0s autopkgtest [02:46:26]: starting date and time: 2024-03-22 02:46:26+0000 0s autopkgtest [02:46:26]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [02:46:26]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.boot485l/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-ggbio --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-24.secgroup --name adt-noble-i386-r-bioc-ggbio-20240322-024626-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 836s autopkgtest [03:00:22]: testbed dpkg architecture: amd64 836s autopkgtest [03:00:22]: testbed apt version: 2.7.12 836s autopkgtest [03:00:22]: test architecture: i386 836s autopkgtest [03:00:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup 836s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 836s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3805 kB] 836s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 836s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 836s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 836s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB] 836s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB] 836s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 836s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 836s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 836s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 836s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1277 kB] 836s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4237 kB] 836s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 836s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 836s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 836s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 840s Fetched 11.3 MB in 2s (7484 kB/s) 840s Reading package lists... 841s Reading package lists... 842s Building dependency tree... 842s Reading state information... 842s Calculating upgrade... 842s The following packages will be upgraded: 842s cloud-init fonts-ubuntu-console python3-markupsafe 842s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 842s Need to get 629 kB of archives. 842s After this operation, 11.3 kB disk space will be freed. 842s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 842s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 842s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 843s Preconfiguring packages ... 843s Fetched 629 kB in 0s (23.4 MB/s) 843s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 843s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 843s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 843s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 843s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 843s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 843s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 843s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 843s Setting up cloud-init (24.1.2-0ubuntu1) ... 845s Setting up python3-markupsafe (2.1.5-1build1) ... 845s Processing triggers for man-db (2.12.0-3) ... 845s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 846s Reading package lists... 846s Building dependency tree... 846s Reading state information... 847s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 847s sh: Attempting to set up Debian/Ubuntu apt sources automatically 847s sh: Distribution appears to be Ubuntu 849s Reading package lists... 849s Building dependency tree... 849s Reading state information... 849s eatmydata is already the newest version (131-1). 849s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 849s Reading package lists... 849s Building dependency tree... 849s Reading state information... 849s dbus is already the newest version (1.14.10-4ubuntu1). 849s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 849s Reading package lists... 850s Building dependency tree... 850s Reading state information... 850s rng-tools-debian is already the newest version (2.4). 850s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 850s Reading package lists... 850s Building dependency tree... 850s Reading state information... 851s The following packages will be REMOVED: 851s cloud-init* python3-configobj* python3-debconf* 851s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 851s After this operation, 3256 kB disk space will be freed. 851s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 851s Removing cloud-init (24.1.2-0ubuntu1) ... 851s Removing python3-configobj (5.0.8-3) ... 851s Removing python3-debconf (1.5.86) ... 851s Processing triggers for man-db (2.12.0-3) ... 852s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 852s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 852s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 852s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 852s invoke-rc.d: policy-rc.d denied execution of try-restart. 853s Reading package lists... 853s Building dependency tree... 853s Reading state information... 853s linux-generic is already the newest version (6.8.0-11.11+1). 853s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 853s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 853s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 853s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 856s Reading package lists... 856s Reading package lists... 856s Building dependency tree... 856s Reading state information... 856s Calculating upgrade... 856s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 856s Reading package lists... 857s Building dependency tree... 857s Reading state information... 857s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 857s autopkgtest [03:00:43]: rebooting testbed after setup commands that affected boot 880s autopkgtest [03:01:06]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 880s autopkgtest [03:01:06]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-ggbio 881s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ggbio 1.50.0-1 (dsc) [2564 B] 881s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ggbio 1.50.0-1 (tar) [3252 kB] 881s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ggbio 1.50.0-1 (diff) [5428 B] 882s gpgv: Signature made Fri Dec 8 14:52:19 2023 UTC 882s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 882s gpgv: issuer "tille@debian.org" 882s gpgv: Can't check signature: No public key 882s dpkg-source: warning: cannot verify inline signature for ./r-bioc-ggbio_1.50.0-1.dsc: no acceptable signature found 882s autopkgtest [03:01:08]: testing package r-bioc-ggbio version 1.50.0-1 882s autopkgtest [03:01:08]: build not needed 883s autopkgtest [03:01:09]: test pkg-r-autopkgtest: preparing testbed 889s Note, using file '/tmp/autopkgtest.nzalbh/1-autopkgtest-satdep.dsc' to get the build dependencies 889s Reading package lists... 890s Building dependency tree... 890s Reading state information... 890s Starting pkgProblemResolver with broken count: 0 890s Starting 2 pkgProblemResolver with broken count: 0 890s Done 891s The following NEW packages will be installed: 891s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 891s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 891s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 891s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 891s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 891s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 891s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 891s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 891s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 891s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 891s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 891s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 891s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 891s libjs-highlight.js libjs-jquery libjs-jquery-datatables 891s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 891s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 891s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 891s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 891s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 891s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 891s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 891s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 891s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 891s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 891s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 891s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 891s linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css 891s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 891s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter 891s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 891s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings 891s r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray r-bioc-ensembldb 891s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 891s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-ggbio r-bioc-graph 891s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-organismdbi 891s r-bioc-protgenerics r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools 891s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 891s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 891s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 891s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 891s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-broom 891s r-cran-broom.helpers r-cran-bslib r-cran-cachem r-cran-callr 891s r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr r-cran-cluster 891s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 891s r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr 891s r-cran-deldir r-cran-desc r-cran-dichromat r-cran-diffobj r-cran-digest 891s r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver 891s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-forcats 891s r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger 891s r-cran-futile.options r-cran-generics r-cran-ggally r-cran-ggplot2 891s r-cran-ggstats r-cran-glue r-cran-gridextra r-cran-gtable r-cran-haven 891s r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools 891s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-interp r-cran-isoband 891s r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 891s r-cran-labelled r-cran-lambda.r r-cran-later r-cran-lattice 891s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 891s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 891s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet 891s r-cran-openssl r-cran-patchwork r-cran-pillar r-cran-pkgbuild 891s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 891s r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 891s r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs 891s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl r-cran-readr 891s r-cran-rematch2 r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang 891s r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite 891s r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 891s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 891s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 891s r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite 891s r-cran-vroom r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 891s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 891s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 891s xdg-utils zip zlib1g-dev 891s 0 upgraded, 349 newly installed, 0 to remove and 0 not upgraded. 891s Need to get 501 MB of archives. 891s After this operation, 1470 MB of additional disk space will be used. 891s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 891s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 891s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 891s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 891s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 891s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 891s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 891s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 891s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 891s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 891s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 891s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 891s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 891s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 891s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 891s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 891s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 891s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 891s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 891s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 891s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 891s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 891s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 891s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 891s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 891s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 891s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 891s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 891s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 891s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 891s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 891s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 891s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 891s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 891s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 891s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 891s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 891s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 891s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 891s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 891s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 891s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 891s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 891s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 891s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 891s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 891s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 891s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 891s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 891s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 891s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 891s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 891s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 891s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 891s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 891s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 891s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 891s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 891s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 891s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 891s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 891s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 891s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 891s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 891s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 891s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 891s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 891s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 891s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 891s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 891s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 891s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 892s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 892s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 892s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 892s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 892s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 892s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 892s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 892s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 892s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 892s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 892s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 892s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 892s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 892s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 892s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 892s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 892s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 892s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 892s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 892s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 892s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 892s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 892s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 892s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 892s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 892s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 892s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 892s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 892s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 892s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 892s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 892s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 892s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 892s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 892s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 892s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 892s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 892s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 892s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 892s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 892s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 892s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 892s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 892s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 892s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 892s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 892s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 892s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 892s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 892s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 892s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 892s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 892s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 892s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 892s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 892s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 892s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 892s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 892s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 892s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 892s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 892s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 892s Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 892s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 892s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 892s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 892s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 892s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 892s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 892s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 892s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 892s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 892s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 892s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 892s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 892s Get:148 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 892s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 892s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 892s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 892s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 892s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 892s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 892s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 892s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 892s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 892s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 892s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 892s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 892s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 892s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 892s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 892s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 892s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 892s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 892s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 892s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 892s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 892s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 892s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 892s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 892s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 892s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 892s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 892s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 892s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 892s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 892s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 892s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 892s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 892s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 892s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 892s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 892s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 892s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 892s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 892s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 892s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 892s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 893s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 893s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 893s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 893s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 893s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 893s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 893s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 893s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 893s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 893s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 893s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 893s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 893s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 893s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 893s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 893s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 893s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 893s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 893s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 893s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 893s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 893s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 893s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 893s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 893s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 893s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 893s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 893s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 893s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 893s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 893s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 893s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 893s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 893s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 893s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 893s Get:226 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 893s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 893s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 893s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 893s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 893s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 893s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 893s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 893s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 893s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 893s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 893s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 893s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 893s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 893s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 893s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 893s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 893s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 893s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 893s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 893s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 893s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 893s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 893s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 893s Get:250 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 893s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 893s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 893s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 893s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 894s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 894s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 894s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 894s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 894s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 894s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 894s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 894s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 894s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 894s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 894s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 894s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 894s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 894s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 894s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 894s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 894s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 894s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 894s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 894s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 894s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 894s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 894s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cluster amd64 2.1.6-1 [554 kB] 894s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 894s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rpart amd64 4.1.23-1 [661 kB] 894s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nnet amd64 7.3-19-2 [112 kB] 894s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-foreign amd64 0.8.86-1 [242 kB] 894s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 894s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-data.table amd64 1.14.10+dfsg-1 [1837 kB] 894s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-backports amd64 1.4.1-1 [101 kB] 894s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-checkmate amd64 2.3.1-1 [713 kB] 894s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 894s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rstudioapi all 0.15.0-1 [277 kB] 894s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltable all 2.4.2-1 [381 kB] 894s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 894s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 894s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-chron amd64 2.3-61-2 [186 kB] 894s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 894s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-deldir amd64 2.0-4-1 [270 kB] 894s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppeigen amd64 0.3.3.9.4-1 [1189 kB] 894s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 894s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 894s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-acepack amd64 1.4.2-1 [61.3 kB] 894s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hmisc amd64 5.1-1-1 [3491 kB] 894s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 894s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 894s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 894s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 894s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 894s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 894s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 894s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 894s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 894s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 894s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 894s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 894s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 894s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 894s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 894s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 894s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-variantannotation amd64 1.48.1-1 [3527 kB] 894s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 894s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 894s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biovizbase amd64 1.50.0-1 [2665 kB] 895s Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 895s Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 895s Get:321 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-graph amd64 1.80.0-1 [1289 kB] 895s Get:322 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rbgl amd64 1.78.0+dfsg-1 [551 kB] 895s Get:323 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-organismdbi all 1.44.0+dfsg-1 [456 kB] 895s Get:324 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-broom all 1.0.5+dfsg-1 [1729 kB] 895s Get:325 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-forcats all 1.0.0-1 [369 kB] 895s Get:326 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-clipr all 0.8.0-1 [53.5 kB] 895s Get:327 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] 895s Get:328 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vroom amd64 1.6.5-1 [848 kB] 895s Get:329 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-readr amd64 2.1.5-1 [766 kB] 895s Get:330 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-haven amd64 2.5.4-1 [346 kB] 895s Get:331 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labelled all 2.12.0-2 [312 kB] 895s Get:332 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-broom.helpers all 1.14.0-2 [557 kB] 895s Get:333 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-patchwork all 1.2.0-1 [3161 kB] 895s Get:334 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggstats all 0.5.1-2 [839 kB] 895s Get:335 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggally all 2.2.1-1 [2022 kB] 895s Get:336 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ggbio all 1.50.0-1 [2939 kB] 895s Get:337 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 895s Get:338 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 895s Get:339 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 895s Get:340 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 895s Get:341 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 895s Get:342 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 895s Get:343 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 895s Get:344 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 895s Get:345 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 895s Get:346 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 895s Get:347 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 895s Get:348 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 895s Get:349 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 896s Preconfiguring packages ... 896s Fetched 501 MB in 4s (124 MB/s) 896s Selecting previously unselected package libc-dev-bin. 896s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 896s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 896s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 896s Selecting previously unselected package linux-libc-dev:amd64. 896s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 896s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 896s Selecting previously unselected package libcrypt-dev:amd64. 896s Preparing to unpack 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.../189-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 910s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 910s Selecting previously unselected package r-cran-lazyeval. 910s Preparing to unpack .../190-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 910s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 910s Selecting previously unselected package r-bioc-annotationfilter. 910s Preparing to unpack .../191-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 910s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 910s Selecting previously unselected package r-cran-generics. 910s Preparing to unpack .../192-r-cran-generics_0.1.3-1_all.deb ... 910s Unpacking r-cran-generics (0.1.3-1) ... 910s Selecting previously unselected package r-cran-magrittr. 910s Preparing to unpack .../193-r-cran-magrittr_2.0.3-1_amd64.deb ... 910s Unpacking r-cran-magrittr (2.0.3-1) ... 910s Selecting previously unselected package r-cran-fansi. 910s Preparing to unpack .../194-r-cran-fansi_1.0.5-1_amd64.deb ... 910s Unpacking r-cran-fansi (1.0.5-1) ... 910s Selecting previously unselected package r-cran-utf8. 910s Preparing to unpack .../195-r-cran-utf8_1.2.4-1_amd64.deb ... 910s Unpacking r-cran-utf8 (1.2.4-1) ... 910s Selecting previously unselected package r-cran-pillar. 910s Preparing to unpack .../196-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 910s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 910s Selecting previously unselected package r-cran-tibble. 910s Preparing to unpack .../197-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 910s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 910s Selecting previously unselected package r-cran-withr. 910s Preparing to unpack .../198-r-cran-withr_2.5.0-1_all.deb ... 910s Unpacking r-cran-withr (2.5.0-1) ... 910s Selecting previously unselected package r-cran-tidyselect. 910s Preparing to unpack .../199-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 910s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 910s Selecting previously unselected package r-cran-dplyr. 910s Preparing to unpack .../200-r-cran-dplyr_1.1.4-1_amd64.deb ... 910s Unpacking r-cran-dplyr (1.1.4-1) ... 910s Selecting previously unselected package r-cran-purrr. 910s Preparing to unpack .../201-r-cran-purrr_1.0.2-1_amd64.deb ... 910s Unpacking r-cran-purrr (1.0.2-1) ... 910s Selecting previously unselected package r-cran-stringi. 910s Preparing to unpack .../202-r-cran-stringi_1.8.3-1_amd64.deb ... 910s Unpacking r-cran-stringi (1.8.3-1) ... 910s Selecting previously unselected package r-cran-stringr. 910s Preparing to unpack .../203-r-cran-stringr_1.5.1-1_all.deb ... 910s Unpacking r-cran-stringr (1.5.1-1) ... 911s Selecting previously unselected package r-cran-tidyr. 911s Preparing to unpack .../204-r-cran-tidyr_1.3.1-1_amd64.deb ... 911s Unpacking r-cran-tidyr (1.3.1-1) ... 911s Selecting previously unselected package r-cran-dbplyr. 911s Preparing to unpack .../205-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 911s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 911s Selecting previously unselected package r-cran-filelock. 911s Preparing to unpack .../206-r-cran-filelock_1.0.3-1_amd64.deb ... 911s Unpacking r-cran-filelock (1.0.3-1) ... 911s Selecting previously unselected package r-bioc-biocfilecache. 911s Preparing to unpack .../207-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 911s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 911s Selecting previously unselected package r-bioc-biocio. 911s Preparing to unpack .../208-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 911s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 911s Selecting previously unselected package r-cran-formatr. 911s Preparing to unpack .../209-r-cran-formatr_1.14-1_all.deb ... 911s Unpacking r-cran-formatr (1.14-1) ... 911s Selecting previously unselected package r-cran-lambda.r. 911s Preparing to unpack .../210-r-cran-lambda.r_1.2.4-2build1_all.deb ... 911s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 911s Selecting previously unselected package r-cran-futile.options. 911s Preparing to unpack .../211-r-cran-futile.options_1.0.1-3build1_all.deb ... 911s Unpacking r-cran-futile.options (1.0.1-3build1) ... 911s Selecting previously unselected package r-cran-futile.logger. 911s Preparing to unpack .../212-r-cran-futile.logger_1.4.3-4build1_all.deb ... 911s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 911s Selecting previously unselected package r-cran-snow. 911s Preparing to unpack .../213-r-cran-snow_1%3a0.4.4-2_all.deb ... 911s Unpacking r-cran-snow (1:0.4.4-2) ... 911s Selecting previously unselected package r-cran-codetools. 911s Preparing to unpack .../214-r-cran-codetools_0.2-19-1_all.deb ... 911s Unpacking r-cran-codetools (0.2-19-1) ... 911s Selecting previously unselected package r-cran-bh. 911s Preparing to unpack .../215-r-cran-bh_1.84.0-1_all.deb ... 911s Unpacking r-cran-bh (1.84.0-1) ... 911s Selecting previously unselected package r-bioc-biocparallel. 911s Preparing to unpack .../216-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 911s Unpacking r-bioc-biocparallel (1.36.0-1) ... 911s Selecting previously unselected package r-cran-base64enc. 911s Preparing to unpack .../217-r-cran-base64enc_0.1-3-3_amd64.deb ... 911s Unpacking r-cran-base64enc (0.1-3-3) ... 911s Selecting previously unselected package r-cran-digest. 911s Preparing to unpack .../218-r-cran-digest_0.6.34-1_amd64.deb ... 911s Unpacking r-cran-digest (0.6.34-1) ... 911s Selecting previously unselected package r-cran-ellipsis. 911s Preparing to unpack .../219-r-cran-ellipsis_0.3.2-2_amd64.deb ... 911s Unpacking r-cran-ellipsis (0.3.2-2) ... 911s Selecting previously unselected package r-cran-htmltools. 911s Preparing to unpack .../220-r-cran-htmltools_0.5.7-1_amd64.deb ... 911s Unpacking r-cran-htmltools (0.5.7-1) ... 911s Selecting previously unselected package r-cran-evaluate. 911s Preparing to unpack .../221-r-cran-evaluate_0.23-1_all.deb ... 911s Unpacking r-cran-evaluate (0.23-1) ... 911s Selecting previously unselected package r-cran-xfun. 911s Preparing to unpack .../222-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 911s Unpacking r-cran-xfun (0.41+dfsg-1) ... 911s Selecting previously unselected package r-cran-highr. 911s Preparing to unpack .../223-r-cran-highr_0.10+dfsg-1_all.deb ... 911s Unpacking r-cran-highr (0.10+dfsg-1) ... 911s Selecting previously unselected package r-cran-yaml. 911s Preparing to unpack .../224-r-cran-yaml_2.3.8-1_amd64.deb ... 911s Unpacking r-cran-yaml (2.3.8-1) ... 911s Selecting previously unselected package libjs-mathjax. 911s Preparing to unpack .../225-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 911s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 912s Selecting previously unselected package r-cran-knitr. 912s Preparing to unpack .../226-r-cran-knitr_1.45+dfsg-1_all.deb ... 912s Unpacking r-cran-knitr (1.45+dfsg-1) ... 912s Selecting previously unselected package r-cran-jquerylib. 912s Preparing to unpack .../227-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 912s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 912s Selecting previously unselected package r-cran-fs. 912s Preparing to unpack .../228-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 912s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 912s Selecting previously unselected package r-cran-rappdirs. 912s Preparing to unpack .../229-r-cran-rappdirs_0.3.3-1_amd64.deb ... 912s Unpacking r-cran-rappdirs (0.3.3-1) ... 912s Selecting previously unselected package r-cran-sass. 912s Preparing to unpack .../230-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 912s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 912s Selecting previously unselected package r-cran-bslib. 912s Preparing to unpack .../231-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 912s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 913s Selecting previously unselected package r-cran-fontawesome. 913s Preparing to unpack .../232-r-cran-fontawesome_0.5.2-1_all.deb ... 913s Unpacking r-cran-fontawesome (0.5.2-1) ... 913s Selecting previously unselected package r-cran-tinytex. 913s Preparing to unpack .../233-r-cran-tinytex_0.49-1_all.deb ... 913s Unpacking r-cran-tinytex (0.49-1) ... 913s Selecting previously unselected package libjs-modernizr. 913s Preparing to unpack .../234-libjs-modernizr_2.6.2+ds1-5_all.deb ... 913s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 913s Selecting previously unselected package r-cran-pkgkitten. 913s Preparing to unpack .../235-r-cran-pkgkitten_0.2.3-1_all.deb ... 913s Unpacking r-cran-pkgkitten (0.2.3-1) ... 913s Selecting previously unselected package r-cran-rcpp. 913s Preparing to unpack .../236-r-cran-rcpp_1.0.12-1_amd64.deb ... 913s Unpacking r-cran-rcpp (1.0.12-1) ... 913s Selecting previously unselected package r-cran-later. 913s Preparing to unpack .../237-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 913s Unpacking r-cran-later (1.3.2+dfsg-1) ... 913s Selecting previously unselected package r-cran-promises. 913s Preparing to unpack .../238-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 913s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 913s Selecting previously unselected package r-cran-httpuv. 913s Preparing to unpack .../239-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 913s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 913s Selecting previously unselected package r-cran-xtable. 913s Preparing to unpack .../240-r-cran-xtable_1%3a1.8-4-2_all.deb ... 913s Unpacking r-cran-xtable (1:1.8-4-2) ... 913s Selecting previously unselected package r-cran-sourcetools. 913s Preparing to unpack .../241-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 913s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 913s Selecting previously unselected package r-cran-commonmark. 913s Preparing to unpack .../242-r-cran-commonmark_1.9.1-1_amd64.deb ... 913s Unpacking r-cran-commonmark (1.9.1-1) ... 913s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 913s Preparing to unpack .../243-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 913s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 913s Selecting previously unselected package r-cran-shiny. 913s Preparing to unpack .../244-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 913s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 913s Selecting previously unselected package r-cran-rmarkdown. 913s Preparing to unpack .../245-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 913s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 913s Selecting previously unselected package r-cran-bookdown. 913s Preparing to unpack .../246-r-cran-bookdown_0.37+dfsg-1_all.deb ... 913s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 913s Selecting previously unselected package r-cran-biocmanager. 914s Preparing to unpack .../247-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 914s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 914s Selecting previously unselected package tex-common. 914s Preparing to unpack .../248-tex-common_6.18_all.deb ... 914s Unpacking tex-common (6.18) ... 914s Selecting previously unselected package t1utils. 914s Preparing to unpack .../249-t1utils_1.41-4build2_amd64.deb ... 914s Unpacking t1utils (1.41-4build2) ... 914s Selecting previously unselected package texlive-binaries. 914s Preparing to unpack .../250-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 914s Unpacking texlive-binaries (2023.20230311.66589-9) ... 914s Selecting previously unselected package texlive-base. 914s Preparing to unpack .../251-texlive-base_2023.20240207-1_all.deb ... 914s Unpacking texlive-base (2023.20240207-1) ... 915s Selecting previously unselected package texlive-latex-base. 915s Preparing to unpack .../252-texlive-latex-base_2023.20240207-1_all.deb ... 915s Unpacking texlive-latex-base (2023.20240207-1) ... 916s Selecting previously unselected package texlive-bibtex-extra. 916s Preparing to unpack .../253-texlive-bibtex-extra_2023.20240207-1_all.deb ... 916s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 919s Selecting previously unselected package r-bioc-biocstyle. 919s Preparing to unpack .../254-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 919s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 919s Selecting previously unselected package r-cran-xml. 919s Preparing to unpack .../255-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 919s Unpacking r-cran-xml (3.99-0.16.1-1) ... 919s Selecting previously unselected package r-cran-hms. 919s Preparing to unpack .../256-r-cran-hms_1.1.3-1_all.deb ... 919s Unpacking r-cran-hms (1.1.3-1) ... 919s Selecting previously unselected package r-cran-prettyunits. 919s Preparing to unpack .../257-r-cran-prettyunits_1.2.0-1_all.deb ... 919s Unpacking r-cran-prettyunits (1.2.0-1) ... 920s Selecting previously unselected package r-cran-progress. 920s Preparing to unpack .../258-r-cran-progress_1.2.3-1_all.deb ... 920s Unpacking r-cran-progress (1.2.3-1) ... 920s Selecting previously unselected package r-cran-xml2. 920s Preparing to unpack .../259-r-cran-xml2_1.3.6-1_amd64.deb ... 920s Unpacking r-cran-xml2 (1.3.6-1) ... 920s Selecting previously unselected package r-bioc-biomart. 920s Preparing to unpack .../260-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 920s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 920s Selecting previously unselected package r-cran-farver. 920s Preparing to unpack .../261-r-cran-farver_2.1.1-1_amd64.deb ... 920s Unpacking r-cran-farver (2.1.1-1) ... 920s Selecting previously unselected package r-cran-labeling. 920s Preparing to unpack .../262-r-cran-labeling_0.4.3-1_all.deb ... 920s Unpacking r-cran-labeling (0.4.3-1) ... 920s Selecting previously unselected package r-cran-colorspace. 920s Preparing to unpack .../263-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 920s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 920s Selecting previously unselected package r-cran-munsell. 920s Preparing to unpack .../264-r-cran-munsell_0.5.0-2build1_all.deb ... 920s Unpacking r-cran-munsell (0.5.0-2build1) ... 920s Selecting previously unselected package r-cran-rcolorbrewer. 920s Preparing to unpack .../265-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 920s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 920s Selecting previously unselected package r-cran-viridislite. 920s Preparing to unpack .../266-r-cran-viridislite_0.4.2-2_all.deb ... 920s Unpacking r-cran-viridislite (0.4.2-2) ... 920s Selecting previously unselected package r-cran-scales. 920s Preparing to unpack .../267-r-cran-scales_1.3.0-1_all.deb ... 920s Unpacking r-cran-scales (1.3.0-1) ... 920s Selecting previously unselected package r-cran-gtable. 920s Preparing to unpack .../268-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 920s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 920s Selecting previously unselected package r-cran-isoband. 920s Preparing to unpack .../269-r-cran-isoband_0.2.7-1_amd64.deb ... 920s Unpacking r-cran-isoband (0.2.7-1) ... 920s Selecting previously unselected package r-cran-mass. 920s Preparing to unpack .../270-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 920s Unpacking r-cran-mass (7.3-60.0.1-1) ... 920s Selecting previously unselected package r-cran-lattice. 920s Preparing to unpack .../271-r-cran-lattice_0.22-5-1_amd64.deb ... 920s Unpacking r-cran-lattice (0.22-5-1) ... 920s Selecting previously unselected package r-cran-nlme. 920s Preparing to unpack .../272-r-cran-nlme_3.1.164-1_amd64.deb ... 920s Unpacking r-cran-nlme (3.1.164-1) ... 920s Selecting previously unselected package r-cran-matrix. 920s Preparing to unpack .../273-r-cran-matrix_1.6-5-1_amd64.deb ... 920s Unpacking r-cran-matrix (1.6-5-1) ... 920s Selecting previously unselected package r-cran-mgcv. 920s Preparing to unpack .../274-r-cran-mgcv_1.9-1-1_amd64.deb ... 920s Unpacking r-cran-mgcv (1.9-1-1) ... 920s Selecting previously unselected package r-cran-ggplot2. 920s Preparing to unpack .../275-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 920s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 920s Selecting previously unselected package r-cran-cluster. 920s Preparing to unpack .../276-r-cran-cluster_2.1.6-1_amd64.deb ... 920s Unpacking r-cran-cluster (2.1.6-1) ... 921s Selecting previously unselected package r-cran-survival. 921s Preparing to unpack .../277-r-cran-survival_3.5-8-1_amd64.deb ... 921s Unpacking r-cran-survival (3.5-8-1) ... 921s Selecting previously unselected package r-cran-rpart. 921s Preparing to unpack .../278-r-cran-rpart_4.1.23-1_amd64.deb ... 921s Unpacking r-cran-rpart (4.1.23-1) ... 921s Selecting previously unselected package r-cran-nnet. 921s Preparing to unpack .../279-r-cran-nnet_7.3-19-2_amd64.deb ... 921s Unpacking r-cran-nnet (7.3-19-2) ... 921s Selecting previously unselected package r-cran-foreign. 921s Preparing to unpack .../280-r-cran-foreign_0.8.86-1_amd64.deb ... 921s Unpacking r-cran-foreign (0.8.86-1) ... 921s Selecting previously unselected package r-cran-gridextra. 921s Preparing to unpack .../281-r-cran-gridextra_2.3-3build1_all.deb ... 921s Unpacking r-cran-gridextra (2.3-3build1) ... 921s Selecting previously unselected package r-cran-data.table. 921s Preparing to unpack .../282-r-cran-data.table_1.14.10+dfsg-1_amd64.deb ... 921s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 921s Selecting previously unselected package r-cran-backports. 921s Preparing to unpack .../283-r-cran-backports_1.4.1-1_amd64.deb ... 921s Unpacking r-cran-backports (1.4.1-1) ... 921s Selecting previously unselected package r-cran-checkmate. 921s Preparing to unpack .../284-r-cran-checkmate_2.3.1-1_amd64.deb ... 921s Unpacking r-cran-checkmate (2.3.1-1) ... 921s Selecting previously unselected package r-cran-htmlwidgets. 921s Preparing to unpack .../285-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 921s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 921s Selecting previously unselected package r-cran-rstudioapi. 921s Preparing to unpack .../286-r-cran-rstudioapi_0.15.0-1_all.deb ... 921s Unpacking r-cran-rstudioapi (0.15.0-1) ... 921s Selecting previously unselected package r-cran-htmltable. 921s Preparing to unpack .../287-r-cran-htmltable_2.4.2-1_all.deb ... 921s Unpacking r-cran-htmltable (2.4.2-1) ... 921s Selecting previously unselected package r-cran-viridis. 921s Preparing to unpack .../288-r-cran-viridis_0.6.5-1_all.deb ... 921s Unpacking r-cran-viridis (0.6.5-1) ... 921s Selecting previously unselected package r-cran-formula. 921s Preparing to unpack .../289-r-cran-formula_1.2-5-1_all.deb ... 921s Unpacking r-cran-formula (1.2-5-1) ... 921s Selecting previously unselected package r-cran-chron. 921s Preparing to unpack .../290-r-cran-chron_2.3-61-2_amd64.deb ... 921s Unpacking r-cran-chron (2.3-61-2) ... 921s Selecting previously unselected package r-cran-jpeg. 921s Preparing to unpack .../291-r-cran-jpeg_0.1-10-1_amd64.deb ... 921s Unpacking r-cran-jpeg (0.1-10-1) ... 921s Selecting previously unselected package r-cran-deldir. 921s Preparing to unpack .../292-r-cran-deldir_2.0-4-1_amd64.deb ... 921s Unpacking r-cran-deldir (2.0-4-1) ... 921s Selecting previously unselected package r-cran-rcppeigen. 921s Preparing to unpack .../293-r-cran-rcppeigen_0.3.3.9.4-1_amd64.deb ... 921s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 922s Selecting previously unselected package r-cran-interp. 922s Preparing to unpack .../294-r-cran-interp_1.1-6-1_amd64.deb ... 922s Unpacking r-cran-interp (1.1-6-1) ... 922s Selecting previously unselected package r-cran-latticeextra. 922s Preparing to unpack .../295-r-cran-latticeextra_0.6-30-1_all.deb ... 922s Unpacking r-cran-latticeextra (0.6-30-1) ... 922s Selecting previously unselected package r-cran-acepack. 922s Preparing to unpack .../296-r-cran-acepack_1.4.2-1_amd64.deb ... 922s Unpacking r-cran-acepack (1.4.2-1) ... 922s Selecting previously unselected package r-cran-hmisc. 922s Preparing to unpack .../297-r-cran-hmisc_5.1-1-1_amd64.deb ... 922s Unpacking r-cran-hmisc (5.1-1-1) ... 922s Selecting previously unselected package r-cran-dichromat. 922s Preparing to unpack .../298-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 922s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 922s Selecting previously unselected package r-cran-matrixstats. 922s Preparing to unpack .../299-r-cran-matrixstats_1.2.0-1_amd64.deb ... 922s Unpacking r-cran-matrixstats (1.2.0-1) ... 922s Selecting previously unselected package r-bioc-matrixgenerics. 922s Preparing to unpack .../300-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 922s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 922s Selecting previously unselected package r-cran-abind. 922s Preparing to unpack .../301-r-cran-abind_1.4-5-2_all.deb ... 922s Unpacking r-cran-abind (1.4-5-2) ... 922s Selecting previously unselected package r-bioc-s4arrays. 922s Preparing to unpack .../302-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 922s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 922s Selecting previously unselected package r-bioc-sparsearray. 922s Preparing to unpack .../303-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 922s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 922s Selecting previously unselected package r-bioc-delayedarray. 922s Preparing to unpack .../304-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 922s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 922s Selecting previously unselected package r-bioc-summarizedexperiment. 922s Preparing to unpack .../305-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 922s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 922s Selecting previously unselected package r-bioc-rhtslib. 922s Preparing to unpack .../306-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 922s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 922s Selecting previously unselected package r-bioc-rsamtools. 922s Preparing to unpack .../307-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 922s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 922s Selecting previously unselected package r-bioc-genomicalignments. 922s Preparing to unpack .../308-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 922s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 922s Selecting previously unselected package r-cran-rjson. 922s Preparing to unpack .../309-r-cran-rjson_0.2.21-1_amd64.deb ... 922s Unpacking r-cran-rjson (0.2.21-1) ... 922s Selecting previously unselected package r-cran-restfulr. 922s Preparing to unpack .../310-r-cran-restfulr_0.0.15-1_amd64.deb ... 922s Unpacking r-cran-restfulr (0.0.15-1) ... 922s Selecting previously unselected package r-bioc-rtracklayer. 922s Preparing to unpack .../311-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 922s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 923s Selecting previously unselected package r-bioc-genomicfeatures. 923s Preparing to unpack .../312-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 923s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 923s Selecting previously unselected package r-bioc-bsgenome. 923s Preparing to unpack .../313-r-bioc-bsgenome_1.70.2-1_all.deb ... 923s Unpacking r-bioc-bsgenome (1.70.2-1) ... 923s Selecting previously unselected package r-bioc-variantannotation. 923s Preparing to unpack .../314-r-bioc-variantannotation_1.48.1-1_amd64.deb ... 923s Unpacking r-bioc-variantannotation (1.48.1-1) ... 923s Selecting previously unselected package r-bioc-protgenerics. 923s Preparing to unpack .../315-r-bioc-protgenerics_1.34.0-1_all.deb ... 923s Unpacking r-bioc-protgenerics (1.34.0-1) ... 923s Selecting previously unselected package r-bioc-ensembldb. 923s Preparing to unpack .../316-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 923s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 923s Selecting previously unselected package r-bioc-biovizbase. 923s Preparing to unpack .../317-r-bioc-biovizbase_1.50.0-1_amd64.deb ... 923s Unpacking r-bioc-biovizbase (1.50.0-1) ... 923s Selecting previously unselected package r-cran-plyr. 923s Preparing to unpack .../318-r-cran-plyr_1.8.9-1_amd64.deb ... 923s Unpacking r-cran-plyr (1.8.9-1) ... 923s Selecting previously unselected package r-cran-reshape2. 923s Preparing to unpack .../319-r-cran-reshape2_1.4.4-2build1_amd64.deb ... 923s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 923s Selecting previously unselected package r-bioc-graph. 923s Preparing to unpack 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previously unselected package r-cran-tzdb. 923s Preparing to unpack .../326-r-cran-tzdb_0.4.0-2_amd64.deb ... 923s Unpacking r-cran-tzdb (0.4.0-2) ... 923s Selecting previously unselected package r-cran-vroom. 923s Preparing to unpack .../327-r-cran-vroom_1.6.5-1_amd64.deb ... 923s Unpacking r-cran-vroom (1.6.5-1) ... 923s Selecting previously unselected package r-cran-readr. 923s Preparing to unpack .../328-r-cran-readr_2.1.5-1_amd64.deb ... 923s Unpacking r-cran-readr (2.1.5-1) ... 924s Selecting previously unselected package r-cran-haven. 924s Preparing to unpack .../329-r-cran-haven_2.5.4-1_amd64.deb ... 924s Unpacking r-cran-haven (2.5.4-1) ... 924s Selecting previously unselected package r-cran-labelled. 924s Preparing to unpack .../330-r-cran-labelled_2.12.0-2_all.deb ... 924s Unpacking r-cran-labelled (2.12.0-2) ... 924s Selecting previously unselected package r-cran-broom.helpers. 924s Preparing to unpack .../331-r-cran-broom.helpers_1.14.0-2_all.deb ... 924s Unpacking 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link group f95) doesn't exist 930s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 930s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 930s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 930s Setting up r-cran-bitops (1.0-7-1) ... 930s Setting up r-cran-rprojroot (2.0.4-1) ... 930s Setting up r-cran-bit64 (4.0.5-1) ... 930s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 930s Setting up r-cran-dichromat (1:2.0-0.1-1) ... 930s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 930s Setting up r-cran-deldir (2.0-4-1) ... 930s Setting up r-cran-askpass (1.2.0-1) ... 930s Setting up r-cran-fastmap (1.1.1-1) ... 930s Setting up r-cran-png (0.1-8-1) ... 930s Setting up r-bioc-biobase (2.62.0-1) ... 930s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 930s Setting up r-cran-rstudioapi (0.15.0-1) ... 930s Setting up r-cran-pkgconfig 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(12.10ubuntu1) ... 930s Setting up r-bioc-iranges (2.36.0-1) ... 930s Setting up r-cran-rjson (0.2.21-1) ... 930s Setting up r-cran-tzdb (0.4.0-2) ... 930s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 930s Setting up r-cran-restfulr (0.0.15-1) ... 930s Setting up r-cran-vctrs (0.6.5-1) ... 930s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 930s Setting up r-bioc-graph (1.80.0-1) ... 930s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 930s Setting up r-cran-ellipsis (0.3.2-2) ... 930s Setting up r-bioc-rbgl (1.78.0+dfsg-1) ... 930s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 930s Setting up r-base-dev (4.3.2-1build1) ... 930s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 930s Setting up r-cran-stringr (1.5.1-1) ... 930s Setting up r-bioc-biocparallel (1.36.0-1) ... 930s Setting up r-cran-callr (3.7.3-2) ... 930s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 930s Setting up r-cran-desc (1.4.3-1) ... 930s Setting up r-cran-xml2 (1.3.6-1) ... 930s Setting up r-cran-munsell (0.5.0-2build1) ... 930s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 930s Setting up r-cran-survival (3.5-8-1) ... 930s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 930s Setting up r-cran-forcats (1.0.0-1) ... 930s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 930s Setting up texlive-bibtex-extra (2023.20240207-1) ... 930s Setting up r-cran-reshape2 (1.4.4-2build1) ... 930s Setting up r-cran-interp (1.1-6-1) ... 930s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 930s Setting up r-cran-httr (1.4.7+dfsg-1) ... 930s Setting up r-cran-gridextra (2.3-3build1) ... 930s Setting up r-cran-hms (1.1.3-1) ... 930s Setting up r-cran-scales (1.3.0-1) ... 930s Setting up r-cran-memoise (2.0.1-1) ... 930s Setting up r-cran-promises (1.2.1+dfsg-1) ... 930s Setting up r-cran-purrr (1.0.2-1) ... 930s Setting up r-cran-blob (1.2.4-1) ... 930s Setting up r-cran-htmltools (0.5.7-1) ... 930s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 930s Setting up r-bioc-xvector (0.42.0-1) ... 930s Setting up 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(2.1.5-1) ... 930s Setting up r-cran-waldo (0.5.2-1build1) ... 930s Setting up r-cran-tidyr (1.3.1-1) ... 930s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 930s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 930s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 930s Setting up r-cran-patchwork (1.2.0-1) ... 930s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 930s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 930s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 930s Setting up r-cran-haven (2.5.4-1) ... 930s Setting up r-bioc-annotationdbi (1.64.1-1) ... 930s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 930s Setting up r-cran-testthat (3.2.1-1) ... 930s Setting up r-cran-broom (1.0.5+dfsg-1) ... 930s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 930s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 930s Setting up r-cran-labelled (2.12.0-2) ... 930s Setting up r-bioc-genomicalignments (1.38.2-1) ... 930s Setting up r-cran-bookdown (0.37+dfsg-1) ... 930s Setting up r-bioc-rtracklayer (1.62.0-1) ... 930s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 930s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 930s Setting up r-cran-broom.helpers (1.14.0-2) ... 930s Setting up r-bioc-bsgenome (1.70.2-1) ... 930s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 930s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 930s Setting up r-bioc-organismdbi (1.44.0+dfsg-1) ... 930s Setting up r-cran-ggstats (0.5.1-2) ... 930s Setting up r-bioc-variantannotation (1.48.1-1) ... 930s Setting up r-cran-ggally (2.2.1-1) ... 930s Setting up r-cran-htmltable (2.4.2-1) ... 930s Setting up r-cran-hmisc (5.1-1-1) ... 930s Setting up r-bioc-biovizbase (1.50.0-1) ... 930s Setting up r-bioc-ggbio (1.50.0-1) ... 930s Processing triggers for libc-bin (2.39-0ubuntu2) ... 930s Processing triggers for man-db (2.12.0-3) ... 932s Processing triggers for install-info (7.1-3) ... 932s Processing triggers for tex-common (6.18) ... 932s Running updmap-sys. This may take some time... done. 932s Running mktexlsr /var/lib/texmf ... done. 933s Building format(s) --all. 964s This may take some time... done. 966s Reading package lists... 966s Building dependency tree... 966s Reading state information... 967s Starting pkgProblemResolver with broken count: 0 967s Starting 2 pkgProblemResolver with broken count: 0 967s Done 967s The following NEW packages will be installed: 967s autopkgtest-satdep 967s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 967s Need to get 0 B/696 B of archives. 967s After this operation, 0 B of additional disk space will be used. 967s Get:1 /tmp/autopkgtest.nzalbh/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 968s Selecting previously unselected package autopkgtest-satdep. 968s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 127528 files and directories currently installed.) 968s Preparing to unpack .../2-autopkgtest-satdep.deb ... 968s Unpacking autopkgtest-satdep (0) ... 968s Setting up autopkgtest-satdep (0) ... 969s (Reading database ... 127528 files and directories currently installed.) 969s Removing autopkgtest-satdep (0) ... 970s autopkgtest [03:02:36]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 970s autopkgtest [03:02:36]: test pkg-r-autopkgtest: [----------------------- 970s Test: Try to load the R library ggbio 970s 970s R version 4.3.2 (2023-10-31) -- "Eye Holes" 970s Copyright (C) 2023 The R Foundation for Statistical Computing 970s Platform: x86_64-pc-linux-gnu (64-bit) 970s 970s R is free software and comes with ABSOLUTELY NO WARRANTY. 970s You are welcome to redistribute it under certain conditions. 970s Type 'license()' or 'licence()' for distribution details. 970s 970s R is a collaborative project with many contributors. 970s Type 'contributors()' for more information and 970s 'citation()' on how to cite R or R packages in publications. 970s 970s Type 'demo()' for some demos, 'help()' for on-line help, or 970s 'help.start()' for an HTML browser interface to help. 970s Type 'q()' to quit R. 970s 970s > library('ggbio') 970s Loading required package: BiocGenerics 970s 970s Attaching package: ‘BiocGenerics’ 970s 970s The following objects are masked from ‘package:stats’: 970s 970s IQR, mad, sd, var, xtabs 970s 970s The following objects are masked from ‘package:base’: 970s 970s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 970s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 970s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 970s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 970s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 970s table, tapply, union, unique, unsplit, which.max, which.min 970s 970s Loading required package: ggplot2 971s Registered S3 method overwritten by 'GGally': 971s method from 971s +.gg ggplot2 984s Need specific help about ggbio? try mailing 984s the maintainer or visit https://lawremi.github.io/ggbio/ 984s 984s Attaching package: 'ggbio' 984s 984s The following objects are masked from 'package:ggplot2': 984s 984s geom_bar, geom_rect, geom_segment, ggsave, stat_bin, stat_identity, 984s xlim 984s 984s > 984s > 984s Other tests are currently unsupported! 984s They will be progressively added. 985s autopkgtest [03:02:51]: test pkg-r-autopkgtest: -----------------------] 985s pkg-r-autopkgtest PASS 985s autopkgtest [03:02:51]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 985s autopkgtest [03:02:51]: @@@@@@@@@@@@@@@@@@@@ summary 985s pkg-r-autopkgtest PASS 995s Creating nova instance adt-noble-i386-r-bioc-ggbio-20240322-024626-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...