0s autopkgtest [02:46:39]: starting date and time: 2024-03-22 02:46:39+0000 0s autopkgtest [02:46:39]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [02:46:39]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.hbk7q7y5/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-goseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-43.secgroup --name adt-noble-i386-r-bioc-goseq-20240322-024639-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 650s autopkgtest [02:57:29]: testbed dpkg architecture: amd64 651s autopkgtest [02:57:30]: testbed apt version: 2.7.12 651s autopkgtest [02:57:30]: test architecture: i386 651s autopkgtest [02:57:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 651s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 651s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 651s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 651s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 651s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3805 kB] 651s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB] 651s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB] 651s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 651s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 651s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 651s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 651s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1277 kB] 651s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4237 kB] 651s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 651s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 651s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 651s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 655s Fetched 11.3 MB in 1s (7578 kB/s) 655s Reading package lists... 656s Reading package lists... 657s Building dependency tree... 657s Reading state information... 658s Calculating upgrade... 658s The following packages will be upgraded: 658s cloud-init fonts-ubuntu-console python3-markupsafe 658s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 658s Need to get 629 kB of archives. 658s After this operation, 11.3 kB disk space will be freed. 658s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 658s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 658s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 658s Preconfiguring packages ... 658s Fetched 629 kB in 0s (20.9 MB/s) 658s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 658s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 658s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 658s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 658s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 658s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 658s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 658s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 658s Setting up cloud-init (24.1.2-0ubuntu1) ... 660s Setting up python3-markupsafe (2.1.5-1build1) ... 660s Processing triggers for man-db (2.12.0-3) ... 660s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 661s Reading package lists... 661s Building dependency tree... 661s Reading state information... 662s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 662s sh: Attempting to set up Debian/Ubuntu apt sources automatically 662s sh: Distribution appears to be Ubuntu 663s Reading package lists... 663s Building dependency tree... 663s Reading state information... 664s eatmydata is already the newest version (131-1). 664s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 664s Reading package lists... 664s Building dependency tree... 664s Reading state information... 665s dbus is already the newest version (1.14.10-4ubuntu1). 665s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 665s Reading package lists... 665s Building dependency tree... 665s Reading state information... 665s rng-tools-debian is already the newest version (2.4). 665s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 666s Reading package lists... 666s Building dependency tree... 666s Reading state information... 666s The following packages will be REMOVED: 666s cloud-init* python3-configobj* python3-debconf* 667s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 667s After this operation, 3256 kB disk space will be freed. 667s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 667s Removing cloud-init (24.1.2-0ubuntu1) ... 667s Removing python3-configobj (5.0.8-3) ... 667s Removing python3-debconf (1.5.86) ... 667s Processing triggers for man-db (2.12.0-3) ... 668s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 668s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 668s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 668s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 668s invoke-rc.d: policy-rc.d denied execution of try-restart. 669s Reading package lists... 669s Building dependency tree... 669s Reading state information... 669s linux-generic is already the newest version (6.8.0-11.11+1). 669s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 670s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 670s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 670s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 672s Reading package lists... 672s Reading package lists... 672s Building dependency tree... 672s Reading state information... 672s Calculating upgrade... 673s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 673s Reading package lists... 673s Building dependency tree... 673s Reading state information... 673s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 673s autopkgtest [02:57:52]: rebooting testbed after setup commands that affected boot 693s autopkgtest [02:58:12]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 693s autopkgtest [02:58:12]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-goseq 695s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-goseq 1.54.0-1 (dsc) [2151 B] 695s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-goseq 1.54.0-1 (tar) [1770 kB] 695s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-goseq 1.54.0-1 (diff) [2692 B] 695s gpgv: Signature made Fri Dec 1 11:00:22 2023 UTC 695s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 695s gpgv: issuer "tille@debian.org" 695s gpgv: Can't check signature: No public key 695s dpkg-source: warning: cannot verify inline signature for ./r-bioc-goseq_1.54.0-1.dsc: no acceptable signature found 695s autopkgtest [02:58:14]: testing package r-bioc-goseq version 1.54.0-1 695s autopkgtest [02:58:14]: build not needed 704s autopkgtest [02:58:23]: test pkg-r-autopkgtest: preparing testbed 708s Note, using file '/tmp/autopkgtest.EmWCLP/1-autopkgtest-satdep.dsc' to get the build dependencies 709s Reading package lists... 709s Building dependency tree... 709s Reading state information... 709s Starting pkgProblemResolver with broken count: 0 709s Starting 2 pkgProblemResolver with broken count: 0 709s Done 710s The following NEW packages will be installed: 710s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 710s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 710s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 710s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 710s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8 710s libatomic1 libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev 710s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1 710s libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 710s libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 710s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 710s libjpeg8-dev libjs-jquery liblapack-dev liblapack3 liblerc4 liblsan0 710s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 710s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 710s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 710s libpng-dev libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev 710s libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 710s libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 710s libxt6 linux-libc-dev node-html5shiv pkg-config pkg-r-autopkgtest pkgconf 710s pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase 710s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 710s r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray r-bioc-edger 710s r-bioc-genelendatabase r-bioc-genomeinfodb r-bioc-genomeinfodbdata 710s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 710s r-bioc-go.db r-bioc-goseq r-bioc-iranges r-bioc-keggrest r-bioc-limma 710s r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rhtslib r-bioc-rsamtools 710s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 710s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 710s r-cran-askpass r-cran-bh r-cran-biasedurn r-cran-bit r-cran-bit64 710s r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools 710s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr 710s r-cran-digest r-cran-dplyr r-cran-fansi r-cran-fastmap r-cran-filelock 710s r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics 710s r-cran-glue r-cran-hms r-cran-httr r-cran-jsonlite r-cran-lambda.r 710s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr 710s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 710s r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten 710s r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress r-cran-purrr 710s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 710s r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-snow r-cran-statmod 710s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 710s r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml 710s r-cran-xml2 r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils zip 710s zlib1g-dev 710s 0 upgraded, 214 newly installed, 0 to remove and 0 not upgraded. 710s Need to get 445 MB of archives. 710s After this operation, 1364 MB of additional disk space will be used. 710s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 710s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 710s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 710s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 710s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 710s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 710s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 710s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 710s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 710s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 710s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 710s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 710s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 710s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 710s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 710s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 710s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 710s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 710s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 710s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 710s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 710s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 710s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 710s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 710s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 710s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 710s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 710s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 710s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 710s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 710s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 710s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 710s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 710s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 710s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 710s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 710s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 710s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 710s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 710s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 710s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 710s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 710s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 710s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 710s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 710s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 710s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 710s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 710s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 710s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 711s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 711s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 711s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 711s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 711s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 711s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 711s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 711s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 711s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 711s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 711s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 711s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 711s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 711s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 711s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 711s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 711s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 711s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 711s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 711s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 711s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 711s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 711s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 711s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 711s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 711s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 711s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 711s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 711s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 711s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 711s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 711s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 711s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 711s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 711s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 711s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 711s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 711s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 711s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 711s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 711s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 711s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 711s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 711s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 711s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 711s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 711s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 711s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 711s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 711s Get:100 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 711s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 711s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 711s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 711s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 711s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 711s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 711s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 711s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 711s Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 711s Get:110 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 711s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 711s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 711s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 711s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 711s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 711s Get:116 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 711s Get:117 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 711s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 711s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 711s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 711s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 711s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 711s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 711s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 711s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 711s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 711s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 711s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 711s Get:129 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 711s Get:130 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 711s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 711s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 711s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 711s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 711s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 711s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 711s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 711s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 711s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 711s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 711s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 711s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 711s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 711s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 711s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 711s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 711s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 711s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 711s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 712s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 712s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 712s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 712s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 712s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 712s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 712s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 712s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 712s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 712s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 712s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 712s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 712s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 712s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 712s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 712s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 712s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 712s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 712s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 712s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 712s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 712s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 712s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 712s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 712s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 712s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 712s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 712s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 712s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 712s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 712s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 712s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 712s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 712s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 712s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 712s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 712s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 712s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 712s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 712s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 712s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 712s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 712s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-limma amd64 3.58.1+dfsg-1 [1899 kB] 712s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-locfit amd64 1.5-9.8-1 [513 kB] 712s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 712s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 712s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 712s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-edger amd64 4.0.16+dfsg-1 [1149 kB] 712s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 712s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 712s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 714s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 714s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 714s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 714s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 714s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 714s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 714s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 714s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genelendatabase all 1.38.0-1 [100 MB] 714s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-go.db all 3.18.0-1 [18.7 MB] 714s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biasedurn amd64 2.0.11-1 [279 kB] 714s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 714s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 714s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-goseq all 1.54.0-1 [1744 kB] 714s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB] 714s Preconfiguring packages ... 714s Fetched 445 MB in 4s (115 MB/s) 714s Selecting previously unselected package libc-dev-bin. 715s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 715s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 715s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 715s Selecting previously unselected package linux-libc-dev:amd64. 715s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 715s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 715s Selecting previously unselected package libcrypt-dev:amd64. 715s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 715s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 715s Selecting previously unselected package libtirpc-dev:amd64. 715s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 715s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 715s Selecting previously unselected package libnsl-dev:amd64. 715s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 715s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 715s Selecting previously unselected package rpcsvc-proto. 715s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 715s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 715s Selecting previously unselected package libc6-dev:amd64. 715s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 715s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 715s Selecting previously unselected package libisl23:amd64. 715s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 715s Unpacking libisl23:amd64 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libcc1-0:amd64. 716s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 716s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 716s Selecting previously unselected package libgomp1:amd64. 716s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 716s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 716s Selecting previously unselected package libitm1:amd64. 716s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 716s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 716s Selecting previously unselected package libatomic1:amd64. 716s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 716s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 716s Selecting previously unselected package libasan8:amd64. 716s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 716s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 716s Selecting previously unselected package liblsan0:amd64. 716s 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libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 717s Selecting previously unselected package fontconfig. 717s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 717s Unpacking fontconfig (2.15.0-1ubuntu1) ... 718s Selecting previously unselected package libgfortran5:amd64. 718s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 718s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 718s Selecting previously unselected package libgfortran-13-dev:amd64. 718s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 718s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 718s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 718s Preparing to unpack .../042-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 718s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 718s Selecting previously unselected package gfortran-13. 718s Preparing to unpack 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package libthai0:amd64. 722s Preparing to unpack .../075-libthai0_0.1.29-2_amd64.deb ... 722s Unpacking libthai0:amd64 (0.1.29-2) ... 722s Selecting previously unselected package libpango-1.0-0:amd64. 722s Preparing to unpack .../076-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 722s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 722s Selecting previously unselected package libpangoft2-1.0-0:amd64. 722s Preparing to unpack .../077-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 722s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 722s Selecting previously unselected package libpangocairo-1.0-0:amd64. 722s Preparing to unpack .../078-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 722s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 722s Selecting previously unselected package libpaper1:amd64. 722s Preparing to unpack .../079-libpaper1_1.1.29_amd64.deb ... 722s Unpacking libpaper1:amd64 (1.1.29) ... 722s Selecting previously unselected package libpaper-utils. 722s Preparing to unpack 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Preparing to unpack .../096-libxss1_1%3a1.2.3-1build2_amd64.deb ... 722s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 722s Selecting previously unselected package libtk8.6:amd64. 722s Preparing to unpack .../097-libtk8.6_8.6.13-2_amd64.deb ... 722s Unpacking libtk8.6:amd64 (8.6.13-2) ... 722s Selecting previously unselected package libxt6:amd64. 722s Preparing to unpack .../098-libxt6_1%3a1.2.1-1.1_amd64.deb ... 722s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 722s Selecting previously unselected package node-html5shiv. 722s Preparing to unpack .../099-node-html5shiv_3.7.3+dfsg-5_all.deb ... 722s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 722s Selecting previously unselected package pkgconf-bin. 723s Preparing to unpack .../100-pkgconf-bin_1.8.1-2_amd64.deb ... 723s Unpacking pkgconf-bin (1.8.1-2) ... 723s Selecting previously unselected package pkgconf:amd64. 723s Preparing to unpack .../101-pkgconf_1.8.1-2_amd64.deb ... 723s Unpacking pkgconf:amd64 (1.8.1-2) ... 723s Selecting previously unselected package pkg-config:amd64. 723s Preparing to unpack .../102-pkg-config_1.8.1-2_amd64.deb ... 723s Unpacking pkg-config:amd64 (1.8.1-2) ... 723s Selecting previously unselected package zip. 723s Preparing to unpack .../103-zip_3.0-13_amd64.deb ... 723s Unpacking zip (3.0-13) ... 723s Selecting previously unselected package unzip. 723s Preparing to unpack .../104-unzip_6.0-28ubuntu3_amd64.deb ... 723s Unpacking unzip (6.0-28ubuntu3) ... 723s Selecting previously unselected package xdg-utils. 723s Preparing to unpack .../105-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 723s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 723s Selecting previously unselected package r-base-core. 723s Preparing to unpack .../106-r-base-core_4.3.2-1build1_amd64.deb ... 723s Unpacking r-base-core (4.3.2-1build1) ... 723s Selecting previously unselected package liblzma-dev:amd64. 723s Preparing to unpack .../107-liblzma-dev_5.4.5-0.3_amd64.deb ... 723s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 723s Selecting previously unselected package r-base-dev. 723s Preparing to unpack .../108-r-base-dev_4.3.2-1build1_all.deb ... 723s Unpacking r-base-dev (4.3.2-1build1) ... 723s Selecting previously unselected package pkg-r-autopkgtest. 723s Preparing to unpack .../109-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 723s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 723s Selecting previously unselected package r-bioc-biocgenerics. 723s Preparing to unpack .../110-r-bioc-biocgenerics_0.48.1-2_all.deb ... 723s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 723s Selecting previously unselected package r-bioc-biobase. 723s Preparing to unpack .../111-r-bioc-biobase_2.62.0-1_amd64.deb ... 723s Unpacking r-bioc-biobase (2.62.0-1) ... 723s Selecting previously unselected package r-bioc-s4vectors. 723s Preparing to unpack .../112-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 723s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 723s Selecting previously unselected package r-bioc-iranges. 723s Preparing to unpack .../113-r-bioc-iranges_2.36.0-1_amd64.deb ... 723s Unpacking r-bioc-iranges (2.36.0-1) ... 723s Selecting previously unselected package r-cran-dbi. 723s Preparing to unpack .../114-r-cran-dbi_1.2.2-1_all.deb ... 723s Unpacking r-cran-dbi (1.2.2-1) ... 723s Selecting previously unselected package r-cran-bit. 723s Preparing to unpack .../115-r-cran-bit_4.0.5-1_amd64.deb ... 723s Unpacking r-cran-bit (4.0.5-1) ... 723s Selecting previously unselected package r-cran-bit64. 723s Preparing to unpack .../116-r-cran-bit64_4.0.5-1_amd64.deb ... 723s Unpacking r-cran-bit64 (4.0.5-1) ... 723s Selecting previously unselected package r-cran-rlang. 723s Preparing to unpack .../117-r-cran-rlang_1.1.3-1_amd64.deb ... 723s Unpacking r-cran-rlang (1.1.3-1) ... 724s Selecting previously unselected package r-cran-cli. 724s Preparing to unpack .../118-r-cran-cli_3.6.2-1_amd64.deb ... 724s Unpacking r-cran-cli (3.6.2-1) ... 724s Selecting previously unselected package r-cran-glue. 724s Preparing to unpack .../119-r-cran-glue_1.7.0-1_amd64.deb ... 724s Unpacking r-cran-glue (1.7.0-1) ... 724s Selecting previously unselected package r-cran-lifecycle. 724s Preparing to unpack .../120-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 724s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 724s Selecting previously unselected package r-cran-vctrs. 724s Preparing to unpack .../121-r-cran-vctrs_0.6.5-1_amd64.deb ... 724s Unpacking r-cran-vctrs (0.6.5-1) ... 724s Selecting previously unselected package r-cran-blob. 724s Preparing to unpack .../122-r-cran-blob_1.2.4-1_all.deb ... 724s Unpacking r-cran-blob (1.2.4-1) ... 724s Selecting previously unselected package r-cran-fastmap. 724s Preparing to unpack .../123-r-cran-fastmap_1.1.1-1_amd64.deb ... 724s Unpacking r-cran-fastmap (1.1.1-1) ... 724s Selecting previously unselected package r-cran-cachem. 724s Preparing to unpack .../124-r-cran-cachem_1.0.8-1_amd64.deb ... 724s Unpacking r-cran-cachem (1.0.8-1) ... 724s Selecting previously unselected package r-cran-memoise. 724s Preparing to unpack .../125-r-cran-memoise_2.0.1-1_all.deb ... 724s Unpacking r-cran-memoise (2.0.1-1) ... 724s Selecting previously unselected package r-cran-pkgconfig. 724s Preparing to unpack .../126-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 724s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 724s Selecting previously unselected package r-cran-plogr. 724s Preparing to unpack .../127-r-cran-plogr_0.2.0-3build1_all.deb ... 724s Unpacking r-cran-plogr (0.2.0-3build1) ... 724s Selecting previously unselected package r-cran-cpp11. 724s Preparing to unpack .../128-r-cran-cpp11_0.4.7-1_all.deb ... 724s Unpacking r-cran-cpp11 (0.4.7-1) ... 724s Selecting previously unselected package r-cran-rsqlite. 724s Preparing to unpack .../129-r-cran-rsqlite_2.3.4-1_amd64.deb ... 724s Unpacking r-cran-rsqlite (2.3.4-1) ... 724s Selecting previously unselected package r-cran-curl. 724s Preparing to unpack .../130-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 724s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 724s Selecting previously unselected package r-cran-jsonlite. 724s Preparing to unpack .../131-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 724s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 724s Selecting previously unselected package r-cran-mime. 724s Preparing to unpack .../132-r-cran-mime_0.12-1_amd64.deb ... 724s Unpacking r-cran-mime (0.12-1) ... 724s Selecting previously unselected package r-cran-sys. 724s Preparing to unpack .../133-r-cran-sys_3.4.2-1_amd64.deb ... 724s Unpacking r-cran-sys (3.4.2-1) ... 724s Selecting previously unselected package r-cran-askpass. 724s Preparing to unpack .../134-r-cran-askpass_1.2.0-1_amd64.deb ... 724s Unpacking r-cran-askpass (1.2.0-1) ... 724s Selecting previously unselected package r-cran-openssl. 724s Preparing to unpack .../135-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 724s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 724s Selecting previously unselected package r-cran-r6. 724s Preparing to unpack .../136-r-cran-r6_2.5.1-1_all.deb ... 724s Unpacking r-cran-r6 (2.5.1-1) ... 724s Selecting previously unselected package r-cran-httr. 724s Preparing to unpack .../137-r-cran-httr_1.4.7+dfsg-1_all.deb ... 724s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 724s Selecting previously unselected package r-cran-png. 724s Preparing to unpack .../138-r-cran-png_0.1-8-1_amd64.deb ... 724s Unpacking r-cran-png (0.1-8-1) ... 724s Selecting previously unselected package r-bioc-zlibbioc. 724s Preparing to unpack .../139-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 724s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 724s Selecting previously unselected package r-bioc-xvector. 724s Preparing to unpack .../140-r-bioc-xvector_0.42.0-1_amd64.deb ... 724s Unpacking r-bioc-xvector (0.42.0-1) ... 724s Selecting previously unselected package r-cran-bitops. 724s Preparing to unpack .../141-r-cran-bitops_1.0-7-1_amd64.deb ... 724s Unpacking r-cran-bitops (1.0-7-1) ... 724s Selecting previously unselected package r-cran-rcurl. 724s Preparing to unpack .../142-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 724s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 724s Selecting previously unselected package r-bioc-genomeinfodbdata. 724s Preparing to unpack .../143-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 724s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 725s Selecting previously unselected package r-bioc-genomeinfodb. 725s Preparing to unpack .../144-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 725s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 725s Selecting previously unselected package r-cran-crayon. 725s Preparing to unpack .../145-r-cran-crayon_1.5.2-1_all.deb ... 725s Unpacking r-cran-crayon (1.5.2-1) ... 725s Selecting previously unselected package r-bioc-biostrings. 725s Preparing to unpack .../146-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 725s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 725s Selecting previously unselected package r-bioc-keggrest. 725s Preparing to unpack .../147-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 725s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 725s Selecting previously unselected package r-bioc-annotationdbi. 725s Preparing to unpack .../148-r-bioc-annotationdbi_1.64.1-1_all.deb ... 725s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 725s Selecting previously unselected package r-cran-generics. 725s Preparing to unpack .../149-r-cran-generics_0.1.3-1_all.deb ... 725s Unpacking r-cran-generics (0.1.3-1) ... 725s Selecting previously unselected package r-cran-magrittr. 725s Preparing to unpack .../150-r-cran-magrittr_2.0.3-1_amd64.deb ... 725s Unpacking r-cran-magrittr (2.0.3-1) ... 725s Selecting previously unselected package r-cran-fansi. 725s Preparing to unpack .../151-r-cran-fansi_1.0.5-1_amd64.deb ... 725s Unpacking r-cran-fansi (1.0.5-1) ... 725s Selecting previously unselected package r-cran-utf8. 725s Preparing to unpack .../152-r-cran-utf8_1.2.4-1_amd64.deb ... 725s Unpacking r-cran-utf8 (1.2.4-1) ... 725s Selecting previously unselected package r-cran-pillar. 725s Preparing to unpack .../153-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 725s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 725s Selecting previously unselected package r-cran-tibble. 725s Preparing to unpack .../154-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 725s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 725s Selecting previously unselected package r-cran-withr. 725s Preparing to unpack .../155-r-cran-withr_2.5.0-1_all.deb ... 725s Unpacking r-cran-withr (2.5.0-1) ... 725s Selecting previously unselected package r-cran-tidyselect. 725s Preparing to unpack .../156-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 725s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 725s Selecting previously unselected package r-cran-dplyr. 725s Preparing to unpack .../157-r-cran-dplyr_1.1.4-1_amd64.deb ... 725s Unpacking r-cran-dplyr (1.1.4-1) ... 725s Selecting previously unselected package r-cran-purrr. 725s Preparing to unpack .../158-r-cran-purrr_1.0.2-1_amd64.deb ... 725s Unpacking r-cran-purrr (1.0.2-1) ... 725s Selecting previously unselected package r-cran-stringi. 725s Preparing to unpack .../159-r-cran-stringi_1.8.3-1_amd64.deb ... 725s Unpacking r-cran-stringi (1.8.3-1) ... 725s Selecting previously unselected package r-cran-stringr. 725s Preparing to unpack .../160-r-cran-stringr_1.5.1-1_all.deb ... 725s Unpacking r-cran-stringr (1.5.1-1) ... 725s Selecting previously unselected package r-cran-tidyr. 725s Preparing to unpack .../161-r-cran-tidyr_1.3.1-1_amd64.deb ... 725s Unpacking r-cran-tidyr (1.3.1-1) ... 726s Selecting previously unselected package r-cran-dbplyr. 726s Preparing to unpack .../162-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 726s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 726s Selecting previously unselected package r-cran-filelock. 726s Preparing to unpack .../163-r-cran-filelock_1.0.3-1_amd64.deb ... 726s Unpacking r-cran-filelock (1.0.3-1) ... 726s Selecting previously unselected package r-bioc-biocfilecache. 726s Preparing to unpack .../164-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 726s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 726s Selecting previously unselected package r-bioc-biocio. 726s Preparing to unpack .../165-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 726s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 726s Selecting previously unselected package r-cran-formatr. 726s Preparing to unpack .../166-r-cran-formatr_1.14-1_all.deb ... 726s Unpacking r-cran-formatr (1.14-1) ... 726s Selecting previously unselected package r-cran-lambda.r. 726s Preparing to unpack .../167-r-cran-lambda.r_1.2.4-2build1_all.deb ... 726s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 726s Selecting previously unselected package r-cran-futile.options. 726s Preparing to unpack .../168-r-cran-futile.options_1.0.1-3build1_all.deb ... 726s Unpacking r-cran-futile.options (1.0.1-3build1) ... 726s Selecting previously unselected package r-cran-futile.logger. 726s Preparing to unpack .../169-r-cran-futile.logger_1.4.3-4build1_all.deb ... 726s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 726s Selecting previously unselected package r-cran-snow. 726s Preparing to unpack .../170-r-cran-snow_1%3a0.4.4-2_all.deb ... 726s Unpacking r-cran-snow (1:0.4.4-2) ... 726s Selecting previously unselected package r-cran-codetools. 726s Preparing to unpack .../171-r-cran-codetools_0.2-19-1_all.deb ... 726s Unpacking r-cran-codetools (0.2-19-1) ... 726s Selecting previously unselected package r-cran-bh. 726s Preparing to unpack .../172-r-cran-bh_1.84.0-1_all.deb ... 726s Unpacking r-cran-bh (1.84.0-1) ... 726s Selecting previously unselected package r-bioc-biocparallel. 726s Preparing to unpack .../173-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 726s Unpacking r-bioc-biocparallel (1.36.0-1) ... 726s Selecting previously unselected package r-cran-xml. 726s Preparing to unpack .../174-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 726s Unpacking r-cran-xml (3.99-0.16.1-1) ... 726s Selecting previously unselected package r-cran-hms. 726s Preparing to unpack .../175-r-cran-hms_1.1.3-1_all.deb ... 726s Unpacking r-cran-hms (1.1.3-1) ... 726s Selecting previously unselected package r-cran-prettyunits. 726s Preparing to unpack .../176-r-cran-prettyunits_1.2.0-1_all.deb ... 726s Unpacking r-cran-prettyunits (1.2.0-1) ... 726s Selecting previously unselected package r-cran-progress. 726s Preparing to unpack .../177-r-cran-progress_1.2.3-1_all.deb ... 726s Unpacking r-cran-progress (1.2.3-1) ... 726s Selecting previously unselected package r-cran-digest. 726s Preparing to unpack .../178-r-cran-digest_0.6.34-1_amd64.deb ... 726s Unpacking r-cran-digest (0.6.34-1) ... 726s Selecting previously unselected package r-cran-rappdirs. 726s Preparing to unpack .../179-r-cran-rappdirs_0.3.3-1_amd64.deb ... 726s Unpacking r-cran-rappdirs (0.3.3-1) ... 726s Selecting previously unselected package r-cran-xml2. 726s Preparing to unpack .../180-r-cran-xml2_1.3.6-1_amd64.deb ... 726s Unpacking r-cran-xml2 (1.3.6-1) ... 726s Selecting previously unselected package r-bioc-biomart. 726s Preparing to unpack .../181-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 726s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 726s Selecting previously unselected package r-cran-lattice. 726s Preparing to unpack .../182-r-cran-lattice_0.22-5-1_amd64.deb ... 726s Unpacking r-cran-lattice (0.22-5-1) ... 726s Selecting previously unselected package r-cran-matrix. 726s Preparing to unpack .../183-r-cran-matrix_1.6-5-1_amd64.deb ... 726s Unpacking r-cran-matrix (1.6-5-1) ... 727s Selecting previously unselected package r-cran-matrixstats. 727s Preparing to unpack .../184-r-cran-matrixstats_1.2.0-1_amd64.deb ... 727s Unpacking r-cran-matrixstats (1.2.0-1) ... 727s Selecting previously unselected package r-bioc-matrixgenerics. 727s Preparing to unpack .../185-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 727s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 727s Selecting previously unselected package r-cran-abind. 727s Preparing to unpack .../186-r-cran-abind_1.4-5-2_all.deb ... 727s Unpacking r-cran-abind (1.4-5-2) ... 727s Selecting previously unselected package r-bioc-s4arrays. 727s Preparing to unpack .../187-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 727s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 727s Selecting previously unselected package r-bioc-sparsearray. 727s Preparing to unpack .../188-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 727s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 727s Selecting previously unselected package r-bioc-delayedarray. 727s Preparing to unpack .../189-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 727s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 727s Selecting previously unselected package r-cran-statmod. 727s Preparing to unpack .../190-r-cran-statmod_1.5.0-1_amd64.deb ... 727s Unpacking r-cran-statmod (1.5.0-1) ... 727s Selecting previously unselected package r-bioc-limma. 727s Preparing to unpack .../191-r-bioc-limma_3.58.1+dfsg-1_amd64.deb ... 727s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 727s Selecting previously unselected package r-cran-locfit. 727s Preparing to unpack .../192-r-cran-locfit_1.5-9.8-1_amd64.deb ... 727s Unpacking r-cran-locfit (1.5-9.8-1) ... 727s Selecting previously unselected package r-cran-littler. 727s Preparing to unpack .../193-r-cran-littler_0.3.19-1_amd64.deb ... 727s Unpacking r-cran-littler (0.3.19-1) ... 727s Selecting previously unselected package r-cran-pkgkitten. 727s Preparing to unpack .../194-r-cran-pkgkitten_0.2.3-1_all.deb ... 727s Unpacking r-cran-pkgkitten (0.2.3-1) ... 727s Selecting previously unselected package r-cran-rcpp. 727s Preparing to unpack .../195-r-cran-rcpp_1.0.12-1_amd64.deb ... 727s Unpacking r-cran-rcpp (1.0.12-1) ... 727s Selecting previously unselected package r-bioc-edger. 727s Preparing to unpack .../196-r-bioc-edger_4.0.16+dfsg-1_amd64.deb ... 727s Unpacking r-bioc-edger (4.0.16+dfsg-1) ... 727s Selecting previously unselected package r-bioc-genomicranges. 727s Preparing to unpack .../197-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 727s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 727s Selecting previously unselected package r-bioc-rhtslib. 727s Preparing to unpack .../198-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 727s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 727s Selecting previously unselected package r-bioc-rsamtools. 727s Preparing to unpack .../199-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 727s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 727s Selecting previously unselected package r-bioc-summarizedexperiment. 727s Preparing to unpack .../200-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 727s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 727s Selecting previously unselected package r-bioc-genomicalignments. 727s Preparing to unpack .../201-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 727s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 728s Selecting previously unselected package r-cran-rjson. 728s Preparing to unpack .../202-r-cran-rjson_0.2.21-1_amd64.deb ... 728s Unpacking r-cran-rjson (0.2.21-1) ... 728s Selecting previously unselected package r-cran-yaml. 728s Preparing to unpack .../203-r-cran-yaml_2.3.8-1_amd64.deb ... 728s Unpacking r-cran-yaml (2.3.8-1) ... 728s Selecting previously unselected package r-cran-restfulr. 728s Preparing to unpack .../204-r-cran-restfulr_0.0.15-1_amd64.deb ... 728s Unpacking r-cran-restfulr (0.0.15-1) ... 728s Selecting previously unselected package r-bioc-rtracklayer. 728s Preparing to unpack .../205-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 728s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 728s Selecting previously unselected package r-bioc-genomicfeatures. 728s Preparing to unpack .../206-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 728s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 728s Selecting previously unselected package r-bioc-genelendatabase. 728s Preparing to unpack .../207-r-bioc-genelendatabase_1.38.0-1_all.deb ... 728s Unpacking r-bioc-genelendatabase (1.38.0-1) ... 728s Selecting previously unselected package r-bioc-go.db. 728s Preparing to unpack .../208-r-bioc-go.db_3.18.0-1_all.deb ... 728s Unpacking r-bioc-go.db (3.18.0-1) ... 729s Selecting previously unselected package r-cran-biasedurn. 729s Preparing to unpack .../209-r-cran-biasedurn_2.0.11-1_amd64.deb ... 729s Unpacking r-cran-biasedurn (2.0.11-1) ... 729s Selecting previously unselected package r-cran-nlme. 729s Preparing to unpack .../210-r-cran-nlme_3.1.164-1_amd64.deb ... 729s Unpacking r-cran-nlme (3.1.164-1) ... 729s Selecting previously unselected package r-cran-mgcv. 729s Preparing to unpack .../211-r-cran-mgcv_1.9-1-1_amd64.deb ... 729s Unpacking r-cran-mgcv (1.9-1-1) ... 729s Selecting previously unselected package r-bioc-goseq. 729s Preparing to unpack .../212-r-bioc-goseq_1.54.0-1_all.deb ... 729s Unpacking r-bioc-goseq (1.54.0-1) ... 729s Selecting previously unselected package r-bioc-org.hs.eg.db. 729s Preparing to unpack .../213-r-bioc-org.hs.eg.db_3.18.0-1_all.deb ... 729s Unpacking r-bioc-org.hs.eg.db (3.18.0-1) ... 731s Setting up libgraphite2-3:amd64 (1.3.14-2) ... 731s Setting up libpixman-1-0:amd64 (0.42.2-1) ... 731s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ... 731s Setting up libpaper1:amd64 (1.1.29) ... 731s 731s Creating config file /etc/papersize with new version 731s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 731s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 731s Setting up libdatrie1:amd64 (0.2.13-3) ... 731s Setting up libxcb-render0:amd64 (1.15-1) ... 731s Setting up unzip (6.0-28ubuntu3) ... 731s Setting up x11-common (1:7.7+23ubuntu2) ... 731s Setting up node-html5shiv (3.7.3+dfsg-5) ... 731s Setting up libdeflate0:amd64 (1.19-1) ... 731s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 731s Setting up libxcb-shm0:amd64 (1.15-1) ... 731s Setting up libpaper-utils (1.1.29) ... 731s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ... 731s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ... 731s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 731s Setting up zip (3.0-13) ... 731s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 731s Setting up libblas3:amd64 (3.12.0-3) ... 731s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 731s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 731s Setting up libpkgconf3:amd64 (1.8.1-2) ... 731s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 731s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ... 731s Setting up fonts-dejavu-mono (2.37-8) ... 731s Setting up libmpc3:amd64 (1.3.1-1) ... 731s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ... 731s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... 731s Setting up icu-devtools (74.2-1ubuntu1) ... 731s Setting up fonts-dejavu-core (2.37-8) ... 731s Setting up pkgconf-bin (1.8.1-2) ... 731s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 731s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 731s Setting up libwebp7:amd64 (1.3.2-0.4) ... 731s Setting up liblzma-dev:amd64 (5.4.5-0.3) ... 731s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ... 731s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 731s Setting up libnsl-dev:amd64 (1.3.0-3) ... 731s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 731s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 731s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 731s Setting up libharfbuzz0b:amd64 (8.3.0-2) ... 731s Setting up libthai-data (0.1.29-2) ... 731s Setting up libxss1:amd64 (1:1.2.3-1build2) ... 731s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ... 731s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 731s Setting up libisl23:amd64 (0.26-3) ... 731s Setting up libc-dev-bin (2.39-0ubuntu2) ... 731s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 731s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 731s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 731s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 731s Setting up libblas-dev:amd64 (3.12.0-3) ... 731s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 731s Setting up dctrl-tools (2.24-3build2) ... 731s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 731s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 731s Setting up libice6:amd64 (2:1.0.10-1build2) ... 731s Setting up liblapack3:amd64 (3.12.0-3) ... 731s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 731s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 731s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 732s Setting up pkgconf:amd64 (1.8.1-2) ... 732s Setting up libthai0:amd64 (0.1.29-2) ... 732s Setting up liblapack-dev:amd64 (3.12.0-3) ... 732s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 732s Setting up pkg-config:amd64 (1.8.1-2) ... 732s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 732s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 732s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ... 732s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 732s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 732s Setting up libsm6:amd64 (2:1.2.3-1build2) ... 732s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ... 732s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 732s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 732s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 732s Setting up fontconfig (2.15.0-1ubuntu1) ... 734s Regenerating fonts cache... done. 734s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 734s Setting up libxft2:amd64 (2.3.6-1) ... 734s Setting up libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 734s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 734s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ... 734s Setting up cpp-13 (13.2.0-17ubuntu2) ... 734s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 734s Setting up libtk8.6:amd64 (8.6.13-2) ... 734s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... 734s Setting up libreadline-dev:amd64 (8.2-3) ... 734s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 734s Setting up libcairo2:amd64 (1.18.0-1) ... 734s Setting up gcc-13 (13.2.0-17ubuntu2) ... 734s Setting up libxt6:amd64 (1:1.2.1-1.1) ... 734s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 734s Setting up cpp (4:13.2.0-7ubuntu1) ... 734s Setting up libboost-dev:amd64 (1.83.0.1ubuntu2) ... 734s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 734s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 734s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 734s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 734s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 734s Setting up libpng-dev:amd64 (1.6.43-1) ... 734s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 734s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 734s Setting up gcc (4:13.2.0-7ubuntu1) ... 734s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 734s Setting up r-base-core (4.3.2-1build1) ... 734s 734s Creating config file /etc/R/Renviron with new version 734s Setting up r-cran-crayon (1.5.2-1) ... 734s Setting up r-cran-biasedurn (2.0.11-1) ... 734s Setting up r-cran-futile.options (1.0.1-3build1) ... 734s Setting up r-cran-lattice (0.22-5-1) ... 734s Setting up r-cran-nlme (3.1.164-1) ... 734s Setting up r-cran-formatr (1.14-1) ... 734s Setting up r-cran-xml (3.99-0.16.1-1) ... 734s Setting up r-cran-locfit (1.5-9.8-1) ... 734s Setting up r-cran-statmod (1.5.0-1) ... 734s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 734s Setting up r-cran-r6 (2.5.1-1) ... 734s Setting up r-cran-pkgkitten (0.2.3-1) ... 734s Setting up r-cran-magrittr (2.0.3-1) ... 734s Setting up r-cran-rappdirs (0.3.3-1) ... 734s Setting up r-cran-filelock (1.0.3-1) ... 734s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 734s Setting up r-cran-littler (0.3.19-1) ... 734s Setting up r-cran-bh (1.84.0-1) ... 734s Setting up r-cran-rcpp (1.0.12-1) ... 734s Setting up r-cran-curl (5.2.0+dfsg-1) ... 734s Setting up r-cran-codetools (0.2-19-1) ... 734s Setting up g++-13 (13.2.0-17ubuntu2) ... 734s Setting up r-bioc-biocgenerics (0.48.1-2) ... 734s Setting up r-cran-rlang (1.1.3-1) ... 734s Setting up r-cran-matrixstats (1.2.0-1) ... 734s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 734s Setting up r-cran-sys (3.4.2-1) ... 734s Setting up r-cran-plogr (0.2.0-3build1) ... 734s Setting up r-cran-withr (2.5.0-1) ... 734s Setting up r-cran-mime (0.12-1) ... 734s Setting up r-cran-generics (0.1.3-1) ... 734s Setting up r-cran-abind (1.4-5-2) ... 734s Setting up r-cran-digest (0.6.34-1) ... 734s Setting up r-cran-yaml (2.3.8-1) ... 734s Setting up r-cran-lambda.r (1.2.4-2build1) ... 734s Setting up r-cran-dbi (1.2.2-1) ... 734s Setting up r-cran-prettyunits (1.2.0-1) ... 734s Setting up r-cran-fansi (1.0.5-1) ... 734s Setting up r-cran-snow (1:0.4.4-2) ... 734s Setting up r-cran-glue (1.7.0-1) ... 734s Setting up r-cran-bit (4.0.5-1) ... 734s Setting up r-cran-cli (3.6.2-1) ... 734s Setting up gfortran (4:13.2.0-7ubuntu1) ... 734s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 734s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 734s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 734s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 734s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 734s Setting up r-cran-bitops (1.0-7-1) ... 734s Setting up r-cran-bit64 (4.0.5-1) ... 734s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 734s Setting up r-cran-askpass (1.2.0-1) ... 734s Setting up r-cran-fastmap (1.1.1-1) ... 734s Setting up r-cran-png (0.1-8-1) ... 734s Setting up r-bioc-biobase (2.62.0-1) ... 734s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 734s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 734s Setting up r-cran-utf8 (1.2.4-1) ... 734s Setting up r-cran-stringi (1.8.3-1) ... 734s Setting up r-cran-cpp11 (0.4.7-1) ... 734s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 734s Setting up r-cran-futile.logger (1.4.3-4build1) ... 734s Setting up r-bioc-limma (3.58.1+dfsg-1) ... 734s Setting up r-cran-matrix (1.6-5-1) ... 734s Setting up r-cran-mgcv (1.9-1-1) ... 734s Setting up g++ (4:13.2.0-7ubuntu1) ... 734s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 734s Setting up r-cran-cachem (1.0.8-1) ... 734s Setting up build-essential (12.10ubuntu1) ... 734s Setting up r-bioc-iranges (2.36.0-1) ... 734s Setting up r-cran-rjson (0.2.21-1) ... 734s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 734s Setting up r-cran-restfulr (0.0.15-1) ... 734s Setting up r-cran-vctrs (0.6.5-1) ... 734s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 734s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 734s Setting up r-base-dev (4.3.2-1build1) ... 734s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 734s Setting up r-cran-stringr (1.5.1-1) ... 734s Setting up r-bioc-biocparallel (1.36.0-1) ... 734s Setting up r-bioc-edger (4.0.16+dfsg-1) ... 734s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 734s Setting up r-cran-xml2 (1.3.6-1) ... 734s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 734s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 734s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 734s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 734s Setting up r-cran-httr (1.4.7+dfsg-1) ... 734s Setting up r-cran-hms (1.1.3-1) ... 734s Setting up r-cran-memoise (2.0.1-1) ... 734s Setting up r-cran-purrr (1.0.2-1) ... 734s Setting up r-cran-blob (1.2.4-1) ... 734s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 734s Setting up r-bioc-xvector (0.42.0-1) ... 734s Setting up r-cran-dplyr (1.1.4-1) ... 734s Setting up r-cran-rsqlite (2.3.4-1) ... 734s Setting up r-cran-progress (1.2.3-1) ... 734s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 734s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 734s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 734s Setting up r-cran-tidyr (1.3.1-1) ... 734s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 734s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 734s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 734s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 734s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 734s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 734s Setting up r-bioc-annotationdbi (1.64.1-1) ... 734s Setting up r-bioc-go.db (3.18.0-1) ... 734s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 734s Setting up r-bioc-genomicalignments (1.38.2-1) ... 734s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ... 734s Setting up r-bioc-rtracklayer (1.62.0-1) ... 734s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 734s Setting up r-bioc-genelendatabase (1.38.0-1) ... 734s Setting up r-bioc-goseq (1.54.0-1) ... 734s Processing triggers for libc-bin (2.39-0ubuntu2) ... 734s Processing triggers for man-db (2.12.0-3) ... 736s Processing triggers for install-info (7.1-3) ... 743s Reading package lists... 743s Building dependency tree... 743s Reading state information... 744s Starting pkgProblemResolver with broken count: 0 744s Starting 2 pkgProblemResolver with broken count: 0 744s Done 744s The following NEW packages will be installed: 744s autopkgtest-satdep 744s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 744s Need to get 0 B/696 B of archives. 744s After this operation, 0 B of additional disk space will be used. 744s Get:1 /tmp/autopkgtest.EmWCLP/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 745s Selecting previously unselected package autopkgtest-satdep. 745s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 103002 files and directories currently installed.) 745s Preparing to unpack .../2-autopkgtest-satdep.deb ... 745s Unpacking autopkgtest-satdep (0) ... 745s Setting up autopkgtest-satdep (0) ... 746s (Reading database ... 103002 files and directories currently installed.) 746s Removing autopkgtest-satdep (0) ... 747s autopkgtest [02:59:06]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 747s autopkgtest [02:59:06]: test pkg-r-autopkgtest: [----------------------- 747s Test: Try to load the R library goseq 747s 747s R version 4.3.2 (2023-10-31) -- "Eye Holes" 747s Copyright (C) 2023 The R Foundation for Statistical Computing 747s Platform: x86_64-pc-linux-gnu (64-bit) 747s 747s R is free software and comes with ABSOLUTELY NO WARRANTY. 747s You are welcome to redistribute it under certain conditions. 747s Type 'license()' or 'licence()' for distribution details. 747s 747s R is a collaborative project with many contributors. 747s Type 'contributors()' for more information and 747s 'citation()' on how to cite R or R packages in publications. 747s 747s Type 'demo()' for some demos, 'help()' for on-line help, or 747s 'help.start()' for an HTML browser interface to help. 747s Type 'q()' to quit R. 747s 747s > library('goseq') 747s Loading required package: BiasedUrn 747s Loading required package: geneLenDataBase 757s 757s > 757s > 757s Other tests are currently unsupported! 757s They will be progressively added. 757s autopkgtest [02:59:16]: test pkg-r-autopkgtest: -----------------------] 757s autopkgtest [02:59:16]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 757s pkg-r-autopkgtest PASS 757s autopkgtest [02:59:16]: @@@@@@@@@@@@@@@@@@@@ summary 757s pkg-r-autopkgtest PASS 773s Creating nova instance adt-noble-i386-r-bioc-goseq-20240322-024639-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...