s Selecting previously unselected package r-cran-fs.
578s Preparing to unpack .../201-r-cran-fs_1.6.3+dfsg-1_amd64.deb ...
578s Unpacking r-cran-fs (1.6.3+dfsg-1) ...
578s Selecting previously unselected package r-cran-rappdirs.
578s Preparing to unpack .../202-r-cran-rappdirs_0.3.3-1_amd64.deb ...
578s Unpacking r-cran-rappdirs (0.3.3-1) ...
578s Selecting previously unselected package r-cran-sass.
578s Preparing to unpack .../203-r-cran-sass_0.4.8+dfsg-1_amd64.deb ...
578s Unpacking r-cran-sass (0.4.8+dfsg-1) ...
578s Selecting previously unselected package r-cran-bslib.
578s Preparing to unpack .../204-r-cran-bslib_0.6.1+dfsg-1_all.deb ...
578s Unpacking r-cran-bslib (0.6.1+dfsg-1) ...
578s Selecting previously unselected package r-cran-fontawesome.
578s Preparing to unpack .../205-r-cran-fontawesome_0.5.2-1_all.deb ...
578s Unpacking r-cran-fontawesome (0.5.2-1) ...
578s Selecting previously unselected package r-cran-magrittr.
578s Preparing to unpack .../206-r-cran-magrittr_2.0.3-1_amd64.deb ...
578s Unpacking r-cran-magrittr (2.0.3-1) ...
578s Selecting previously unselected package r-cran-stringi.
578s Preparing to unpack .../207-r-cran-stringi_1.8.3-1_amd64.deb ...
578s Unpacking r-cran-stringi (1.8.3-1) ...
578s Selecting previously unselected package r-cran-stringr.
578s Preparing to unpack .../208-r-cran-stringr_1.5.1-1_all.deb ...
578s Unpacking r-cran-stringr (1.5.1-1) ...
578s Selecting previously unselected package r-cran-tinytex.
579s Preparing to unpack .../209-r-cran-tinytex_0.49-1_all.deb ...
579s Unpacking r-cran-tinytex (0.49-1) ...
579s Selecting previously unselected package libjs-modernizr.
579s Preparing to unpack .../210-libjs-modernizr_2.6.2+ds1-5_all.deb ...
579s Unpacking libjs-modernizr (2.6.2+ds1-5) ...
579s Selecting previously unselected package r-cran-pkgkitten.
579s Preparing to unpack .../211-r-cran-pkgkitten_0.2.3-1_all.deb ...
579s Unpacking r-cran-pkgkitten (0.2.3-1) ...
579s Selecting previously unselected package r-cran-rcpp.
579s Preparing to unpack .../212-r-cran-rcpp_1.0.12-1_amd64.deb ...
579s Unpacking r-cran-rcpp (1.0.12-1) ...
579s Selecting previously unselected package r-cran-later.
579s Preparing to unpack .../213-r-cran-later_1.3.2+dfsg-1_amd64.deb ...
579s Unpacking r-cran-later (1.3.2+dfsg-1) ...
579s Selecting previously unselected package r-cran-promises.
579s Preparing to unpack .../214-r-cran-promises_1.2.1+dfsg-1_amd64.deb ...
579s Unpacking r-cran-promises (1.2.1+dfsg-1) ...
579s Selecting previously unselected package r-cran-httpuv.
579s Preparing to unpack .../215-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ...
579s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ...
579s Selecting previously unselected package r-cran-sourcetools.
579s Preparing to unpack .../216-r-cran-sourcetools_0.1.7-1-1_amd64.deb ...
579s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
579s Selecting previously unselected package r-cran-withr.
579s Preparing to unpack .../217-r-cran-withr_2.5.0-1_all.deb ...
579s Unpacking r-cran-withr (2.5.0-1) ...
579s Selecting previously unselected package r-cran-commonmark.
579s Preparing to unpack .../218-r-cran-commonmark_1.9.1-1_amd64.deb ...
579s Unpacking r-cran-commonmark (1.9.1-1) ...
579s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
579s Preparing to unpack .../219-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
579s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
579s Selecting previously unselected package r-cran-shiny.
579s Preparing to unpack .../220-r-cran-shiny_1.8.0+dfsg-1_all.deb ...
579s Unpacking r-cran-shiny (1.8.0+dfsg-1) ...
579s Selecting previously unselected package r-cran-rmarkdown.
579s Preparing to unpack .../221-r-cran-rmarkdown_2.25+dfsg-3_all.deb ...
579s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ...
579s Selecting previously unselected package r-cran-bookdown.
579s Preparing to unpack .../222-r-cran-bookdown_0.37+dfsg-1_all.deb ...
579s Unpacking r-cran-bookdown (0.37+dfsg-1) ...
579s Selecting previously unselected package r-cran-biocmanager.
579s Preparing to unpack .../223-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ...
579s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ...
579s Selecting previously unselected package tex-common.
579s Preparing to unpack .../224-tex-common_6.18_all.deb ...
579s Unpacking tex-common (6.18) ...
579s Selecting previously unselected package t1utils.
579s Preparing to unpack .../225-t1utils_1.41-4build2_amd64.deb ...
579s Unpacking t1utils (1.41-4build2) ...
579s Selecting previously unselected package texlive-binaries.
579s Preparing to unpack .../226-texlive-binaries_2023.20230311.66589-9_amd64.deb ...
579s Unpacking texlive-binaries (2023.20230311.66589-9) ...
580s Selecting previously unselected package texlive-base.
580s Preparing to unpack .../227-texlive-base_2023.20240207-1_all.deb ...
580s Unpacking texlive-base (2023.20240207-1) ...
581s Selecting previously unselected package texlive-latex-base.
581s Preparing to unpack .../228-texlive-latex-base_2023.20240207-1_all.deb ...
581s Unpacking texlive-latex-base (2023.20240207-1) ...
582s Selecting previously unselected package texlive-bibtex-extra.
582s Preparing to unpack .../229-texlive-bibtex-extra_2023.20240207-1_all.deb ...
582s Unpacking texlive-bibtex-extra (2023.20240207-1) ...
586s Selecting previously unselected package r-bioc-biocstyle.
586s Preparing to unpack .../230-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ...
586s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ...
586s Selecting previously unselected package r-bioc-go.db.
586s Preparing to unpack .../231-r-bioc-go.db_3.18.0-1_all.deb ...
586s Unpacking r-bioc-go.db (3.18.0-1) ...
586s Selecting previously unselected package r-bioc-graph.
586s Preparing to unpack .../232-r-bioc-graph_1.80.0-1_amd64.deb ...
586s Unpacking r-bioc-graph (1.80.0-1) ...
586s Selecting previously unselected package r-bioc-gseabase.
586s Preparing to unpack .../233-r-bioc-gseabase_1.64.0+ds-1_all.deb ...
586s Unpacking r-bioc-gseabase (1.64.0+ds-1) ...
586s Selecting previously unselected package r-bioc-org.hs.eg.db.
586s Preparing to unpack .../234-r-bioc-org.hs.eg.db_3.18.0-1_all.deb ...
586s Unpacking r-bioc-org.hs.eg.db (3.18.0-1) ...
587s Selecting previously unselected package r-cran-brio.
587s Preparing to unpack .../235-r-cran-brio_1.1.4-1_amd64.deb ...
587s Unpacking r-cran-brio (1.1.4-1) ...
587s Selecting previously unselected package r-cran-ps.
587s Preparing to unpack .../236-r-cran-ps_1.7.6-1_amd64.deb ...
587s Unpacking r-cran-ps (1.7.6-1) ...
587s Selecting previously unselected package r-cran-processx.
587s Preparing to unpack .../237-r-cran-processx_3.8.3-1_amd64.deb ...
587s Unpacking r-cran-processx (3.8.3-1) ...
587s Selecting previously unselected package r-cran-callr.
587s Preparing to unpack .../238-r-cran-callr_3.7.3-2_all.deb ...
587s Unpacking r-cran-callr (3.7.3-2) ...
588s Selecting previously unselected package r-cran-desc.
588s Preparing to unpack .../239-r-cran-desc_1.4.3-1_all.deb ...
588s Unpacking r-cran-desc (1.4.3-1) ...
588s Selecting previously unselected package r-cran-diffobj.
588s Preparing to unpack .../240-r-cran-diffobj_0.3.5-1_amd64.deb ...
588s Unpacking r-cran-diffobj (0.3.5-1) ...
588s Selecting previously unselected package r-cran-fansi.
588s Preparing to unpack .../241-r-cran-fansi_1.0.5-1_amd64.deb ...
588s Unpacking r-cran-fansi (1.0.5-1) ...
588s Selecting previously unselected package r-cran-utf8.
588s Preparing to unpack .../242-r-cran-utf8_1.2.4-1_amd64.deb ...
588s Unpacking r-cran-utf8 (1.2.4-1) ...
588s Selecting previously unselected package r-cran-pillar.
588s Preparing to unpack .../243-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
588s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
588s Selecting previously unselected package r-cran-pkgbuild.
588s Preparing to unpack .../244-r-cran-pkgbuild_1.4.3-1_all.deb ...
588s Unpacking r-cran-pkgbuild (1.4.3-1) ...
588s Selecting previously unselected package r-cran-rprojroot.
588s Preparing to unpack .../245-r-cran-rprojroot_2.0.4-1_all.deb ...
588s Unpacking r-cran-rprojroot (2.0.4-1) ...
588s Selecting previously unselected package r-cran-pkgload.
588s Preparing to unpack .../246-r-cran-pkgload_1.3.4-1_all.deb ...
588s Unpacking r-cran-pkgload (1.3.4-1) ...
588s Selecting previously unselected package r-cran-praise.
588s Preparing to unpack .../247-r-cran-praise_1.0.0-4build1_all.deb ...
588s Unpacking r-cran-praise (1.0.0-4build1) ...
588s Selecting previously unselected package r-cran-tibble.
588s Preparing to unpack .../248-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ...
588s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
588s Selecting previously unselected package r-cran-rematch2.
588s Preparing to unpack .../249-r-cran-rematch2_2.1.2-2build1_all.deb ...
588s Unpacking r-cran-rematch2 (2.1.2-2build1) ...
588s Selecting previously unselected package r-cran-runit.
588s Preparing to unpack .../250-r-cran-runit_0.4.33-1_all.deb ...
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588s Selecting previously unselected package r-cran-waldo.
588s Preparing to unpack .../251-r-cran-waldo_0.5.2-1build1_all.deb ...
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588s Selecting previously unselected package r-cran-testthat.
588s Preparing to unpack .../252-r-cran-testthat_3.2.1-1_amd64.deb ...
588s Unpacking r-cran-testthat (3.2.1-1) ...
588s Setting up libjs-json (0~20221030+~1.0.8-1) ...
588s Setting up javascript-common (11+nmu1) ...
588s Setting up libgraphite2-3:amd64 (1.3.14-2) ...
588s Setting up libpixman-1-0:amd64 (0.42.2-1) ...
588s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ...
588s Setting up libpaper1:amd64 (1.1.29) ...
588s 
588s Creating config file /etc/papersize with new version
588s Setting up fonts-mathjax (2.7.9+dfsg-1) ...
588s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ...
588s Setting up libxpm4:amd64 (1:3.5.17-1) ...
588s Setting up libjs-mathjax (2.7.9+dfsg-1) ...
588s Setting up libxi6:amd64 (2:1.8.1-1) ...
588s Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
588s Setting up libdatrie1:amd64 (0.2.13-3) ...
588s Setting up libjs-popper.js (1.16.1+ds-6) ...
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588s Setting up libjs-sifter.js (0.6.0+dfsg-3) ...
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588s Setting up libjs-lunr (2.3.9~dfsg-2) ...
588s Setting up unzip (6.0-28ubuntu3) ...
588s Setting up liblatex-tounicode-perl (0.54-2) ...
588s Setting up x11-common (1:7.7+23ubuntu2) ...
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589s Setting up libdeflate0:amd64 (1.19-1) ...
589s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ...
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589s Setting up libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ...
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589s Setting up libjs-modernizr (2.6.2+ds1-5) ...
589s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ...
589s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ...
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589s Setting up libblas3:amd64 (3.12.0-3) ...
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589s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
589s Setting up libbibtex-parser-perl (1.04+dfsg-1) ...
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589s Setting up pkgconf:amd64 (1.8.1-2) ...
589s Setting up libthai0:amd64 (0.1.29-2) ...
589s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
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589s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ...
589s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ...
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589s Setting up libsm6:amd64 (2:1.2.3-1build2) ...
589s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ...
589s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
589s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ...
589s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
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591s Setting up libxft2:amd64 (2.3.6-1) ...
591s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ...
591s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ...
591s Setting up cpp-13 (13.2.0-17ubuntu2) ...
591s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
591s Setting up libtk8.6:amd64 (8.6.13-2) ...
591s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ...
591s Setting up libreadline-dev:amd64 (8.2-3) ...
591s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
591s Setting up libcairo2:amd64 (1.18.0-1) ...
591s Setting up gcc-13 (13.2.0-17ubuntu2) ...
591s Setting up libxt6:amd64 (1:1.2.1-1.1) ...
591s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ...
591s Setting up cpp (4:13.2.0-7ubuntu1) ...
591s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ...
591s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ...
591s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ...
591s Setting up libxmu6:amd64 (2:1.1.3-3) ...
591s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
591s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
591s Setting up libpng-dev:amd64 (1.6.43-1) ...
591s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
591s Setting up libxaw7:amd64 (2:1.0.14-1) ...
591s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
591s Setting up gcc (4:13.2.0-7ubuntu1) ...
591s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
591s Setting up r-base-core (4.3.2-1build1) ...
592s 
592s Creating config file /etc/R/Renviron with new version
592s Setting up r-cran-crayon (1.5.2-1) ...
592s Setting up r-cran-sourcetools (0.1.7-1-1) ...
592s Setting up r-cran-ps (1.7.6-1) ...
592s Setting up r-cran-xml (3.99-0.16.1-1) ...
592s Setting up texlive-binaries (2023.20230311.66589-9) ...
592s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
592s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
592s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
592s Setting up r-cran-commonmark (1.9.1-1) ...
592s Setting up r-cran-r6 (2.5.1-1) ...
592s Setting up r-cran-pkgkitten (0.2.3-1) ...
592s Setting up texlive-base (2023.20240207-1) ...
592s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
593s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
593s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
593s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
594s Setting up r-cran-magrittr (2.0.3-1) ...
594s Setting up r-cran-rappdirs (0.3.3-1) ...
594s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
594s Setting up r-cran-littler (0.3.19-1) ...
594s Setting up r-cran-fs (1.6.3+dfsg-1) ...
594s Setting up r-cran-rcpp (1.0.12-1) ...
594s Setting up r-cran-curl (5.2.0+dfsg-1) ...
594s Setting up g++-13 (13.2.0-17ubuntu2) ...
594s Setting up r-cran-brio (1.1.4-1) ...
594s Setting up r-cran-diffobj (0.3.5-1) ...
594s Setting up r-bioc-biocgenerics (0.48.1-2) ...
594s Setting up r-cran-rlang (1.1.3-1) ...
594s Setting up littler (0.3.19-1) ...
594s Setting up r-cran-xfun (0.41+dfsg-1) ...
594s Setting up r-cran-sys (3.4.2-1) ...
594s Setting up r-cran-plogr (0.2.0-3build1) ...
594s Setting up r-cran-withr (2.5.0-1) ...
594s Setting up r-cran-processx (3.8.3-1) ...
594s Setting up r-cran-mime (0.12-1) ...
594s Setting up r-cran-praise (1.0.0-4build1) ...
594s Setting up r-cran-base64enc (0.1-3-3) ...
594s Setting up r-cran-digest (0.6.34-1) ...
594s Setting up r-cran-yaml (2.3.8-1) ...
594s Setting up r-cran-evaluate (0.23-1) ...
594s Setting up r-cran-dbi (1.2.2-1) ...
594s Setting up r-cran-highr (0.10+dfsg-1) ...
594s Setting up r-cran-fansi (1.0.5-1) ...
594s Setting up r-cran-glue (1.7.0-1) ...
594s Setting up r-cran-bit (4.0.5-1) ...
594s Setting up r-cran-xtable (1:1.8-4-2) ...
594s Setting up r-cran-cli (3.6.2-1) ...
594s Setting up gfortran (4:13.2.0-7ubuntu1) ...
594s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
594s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
594s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
594s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
594s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
594s Setting up r-cran-bitops (1.0-7-1) ...
594s Setting up r-cran-rprojroot (2.0.4-1) ...
594s Setting up r-cran-bit64 (4.0.5-1) ...
594s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ...
594s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
594s Setting up r-cran-askpass (1.2.0-1) ...
594s Setting up r-cran-fastmap (1.1.1-1) ...
594s Setting up r-cran-png (0.1-8-1) ...
594s Setting up r-bioc-biobase (2.62.0-1) ...
594s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
594s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
594s Setting up r-cran-utf8 (1.2.4-1) ...
594s Setting up r-cran-stringi (1.8.3-1) ...
594s Setting up texlive-latex-base (2023.20240207-1) ...
594s Setting up r-cran-cpp11 (0.4.7-1) ...
594s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
594s Setting up r-cran-runit (0.4.33-1) ...
594s Setting up r-cran-later (1.3.2+dfsg-1) ...
594s Setting up r-cran-tinytex (0.49-1) ...
594s Setting up r-cran-knitr (1.45+dfsg-1) ...
594s Setting up g++ (4:13.2.0-7ubuntu1) ...
594s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
594s Setting up r-cran-cachem (1.0.8-1) ...
594s Setting up build-essential (12.10ubuntu1) ...
594s Setting up r-bioc-iranges (2.36.0-1) ...
594s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ...
594s Setting up r-cran-vctrs (0.6.5-1) ...
594s Setting up r-bioc-graph (1.80.0-1) ...
594s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
594s Setting up r-cran-ellipsis (0.3.2-2) ...
594s Setting up r-cran-openssl (2.1.1+dfsg-2) ...
594s Setting up r-base-dev (4.3.2-1build1) ...
594s Setting up r-cran-stringr (1.5.1-1) ...
594s Setting up r-cran-callr (3.7.3-2) ...
594s Setting up r-cran-desc (1.4.3-1) ...
594s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
594s Setting up texlive-bibtex-extra (2023.20240207-1) ...
594s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
594s Setting up r-cran-httr (1.4.7+dfsg-1) ...
594s Setting up r-cran-memoise (2.0.1-1) ...
594s Setting up r-cran-promises (1.2.1+dfsg-1) ...
594s Setting up r-cran-blob (1.2.4-1) ...
594s Setting up r-cran-htmltools (0.5.7-1) ...
594s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
594s Setting up r-bioc-xvector (0.42.0-1) ...
594s Setting up r-cran-pkgbuild (1.4.3-1) ...
594s Setting up r-cran-sass (0.4.8+dfsg-1) ...
594s Setting up r-cran-rsqlite (2.3.4-1) ...
594s Setting up r-cran-pkgload (1.3.4-1) ...
594s Setting up r-cran-httpuv (1.6.14+dfsg-1) ...
594s Setting up r-cran-rematch2 (2.1.2-2build1) ...
594s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ...
594s Setting up r-cran-fontawesome (0.5.2-1) ...
594s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
594s Setting up r-cran-bslib (0.6.1+dfsg-1) ...
594s Setting up r-cran-waldo (0.5.2-1build1) ...
594s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ...
594s Setting up r-bioc-annotationdbi (1.64.1-1) ...
594s Setting up r-bioc-go.db (3.18.0-1) ...
594s Setting up r-cran-shiny (1.8.0+dfsg-1) ...
594s Setting up r-cran-testthat (3.2.1-1) ...
594s Setting up r-bioc-annotate (1.80.0+dfsg-1) ...
594s Setting up r-cran-rmarkdown (2.25+dfsg-3) ...
594s Setting up r-cran-bookdown (0.37+dfsg-1) ...
594s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ...
594s Setting up r-bioc-gseabase (1.64.0+ds-1) ...
594s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ...
594s Processing triggers for libc-bin (2.39-0ubuntu2) ...
594s Processing triggers for man-db (2.12.0-3) ...
595s Processing triggers for install-info (7.1-3) ...
595s Processing triggers for tex-common (6.18) ...
596s Running updmap-sys. This may take some time... done.
596s Running mktexlsr /var/lib/texmf ... done.
596s Building format(s) --all.
626s 	This may take some time... done.
635s Reading package lists...
635s Building dependency tree...
635s Reading state information...
635s Starting pkgProblemResolver with broken count: 0
635s Starting 2 pkgProblemResolver with broken count: 0
636s Done
636s The following NEW packages will be installed:
636s   autopkgtest-satdep
636s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
636s Need to get 0 B/696 B of archives.
636s After this operation, 0 B of additional disk space will be used.
636s Get:1 /tmp/autopkgtest.9eQ3Qm/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B]
636s Selecting previously unselected package autopkgtest-satdep.
636s (Reading database ... 
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636s Preparing to unpack .../2-autopkgtest-satdep.deb ...
636s Unpacking autopkgtest-satdep (0) ...
636s Setting up autopkgtest-satdep (0) ...
640s (Reading database ... 102675 files and directories currently installed.)
640s Removing autopkgtest-satdep (0) ...
640s autopkgtest [02:58:40]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
640s autopkgtest [02:58:40]: test pkg-r-autopkgtest: [-----------------------
640s Test: Try to load the R library GSEABase
640s 
640s R version 4.3.2 (2023-10-31) -- "Eye Holes"
640s Copyright (C) 2023 The R Foundation for Statistical Computing
640s Platform: x86_64-pc-linux-gnu (64-bit)
640s 
640s R is free software and comes with ABSOLUTELY NO WARRANTY.
640s You are welcome to redistribute it under certain conditions.
640s Type 'license()' or 'licence()' for distribution details.
640s 
640s R is a collaborative project with many contributors.
640s Type 'contributors()' for more information and
640s 'citation()' on how to cite R or R packages in publications.
640s 
640s Type 'demo()' for some demos, 'help()' for on-line help, or
640s 'help.start()' for an HTML browser interface to help.
640s Type 'q()' to quit R.
640s 
640s > library('GSEABase')
640s Loading required package: BiocGenerics
640s 
640s Attaching package: ‘BiocGenerics’
640s 
640s The following objects are masked from ‘package:stats’:
640s 
640s     IQR, mad, sd, var, xtabs
640s 
640s The following objects are masked from ‘package:base’:
640s 
640s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
640s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
640s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
640s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
640s     Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort,
640s     table, tapply, union, unique, unsplit, which.max, which.min
640s 
640s Loading required package: Biobase
640s Welcome to Bioconductor
640s 
640s     Vignettes contain introductory material; view with
640s     'browseVignettes()'. To cite Bioconductor, see
640s     'citation("Biobase")', and for packages 'citation("pkgname")'.
640s 
640s Loading required package: annotate
640s Loading required package: AnnotationDbi
640s Loading required package: stats4
641s Loading required package: IRanges
641s Loading required package: S4Vectors
641s 
641s Attaching package: ‘S4Vectors’
641s 
641s The following object is masked from ‘package:utils’:
641s 
641s     findMatches
641s 
641s The following objects are masked from ‘package:base’:
641s 
641s     expand.grid, I, unname
641s 
643s Loading required package: XML
643s Loading required package: graph
644s 
644s Attaching package: ‘graph’
644s 
644s The following object is masked from ‘package:XML’:
644s 
644s     addNode
644s 
644s > 
644s > 
644s Other tests are currently unsupported!
644s They will be progressively added.
644s autopkgtest [02:58:44]: test pkg-r-autopkgtest: -----------------------]
644s autopkgtest [02:58:44]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
644s pkg-r-autopkgtest    PASS
644s autopkgtest [02:58:44]: @@@@@@@@@@@@@@@@@@@@ summary
644s pkg-r-autopkgtest    PASS
655s Creating nova instance adt-noble-i386-r-bioc-gseabase-20240322-024800-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...