0s autopkgtest [13:06:10]: starting date and time: 2024-03-21 13:06:10+0000 0s autopkgtest [13:06:10]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [13:06:10]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.pwlkdzpx/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-bioc-variantannotation --apt-upgrade r-bioc-ggbio --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-bioc-variantannotation/1.48.1-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-60.secgroup --name adt-noble-i386-r-bioc-ggbio-20240321-130610-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 293s autopkgtest [13:11:03]: testbed dpkg architecture: amd64 293s autopkgtest [13:11:03]: testbed apt version: 2.7.12 293s autopkgtest [13:11:03]: test architecture: i386 293s autopkgtest [13:11:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup 294s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 294s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3818 kB] 294s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 294s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 294s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 294s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [460 kB] 294s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [697 kB] 294s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 294s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 294s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 294s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 294s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4242 kB] 294s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1281 kB] 294s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 294s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 294s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 294s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 297s Fetched 11.3 MB in 1s (7719 kB/s) 297s Reading package lists... 299s Reading package lists... 299s Building dependency tree... 299s Reading state information... 300s Calculating upgrade... 300s The following packages will be upgraded: 300s debianutils linux-firmware 300s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 300s Need to get 476 MB of archives. 300s After this operation, 5724 kB of additional disk space will be used. 300s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.17 [89.8 kB] 300s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-firmware amd64 20240318.git3b128b60-0ubuntu1 [475 MB] 304s Fetched 476 MB in 4s (128 MB/s) 304s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 304s Preparing to unpack .../debianutils_5.17_amd64.deb ... 304s Unpacking debianutils (5.17) over (5.16) ... 304s Setting up debianutils (5.17) ... 304s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 304s Preparing to unpack .../linux-firmware_20240318.git3b128b60-0ubuntu1_amd64.deb ... 304s Unpacking linux-firmware (20240318.git3b128b60-0ubuntu1) over (20240202.git36777504-0ubuntu1) ... 307s Setting up linux-firmware (20240318.git3b128b60-0ubuntu1) ... 307s Processing triggers for man-db (2.12.0-3) ... 308s Processing triggers for initramfs-tools (0.142ubuntu20) ... 308s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 308s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 316s Reading package lists... 317s Building dependency tree... 317s Reading state information... 317s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 317s sh: Attempting to set up Debian/Ubuntu apt sources automatically 317s sh: Distribution appears to be Ubuntu 318s Reading package lists... 318s Building dependency tree... 318s Reading state information... 319s eatmydata is already the newest version (131-1). 319s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 319s Reading package lists... 319s Building dependency tree... 319s Reading state information... 319s dbus is already the newest version (1.14.10-4ubuntu1). 319s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 319s Reading package lists... 319s Building dependency tree... 319s Reading state information... 320s rng-tools-debian is already the newest version (2.4). 320s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 320s Reading package lists... 320s Building dependency tree... 320s Reading state information... 320s The following packages will be REMOVED: 320s cloud-init* python3-configobj* python3-debconf* 321s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 321s After this operation, 3252 kB disk space will be freed. 321s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 321s Removing cloud-init (24.1.1-0ubuntu1) ... 321s Removing python3-configobj (5.0.8-3) ... 321s Removing python3-debconf (1.5.86) ... 321s Processing triggers for man-db (2.12.0-3) ... 322s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71476 files and directories currently installed.) 322s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 322s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 322s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 322s invoke-rc.d: policy-rc.d denied execution of try-restart. 322s Reading package lists... 323s Building dependency tree... 323s Reading state information... 323s linux-generic is already the newest version (6.8.0-11.11+1). 323s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 323s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 323s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 323s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 325s Reading package lists... 325s Reading package lists... 325s Building dependency tree... 325s Reading state information... 326s Calculating upgrade... 326s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 326s Reading package lists... 326s Building dependency tree... 326s Reading state information... 326s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 326s autopkgtest [13:11:36]: rebooting testbed after setup commands that affected boot 365s autopkgtest [13:12:15]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 366s autopkgtest [13:12:16]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-ggbio 367s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ggbio 1.50.0-1 (dsc) [2564 B] 367s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ggbio 1.50.0-1 (tar) [3252 kB] 367s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ggbio 1.50.0-1 (diff) [5428 B] 367s gpgv: Signature made Fri Dec 8 14:52:19 2023 UTC 367s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 367s gpgv: issuer "tille@debian.org" 367s gpgv: Can't check signature: No public key 367s dpkg-source: warning: cannot verify inline signature for ./r-bioc-ggbio_1.50.0-1.dsc: no acceptable signature found 367s autopkgtest [13:12:17]: testing package r-bioc-ggbio version 1.50.0-1 367s autopkgtest [13:12:17]: build not needed 370s autopkgtest [13:12:20]: test pkg-r-autopkgtest: preparing testbed 375s Note, using file '/tmp/autopkgtest.Qb5R6Y/1-autopkgtest-satdep.dsc' to get the build dependencies 375s Reading package lists... 376s Building dependency tree... 376s Reading state information... 376s Starting pkgProblemResolver with broken count: 0 376s Starting 2 pkgProblemResolver with broken count: 0 376s Done 376s The following NEW packages will be installed: 376s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 376s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 376s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 376s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 376s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 376s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 376s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 376s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 376s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 376s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 376s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 376s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 376s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 376s libjs-highlight.js libjs-jquery libjs-jquery-datatables 376s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 376s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 376s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 376s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 376s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 376s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 376s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 376s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 376s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 376s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 376s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 376s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 376s linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css 376s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 376s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter 376s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 376s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings 376s r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray r-bioc-ensembldb 376s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 376s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-ggbio r-bioc-graph 376s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-organismdbi 376s r-bioc-protgenerics r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools 376s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 376s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 376s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 376s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 376s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-broom 376s r-cran-broom.helpers r-cran-bslib r-cran-cachem r-cran-callr 376s r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr r-cran-cluster 376s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 376s r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr 376s r-cran-deldir r-cran-desc r-cran-dichromat r-cran-diffobj r-cran-digest 376s r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver 376s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-forcats 376s r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger 376s r-cran-futile.options r-cran-generics r-cran-ggally r-cran-ggplot2 376s r-cran-ggstats r-cran-glue r-cran-gridextra r-cran-gtable r-cran-haven 376s r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools 376s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-interp r-cran-isoband 376s r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 376s r-cran-labelled r-cran-lambda.r r-cran-later r-cran-lattice 376s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 376s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 376s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet 376s r-cran-openssl r-cran-patchwork r-cran-pillar r-cran-pkgbuild 376s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 376s r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 376s r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs 376s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl r-cran-readr 376s r-cran-rematch2 r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang 376s r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite 376s r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 376s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 376s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 376s r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite 376s r-cran-vroom r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 376s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 376s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 376s xdg-utils zip zlib1g-dev 376s 0 upgraded, 349 newly installed, 0 to remove and 0 not upgraded. 376s Need to get 501 MB of archives. 376s After this operation, 1470 MB of additional disk space will be used. 376s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 376s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 377s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 377s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 377s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 377s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 377s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 377s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 377s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 377s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 377s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 377s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 377s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 377s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 377s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 377s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 377s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 377s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 377s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 377s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 377s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 377s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 377s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 377s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 377s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 377s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 377s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 377s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 377s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 377s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 377s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 377s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 377s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 377s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 377s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 377s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 377s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 377s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 377s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 377s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 377s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 377s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 377s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 377s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 377s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 377s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 377s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 377s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 377s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 377s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 377s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 377s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 377s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 377s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 377s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 377s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 377s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 377s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 377s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 377s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 377s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 377s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 377s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 377s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 377s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 377s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 377s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 377s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 377s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 377s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 377s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 377s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 377s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 377s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 377s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 377s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 377s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 377s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 377s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 377s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 377s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 377s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 377s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 377s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 377s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 377s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 377s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 377s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 377s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 377s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 377s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 377s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 377s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 377s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 377s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 377s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 377s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 377s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 377s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 377s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 377s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 377s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 377s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 377s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 377s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 377s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 377s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 377s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 377s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 377s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 377s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 377s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 377s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 377s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 377s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 378s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 378s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 378s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 378s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 378s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 378s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 378s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 378s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 378s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 378s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 378s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 378s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 378s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 378s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 378s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 378s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 378s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 378s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 378s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 378s Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 378s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 378s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 378s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 378s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 378s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 378s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 378s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 378s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 378s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 378s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 378s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 378s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 378s Get:148 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 378s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 378s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 378s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 378s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 378s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 378s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 378s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 378s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 378s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 378s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 378s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 378s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 378s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 378s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 378s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 378s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 378s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 378s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 378s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 378s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 378s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 378s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 378s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 378s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 378s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 378s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 378s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 378s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 378s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 378s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 378s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 378s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 378s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 378s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 378s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 378s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 378s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 378s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 378s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 378s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 378s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 378s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 378s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 378s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 378s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 378s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 378s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 378s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 378s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 378s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 378s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 378s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 378s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 378s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 378s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 378s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 378s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 378s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 378s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 378s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 378s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 378s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 378s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 378s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 378s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 378s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 378s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 378s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 378s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 378s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 378s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 378s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 378s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 378s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 378s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 378s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 378s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 378s Get:226 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 378s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 378s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 378s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 378s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 378s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 378s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 379s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 379s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 379s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 379s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 379s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 379s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 379s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 379s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 379s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 379s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 379s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 379s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 379s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 379s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 379s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 379s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 379s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 379s Get:250 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 379s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 379s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 379s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 379s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 379s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 379s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 379s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 379s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 379s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 379s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 379s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 379s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 379s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 379s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 379s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 379s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 379s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 379s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 379s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 379s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 379s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 379s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 379s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 379s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 379s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 380s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 380s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cluster amd64 2.1.6-1 [554 kB] 380s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 380s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rpart amd64 4.1.23-1 [661 kB] 380s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nnet amd64 7.3-19-2 [112 kB] 380s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-foreign amd64 0.8.86-1 [242 kB] 380s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 380s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-data.table amd64 1.14.10+dfsg-1 [1837 kB] 380s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-backports amd64 1.4.1-1 [101 kB] 380s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-checkmate amd64 2.3.1-1 [713 kB] 380s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 380s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rstudioapi all 0.15.0-1 [277 kB] 380s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltable all 2.4.2-1 [381 kB] 380s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 380s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 380s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-chron amd64 2.3-61-2 [186 kB] 380s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 380s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-deldir amd64 2.0-4-1 [270 kB] 380s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppeigen amd64 0.3.3.9.4-1 [1189 kB] 380s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 380s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 380s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-acepack amd64 1.4.2-1 [61.3 kB] 380s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hmisc amd64 5.1-1-1 [3491 kB] 380s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 380s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 380s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 380s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 380s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 380s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 380s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 380s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 380s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 380s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 380s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 380s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 380s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 380s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 380s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 380s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 380s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-variantannotation amd64 1.48.1-1 [3527 kB] 380s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 380s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 380s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biovizbase amd64 1.50.0-1 [2665 kB] 380s Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 380s Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 380s Get:321 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-graph amd64 1.80.0-1 [1289 kB] 380s Get:322 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rbgl amd64 1.78.0+dfsg-1 [551 kB] 380s Get:323 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-organismdbi all 1.44.0+dfsg-1 [456 kB] 380s Get:324 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-broom all 1.0.5+dfsg-1 [1729 kB] 380s Get:325 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-forcats all 1.0.0-1 [369 kB] 380s Get:326 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-clipr all 0.8.0-1 [53.5 kB] 380s Get:327 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] 380s Get:328 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vroom amd64 1.6.5-1 [848 kB] 380s Get:329 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-readr amd64 2.1.5-1 [766 kB] 380s Get:330 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-haven amd64 2.5.4-1 [346 kB] 380s Get:331 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labelled all 2.12.0-2 [312 kB] 380s Get:332 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-broom.helpers all 1.14.0-2 [557 kB] 380s Get:333 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-patchwork all 1.2.0-1 [3161 kB] 380s Get:334 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggstats all 0.5.1-2 [839 kB] 380s Get:335 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggally all 2.2.1-1 [2022 kB] 380s Get:336 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ggbio all 1.50.0-1 [2939 kB] 380s Get:337 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 380s Get:338 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 380s Get:339 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 380s Get:340 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 380s Get:341 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 380s Get:342 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 380s Get:343 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 380s Get:344 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 380s Get:345 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 380s Get:346 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 380s Get:347 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 380s Get:348 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 380s Get:349 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 381s Preconfiguring packages ... 381s Fetched 501 MB in 4s (128 MB/s) 381s Selecting previously unselected package libc-dev-bin. 381s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71421 files and directories currently installed.) 381s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 381s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 381s Selecting previously unselected package linux-libc-dev:amd64. 381s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 381s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 382s Selecting previously unselected package libcrypt-dev:amd64. 382s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 382s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 382s Selecting previously unselected package libtirpc-dev:amd64. 382s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 382s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 382s Selecting previously unselected package libnsl-dev:amd64. 382s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 382s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 382s Selecting previously unselected package rpcsvc-proto. 382s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 382s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 382s Selecting previously unselected package libc6-dev:amd64. 382s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 382s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 382s Selecting previously unselected package libisl23:amd64. 382s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 382s Unpacking libisl23:amd64 (0.26-3) ... 382s Selecting previously unselected package libmpc3:amd64. 382s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 382s Unpacking libmpc3:amd64 (1.3.1-1) ... 382s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 382s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 382s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 382s Selecting previously unselected package cpp-13. 382s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 382s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 382s Selecting previously unselected package cpp-x86-64-linux-gnu. 382s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 382s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 382s Selecting previously unselected package cpp. 382s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 382s Unpacking cpp (4:13.2.0-7ubuntu1) ... 382s Selecting previously unselected package libcc1-0:amd64. 382s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 382s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 382s Selecting previously unselected package libgomp1:amd64. 382s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 382s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 382s Selecting previously unselected package libitm1:amd64. 382s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 382s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 382s Selecting previously unselected package libatomic1:amd64. 382s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 382s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 382s Selecting previously unselected package libasan8:amd64. 382s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 382s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 382s Selecting previously unselected package liblsan0:amd64. 382s 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libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 384s Selecting previously unselected package fontconfig. 384s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 384s Unpacking fontconfig (2.15.0-1ubuntu1) ... 384s Selecting previously unselected package fonts-font-awesome. 384s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 384s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 384s Selecting previously unselected package fonts-glyphicons-halflings. 384s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 384s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 384s Selecting previously unselected package fonts-lmodern. 384s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 384s Unpacking fonts-lmodern (2.005-1) ... 384s Selecting previously unselected package fonts-mathjax. 384s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 384s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 385s Selecting previously unselected package libgfortran5:amd64. 385s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 385s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 385s Selecting previously unselected package libgfortran-13-dev:amd64. 385s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 385s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 385s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 385s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 385s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 385s Selecting previously unselected package gfortran-13. 385s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 385s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 385s Selecting previously unselected package gfortran-x86-64-linux-gnu. 385s Preparing to unpack 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(1.83.0.1ubuntu2) ... 388s Selecting previously unselected package libbz2-dev:amd64. 388s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 388s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 388s Selecting previously unselected package libpixman-1-0:amd64. 388s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_amd64.deb ... 388s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 388s Selecting previously unselected package libxcb-render0:amd64. 388s Preparing to unpack .../061-libxcb-render0_1.15-1_amd64.deb ... 388s Unpacking libxcb-render0:amd64 (1.15-1) ... 388s Selecting previously unselected package libxcb-shm0:amd64. 388s Preparing to unpack .../062-libxcb-shm0_1.15-1_amd64.deb ... 388s Unpacking libxcb-shm0:amd64 (1.15-1) ... 388s Selecting previously unselected package libxrender1:amd64. 388s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 388s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 388s Selecting previously unselected package libcairo2:amd64. 388s Preparing to unpack .../064-libcairo2_1.18.0-1_amd64.deb ... 388s Unpacking libcairo2:amd64 (1.18.0-1) ... 388s Selecting previously unselected package libdatrie1:amd64. 388s Preparing to unpack .../065-libdatrie1_0.2.13-3_amd64.deb ... 388s Unpacking libdatrie1:amd64 (0.2.13-3) ... 388s Selecting previously unselected package libdeflate0:amd64. 388s Preparing to unpack .../066-libdeflate0_1.19-1_amd64.deb ... 388s Unpacking libdeflate0:amd64 (1.19-1) ... 388s Selecting previously unselected package libgraphite2-3:amd64. 388s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_amd64.deb ... 388s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 388s Selecting previously unselected package libharfbuzz0b:amd64. 388s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_amd64.deb ... 388s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 388s Selecting previously unselected package x11-common. 388s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 388s Unpacking x11-common (1:7.7+23ubuntu2) ... 388s Selecting previously unselected package libice6:amd64. 388s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_amd64.deb ... 388s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 388s Selecting previously unselected package libicu-dev:amd64. 388s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_amd64.deb ... 388s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 388s Selecting previously unselected package libjpeg-turbo8:amd64. 388s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 388s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 388s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 388s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 388s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 388s Selecting previously unselected package libjpeg8:amd64. 388s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_amd64.deb ... 388s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 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previously unselected package libpangoft2-1.0-0:amd64. 389s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 389s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 390s Selecting previously unselected package libpangocairo-1.0-0:amd64. 390s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 390s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 390s Selecting previously unselected package libpaper1:amd64. 390s Preparing to unpack .../103-libpaper1_1.1.29_amd64.deb ... 390s Unpacking libpaper1:amd64 (1.1.29) ... 390s Selecting previously unselected package libpaper-utils. 390s Preparing to unpack .../104-libpaper-utils_1.1.29_amd64.deb ... 390s Unpacking libpaper-utils (1.1.29) ... 390s Selecting previously unselected package libpcre2-16-0:amd64. 390s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 390s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 390s Selecting previously unselected package libpcre2-32-0:amd64. 390s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 390s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 390s Selecting previously unselected package libpcre2-posix3:amd64. 390s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 390s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 390s Selecting previously unselected package libpcre2-dev:amd64. 390s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 390s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 390s Selecting previously unselected package libpkgconf3:amd64. 390s Preparing to unpack .../109-libpkgconf3_1.8.1-2_amd64.deb ... 390s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 390s Selecting previously unselected package zlib1g-dev:amd64. 390s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 390s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 390s Selecting previously unselected package libpng-dev:amd64. 390s Preparing to unpack .../111-libpng-dev_1.6.43-1_amd64.deb ... 390s Unpacking libpng-dev:amd64 (1.6.43-1) ... 390s Selecting previously unselected package libpotrace0:amd64. 390s Preparing to unpack .../112-libpotrace0_1.16-2_amd64.deb ... 390s Unpacking libpotrace0:amd64 (1.16-2) ... 390s Selecting previously unselected package libptexenc1:amd64. 390s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_amd64.deb ... 390s Unpacking libptexenc1:amd64 (2023.20230311.66589-9) ... 390s Selecting previously unselected package libreadline-dev:amd64. 390s Preparing to unpack .../114-libreadline-dev_8.2-3_amd64.deb ... 390s Unpacking libreadline-dev:amd64 (8.2-3) ... 390s Selecting previously unselected package libsharpyuv0:amd64. 390s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_amd64.deb ... 390s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 390s Selecting previously unselected package libsm6:amd64. 390s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_amd64.deb ... 390s 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(2.1-6.1ubuntu1) ... 390s Selecting previously unselected package libwebp7:amd64. 390s Preparing to unpack .../122-libwebp7_1.3.2-0.4_amd64.deb ... 390s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 390s Selecting previously unselected package libtiff6:amd64. 390s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 390s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 390s Selecting previously unselected package libxft2:amd64. 390s Preparing to unpack .../124-libxft2_2.3.6-1_amd64.deb ... 390s Unpacking libxft2:amd64 (2.3.6-1) ... 390s Selecting previously unselected package libxss1:amd64. 390s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_amd64.deb ... 390s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 390s Selecting previously unselected package libtk8.6:amd64. 390s Preparing to unpack .../126-libtk8.6_8.6.13-2_amd64.deb ... 390s Unpacking libtk8.6:amd64 (8.6.13-2) ... 390s Selecting previously unselected package libxt6:amd64. 390s Preparing to unpack .../127-libxt6_1%3a1.2.1-1.1_amd64.deb ... 390s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 390s Selecting previously unselected package libxmu6:amd64. 390s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_amd64.deb ... 390s Unpacking libxmu6:amd64 (2:1.1.3-3) ... 390s Selecting previously unselected package libxpm4:amd64. 390s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_amd64.deb ... 390s Unpacking libxpm4:amd64 (1:3.5.17-1) ... 390s Selecting previously unselected package libxaw7:amd64. 390s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_amd64.deb ... 390s Unpacking libxaw7:amd64 (2:1.0.14-1) ... 391s Selecting previously unselected package libxi6:amd64. 391s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_amd64.deb ... 391s Unpacking libxi6:amd64 (2:1.8.1-1) ... 391s Selecting previously unselected package libzzip-0-13:amd64. 391s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... 391s Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 391s Selecting previously unselected package zip. 391s Preparing to unpack .../133-zip_3.0-13_amd64.deb ... 391s Unpacking zip (3.0-13) ... 391s Selecting previously unselected package unzip. 391s Preparing to unpack .../134-unzip_6.0-28ubuntu3_amd64.deb ... 391s Unpacking unzip (6.0-28ubuntu3) ... 391s Selecting previously unselected package xdg-utils. 391s Preparing to unpack .../135-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 391s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 391s Selecting previously unselected package r-base-core. 391s Preparing to unpack .../136-r-base-core_4.3.2-1build1_amd64.deb ... 391s Unpacking r-base-core (4.3.2-1build1) ... 391s Selecting previously unselected package r-cran-littler. 391s Preparing to unpack .../137-r-cran-littler_0.3.19-1_amd64.deb ... 391s Unpacking r-cran-littler (0.3.19-1) ... 391s Selecting previously unselected package littler. 391s Preparing to unpack .../138-littler_0.3.19-1_all.deb ... 391s Unpacking littler (0.3.19-1) ... 391s Selecting previously unselected package node-bootstrap-sass. 391s Preparing to unpack .../139-node-bootstrap-sass_3.4.3-2_all.deb ... 391s Unpacking node-bootstrap-sass (3.4.3-2) ... 391s Selecting previously unselected package node-html5shiv. 391s Preparing to unpack .../140-node-html5shiv_3.7.3+dfsg-5_all.deb ... 391s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 391s Selecting previously unselected package node-normalize.css. 391s Preparing to unpack .../141-node-normalize.css_8.0.1-5_all.deb ... 391s Unpacking node-normalize.css (8.0.1-5) ... 391s Selecting previously unselected package pandoc-data. 391s Preparing to unpack .../142-pandoc-data_3.1.3-1_all.deb ... 391s Unpacking pandoc-data (3.1.3-1) ... 391s Selecting previously unselected package pandoc. 391s Preparing to unpack .../143-pandoc_3.1.3+ds-2_amd64.deb ... 391s Unpacking pandoc (3.1.3+ds-2) ... 392s Selecting previously unselected package pkgconf-bin. 392s Preparing to unpack .../144-pkgconf-bin_1.8.1-2_amd64.deb ... 392s Unpacking pkgconf-bin (1.8.1-2) ... 392s Selecting previously unselected package pkgconf:amd64. 392s Preparing to unpack .../145-pkgconf_1.8.1-2_amd64.deb ... 392s Unpacking pkgconf:amd64 (1.8.1-2) ... 392s Selecting previously unselected package pkg-config:amd64. 392s Preparing to unpack .../146-pkg-config_1.8.1-2_amd64.deb ... 392s Unpacking pkg-config:amd64 (1.8.1-2) ... 392s Selecting previously unselected package liblzma-dev:amd64. 392s Preparing to unpack .../147-liblzma-dev_5.4.5-0.3_amd64.deb ... 392s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 392s Selecting previously unselected package r-base-dev. 392s Preparing to unpack .../148-r-base-dev_4.3.2-1build1_all.deb ... 392s Unpacking r-base-dev (4.3.2-1build1) ... 392s Selecting previously unselected package pkg-r-autopkgtest. 392s Preparing to unpack .../149-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 392s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 393s Selecting previously unselected package r-bioc-biocgenerics. 393s Preparing to unpack .../150-r-bioc-biocgenerics_0.48.1-2_all.deb ... 393s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 393s Selecting previously unselected package r-bioc-biobase. 393s Preparing to unpack .../151-r-bioc-biobase_2.62.0-1_amd64.deb ... 393s Unpacking r-bioc-biobase (2.62.0-1) ... 393s Selecting previously unselected package r-bioc-s4vectors. 393s Preparing to unpack .../152-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 393s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 393s Selecting previously unselected package r-bioc-iranges. 393s Preparing to unpack .../153-r-bioc-iranges_2.36.0-1_amd64.deb ... 393s Unpacking r-bioc-iranges (2.36.0-1) ... 393s Selecting previously unselected package r-cran-dbi. 393s Preparing to unpack .../154-r-cran-dbi_1.2.2-1_all.deb ... 393s Unpacking r-cran-dbi (1.2.2-1) ... 393s Selecting previously unselected package r-cran-bit. 393s Preparing to unpack .../155-r-cran-bit_4.0.5-1_amd64.deb ... 393s Unpacking r-cran-bit (4.0.5-1) ... 393s Selecting previously unselected package r-cran-bit64. 393s Preparing to unpack .../156-r-cran-bit64_4.0.5-1_amd64.deb ... 393s Unpacking r-cran-bit64 (4.0.5-1) ... 393s Selecting previously unselected package r-cran-rlang. 393s Preparing to unpack .../157-r-cran-rlang_1.1.3-1_amd64.deb ... 393s Unpacking r-cran-rlang (1.1.3-1) ... 393s Selecting previously unselected package r-cran-cli. 393s Preparing to unpack .../158-r-cran-cli_3.6.2-1_amd64.deb ... 393s Unpacking r-cran-cli (3.6.2-1) ... 393s Selecting previously unselected package r-cran-glue. 393s Preparing to unpack .../159-r-cran-glue_1.7.0-1_amd64.deb ... 393s Unpacking r-cran-glue (1.7.0-1) ... 393s Selecting previously unselected package r-cran-lifecycle. 393s Preparing to unpack .../160-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 393s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 393s Selecting previously unselected package r-cran-vctrs. 393s Preparing to unpack .../161-r-cran-vctrs_0.6.5-1_amd64.deb ... 393s Unpacking r-cran-vctrs (0.6.5-1) ... 393s Selecting previously unselected package r-cran-blob. 393s Preparing to unpack .../162-r-cran-blob_1.2.4-1_all.deb ... 393s Unpacking r-cran-blob (1.2.4-1) ... 393s Selecting previously unselected package r-cran-fastmap. 393s Preparing to unpack .../163-r-cran-fastmap_1.1.1-1_amd64.deb ... 393s Unpacking r-cran-fastmap (1.1.1-1) ... 393s Selecting previously unselected package r-cran-cachem. 393s Preparing to unpack .../164-r-cran-cachem_1.0.8-1_amd64.deb ... 393s Unpacking r-cran-cachem (1.0.8-1) ... 393s Selecting previously unselected package r-cran-memoise. 393s Preparing to unpack .../165-r-cran-memoise_2.0.1-1_all.deb ... 393s Unpacking r-cran-memoise (2.0.1-1) ... 393s Selecting previously unselected package r-cran-pkgconfig. 393s Preparing to unpack .../166-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 393s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 393s Selecting previously unselected package r-cran-plogr. 393s Preparing to unpack .../167-r-cran-plogr_0.2.0-3build1_all.deb ... 393s Unpacking r-cran-plogr (0.2.0-3build1) ... 393s Selecting previously unselected package r-cran-cpp11. 393s Preparing to unpack .../168-r-cran-cpp11_0.4.7-1_all.deb ... 393s Unpacking r-cran-cpp11 (0.4.7-1) ... 393s Selecting previously unselected package r-cran-rsqlite. 393s Preparing to unpack .../169-r-cran-rsqlite_2.3.4-1_amd64.deb ... 393s Unpacking r-cran-rsqlite (2.3.4-1) ... 393s Selecting previously unselected package r-cran-curl. 393s Preparing to unpack .../170-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 393s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 393s Selecting previously unselected package r-cran-jsonlite. 393s Preparing to unpack .../171-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 393s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 394s Selecting previously unselected package r-cran-mime. 394s Preparing to unpack .../172-r-cran-mime_0.12-1_amd64.deb ... 394s Unpacking r-cran-mime (0.12-1) ... 394s Selecting previously unselected package r-cran-sys. 394s Preparing to unpack .../173-r-cran-sys_3.4.2-1_amd64.deb ... 394s Unpacking r-cran-sys (3.4.2-1) ... 394s Selecting previously unselected package r-cran-askpass. 394s Preparing to unpack .../174-r-cran-askpass_1.2.0-1_amd64.deb ... 394s Unpacking r-cran-askpass (1.2.0-1) ... 394s Selecting previously unselected package r-cran-openssl. 394s Preparing to unpack .../175-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 394s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 394s Selecting previously unselected package r-cran-r6. 394s Preparing to unpack .../176-r-cran-r6_2.5.1-1_all.deb ... 394s Unpacking r-cran-r6 (2.5.1-1) ... 394s Selecting previously unselected package r-cran-httr. 394s Preparing to unpack .../177-r-cran-httr_1.4.7+dfsg-1_all.deb ... 394s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 394s Selecting previously unselected package r-cran-png. 394s Preparing to unpack .../178-r-cran-png_0.1-8-1_amd64.deb ... 394s Unpacking r-cran-png (0.1-8-1) ... 394s Selecting previously unselected package r-bioc-zlibbioc. 394s Preparing to unpack .../179-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 394s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 394s Selecting previously unselected package r-bioc-xvector. 394s Preparing to unpack .../180-r-bioc-xvector_0.42.0-1_amd64.deb ... 394s Unpacking r-bioc-xvector (0.42.0-1) ... 394s Selecting previously unselected package r-cran-bitops. 394s Preparing to unpack .../181-r-cran-bitops_1.0-7-1_amd64.deb ... 394s Unpacking r-cran-bitops (1.0-7-1) ... 394s Selecting previously unselected package r-cran-rcurl. 394s Preparing to unpack .../182-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 394s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 394s Selecting previously unselected package r-bioc-genomeinfodbdata. 394s Preparing to unpack .../183-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 394s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 394s Selecting previously unselected package r-bioc-genomeinfodb. 394s Preparing to unpack .../184-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 394s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 394s Selecting previously unselected package r-cran-crayon. 394s Preparing to unpack .../185-r-cran-crayon_1.5.2-1_all.deb ... 394s Unpacking r-cran-crayon (1.5.2-1) ... 394s Selecting previously unselected package r-bioc-biostrings. 394s Preparing to unpack .../186-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 394s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 394s Selecting previously unselected package r-bioc-keggrest. 394s Preparing to unpack .../187-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 394s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 394s Selecting previously unselected package r-bioc-annotationdbi. 394s Preparing to unpack .../188-r-bioc-annotationdbi_1.64.1-1_all.deb ... 394s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 394s Selecting previously unselected package r-bioc-genomicranges. 394s Preparing to unpack .../189-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 394s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 394s Selecting previously unselected package r-cran-lazyeval. 394s Preparing to unpack .../190-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 394s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 394s Selecting previously unselected package r-bioc-annotationfilter. 394s Preparing to unpack .../191-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 394s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 395s Selecting previously unselected package r-cran-generics. 395s Preparing to unpack .../192-r-cran-generics_0.1.3-1_all.deb ... 395s Unpacking r-cran-generics (0.1.3-1) ... 395s Selecting previously unselected package r-cran-magrittr. 395s Preparing to unpack .../193-r-cran-magrittr_2.0.3-1_amd64.deb ... 395s Unpacking r-cran-magrittr (2.0.3-1) ... 395s Selecting previously unselected package r-cran-fansi. 395s Preparing to unpack .../194-r-cran-fansi_1.0.5-1_amd64.deb ... 395s Unpacking r-cran-fansi (1.0.5-1) ... 395s Selecting previously unselected package r-cran-utf8. 395s Preparing to unpack .../195-r-cran-utf8_1.2.4-1_amd64.deb ... 395s Unpacking r-cran-utf8 (1.2.4-1) ... 395s Selecting previously unselected package r-cran-pillar. 395s Preparing to unpack .../196-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 395s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 395s Selecting previously unselected package r-cran-tibble. 395s Preparing to unpack .../197-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 395s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 395s Selecting previously unselected package r-cran-withr. 395s Preparing to unpack .../198-r-cran-withr_2.5.0-1_all.deb ... 395s Unpacking r-cran-withr (2.5.0-1) ... 395s Selecting previously unselected package r-cran-tidyselect. 395s Preparing to unpack .../199-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 395s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 395s Selecting previously unselected package r-cran-dplyr. 395s Preparing to unpack .../200-r-cran-dplyr_1.1.4-1_amd64.deb ... 395s Unpacking r-cran-dplyr (1.1.4-1) ... 395s Selecting previously unselected package r-cran-purrr. 395s Preparing to unpack .../201-r-cran-purrr_1.0.2-1_amd64.deb ... 395s Unpacking r-cran-purrr (1.0.2-1) ... 395s Selecting previously unselected package r-cran-stringi. 395s Preparing to unpack .../202-r-cran-stringi_1.8.3-1_amd64.deb ... 395s Unpacking r-cran-stringi (1.8.3-1) ... 395s Selecting previously unselected package r-cran-stringr. 395s Preparing to unpack .../203-r-cran-stringr_1.5.1-1_all.deb ... 395s Unpacking r-cran-stringr (1.5.1-1) ... 395s Selecting previously unselected package r-cran-tidyr. 395s Preparing to unpack .../204-r-cran-tidyr_1.3.1-1_amd64.deb ... 395s Unpacking r-cran-tidyr (1.3.1-1) ... 395s Selecting previously unselected package r-cran-dbplyr. 395s Preparing to unpack .../205-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 395s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 395s Selecting previously unselected package r-cran-filelock. 395s Preparing to unpack .../206-r-cran-filelock_1.0.3-1_amd64.deb ... 395s Unpacking r-cran-filelock (1.0.3-1) ... 395s Selecting previously unselected package r-bioc-biocfilecache. 395s Preparing to unpack .../207-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 395s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 395s Selecting previously unselected package r-bioc-biocio. 395s Preparing to unpack .../208-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 395s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 395s Selecting previously unselected package r-cran-formatr. 395s Preparing to unpack .../209-r-cran-formatr_1.14-1_all.deb ... 395s Unpacking r-cran-formatr (1.14-1) ... 395s Selecting previously unselected package r-cran-lambda.r. 395s Preparing to unpack .../210-r-cran-lambda.r_1.2.4-2build1_all.deb ... 395s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 395s Selecting previously unselected package r-cran-futile.options. 395s Preparing to unpack .../211-r-cran-futile.options_1.0.1-3build1_all.deb ... 395s Unpacking r-cran-futile.options (1.0.1-3build1) ... 395s Selecting previously unselected package r-cran-futile.logger. 395s Preparing to unpack .../212-r-cran-futile.logger_1.4.3-4build1_all.deb ... 395s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 395s Selecting previously unselected package r-cran-snow. 395s Preparing to unpack .../213-r-cran-snow_1%3a0.4.4-2_all.deb ... 395s Unpacking r-cran-snow (1:0.4.4-2) ... 395s Selecting previously unselected package r-cran-codetools. 395s Preparing to unpack .../214-r-cran-codetools_0.2-19-1_all.deb ... 395s Unpacking r-cran-codetools (0.2-19-1) ... 395s Selecting previously unselected package r-cran-bh. 396s Preparing to unpack .../215-r-cran-bh_1.84.0-1_all.deb ... 396s Unpacking r-cran-bh (1.84.0-1) ... 396s Selecting previously unselected package r-bioc-biocparallel. 396s Preparing to unpack .../216-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 396s Unpacking r-bioc-biocparallel (1.36.0-1) ... 396s Selecting previously unselected package r-cran-base64enc. 396s Preparing to unpack .../217-r-cran-base64enc_0.1-3-3_amd64.deb ... 396s Unpacking r-cran-base64enc (0.1-3-3) ... 396s Selecting previously unselected package r-cran-digest. 396s Preparing to unpack .../218-r-cran-digest_0.6.34-1_amd64.deb ... 396s Unpacking r-cran-digest (0.6.34-1) ... 396s Selecting previously unselected package r-cran-ellipsis. 396s Preparing to unpack .../219-r-cran-ellipsis_0.3.2-2_amd64.deb ... 396s Unpacking r-cran-ellipsis (0.3.2-2) ... 396s Selecting previously unselected package r-cran-htmltools. 396s Preparing to unpack .../220-r-cran-htmltools_0.5.7-1_amd64.deb ... 396s Unpacking r-cran-htmltools (0.5.7-1) ... 396s Selecting previously unselected package r-cran-evaluate. 396s Preparing to unpack .../221-r-cran-evaluate_0.23-1_all.deb ... 396s Unpacking r-cran-evaluate (0.23-1) ... 396s Selecting previously unselected package r-cran-xfun. 396s Preparing to unpack .../222-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 396s Unpacking r-cran-xfun (0.41+dfsg-1) ... 396s Selecting previously unselected package r-cran-highr. 396s Preparing to unpack .../223-r-cran-highr_0.10+dfsg-1_all.deb ... 396s Unpacking r-cran-highr (0.10+dfsg-1) ... 396s Selecting previously unselected package r-cran-yaml. 396s Preparing to unpack .../224-r-cran-yaml_2.3.8-1_amd64.deb ... 396s Unpacking r-cran-yaml (2.3.8-1) ... 396s Selecting previously unselected package libjs-mathjax. 396s Preparing to unpack .../225-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 396s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 397s Selecting previously unselected package r-cran-knitr. 397s Preparing to unpack .../226-r-cran-knitr_1.45+dfsg-1_all.deb ... 397s Unpacking r-cran-knitr (1.45+dfsg-1) ... 397s Selecting previously unselected package r-cran-jquerylib. 397s Preparing to unpack .../227-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 397s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 397s Selecting previously unselected package r-cran-fs. 397s Preparing to unpack .../228-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 397s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 397s Selecting previously unselected package r-cran-rappdirs. 397s Preparing to unpack .../229-r-cran-rappdirs_0.3.3-1_amd64.deb ... 397s Unpacking r-cran-rappdirs (0.3.3-1) ... 397s Selecting previously unselected package r-cran-sass. 397s Preparing to unpack .../230-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 397s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 397s Selecting previously unselected package r-cran-bslib. 397s Preparing to unpack .../231-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 397s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 397s Selecting previously unselected package r-cran-fontawesome. 397s Preparing to unpack .../232-r-cran-fontawesome_0.5.2-1_all.deb ... 397s Unpacking r-cran-fontawesome (0.5.2-1) ... 397s Selecting previously unselected package r-cran-tinytex. 397s Preparing to unpack .../233-r-cran-tinytex_0.49-1_all.deb ... 397s Unpacking r-cran-tinytex (0.49-1) ... 397s Selecting previously unselected package libjs-modernizr. 397s Preparing to unpack .../234-libjs-modernizr_2.6.2+ds1-5_all.deb ... 397s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 397s Selecting previously unselected package r-cran-pkgkitten. 397s Preparing to unpack .../235-r-cran-pkgkitten_0.2.3-1_all.deb ... 397s Unpacking r-cran-pkgkitten (0.2.3-1) ... 397s Selecting previously unselected package r-cran-rcpp. 397s Preparing to unpack .../236-r-cran-rcpp_1.0.12-1_amd64.deb ... 397s Unpacking r-cran-rcpp (1.0.12-1) ... 397s Selecting previously unselected package r-cran-later. 397s Preparing to unpack .../237-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 397s Unpacking r-cran-later (1.3.2+dfsg-1) ... 397s Selecting previously unselected package r-cran-promises. 397s Preparing to unpack .../238-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 397s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 397s Selecting previously unselected package r-cran-httpuv. 397s Preparing to unpack .../239-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 397s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 397s Selecting previously unselected package r-cran-xtable. 397s Preparing to unpack .../240-r-cran-xtable_1%3a1.8-4-2_all.deb ... 397s Unpacking r-cran-xtable (1:1.8-4-2) ... 397s Selecting previously unselected package r-cran-sourcetools. 397s Preparing to unpack .../241-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 397s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 398s Selecting previously unselected package r-cran-commonmark. 398s Preparing to unpack .../242-r-cran-commonmark_1.9.1-1_amd64.deb ... 398s Unpacking r-cran-commonmark (1.9.1-1) ... 398s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 398s Preparing to unpack .../243-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 398s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 398s Selecting previously unselected package r-cran-shiny. 398s Preparing to unpack .../244-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 398s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 398s Selecting previously unselected package r-cran-rmarkdown. 398s Preparing to unpack .../245-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 398s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 398s Selecting previously unselected package r-cran-bookdown. 398s Preparing to unpack .../246-r-cran-bookdown_0.37+dfsg-1_all.deb ... 398s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 398s Selecting previously unselected package r-cran-biocmanager. 398s Preparing to unpack .../247-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 398s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 398s Selecting previously unselected package tex-common. 398s Preparing to unpack .../248-tex-common_6.18_all.deb ... 398s Unpacking tex-common (6.18) ... 398s Selecting previously unselected package t1utils. 398s Preparing to unpack .../249-t1utils_1.41-4build2_amd64.deb ... 398s Unpacking t1utils (1.41-4build2) ... 398s Selecting previously unselected package texlive-binaries. 398s Preparing to unpack .../250-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 398s Unpacking texlive-binaries (2023.20230311.66589-9) ... 398s Selecting previously unselected package texlive-base. 398s Preparing to unpack .../251-texlive-base_2023.20240207-1_all.deb ... 398s Unpacking texlive-base (2023.20240207-1) ... 400s Selecting previously unselected package texlive-latex-base. 400s Preparing to unpack .../252-texlive-latex-base_2023.20240207-1_all.deb ... 400s Unpacking texlive-latex-base (2023.20240207-1) ... 400s Selecting previously unselected package texlive-bibtex-extra. 400s Preparing to unpack .../253-texlive-bibtex-extra_2023.20240207-1_all.deb ... 400s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 403s Selecting previously unselected package r-bioc-biocstyle. 403s Preparing to unpack .../254-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 403s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 403s Selecting previously unselected package r-cran-xml. 403s Preparing to unpack .../255-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 403s Unpacking r-cran-xml (3.99-0.16.1-1) ... 403s Selecting previously unselected package r-cran-hms. 403s Preparing to unpack .../256-r-cran-hms_1.1.3-1_all.deb ... 403s Unpacking r-cran-hms (1.1.3-1) ... 403s Selecting previously unselected package r-cran-prettyunits. 403s Preparing to unpack .../257-r-cran-prettyunits_1.2.0-1_all.deb ... 403s Unpacking r-cran-prettyunits (1.2.0-1) ... 403s Selecting previously unselected package r-cran-progress. 403s Preparing to unpack .../258-r-cran-progress_1.2.3-1_all.deb ... 403s Unpacking r-cran-progress (1.2.3-1) ... 403s Selecting previously unselected package r-cran-xml2. 404s Preparing to unpack .../259-r-cran-xml2_1.3.6-1_amd64.deb ... 404s Unpacking r-cran-xml2 (1.3.6-1) ... 404s Selecting previously unselected package r-bioc-biomart. 404s Preparing to unpack .../260-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 404s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 404s Selecting previously unselected package r-cran-farver. 404s Preparing to unpack .../261-r-cran-farver_2.1.1-1_amd64.deb ... 404s Unpacking r-cran-farver (2.1.1-1) ... 404s Selecting previously unselected package r-cran-labeling. 404s Preparing to unpack .../262-r-cran-labeling_0.4.3-1_all.deb ... 404s Unpacking r-cran-labeling (0.4.3-1) ... 404s Selecting previously unselected package r-cran-colorspace. 404s Preparing to unpack .../263-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 404s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 404s Selecting previously unselected package r-cran-munsell. 404s Preparing to unpack .../264-r-cran-munsell_0.5.0-2build1_all.deb ... 404s Unpacking r-cran-munsell (0.5.0-2build1) ... 404s Selecting previously unselected package r-cran-rcolorbrewer. 404s Preparing to unpack .../265-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 404s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 404s Selecting previously unselected package r-cran-viridislite. 404s Preparing to unpack .../266-r-cran-viridislite_0.4.2-2_all.deb ... 404s Unpacking r-cran-viridislite (0.4.2-2) ... 404s Selecting previously unselected package r-cran-scales. 404s Preparing to unpack .../267-r-cran-scales_1.3.0-1_all.deb ... 404s Unpacking r-cran-scales (1.3.0-1) ... 404s Selecting previously unselected package r-cran-gtable. 404s Preparing to unpack .../268-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 404s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 404s Selecting previously unselected package r-cran-isoband. 404s Preparing to unpack .../269-r-cran-isoband_0.2.7-1_amd64.deb ... 404s Unpacking r-cran-isoband (0.2.7-1) ... 404s Selecting previously unselected package r-cran-mass. 404s Preparing to unpack .../270-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 404s Unpacking r-cran-mass (7.3-60.0.1-1) ... 404s Selecting previously unselected package r-cran-lattice. 404s Preparing to unpack .../271-r-cran-lattice_0.22-5-1_amd64.deb ... 404s Unpacking r-cran-lattice (0.22-5-1) ... 404s Selecting previously unselected package r-cran-nlme. 404s Preparing to unpack .../272-r-cran-nlme_3.1.164-1_amd64.deb ... 404s Unpacking r-cran-nlme (3.1.164-1) ... 404s Selecting previously unselected package r-cran-matrix. 404s Preparing to unpack .../273-r-cran-matrix_1.6-5-1_amd64.deb ... 404s Unpacking r-cran-matrix (1.6-5-1) ... 404s Selecting previously unselected package r-cran-mgcv. 404s Preparing to unpack .../274-r-cran-mgcv_1.9-1-1_amd64.deb ... 404s Unpacking r-cran-mgcv (1.9-1-1) ... 404s Selecting previously unselected package r-cran-ggplot2. 404s Preparing to unpack .../275-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 404s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 405s Selecting previously unselected package r-cran-cluster. 405s Preparing to unpack .../276-r-cran-cluster_2.1.6-1_amd64.deb ... 405s Unpacking r-cran-cluster (2.1.6-1) ... 405s Selecting previously unselected package r-cran-survival. 405s Preparing to unpack .../277-r-cran-survival_3.5-8-1_amd64.deb ... 405s Unpacking r-cran-survival (3.5-8-1) ... 405s Selecting previously unselected package r-cran-rpart. 405s Preparing to unpack .../278-r-cran-rpart_4.1.23-1_amd64.deb ... 405s Unpacking r-cran-rpart (4.1.23-1) ... 405s Selecting previously unselected package r-cran-nnet. 405s Preparing to unpack .../279-r-cran-nnet_7.3-19-2_amd64.deb ... 405s Unpacking r-cran-nnet (7.3-19-2) ... 405s Selecting previously unselected package r-cran-foreign. 405s Preparing to unpack .../280-r-cran-foreign_0.8.86-1_amd64.deb ... 405s Unpacking r-cran-foreign (0.8.86-1) ... 405s Selecting previously unselected package r-cran-gridextra. 405s Preparing to unpack .../281-r-cran-gridextra_2.3-3build1_all.deb ... 405s Unpacking r-cran-gridextra (2.3-3build1) ... 405s Selecting previously unselected package r-cran-data.table. 405s Preparing to unpack .../282-r-cran-data.table_1.14.10+dfsg-1_amd64.deb ... 405s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 405s Selecting previously unselected package r-cran-backports. 405s Preparing to unpack .../283-r-cran-backports_1.4.1-1_amd64.deb ... 405s Unpacking r-cran-backports (1.4.1-1) ... 405s Selecting previously unselected package r-cran-checkmate. 405s Preparing to unpack .../284-r-cran-checkmate_2.3.1-1_amd64.deb ... 405s Unpacking r-cran-checkmate (2.3.1-1) ... 405s Selecting previously unselected package r-cran-htmlwidgets. 405s Preparing to unpack .../285-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 405s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 405s Selecting previously unselected package r-cran-rstudioapi. 405s Preparing to unpack .../286-r-cran-rstudioapi_0.15.0-1_all.deb ... 405s Unpacking r-cran-rstudioapi (0.15.0-1) ... 405s Selecting previously unselected package r-cran-htmltable. 405s Preparing to unpack .../287-r-cran-htmltable_2.4.2-1_all.deb ... 405s Unpacking r-cran-htmltable (2.4.2-1) ... 405s Selecting previously unselected package r-cran-viridis. 405s Preparing to unpack .../288-r-cran-viridis_0.6.5-1_all.deb ... 405s Unpacking r-cran-viridis (0.6.5-1) ... 405s Selecting previously unselected package r-cran-formula. 405s Preparing to unpack .../289-r-cran-formula_1.2-5-1_all.deb ... 405s Unpacking r-cran-formula (1.2-5-1) ... 405s Selecting previously unselected package r-cran-chron. 405s Preparing to unpack .../290-r-cran-chron_2.3-61-2_amd64.deb ... 405s Unpacking r-cran-chron (2.3-61-2) ... 405s Selecting previously unselected package r-cran-jpeg. 405s Preparing to unpack .../291-r-cran-jpeg_0.1-10-1_amd64.deb ... 405s Unpacking r-cran-jpeg (0.1-10-1) ... 405s Selecting previously unselected package r-cran-deldir. 405s Preparing to unpack .../292-r-cran-deldir_2.0-4-1_amd64.deb ... 405s Unpacking r-cran-deldir (2.0-4-1) ... 405s Selecting previously unselected package r-cran-rcppeigen. 405s Preparing to unpack .../293-r-cran-rcppeigen_0.3.3.9.4-1_amd64.deb ... 405s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 405s Selecting previously unselected package r-cran-interp. 405s Preparing to unpack .../294-r-cran-interp_1.1-6-1_amd64.deb ... 405s Unpacking r-cran-interp (1.1-6-1) ... 406s Selecting previously unselected package r-cran-latticeextra. 406s Preparing to unpack .../295-r-cran-latticeextra_0.6-30-1_all.deb ... 406s Unpacking r-cran-latticeextra (0.6-30-1) ... 406s Selecting previously unselected package r-cran-acepack. 406s Preparing to unpack .../296-r-cran-acepack_1.4.2-1_amd64.deb ... 406s Unpacking r-cran-acepack (1.4.2-1) ... 406s Selecting previously unselected package r-cran-hmisc. 406s Preparing to unpack .../297-r-cran-hmisc_5.1-1-1_amd64.deb ... 406s Unpacking r-cran-hmisc (5.1-1-1) ... 406s Selecting previously unselected package r-cran-dichromat. 406s Preparing to unpack .../298-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 406s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 406s Selecting previously unselected package r-cran-matrixstats. 406s Preparing to unpack .../299-r-cran-matrixstats_1.2.0-1_amd64.deb ... 406s Unpacking r-cran-matrixstats (1.2.0-1) ... 406s Selecting previously unselected package r-bioc-matrixgenerics. 406s Preparing to unpack .../300-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 406s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 406s Selecting previously unselected package r-cran-abind. 406s Preparing to unpack .../301-r-cran-abind_1.4-5-2_all.deb ... 406s Unpacking r-cran-abind (1.4-5-2) ... 406s Selecting previously unselected package r-bioc-s4arrays. 406s Preparing to unpack .../302-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 406s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 406s Selecting previously unselected package r-bioc-sparsearray. 406s Preparing to unpack .../303-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 406s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 406s Selecting previously unselected package r-bioc-delayedarray. 406s Preparing to unpack .../304-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 406s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 406s Selecting previously unselected package r-bioc-summarizedexperiment. 406s Preparing to unpack .../305-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 406s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 406s Selecting previously unselected package r-bioc-rhtslib. 406s Preparing to unpack .../306-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 406s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 406s Selecting previously unselected package r-bioc-rsamtools. 406s Preparing to unpack .../307-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 406s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 406s Selecting previously unselected package r-bioc-genomicalignments. 406s Preparing to unpack .../308-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 406s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 406s Selecting previously unselected package r-cran-rjson. 406s Preparing to unpack .../309-r-cran-rjson_0.2.21-1_amd64.deb ... 406s Unpacking r-cran-rjson (0.2.21-1) ... 406s Selecting previously unselected package r-cran-restfulr. 406s Preparing to unpack .../310-r-cran-restfulr_0.0.15-1_amd64.deb ... 406s Unpacking r-cran-restfulr (0.0.15-1) ... 406s Selecting previously unselected package r-bioc-rtracklayer. 406s Preparing to unpack .../311-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 406s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 406s Selecting previously unselected package r-bioc-genomicfeatures. 406s Preparing to unpack .../312-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 406s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 406s Selecting previously unselected package r-bioc-bsgenome. 407s Preparing to unpack .../313-r-bioc-bsgenome_1.70.2-1_all.deb ... 407s Unpacking r-bioc-bsgenome (1.70.2-1) ... 407s Selecting previously unselected package r-bioc-variantannotation. 407s Preparing to unpack .../314-r-bioc-variantannotation_1.48.1-1_amd64.deb ... 407s Unpacking r-bioc-variantannotation (1.48.1-1) ... 407s Selecting previously unselected package r-bioc-protgenerics. 407s Preparing to unpack .../315-r-bioc-protgenerics_1.34.0-1_all.deb ... 407s Unpacking r-bioc-protgenerics (1.34.0-1) ... 407s Selecting previously unselected package r-bioc-ensembldb. 407s Preparing to unpack .../316-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 407s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 407s Selecting previously unselected package r-bioc-biovizbase. 407s Preparing to unpack .../317-r-bioc-biovizbase_1.50.0-1_amd64.deb ... 407s Unpacking r-bioc-biovizbase (1.50.0-1) ... 407s Selecting previously unselected package r-cran-plyr. 407s Preparing to unpack .../318-r-cran-plyr_1.8.9-1_amd64.deb ... 407s Unpacking r-cran-plyr (1.8.9-1) ... 407s Selecting previously unselected package r-cran-reshape2. 407s Preparing to unpack .../319-r-cran-reshape2_1.4.4-2build1_amd64.deb ... 407s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 407s Selecting previously unselected package r-bioc-graph. 407s Preparing to unpack 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previously unselected package r-cran-tzdb. 407s Preparing to unpack .../326-r-cran-tzdb_0.4.0-2_amd64.deb ... 407s Unpacking r-cran-tzdb (0.4.0-2) ... 407s Selecting previously unselected package r-cran-vroom. 407s Preparing to unpack .../327-r-cran-vroom_1.6.5-1_amd64.deb ... 407s Unpacking r-cran-vroom (1.6.5-1) ... 407s Selecting previously unselected package r-cran-readr. 407s Preparing to unpack .../328-r-cran-readr_2.1.5-1_amd64.deb ... 407s Unpacking r-cran-readr (2.1.5-1) ... 407s Selecting previously unselected package r-cran-haven. 407s Preparing to unpack .../329-r-cran-haven_2.5.4-1_amd64.deb ... 407s Unpacking r-cran-haven (2.5.4-1) ... 407s Selecting previously unselected package r-cran-labelled. 407s Preparing to unpack .../330-r-cran-labelled_2.12.0-2_all.deb ... 407s Unpacking r-cran-labelled (2.12.0-2) ... 407s Selecting previously unselected package r-cran-broom.helpers. 407s Preparing to unpack .../331-r-cran-broom.helpers_1.14.0-2_all.deb ... 407s Unpacking 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link group f95) doesn't exist 414s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 414s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 414s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 414s Setting up r-cran-bitops (1.0-7-1) ... 414s Setting up r-cran-rprojroot (2.0.4-1) ... 414s Setting up r-cran-bit64 (4.0.5-1) ... 414s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 414s Setting up r-cran-dichromat (1:2.0-0.1-1) ... 414s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 414s Setting up r-cran-deldir (2.0-4-1) ... 414s Setting up r-cran-askpass (1.2.0-1) ... 414s Setting up r-cran-fastmap (1.1.1-1) ... 414s Setting up r-cran-png (0.1-8-1) ... 414s Setting up r-bioc-biobase (2.62.0-1) ... 414s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 414s Setting up r-cran-rstudioapi (0.15.0-1) ... 414s Setting up r-cran-pkgconfig 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(2.1.5-1) ... 414s Setting up r-cran-waldo (0.5.2-1build1) ... 414s Setting up r-cran-tidyr (1.3.1-1) ... 414s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 414s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 414s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 414s Setting up r-cran-patchwork (1.2.0-1) ... 414s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 414s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 414s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 414s Setting up r-cran-haven (2.5.4-1) ... 414s Setting up r-bioc-annotationdbi (1.64.1-1) ... 414s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 414s Setting up r-cran-testthat (3.2.1-1) ... 414s Setting up r-cran-broom (1.0.5+dfsg-1) ... 414s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 414s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 414s Setting up r-cran-labelled (2.12.0-2) ... 414s Setting up r-bioc-genomicalignments (1.38.2-1) ... 414s Setting up r-cran-bookdown (0.37+dfsg-1) ... 414s Setting up r-bioc-rtracklayer (1.62.0-1) ... 414s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 414s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 414s Setting up r-cran-broom.helpers (1.14.0-2) ... 414s Setting up r-bioc-bsgenome (1.70.2-1) ... 414s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 414s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 414s Setting up r-bioc-organismdbi (1.44.0+dfsg-1) ... 414s Setting up r-cran-ggstats (0.5.1-2) ... 414s Setting up r-bioc-variantannotation (1.48.1-1) ... 414s Setting up r-cran-ggally (2.2.1-1) ... 414s Setting up r-cran-htmltable (2.4.2-1) ... 414s Setting up r-cran-hmisc (5.1-1-1) ... 414s Setting up r-bioc-biovizbase (1.50.0-1) ... 414s Setting up r-bioc-ggbio (1.50.0-1) ... 414s Processing triggers for libc-bin (2.39-0ubuntu2) ... 414s Processing triggers for man-db (2.12.0-3) ... 415s Processing triggers for install-info (7.1-3) ... 415s Processing triggers for tex-common (6.18) ... 416s Running updmap-sys. This may take some time... done. 416s Running mktexlsr /var/lib/texmf ... done. 416s Building format(s) --all. 446s This may take some time... done. 452s Reading package lists... 452s Building dependency tree... 452s Reading state information... 453s Starting pkgProblemResolver with broken count: 0 453s Starting 2 pkgProblemResolver with broken count: 0 453s Done 453s The following NEW packages will be installed: 453s autopkgtest-satdep 453s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 453s Need to get 0 B/696 B of archives. 453s After this operation, 0 B of additional disk space will be used. 453s Get:1 /tmp/autopkgtest.Qb5R6Y/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 453s Selecting previously unselected package autopkgtest-satdep. 454s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 127529 files and directories currently installed.) 454s Preparing to unpack .../2-autopkgtest-satdep.deb ... 454s Unpacking autopkgtest-satdep (0) ... 454s Setting up autopkgtest-satdep (0) ... 455s (Reading database ... 127529 files and directories currently installed.) 455s Removing autopkgtest-satdep (0) ... 455s autopkgtest [13:13:45]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 455s autopkgtest [13:13:45]: test pkg-r-autopkgtest: [----------------------- 455s Test: Try to load the R library ggbio 455s 455s R version 4.3.2 (2023-10-31) -- "Eye Holes" 455s Copyright (C) 2023 The R Foundation for Statistical Computing 455s Platform: x86_64-pc-linux-gnu (64-bit) 455s 455s R is free software and comes with ABSOLUTELY NO WARRANTY. 455s You are welcome to redistribute it under certain conditions. 455s Type 'license()' or 'licence()' for distribution details. 455s 455s R is a collaborative project with many contributors. 455s Type 'contributors()' for more information and 455s 'citation()' on how to cite R or R packages in publications. 455s 455s Type 'demo()' for some demos, 'help()' for on-line help, or 455s 'help.start()' for an HTML browser interface to help. 455s Type 'q()' to quit R. 455s 455s > library('ggbio') 455s Loading required package: BiocGenerics 456s 456s Attaching package: ‘BiocGenerics’ 456s 456s The following objects are masked from ‘package:stats’: 456s 456s IQR, mad, sd, var, xtabs 456s 456s The following objects are masked from ‘package:base’: 456s 456s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 456s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 456s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 456s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 456s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 456s table, tapply, union, unique, unsplit, which.max, which.min 456s 456s Loading required package: ggplot2 456s Registered S3 method overwritten by 'GGally': 456s method from 456s +.gg ggplot2 469s Need specific help about ggbio? try mailing 469s the maintainer or visit https://lawremi.github.io/ggbio/ 469s > 469s > 469s 469s Attaching package: 'ggbio' 469s 469s The following objects are masked from 'package:ggplot2': 469s 469s geom_bar, geom_rect, geom_segment, ggsave, stat_bin, stat_identity, 469s xlim 469s 469s Other tests are currently unsupported! 469s They will be progressively added. 469s autopkgtest [13:13:59]: test pkg-r-autopkgtest: -----------------------] 470s autopkgtest [13:14:00]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 470s pkg-r-autopkgtest PASS 470s autopkgtest [13:14:00]: @@@@@@@@@@@@@@@@@@@@ summary 470s pkg-r-autopkgtest PASS 480s Creating nova instance adt-noble-i386-r-bioc-ggbio-20240321-130610-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240320.img (UUID 3219a3f4-90ea-47d9-8dfb-3912f2ae9f95)...