0s autopkgtest [02:44:55]: starting date and time: 2024-03-22 02:44:55+0000 0s autopkgtest [02:44:55]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [02:44:55]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.k9yi00yt/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-geoquery --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-11.secgroup --name adt-noble-i386-r-bioc-geoquery-20240322-024455-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 504s autopkgtest [02:53:19]: testbed dpkg architecture: amd64 504s autopkgtest [02:53:19]: testbed apt version: 2.7.12 504s autopkgtest [02:53:19]: test architecture: i386 504s autopkgtest [02:53:19]: @@@@@@@@@@@@@@@@@@@@ test bed setup 504s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 504s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 504s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3762 kB] 504s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 504s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 504s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB] 504s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB] 504s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 504s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 504s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 504s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 504s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4236 kB] 504s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1269 kB] 505s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 505s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 505s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 505s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 507s Fetched 11.3 MB in 1s (8176 kB/s) 508s Reading package lists... 509s Reading package lists... 509s Building dependency tree... 509s Reading state information... 510s Calculating upgrade... 510s The following packages will be upgraded: 510s cloud-init fonts-ubuntu-console python3-markupsafe 510s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 510s Need to get 629 kB of archives. 510s After this operation, 11.3 kB disk space will be freed. 510s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 510s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 510s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 510s Preconfiguring packages ... 510s Fetched 629 kB in 0s (29.2 MB/s) 510s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 510s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 510s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 510s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 510s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 510s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 511s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 511s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 511s Setting up cloud-init (24.1.2-0ubuntu1) ... 512s Setting up python3-markupsafe (2.1.5-1build1) ... 512s Processing triggers for man-db (2.12.0-3) ... 513s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 513s Reading package lists... 513s Building dependency tree... 513s Reading state information... 514s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 514s sh: Attempting to set up Debian/Ubuntu apt sources automatically 514s sh: Distribution appears to be Ubuntu 515s Reading package lists... 515s Building dependency tree... 515s Reading state information... 516s eatmydata is already the newest version (131-1). 516s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 516s Reading package lists... 516s Building dependency tree... 516s Reading state information... 516s dbus is already the newest version (1.14.10-4ubuntu1). 516s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 516s Reading package lists... 517s Building dependency tree... 517s Reading state information... 517s rng-tools-debian is already the newest version (2.4). 517s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 517s Reading package lists... 517s Building dependency tree... 517s Reading state information... 517s The following packages will be REMOVED: 517s cloud-init* python3-configobj* python3-debconf* 518s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 518s After this operation, 3256 kB disk space will be freed. 518s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 518s Removing cloud-init (24.1.2-0ubuntu1) ... 518s Removing python3-configobj (5.0.8-3) ... 518s Removing python3-debconf (1.5.86) ... 518s Processing triggers for man-db (2.12.0-3) ... 519s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 519s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 519s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 519s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 519s invoke-rc.d: policy-rc.d denied execution of try-restart. 520s Reading package lists... 520s Building dependency tree... 520s Reading state information... 520s linux-generic is already the newest version (6.8.0-11.11+1). 520s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 520s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 520s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 520s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 522s Reading package lists... 522s Reading package lists... 522s Building dependency tree... 522s Reading state information... 523s Calculating upgrade... 523s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 523s Reading package lists... 523s Building dependency tree... 523s Reading state information... 523s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 523s autopkgtest [02:53:38]: rebooting testbed after setup commands that affected boot 661s autopkgtest [02:55:56]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 662s autopkgtest [02:55:57]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-geoquery 663s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-geoquery 2.70.0+dfsg-1 (dsc) [2267 B] 663s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-geoquery 2.70.0+dfsg-1 (tar) [13.4 MB] 663s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-geoquery 2.70.0+dfsg-1 (diff) [2972 B] 664s gpgv: Signature made Thu Nov 30 07:43:50 2023 UTC 664s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 664s gpgv: issuer "tille@debian.org" 664s gpgv: Can't check signature: No public key 664s dpkg-source: warning: cannot verify inline signature for ./r-bioc-geoquery_2.70.0+dfsg-1.dsc: no acceptable signature found 664s autopkgtest [02:55:59]: testing package r-bioc-geoquery version 2.70.0+dfsg-1 665s autopkgtest [02:56:00]: build not needed 667s autopkgtest [02:56:02]: test pkg-r-autopkgtest: preparing testbed 670s Note, using file '/tmp/autopkgtest.CR9ko4/1-autopkgtest-satdep.dsc' to get the build dependencies 671s Reading package lists... 671s Building dependency tree... 671s Reading state information... 671s Starting pkgProblemResolver with broken count: 0 671s Starting 2 pkgProblemResolver with broken count: 0 671s Done 671s The following NEW packages will be installed: 671s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 671s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 671s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 671s g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 671s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 671s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 671s javascript-common libasan8 libatomic1 libblas-dev libblas3 libbz2-dev 671s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1 671s libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 671s libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 671s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 671s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 671s libjs-highlight.js libjs-jquery libjs-jquery-datatables 671s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 671s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 671s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 671s liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 671s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 671s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 671s libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 libreadline-dev 671s libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 671s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 671s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev littler 671s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 671s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 671s r-bioc-biobase r-bioc-biocgenerics r-bioc-geoquery r-bioc-limma 671s r-cran-askpass r-cran-base64enc r-cran-bit r-cran-bit64 r-cran-brio 671s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-clipr 671s r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-curl 671s r-cran-data.table r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr 671s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap 671s r-cran-fontawesome r-cran-fs r-cran-generics r-cran-glue r-cran-highr 671s r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jquerylib 671s r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lazyeval r-cran-lifecycle 671s r-cran-littler r-cran-magrittr r-cran-markdown r-cran-memoise r-cran-mime 671s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 671s r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-prettyunits 671s r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-purrr 671s r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs 671s r-cran-rcpp r-cran-readr r-cran-rematch2 r-cran-rex r-cran-rlang 671s r-cran-rmarkdown r-cran-rprojroot r-cran-sass r-cran-shiny 671s r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr r-cran-sys 671s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 671s r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-vroom r-cran-waldo r-cran-withr 671s r-cran-xfun r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip 671s x11-common xdg-utils zip zlib1g-dev 671s 0 upgraded, 229 newly installed, 0 to remove and 0 not upgraded. 671s Need to get 241 MB of archives. 671s After this operation, 832 MB of additional disk space will be used. 671s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 671s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 671s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 671s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 671s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 671s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 671s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 671s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 672s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 672s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 672s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 672s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 672s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 672s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 672s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 672s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 672s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 672s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 672s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 672s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 672s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 672s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 672s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 672s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 672s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 672s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 672s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 672s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 672s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 672s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 672s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 672s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 672s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 672s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 672s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 672s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 672s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 672s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 672s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 672s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 672s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 672s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 672s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 672s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 672s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 672s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 672s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 672s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 672s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 672s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 672s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 672s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 672s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 672s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 672s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 672s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 672s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 672s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 672s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 672s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 672s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 672s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 672s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 672s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 672s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 672s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 672s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 672s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 672s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 672s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 672s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 672s Get:72 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 672s Get:73 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 672s Get:74 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 672s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 672s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 672s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 672s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 672s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 672s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 672s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 672s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 672s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 672s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 672s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 672s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 672s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 672s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 672s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 672s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 672s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 672s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 672s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 672s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 672s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 672s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 672s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 672s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 672s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 672s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 672s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 672s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 672s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 672s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 672s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 672s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 672s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 672s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 672s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 672s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 672s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 672s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 672s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 672s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 672s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 672s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 672s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 672s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 672s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 673s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 673s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 673s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 673s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 673s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 673s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 673s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 673s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 673s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 673s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 673s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 673s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 673s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 673s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 673s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 673s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 673s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-clipr all 0.8.0-1 [53.5 kB] 673s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 673s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 673s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 673s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 673s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 673s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 673s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 673s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 673s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 673s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 673s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 673s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 673s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 673s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 673s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 673s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 673s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 673s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 673s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] 673s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 673s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 673s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vroom amd64 1.6.5-1 [848 kB] 673s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 673s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 673s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-readr amd64 2.1.5-1 [766 kB] 673s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 673s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 673s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 673s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-data.table amd64 1.14.10+dfsg-1 [1837 kB] 673s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 673s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 673s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 673s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 673s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 673s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-limma amd64 3.58.1+dfsg-1 [1899 kB] 673s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 673s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 673s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.oo all 1.26.0-1 [955 kB] 673s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.utils all 2.12.3-1 [1386 kB] 673s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-geoquery all 2.70.0+dfsg-1 [13.7 MB] 673s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 673s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 673s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 673s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 673s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 673s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 673s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 673s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 673s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 673s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 673s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 673s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 673s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 673s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 673s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 673s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 673s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 673s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 673s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 673s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 673s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 673s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 673s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rex all 1.2.1-1 [129 kB] 673s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 673s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 673s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 673s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 673s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 673s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 674s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 674s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 674s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 674s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 674s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 674s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 674s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 674s Get:213 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 674s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 674s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-markdown all 1.12+dfsg-1 [179 kB] 674s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 674s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 674s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 674s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 674s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 674s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 674s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 674s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 674s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 674s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 674s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 674s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 674s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 674s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 674s Preconfiguring packages ... 674s Fetched 241 MB in 2s (108 MB/s) 674s Selecting previously unselected package libc-dev-bin. 675s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 675s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 675s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 675s Selecting previously unselected package linux-libc-dev:amd64. 675s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 675s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 675s Selecting previously unselected package libcrypt-dev:amd64. 675s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 675s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 675s Selecting previously unselected package libtirpc-dev:amd64. 675s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 675s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 675s Selecting previously unselected package libnsl-dev:amd64. 675s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 675s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 675s Selecting previously unselected package rpcsvc-proto. 675s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 675s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 675s Selecting previously unselected package libc6-dev:amd64. 675s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 675s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 675s Selecting previously unselected package libisl23:amd64. 675s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 675s Unpacking libisl23:amd64 (0.26-3) ... 675s Selecting previously unselected package libmpc3:amd64. 675s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 675s Unpacking libmpc3:amd64 (1.3.1-1) ... 675s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 675s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 675s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 675s Selecting previously unselected package cpp-13. 675s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 675s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 675s Selecting previously unselected package cpp-x86-64-linux-gnu. 675s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 675s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 675s Selecting previously unselected package cpp. 675s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 675s Unpacking cpp (4:13.2.0-7ubuntu1) ... 675s Selecting previously unselected package libcc1-0:amd64. 675s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 675s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 675s Selecting previously unselected package libgomp1:amd64. 675s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 675s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 675s Selecting previously unselected package libitm1:amd64. 675s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 675s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 675s Selecting previously unselected package libatomic1:amd64. 675s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 675s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 675s Selecting previously unselected package libasan8:amd64. 675s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 675s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 676s Selecting previously unselected package liblsan0:amd64. 676s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 676s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 676s Selecting previously unselected package libtsan2:amd64. 676s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 676s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 676s Selecting previously unselected package libubsan1:amd64. 676s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 676s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 676s Selecting previously unselected package libhwasan0:amd64. 676s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 676s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 676s Selecting previously unselected package libquadmath0:amd64. 676s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 676s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 676s Selecting previously unselected package libgcc-13-dev:amd64. 676s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 676s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 676s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 676s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 676s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 676s Selecting previously unselected package gcc-13. 676s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 676s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 676s Selecting previously unselected package gcc-x86-64-linux-gnu. 676s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 676s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 676s Selecting previously unselected package gcc. 676s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 676s Unpacking gcc (4:13.2.0-7ubuntu1) ... 676s Selecting previously unselected package libstdc++-13-dev:amd64. 676s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 676s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 677s Selecting previously unselected package g++-13-x86-64-linux-gnu. 677s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 677s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 677s Selecting previously unselected package g++-13. 677s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 677s Unpacking g++-13 (13.2.0-17ubuntu2) ... 677s Selecting previously unselected package g++-x86-64-linux-gnu. 677s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 677s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 677s Selecting previously unselected package g++. 677s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 677s Unpacking g++ (4:13.2.0-7ubuntu1) ... 677s Selecting previously unselected package build-essential. 677s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 677s Unpacking build-essential (12.10ubuntu1) ... 677s Selecting previously unselected package dctrl-tools. 677s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 677s Unpacking dctrl-tools (2.24-3build2) ... 677s Selecting previously unselected package fonts-dejavu-mono. 677s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 677s Unpacking fonts-dejavu-mono (2.37-8) ... 677s Selecting previously unselected package fonts-dejavu-core. 677s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 677s Unpacking fonts-dejavu-core (2.37-8) ... 677s Selecting previously unselected package fontconfig-config. 677s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 677s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 677s Selecting previously unselected package libfontconfig1:amd64. 677s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 677s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 677s Selecting previously unselected package fontconfig. 677s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 677s Unpacking fontconfig (2.15.0-1ubuntu1) ... 677s Selecting previously unselected package fonts-font-awesome. 677s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 677s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 677s Selecting previously unselected package fonts-glyphicons-halflings. 677s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 677s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 677s Selecting previously unselected package fonts-mathjax. 677s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 677s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 678s Selecting previously unselected package libgfortran5:amd64. 678s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 678s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 678s Selecting previously unselected package libgfortran-13-dev:amd64. 678s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 678s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 678s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 678s Preparing to unpack .../045-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 678s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 678s Selecting previously unselected package gfortran-13. 678s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 678s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 678s Selecting previously unselected package gfortran-x86-64-linux-gnu. 678s Preparing to unpack .../047-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 678s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 678s Selecting previously unselected package gfortran. 678s Preparing to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 678s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 678s Selecting previously unselected package icu-devtools. 678s Preparing to unpack .../049-icu-devtools_74.2-1ubuntu1_amd64.deb ... 678s Unpacking icu-devtools (74.2-1ubuntu1) ... 678s Selecting previously unselected package javascript-common. 678s Preparing to unpack .../050-javascript-common_11+nmu1_all.deb ... 678s Unpacking javascript-common (11+nmu1) ... 678s Selecting previously unselected package libblas3:amd64. 678s Preparing to unpack .../051-libblas3_3.12.0-3_amd64.deb ... 678s Unpacking libblas3:amd64 (3.12.0-3) ... 678s Selecting previously unselected package libblas-dev:amd64. 678s Preparing to unpack .../052-libblas-dev_3.12.0-3_amd64.deb ... 678s Unpacking libblas-dev:amd64 (3.12.0-3) ... 678s Selecting previously unselected package libbz2-dev:amd64. 678s Preparing to unpack .../053-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 678s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 678s Selecting previously unselected package libpixman-1-0:amd64. 678s Preparing to unpack .../054-libpixman-1-0_0.42.2-1_amd64.deb ... 678s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 678s Selecting previously unselected package libxcb-render0:amd64. 678s Preparing to unpack .../055-libxcb-render0_1.15-1_amd64.deb ... 678s Unpacking libxcb-render0:amd64 (1.15-1) ... 678s Selecting previously unselected package libxcb-shm0:amd64. 678s Preparing to unpack .../056-libxcb-shm0_1.15-1_amd64.deb ... 678s Unpacking libxcb-shm0:amd64 (1.15-1) ... 678s Selecting previously unselected package libxrender1:amd64. 678s Preparing to unpack .../057-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 678s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 678s Selecting previously unselected package libcairo2:amd64. 678s Preparing to unpack .../058-libcairo2_1.18.0-1_amd64.deb ... 678s Unpacking libcairo2:amd64 (1.18.0-1) ... 678s Selecting previously unselected package libdatrie1:amd64. 678s Preparing to unpack .../059-libdatrie1_0.2.13-3_amd64.deb ... 678s Unpacking libdatrie1:amd64 (0.2.13-3) ... 678s Selecting previously unselected package libdeflate0:amd64. 678s Preparing to unpack .../060-libdeflate0_1.19-1_amd64.deb ... 678s Unpacking libdeflate0:amd64 (1.19-1) ... 678s Selecting previously unselected package libgraphite2-3:amd64. 678s Preparing to unpack .../061-libgraphite2-3_1.3.14-2_amd64.deb ... 678s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 678s Selecting previously unselected package libharfbuzz0b:amd64. 678s Preparing to unpack .../062-libharfbuzz0b_8.3.0-2_amd64.deb ... 678s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 678s Selecting previously unselected package x11-common. 678s Preparing to unpack .../063-x11-common_1%3a7.7+23ubuntu2_all.deb ... 678s Unpacking x11-common (1:7.7+23ubuntu2) ... 678s Selecting previously unselected package libice6:amd64. 678s Preparing to unpack .../064-libice6_2%3a1.0.10-1build2_amd64.deb ... 678s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 678s Selecting previously unselected package libicu-dev:amd64. 678s Preparing to unpack .../065-libicu-dev_74.2-1ubuntu1_amd64.deb ... 678s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 679s Selecting previously unselected package libjpeg-turbo8:amd64. 679s Preparing to unpack .../066-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 679s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 679s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 679s Preparing to unpack .../067-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 679s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 679s Selecting previously unselected package libjpeg8:amd64. 679s Preparing to unpack .../068-libjpeg8_8c-2ubuntu11_amd64.deb ... 679s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 679s Selecting previously unselected package libjpeg8-dev:amd64. 679s Preparing to unpack .../069-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 679s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 679s Selecting previously unselected package libjpeg-dev:amd64. 679s Preparing to unpack .../070-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 679s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 679s Selecting previously unselected package libjs-bootstrap. 679s Preparing to unpack .../071-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 679s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 679s Selecting previously unselected package libjs-popper.js. 679s Preparing to unpack .../072-libjs-popper.js_1.16.1+ds-6_all.deb ... 679s Unpacking libjs-popper.js (1.16.1+ds-6) ... 679s Selecting previously unselected package libjs-bootstrap4. 679s Preparing to unpack .../073-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 679s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 679s Selecting previously unselected package libjs-d3. 679s Preparing to unpack .../074-libjs-d3_3.5.17-4_all.deb ... 679s Unpacking libjs-d3 (3.5.17-4) ... 679s Selecting previously unselected package libjs-es5-shim. 679s Preparing to unpack .../075-libjs-es5-shim_4.6.7-2_all.deb ... 679s Unpacking libjs-es5-shim (4.6.7-2) ... 679s Selecting previously unselected package libjs-highlight.js. 679s Preparing to unpack .../076-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 679s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 679s Selecting previously unselected package libjs-jquery. 679s Preparing to unpack .../077-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 679s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 679s Selecting previously unselected package libjs-jquery-datatables. 679s Preparing to unpack .../078-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 679s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 679s Selecting previously unselected package libjs-sifter.js. 679s Preparing to unpack .../079-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 679s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 679s Selecting previously unselected package libjs-microplugin.js. 679s Preparing to unpack .../080-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 679s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 679s Selecting previously unselected package libjs-jquery-selectize.js. 679s Preparing to unpack .../081-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 679s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 679s Selecting previously unselected package libjs-jquery-ui. 679s Preparing to unpack .../082-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 679s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 679s Selecting previously unselected package libjs-json. 679s Preparing to unpack .../083-libjs-json_0~20221030+~1.0.8-1_all.deb ... 679s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 679s Selecting previously unselected package libjs-prettify. 679s Preparing to unpack .../084-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 679s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 679s Selecting previously unselected package liblapack3:amd64. 679s Preparing to unpack .../085-liblapack3_3.12.0-3_amd64.deb ... 679s Unpacking liblapack3:amd64 (3.12.0-3) ... 679s Selecting previously unselected package liblapack-dev:amd64. 679s Preparing to unpack .../086-liblapack-dev_3.12.0-3_amd64.deb ... 679s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 680s Selecting previously unselected package liblerc4:amd64. 680s Preparing to unpack .../087-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 680s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 680s Selecting previously unselected package liblua5.4-0:amd64. 680s Preparing to unpack .../088-liblua5.4-0_5.4.6-3_amd64.deb ... 680s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 680s Selecting previously unselected package libncurses-dev:amd64. 680s Preparing to unpack .../089-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 680s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 680s Selecting previously unselected package libthai-data. 680s Preparing to unpack .../090-libthai-data_0.1.29-2_all.deb ... 680s Unpacking libthai-data (0.1.29-2) ... 680s Selecting previously unselected package libthai0:amd64. 680s Preparing to unpack .../091-libthai0_0.1.29-2_amd64.deb ... 680s Unpacking libthai0:amd64 (0.1.29-2) ... 680s Selecting previously unselected package libpango-1.0-0:amd64. 680s Preparing to unpack .../092-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 680s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 680s Selecting previously unselected package libpangoft2-1.0-0:amd64. 680s Preparing to unpack .../093-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 680s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 680s Selecting previously unselected package libpangocairo-1.0-0:amd64. 680s Preparing to unpack .../094-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 680s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 680s Selecting previously unselected package libpaper1:amd64. 680s Preparing to unpack .../095-libpaper1_1.1.29_amd64.deb ... 680s Unpacking libpaper1:amd64 (1.1.29) ... 680s Selecting previously unselected package libpaper-utils. 680s Preparing to unpack .../096-libpaper-utils_1.1.29_amd64.deb ... 680s Unpacking libpaper-utils (1.1.29) ... 680s Selecting previously unselected package libpcre2-16-0:amd64. 680s Preparing to unpack .../097-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 680s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 680s Selecting previously unselected package libpcre2-32-0:amd64. 680s Preparing to unpack .../098-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 680s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 680s Selecting previously unselected package libpcre2-posix3:amd64. 680s Preparing to unpack .../099-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 680s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 680s Selecting previously unselected package libpcre2-dev:amd64. 680s Preparing to unpack .../100-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 680s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 680s Selecting previously unselected package libpkgconf3:amd64. 680s Preparing to unpack .../101-libpkgconf3_1.8.1-2_amd64.deb ... 680s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 680s Selecting previously unselected package zlib1g-dev:amd64. 680s Preparing to unpack .../102-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 680s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 680s Selecting previously unselected package libpng-dev:amd64. 680s Preparing to unpack .../103-libpng-dev_1.6.43-1_amd64.deb ... 680s Unpacking libpng-dev:amd64 (1.6.43-1) ... 680s Selecting previously unselected package libreadline-dev:amd64. 680s Preparing to unpack .../104-libreadline-dev_8.2-3_amd64.deb ... 680s Unpacking libreadline-dev:amd64 (8.2-3) ... 680s Selecting previously unselected package libsharpyuv0:amd64. 680s Preparing to unpack .../105-libsharpyuv0_1.3.2-0.4_amd64.deb ... 680s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 680s Selecting previously unselected package libsm6:amd64. 680s Preparing to unpack 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(2.3.6-1) ... 680s Selecting previously unselected package libxss1:amd64. 680s Preparing to unpack .../112-libxss1_1%3a1.2.3-1build2_amd64.deb ... 680s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 680s Selecting previously unselected package libtk8.6:amd64. 680s Preparing to unpack .../113-libtk8.6_8.6.13-2_amd64.deb ... 680s Unpacking libtk8.6:amd64 (8.6.13-2) ... 681s Selecting previously unselected package libxt6:amd64. 681s Preparing to unpack .../114-libxt6_1%3a1.2.1-1.1_amd64.deb ... 681s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 681s Selecting previously unselected package zip. 681s Preparing to unpack .../115-zip_3.0-13_amd64.deb ... 681s Unpacking zip (3.0-13) ... 681s Selecting previously unselected package unzip. 681s Preparing to unpack .../116-unzip_6.0-28ubuntu3_amd64.deb ... 681s Unpacking unzip (6.0-28ubuntu3) ... 681s Selecting previously unselected package xdg-utils. 681s Preparing to unpack .../117-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 681s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 681s Selecting previously unselected package r-base-core. 681s Preparing to unpack .../118-r-base-core_4.3.2-1build1_amd64.deb ... 681s Unpacking r-base-core (4.3.2-1build1) ... 681s Selecting previously unselected package r-cran-littler. 681s Preparing to unpack .../119-r-cran-littler_0.3.19-1_amd64.deb ... 681s Unpacking r-cran-littler (0.3.19-1) ... 681s Selecting previously unselected package littler. 681s Preparing to unpack .../120-littler_0.3.19-1_all.deb ... 681s Unpacking littler (0.3.19-1) ... 681s Selecting previously unselected package node-bootstrap-sass. 681s Preparing to unpack .../121-node-bootstrap-sass_3.4.3-2_all.deb ... 681s Unpacking node-bootstrap-sass (3.4.3-2) ... 681s Selecting previously unselected package node-html5shiv. 681s Preparing to unpack .../122-node-html5shiv_3.7.3+dfsg-5_all.deb ... 681s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 681s Selecting previously unselected package node-normalize.css. 681s Preparing to unpack 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Preparing to unpack .../129-liblzma-dev_5.4.5-0.3_amd64.deb ... 682s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 682s Selecting previously unselected package r-base-dev. 682s Preparing to unpack .../130-r-base-dev_4.3.2-1build1_all.deb ... 682s Unpacking r-base-dev (4.3.2-1build1) ... 682s Selecting previously unselected package pkg-r-autopkgtest. 682s Preparing to unpack .../131-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 682s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 682s Selecting previously unselected package r-bioc-biocgenerics. 682s Preparing to unpack .../132-r-bioc-biocgenerics_0.48.1-2_all.deb ... 682s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 682s Selecting previously unselected package r-bioc-biobase. 682s Preparing to unpack .../133-r-bioc-biobase_2.62.0-1_amd64.deb ... 682s Unpacking r-bioc-biobase (2.62.0-1) ... 682s Selecting previously unselected package r-cran-cli. 682s Preparing to unpack .../134-r-cran-cli_3.6.2-1_amd64.deb ... 682s Unpacking r-cran-cli (3.6.2-1) ... 682s Selecting previously unselected package r-cran-clipr. 682s Preparing to unpack .../135-r-cran-clipr_0.8.0-1_all.deb ... 682s Unpacking r-cran-clipr (0.8.0-1) ... 682s Selecting previously unselected package r-cran-crayon. 682s Preparing to unpack .../136-r-cran-crayon_1.5.2-1_all.deb ... 682s Unpacking r-cran-crayon (1.5.2-1) ... 682s Selecting previously unselected package r-cran-glue. 682s Preparing to unpack .../137-r-cran-glue_1.7.0-1_amd64.deb ... 682s Unpacking r-cran-glue (1.7.0-1) ... 682s Selecting previously unselected package r-cran-rlang. 682s Preparing to unpack .../138-r-cran-rlang_1.1.3-1_amd64.deb ... 682s Unpacking r-cran-rlang (1.1.3-1) ... 683s Selecting previously unselected package r-cran-lifecycle. 683s Preparing to unpack .../139-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 683s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 683s Selecting previously unselected package r-cran-pkgconfig. 683s Preparing to unpack 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Preparing to unpack .../146-r-cran-utf8_1.2.4-1_amd64.deb ... 683s Unpacking r-cran-utf8 (1.2.4-1) ... 683s Selecting previously unselected package r-cran-pillar. 683s Preparing to unpack .../147-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 683s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 683s Selecting previously unselected package r-cran-tibble. 683s Preparing to unpack .../148-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 683s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 683s Selecting previously unselected package r-cran-bit. 683s Preparing to unpack .../149-r-cran-bit_4.0.5-1_amd64.deb ... 683s Unpacking r-cran-bit (4.0.5-1) ... 683s Selecting previously unselected package r-cran-bit64. 683s Preparing to unpack .../150-r-cran-bit64_4.0.5-1_amd64.deb ... 683s Unpacking r-cran-bit64 (4.0.5-1) ... 683s Selecting previously unselected package r-cran-withr. 683s Preparing to unpack .../151-r-cran-withr_2.5.0-1_all.deb ... 683s Unpacking r-cran-withr (2.5.0-1) ... 683s Selecting previously unselected package r-cran-tidyselect. 683s Preparing to unpack .../152-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 683s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 683s Selecting previously unselected package r-cran-cpp11. 683s Preparing to unpack .../153-r-cran-cpp11_0.4.7-1_all.deb ... 683s Unpacking r-cran-cpp11 (0.4.7-1) ... 683s Selecting previously unselected package r-cran-tzdb. 683s Preparing to unpack .../154-r-cran-tzdb_0.4.0-2_amd64.deb ... 683s Unpacking r-cran-tzdb (0.4.0-2) ... 683s Selecting previously unselected package r-cran-prettyunits. 683s Preparing to unpack .../155-r-cran-prettyunits_1.2.0-1_all.deb ... 683s Unpacking r-cran-prettyunits (1.2.0-1) ... 683s Selecting previously unselected package r-cran-progress. 683s Preparing to unpack .../156-r-cran-progress_1.2.3-1_all.deb ... 683s Unpacking r-cran-progress (1.2.3-1) ... 683s Selecting previously unselected package r-cran-vroom. 683s Preparing to unpack .../157-r-cran-vroom_1.6.5-1_amd64.deb ... 683s Unpacking r-cran-vroom (1.6.5-1) ... 683s Selecting previously unselected package r-cran-pkgkitten. 683s Preparing to unpack .../158-r-cran-pkgkitten_0.2.3-1_all.deb ... 683s Unpacking r-cran-pkgkitten (0.2.3-1) ... 683s Selecting previously unselected package r-cran-rcpp. 683s Preparing to unpack .../159-r-cran-rcpp_1.0.12-1_amd64.deb ... 683s Unpacking r-cran-rcpp (1.0.12-1) ... 683s Selecting previously unselected package r-cran-readr. 684s Preparing to unpack .../160-r-cran-readr_2.1.5-1_amd64.deb ... 684s Unpacking r-cran-readr (2.1.5-1) ... 684s Selecting previously unselected package r-cran-xml2. 684s Preparing to unpack .../161-r-cran-xml2_1.3.6-1_amd64.deb ... 684s Unpacking r-cran-xml2 (1.3.6-1) ... 684s Selecting previously unselected package r-cran-generics. 684s Preparing to unpack .../162-r-cran-generics_0.1.3-1_all.deb ... 684s Unpacking r-cran-generics (0.1.3-1) ... 684s Selecting previously unselected package r-cran-dplyr. 684s Preparing to unpack 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unselected package r-cran-statmod. 684s Preparing to unpack .../169-r-cran-statmod_1.5.0-1_amd64.deb ... 684s Unpacking r-cran-statmod (1.5.0-1) ... 684s Selecting previously unselected package r-bioc-limma. 684s Preparing to unpack .../170-r-bioc-limma_3.58.1+dfsg-1_amd64.deb ... 684s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 684s Selecting previously unselected package r-cran-curl. 684s Preparing to unpack .../171-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 684s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 684s Selecting previously unselected package r-cran-r.methodss3. 684s Preparing to unpack .../172-r-cran-r.methodss3_1.8.2-1_all.deb ... 684s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 684s Selecting previously unselected package r-cran-r.oo. 684s Preparing to unpack .../173-r-cran-r.oo_1.26.0-1_all.deb ... 684s Unpacking r-cran-r.oo (1.26.0-1) ... 684s Selecting previously unselected package r-cran-r.utils. 684s Preparing to unpack .../174-r-cran-r.utils_2.12.3-1_all.deb ... 684s Unpacking r-cran-r.utils (2.12.3-1) ... 684s Selecting previously unselected package r-bioc-geoquery. 684s Preparing to unpack .../175-r-bioc-geoquery_2.70.0+dfsg-1_all.deb ... 684s Unpacking r-bioc-geoquery (2.70.0+dfsg-1) ... 684s Selecting previously unselected package r-cran-sys. 684s Preparing to unpack .../176-r-cran-sys_3.4.2-1_amd64.deb ... 684s Unpacking r-cran-sys (3.4.2-1) ... 684s Selecting previously unselected package r-cran-askpass. 684s Preparing to unpack .../177-r-cran-askpass_1.2.0-1_amd64.deb ... 684s Unpacking r-cran-askpass (1.2.0-1) ... 684s Selecting previously unselected package r-cran-base64enc. 684s Preparing to unpack .../178-r-cran-base64enc_0.1-3-3_amd64.deb ... 684s Unpacking r-cran-base64enc (0.1-3-3) ... 684s Selecting previously unselected package r-cran-brio. 684s Preparing to unpack .../179-r-cran-brio_1.1.4-1_amd64.deb ... 684s Unpacking r-cran-brio (1.1.4-1) ... 684s Selecting previously unselected package r-cran-fastmap. 684s Preparing to unpack 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previously unselected package r-cran-jsonlite. 685s Preparing to unpack .../186-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 685s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 685s Selecting previously unselected package r-cran-memoise. 685s Preparing to unpack .../187-r-cran-memoise_2.0.1-1_all.deb ... 685s Unpacking r-cran-memoise (2.0.1-1) ... 685s Selecting previously unselected package r-cran-mime. 685s Preparing to unpack .../188-r-cran-mime_0.12-1_amd64.deb ... 685s Unpacking r-cran-mime (0.12-1) ... 685s Selecting previously unselected package r-cran-fs. 685s Preparing to unpack .../189-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 685s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 685s Selecting previously unselected package r-cran-rappdirs. 685s Preparing to unpack .../190-r-cran-rappdirs_0.3.3-1_amd64.deb ... 685s Unpacking r-cran-rappdirs (0.3.3-1) ... 685s Selecting previously unselected package r-cran-sass. 685s Preparing to unpack .../191-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 685s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 685s Selecting previously unselected package r-cran-bslib. 685s Preparing to unpack .../192-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 685s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 685s Selecting previously unselected package r-cran-ps. 685s Preparing to unpack .../193-r-cran-ps_1.7.6-1_amd64.deb ... 685s Unpacking r-cran-ps (1.7.6-1) ... 685s Selecting previously unselected package r-cran-processx. 685s Preparing to unpack .../194-r-cran-processx_3.8.3-1_amd64.deb ... 685s Unpacking r-cran-processx (3.8.3-1) ... 685s Selecting previously unselected package r-cran-callr. 685s Preparing to unpack .../195-r-cran-callr_3.7.3-2_all.deb ... 685s Unpacking r-cran-callr (3.7.3-2) ... 685s Selecting previously unselected package r-cran-commonmark. 685s Preparing to unpack .../196-r-cran-commonmark_1.9.1-1_amd64.deb ... 685s Unpacking r-cran-commonmark (1.9.1-1) ... 685s Selecting previously unselected package r-cran-lazyeval. 685s Preparing to unpack .../197-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 685s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 685s Selecting previously unselected package r-cran-rex. 685s Preparing to unpack .../198-r-cran-rex_1.2.1-1_all.deb ... 685s Unpacking r-cran-rex (1.2.1-1) ... 685s Selecting previously unselected package r-cran-openssl. 685s Preparing to unpack .../199-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 685s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 685s Selecting previously unselected package r-cran-httr. 685s Preparing to unpack .../200-r-cran-httr_1.4.7+dfsg-1_all.deb ... 685s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 685s Selecting previously unselected package r-cran-yaml. 685s Preparing to unpack .../201-r-cran-yaml_2.3.8-1_amd64.deb ... 685s Unpacking r-cran-yaml (2.3.8-1) ... 685s Selecting previously unselected package r-cran-covr. 685s Preparing to unpack .../202-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 685s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 685s Selecting previously unselected package r-cran-desc. 685s Preparing to unpack .../203-r-cran-desc_1.4.3-1_all.deb ... 685s Unpacking r-cran-desc (1.4.3-1) ... 685s Selecting previously unselected package r-cran-diffobj. 685s Preparing to unpack .../204-r-cran-diffobj_0.3.5-1_amd64.deb ... 685s Unpacking r-cran-diffobj (0.3.5-1) ... 686s Selecting previously unselected package r-cran-evaluate. 686s Preparing to unpack .../205-r-cran-evaluate_0.23-1_all.deb ... 686s Unpacking r-cran-evaluate (0.23-1) ... 686s Selecting previously unselected package r-cran-fontawesome. 686s Preparing to unpack .../206-r-cran-fontawesome_0.5.2-1_all.deb ... 686s Unpacking r-cran-fontawesome (0.5.2-1) ... 686s Selecting previously unselected package r-cran-xfun. 686s Preparing to unpack .../207-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 686s Unpacking r-cran-xfun (0.41+dfsg-1) ... 686s Selecting previously unselected package r-cran-highr. 686s Preparing to unpack .../208-r-cran-highr_0.10+dfsg-1_all.deb ... 686s Unpacking r-cran-highr (0.10+dfsg-1) ... 686s Selecting previously unselected package r-cran-later. 686s Preparing to unpack .../209-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 686s Unpacking r-cran-later (1.3.2+dfsg-1) ... 686s Selecting previously unselected package r-cran-promises. 686s Preparing to unpack .../210-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 686s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 686s Selecting previously unselected package r-cran-httpuv. 686s Preparing to unpack .../211-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 686s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 686s Selecting previously unselected package libjs-mathjax. 686s Preparing to unpack .../212-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 686s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 687s Selecting previously unselected package r-cran-knitr. 687s Preparing to unpack .../213-r-cran-knitr_1.45+dfsg-1_all.deb ... 687s Unpacking r-cran-knitr (1.45+dfsg-1) ... 687s Selecting previously unselected package r-cran-markdown. 687s Preparing to unpack .../214-r-cran-markdown_1.12+dfsg-1_all.deb ... 687s Unpacking r-cran-markdown (1.12+dfsg-1) ... 687s Selecting previously unselected package r-cran-pkgbuild. 687s Preparing to unpack .../215-r-cran-pkgbuild_1.4.3-1_all.deb ... 687s Unpacking r-cran-pkgbuild (1.4.3-1) ... 687s Selecting previously unselected package r-cran-rprojroot. 687s Preparing to unpack .../216-r-cran-rprojroot_2.0.4-1_all.deb ... 687s Unpacking r-cran-rprojroot (2.0.4-1) ... 687s Selecting previously unselected package r-cran-pkgload. 687s Preparing to unpack .../217-r-cran-pkgload_1.3.4-1_all.deb ... 687s Unpacking r-cran-pkgload (1.3.4-1) ... 687s Selecting previously unselected package r-cran-praise. 687s Preparing to unpack .../218-r-cran-praise_1.0.0-4build1_all.deb ... 687s Unpacking r-cran-praise (1.0.0-4build1) ... 687s Selecting previously unselected package r-cran-rematch2. 687s Preparing to unpack .../219-r-cran-rematch2_2.1.2-2build1_all.deb ... 687s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 687s Selecting previously unselected package r-cran-tinytex. 687s Preparing to unpack .../220-r-cran-tinytex_0.49-1_all.deb ... 687s Unpacking r-cran-tinytex (0.49-1) ... 687s Selecting previously unselected package libjs-modernizr. 687s Preparing to unpack .../221-libjs-modernizr_2.6.2+ds1-5_all.deb ... 687s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 687s Selecting previously unselected package r-cran-xtable. 687s Preparing to unpack .../222-r-cran-xtable_1%3a1.8-4-2_all.deb ... 687s Unpacking r-cran-xtable (1:1.8-4-2) ... 687s Selecting previously unselected package r-cran-sourcetools. 687s Preparing to unpack .../223-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 687s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 687s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 687s Preparing to unpack .../224-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 687s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 687s Selecting previously unselected package r-cran-shiny. 687s Preparing to unpack .../225-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 687s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 687s Selecting previously unselected package r-cran-rmarkdown. 687s Preparing to unpack .../226-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 687s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 687s Selecting previously unselected package r-cran-waldo. 687s Preparing to unpack .../227-r-cran-waldo_0.5.2-1build1_all.deb ... 687s Unpacking r-cran-waldo (0.5.2-1build1) ... 687s Selecting previously unselected package r-cran-testthat. 687s Preparing to unpack .../228-r-cran-testthat_3.2.1-1_amd64.deb ... 687s Unpacking r-cran-testthat (3.2.1-1) ... 687s Setting up libjs-json (0~20221030+~1.0.8-1) ... 687s Setting up javascript-common (11+nmu1) ... 688s Setting up libgraphite2-3:amd64 (1.3.14-2) ... 688s Setting up libpixman-1-0:amd64 (0.42.2-1) ... 688s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ... 688s Setting up libpaper1:amd64 (1.1.29) ... 688s 688s Creating config file /etc/papersize with new version 688s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 688s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 688s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 688s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 688s Setting up libdatrie1:amd64 (0.2.13-3) ... 688s Setting up libjs-popper.js (1.16.1+ds-6) ... 688s Setting up libxcb-render0:amd64 (1.15-1) ... 688s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 688s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 688s Setting up unzip (6.0-28ubuntu3) ... 688s Setting up x11-common (1:7.7+23ubuntu2) ... 688s Setting up node-html5shiv (3.7.3+dfsg-5) ... 688s Setting up libdeflate0:amd64 (1.19-1) ... 688s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 688s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 688s Setting up libxcb-shm0:amd64 (1.15-1) ... 688s Setting up libpaper-utils (1.1.29) ... 688s Setting up libgomp1:amd64 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688s Setting up icu-devtools (74.2-1ubuntu1) ... 688s Setting up fonts-dejavu-core (2.37-8) ... 688s Setting up pkgconf-bin (1.8.1-2) ... 688s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 688s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 688s Setting up libwebp7:amd64 (1.3.2-0.4) ... 688s Setting up liblzma-dev:amd64 (5.4.5-0.3) ... 688s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ... 688s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 688s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 688s Setting up libnsl-dev:amd64 (1.3.0-3) ... 688s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 688s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 688s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 688s Setting up liblua5.4-0:amd64 (5.4.6-3) ... 688s Setting up libharfbuzz0b:amd64 (8.3.0-2) ... 688s Setting up libthai-data (0.1.29-2) ... 688s Setting up node-bootstrap-sass (3.4.3-2) ... 688s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 688s 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up libjs-bootstrap (3.4.1+dfsg-3) ... 688s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 688s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 688s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 688s Setting up libice6:amd64 (2:1.0.10-1build2) ... 688s Setting up liblapack3:amd64 (3.12.0-3) ... 688s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 688s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 688s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 689s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 689s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 689s Setting up pkgconf:amd64 (1.8.1-2) ... 689s Setting up libthai0:amd64 (0.1.29-2) ... 689s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 689s Setting up pandoc (3.1.3+ds-2) ... 689s Setting up liblapack-dev:amd64 (3.12.0-3) ... 689s update-alternatives: 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libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 691s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ... 691s Setting up cpp-13 (13.2.0-17ubuntu2) ... 691s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 691s Setting up libtk8.6:amd64 (8.6.13-2) ... 691s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... 691s Setting up libreadline-dev:amd64 (8.2-3) ... 691s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 691s Setting up libcairo2:amd64 (1.18.0-1) ... 691s Setting up gcc-13 (13.2.0-17ubuntu2) ... 691s Setting up libxt6:amd64 (1:1.2.1-1.1) ... 691s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 691s Setting up cpp (4:13.2.0-7ubuntu1) ... 691s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 691s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 691s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 691s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 691s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 691s Setting up libpng-dev:amd64 (1.6.43-1) ... 691s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 691s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 691s Setting up gcc (4:13.2.0-7ubuntu1) ... 691s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 691s Setting up r-base-core (4.3.2-1build1) ... 691s 691s Creating config file /etc/R/Renviron with new version 691s Setting up r-cran-crayon (1.5.2-1) ... 691s Setting up r-cran-sourcetools (0.1.7-1-1) ... 691s Setting up r-cran-ps (1.7.6-1) ... 691s Setting up r-cran-statmod (1.5.0-1) ... 691s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 691s Setting up r-cran-lazyeval (0.2.2-1build1) ... 691s Setting up r-cran-clipr (0.8.0-1) ... 691s Setting up r-cran-commonmark (1.9.1-1) ... 691s Setting up r-cran-r6 (2.5.1-1) ... 691s Setting up r-cran-pkgkitten (0.2.3-1) ... 691s Setting up r-cran-magrittr (2.0.3-1) ... 691s Setting up r-cran-rappdirs (0.3.3-1) ... 691s Setting up r-cran-littler (0.3.19-1) ... 691s Setting up r-cran-fs 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(1.0.5-1) ... 691s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 691s Setting up r-cran-glue (1.7.0-1) ... 691s Setting up r-cran-bit (4.0.5-1) ... 691s Setting up r-cran-xtable (1:1.8-4-2) ... 691s Setting up r-cran-cli (3.6.2-1) ... 691s Setting up gfortran (4:13.2.0-7ubuntu1) ... 691s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 691s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 691s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 691s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 691s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 691s Setting up r-cran-rprojroot (2.0.4-1) ... 691s Setting up r-cran-bit64 (4.0.5-1) ... 691s Setting up r-cran-askpass (1.2.0-1) ... 691s Setting up r-cran-fastmap (1.1.1-1) ... 691s Setting up r-cran-r.methodss3 (1.8.2-1) ... 691s Setting up r-bioc-biobase (2.62.0-1) ... 691s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 691s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 691s Setting up r-cran-utf8 (1.2.4-1) ... 691s Setting up r-cran-stringi (1.8.3-1) ... 691s Setting up r-cran-rex (1.2.1-1) ... 691s Setting up r-cran-markdown (1.12+dfsg-1) ... 691s Setting up r-cran-cpp11 (0.4.7-1) ... 691s Setting up r-bioc-limma (3.58.1+dfsg-1) ... 691s Setting up r-cran-later (1.3.2+dfsg-1) ... 691s Setting up r-cran-tinytex (0.49-1) ... 691s Setting up r-cran-knitr (1.45+dfsg-1) ... 691s Setting up g++ (4:13.2.0-7ubuntu1) ... 691s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 691s Setting up r-cran-cachem (1.0.8-1) ... 691s Setting up build-essential (12.10ubuntu1) ... 691s Setting up r-cran-tzdb (0.4.0-2) ... 691s Setting up r-cran-vctrs (0.6.5-1) ... 691s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 691s Setting up r-cran-ellipsis (0.3.2-2) ... 691s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 691s Setting up r-base-dev (4.3.2-1build1) ... 691s Setting up r-cran-stringr (1.5.1-1) ... 691s Setting up r-cran-callr (3.7.3-2) ... 691s Setting up r-cran-desc (1.4.3-1) ... 691s Setting up r-cran-xml2 (1.3.6-1) ... 691s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 691s Setting up r-cran-r.oo (1.26.0-1) ... 691s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 691s Setting up r-cran-httr (1.4.7+dfsg-1) ... 691s Setting up r-cran-hms (1.1.3-1) ... 691s Setting up r-cran-memoise (2.0.1-1) ... 691s Setting up r-cran-covr (3.6.4+dfsg-1) ... 691s Setting up r-cran-promises (1.2.1+dfsg-1) ... 691s Setting up r-cran-purrr (1.0.2-1) ... 691s Setting up r-cran-htmltools (0.5.7-1) ... 691s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 691s Setting up r-cran-pkgbuild (1.4.3-1) ... 691s Setting up r-cran-sass (0.4.8+dfsg-1) ... 691s Setting up r-cran-dplyr (1.1.4-1) ... 691s Setting up r-cran-progress (1.2.3-1) ... 691s Setting up r-cran-pkgload (1.3.4-1) ... 691s Setting up r-cran-r.utils (2.12.3-1) ... 691s Setting up r-cran-vroom (1.6.5-1) ... 691s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 691s Setting up r-cran-rematch2 (2.1.2-2build1) ... 691s Setting up r-cran-fontawesome (0.5.2-1) ... 691s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 691s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 691s Setting up r-cran-readr (2.1.5-1) ... 691s Setting up r-cran-waldo (0.5.2-1build1) ... 691s Setting up r-cran-tidyr (1.3.1-1) ... 691s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 691s Setting up r-cran-testthat (3.2.1-1) ... 691s Setting up r-bioc-geoquery (2.70.0+dfsg-1) ... 691s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 691s Processing triggers for libc-bin (2.39-0ubuntu2) ... 691s Processing triggers for man-db (2.12.0-3) ... 692s Processing triggers for install-info (7.1-3) ... 710s Reading package lists... 710s Building dependency tree... 710s Reading state information... 710s Starting pkgProblemResolver with broken count: 0 710s Starting 2 pkgProblemResolver with broken count: 0 710s Done 711s The following NEW packages will be installed: 711s autopkgtest-satdep 711s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 711s Need to get 0 B/704 B of archives. 711s After this operation, 0 B of additional disk space will be used. 711s Get:1 /tmp/autopkgtest.CR9ko4/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [704 B] 711s Selecting previously unselected package autopkgtest-satdep. 711s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 93484 files and directories currently installed.) 711s Preparing to unpack .../2-autopkgtest-satdep.deb ... 711s Unpacking autopkgtest-satdep (0) ... 711s Setting up autopkgtest-satdep (0) ... 713s (Reading database ... 93484 files and directories currently installed.) 713s Removing autopkgtest-satdep (0) ... 713s autopkgtest [02:56:48]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 713s autopkgtest [02:56:48]: test pkg-r-autopkgtest: [----------------------- 713s Test: Try to load the R library GEOquery 713s 713s R version 4.3.2 (2023-10-31) -- "Eye Holes" 713s Copyright (C) 2023 The R Foundation for Statistical Computing 713s Platform: x86_64-pc-linux-gnu (64-bit) 713s 713s R is free software and comes with ABSOLUTELY NO WARRANTY. 713s You are welcome to redistribute it under certain conditions. 713s Type 'license()' or 'licence()' for distribution details. 713s 713s R is a collaborative project with many contributors. 713s Type 'contributors()' for more information and 713s 'citation()' on how to cite R or R packages in publications. 713s 713s Type 'demo()' for some demos, 'help()' for on-line help, or 713s 'help.start()' for an HTML browser interface to help. 713s Type 'q()' to quit R. 713s 713s > library('GEOquery') 713s Loading required package: Biobase 713s Loading required package: BiocGenerics 713s 713s Attaching package: ‘BiocGenerics’ 713s 713s The following objects are masked from ‘package:stats’: 713s 713s IQR, mad, sd, var, xtabs 713s 713s The following objects are masked from ‘package:base’: 713s 713s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 713s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 713s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 713s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 713s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 713s table, tapply, union, unique, unsplit, which.max, which.min 713s 713s Welcome to Bioconductor 713s 713s Vignettes contain introductory material; view with 713s 'browseVignettes()'. To cite Bioconductor, see 713s 'citation("Biobase")', and for packages 'citation("pkgname")'. 713s 714s Setting options('download.file.method.GEOquery'='auto') 714s Setting options('GEOquery.inmemory.gpl'=FALSE) 714s > 714s > 714s Other tests are currently unsupported! 714s They will be progressively added. 715s autopkgtest [02:56:50]: test pkg-r-autopkgtest: -----------------------] 715s pkg-r-autopkgtest PASS 715s autopkgtest [02:56:50]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 715s autopkgtest [02:56:50]: @@@@@@@@@@@@@@@@@@@@ summary 715s pkg-r-autopkgtest PASS 725s Creating nova instance adt-noble-i386-r-bioc-geoquery-20240322-024455-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...