0s autopkgtest [02:42:24]: starting date and time: 2024-03-22 02:42:24+0000 0s autopkgtest [02:42:24]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [02:42:24]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jv25y9hq/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-genomicfiles --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-9.secgroup --name adt-noble-i386-r-bioc-genomicfiles-20240322-024224-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 536s autopkgtest [02:51:20]: testbed dpkg architecture: amd64 536s autopkgtest [02:51:20]: testbed apt version: 2.7.12 536s autopkgtest [02:51:20]: test architecture: i386 536s autopkgtest [02:51:20]: @@@@@@@@@@@@@@@@@@@@ test bed setup 536s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 536s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 536s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 536s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 536s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3762 kB] 537s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB] 537s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB] 537s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 537s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 537s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 537s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 537s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4236 kB] 537s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1269 kB] 537s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 537s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 537s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 537s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 540s Fetched 11.3 MB in 1s (7884 kB/s) 540s Reading package lists... 542s Reading package lists... 542s Building dependency tree... 542s Reading state information... 542s Calculating upgrade... 543s The following packages will be upgraded: 543s cloud-init fonts-ubuntu-console python3-markupsafe 543s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 543s Need to get 629 kB of archives. 543s After this operation, 11.3 kB disk space will be freed. 543s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 543s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 543s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 543s Preconfiguring packages ... 543s Fetched 629 kB in 0s (20.4 MB/s) 543s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 543s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 543s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 543s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 543s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 543s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 544s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 544s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 544s Setting up cloud-init (24.1.2-0ubuntu1) ... 545s Setting up python3-markupsafe (2.1.5-1build1) ... 545s Processing triggers for man-db (2.12.0-3) ... 546s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 546s Reading package lists... 546s Building dependency tree... 546s Reading state information... 547s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 547s sh: Attempting to set up Debian/Ubuntu apt sources automatically 547s sh: Distribution appears to be Ubuntu 548s Reading package lists... 548s Building dependency tree... 548s Reading state information... 549s eatmydata is already the newest version (131-1). 549s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 549s Reading package lists... 549s Building dependency tree... 549s Reading state information... 550s dbus is already the newest version (1.14.10-4ubuntu1). 550s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 550s Reading package lists... 550s Building dependency tree... 550s Reading state information... 550s rng-tools-debian is already the newest version (2.4). 550s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 550s Reading package lists... 550s Building dependency tree... 550s Reading state information... 551s The following packages will be REMOVED: 551s cloud-init* python3-configobj* python3-debconf* 551s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 551s After this operation, 3256 kB disk space will be freed. 551s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 551s Removing cloud-init (24.1.2-0ubuntu1) ... 551s Removing python3-configobj (5.0.8-3) ... 552s Removing python3-debconf (1.5.86) ... 552s Processing triggers for man-db (2.12.0-3) ... 552s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 552s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 552s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 552s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 553s invoke-rc.d: policy-rc.d denied execution of try-restart. 553s Reading package lists... 553s Building dependency tree... 553s Reading state information... 553s linux-generic is already the newest version (6.8.0-11.11+1). 553s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 553s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 553s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 553s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 555s Reading package lists... 555s Reading package lists... 556s Building dependency tree... 556s Reading state information... 556s Calculating upgrade... 556s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 556s Reading package lists... 556s Building dependency tree... 556s Reading state information... 557s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 557s autopkgtest [02:51:41]: rebooting testbed after setup commands that affected boot 796s autopkgtest [02:55:40]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 797s autopkgtest [02:55:41]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicfiles 798s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (dsc) [2416 B] 798s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (tar) [291 kB] 798s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (diff) [5272 B] 798s gpgv: Signature made Fri Dec 1 10:41:34 2023 UTC 798s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 798s gpgv: issuer "tillea@rki.de" 798s gpgv: Can't check signature: No public key 798s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicfiles_1.38.0+dfsg-1.dsc: no acceptable signature found 798s autopkgtest [02:55:42]: testing package r-bioc-genomicfiles version 1.38.0+dfsg-1 799s autopkgtest [02:55:43]: build not needed 802s autopkgtest [02:55:46]: test pkg-r-autopkgtest: preparing testbed 807s Note, using file '/tmp/autopkgtest.X6nyoH/1-autopkgtest-satdep.dsc' to get the build dependencies 807s Reading package lists... 808s Building dependency tree... 808s Reading state information... 808s Starting pkgProblemResolver with broken count: 0 808s Starting 2 pkgProblemResolver with broken count: 0 808s Done 808s The following NEW packages will be installed: 808s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 808s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 808s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 808s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 808s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 808s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 808s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 808s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 808s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 808s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 808s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 808s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 808s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 808s libjs-highlight.js libjs-jquery libjs-jquery-datatables 808s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 808s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 808s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 808s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 808s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 808s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 808s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 808s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 808s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 808s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 808s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 808s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 808s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 808s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 808s r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase 808s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 808s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 808s r-bioc-delayedarray r-bioc-genefilter r-bioc-genomeinfodb 808s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 808s r-bioc-genomicfiles r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 808s r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 808s r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats r-bioc-sparsearray 808s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 808s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 808s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 808s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools 808s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 808s r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 808s r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome 808s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 808s r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools 808s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 808s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 808s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 808s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 808s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 808s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 808s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 808s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 808s r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr 808s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 808s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 808s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 808s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 809s 0 upgraded, 282 newly installed, 0 to remove and 0 not upgraded. 809s Need to get 450 MB of archives. 809s After this operation, 1378 MB of additional disk space will be used. 809s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 809s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 809s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 809s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 809s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 809s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 809s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 809s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 809s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 809s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 809s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 809s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 809s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 809s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 809s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 809s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 809s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 809s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 809s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 809s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 809s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 809s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 809s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 809s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 809s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 809s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 809s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 809s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 809s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 809s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 809s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 809s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 809s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 809s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 809s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 809s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 809s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 809s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 809s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 809s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 809s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 809s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 809s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 809s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 809s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 809s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 809s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 809s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 809s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 809s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 809s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 809s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 809s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 809s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 809s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 809s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 809s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 809s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 809s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 809s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 809s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 809s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 809s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 809s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 809s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 809s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 809s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 809s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 809s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 809s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 809s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 809s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 810s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 810s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 810s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 810s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 810s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 810s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 810s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 810s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 810s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 810s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 810s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 810s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 810s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 810s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 810s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 810s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 810s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 810s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 810s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 810s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 810s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 810s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 810s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 810s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 810s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 810s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 810s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 810s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 810s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 810s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 810s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 810s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 810s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 810s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 810s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 810s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 810s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 810s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 810s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 810s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 810s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 810s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 810s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 810s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 810s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 810s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 810s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 810s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 810s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 810s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 810s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 810s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 810s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 810s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 810s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 810s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 810s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 810s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 810s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 810s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 810s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 810s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 810s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 810s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 810s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 810s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 810s Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 810s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 810s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 810s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 810s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 810s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 810s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 810s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 810s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 810s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 810s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 810s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 810s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 810s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 810s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 810s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 810s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 810s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 810s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 810s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 810s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 810s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 810s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 810s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 810s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 810s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 810s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 810s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 810s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 810s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 810s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 810s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 810s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 810s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 810s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 810s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 810s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 810s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 810s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 810s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 810s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 810s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 810s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 810s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 811s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 811s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 811s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 811s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 811s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 811s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 811s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 811s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 811s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 811s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 811s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 811s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 811s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 811s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 811s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 811s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 811s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 811s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 811s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 811s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 811s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 811s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 811s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 811s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 811s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 811s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 811s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 811s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 811s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 811s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 811s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 811s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 811s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 811s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 811s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 811s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 811s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 811s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 811s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 811s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 811s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 811s Get:224 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 811s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 811s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 811s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 811s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 811s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 811s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 811s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 811s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 811s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 811s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 811s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 811s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 811s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 811s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 811s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 811s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 811s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 811s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 811s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 811s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 811s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 811s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 811s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 811s Get:248 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 811s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 811s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 811s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 811s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 812s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 812s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 812s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 812s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 812s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 812s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 812s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 812s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 812s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 812s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 812s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 812s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 812s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 812s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 812s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 812s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 812s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 812s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 812s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 812s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 812s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 812s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 812s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 813s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 813s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genefilter amd64 1.84.0-1 [1123 kB] 813s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 813s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-variantannotation amd64 1.48.1-1 [3527 kB] 813s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfiles all 1.38.0+dfsg-1 [532 kB] 813s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-snpstats amd64 1.52.0+dfsg-1 [7242 kB] 813s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 813s Preconfiguring packages ... 814s Fetched 450 MB in 4s (105 MB/s) 814s Selecting previously unselected package libc-dev-bin. 814s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 814s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 814s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 814s Selecting previously unselected package linux-libc-dev:amd64. 814s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 814s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 814s Selecting previously unselected package libcrypt-dev:amd64. 814s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 814s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 814s Selecting previously unselected package libtirpc-dev:amd64. 814s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 814s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 814s Selecting previously unselected package libnsl-dev:amd64. 814s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 814s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 814s Selecting previously unselected package rpcsvc-proto. 814s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 814s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 814s Selecting previously unselected package libc6-dev:amd64. 814s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 814s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 814s Selecting previously unselected package libisl23:amd64. 814s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 814s Unpacking libisl23:amd64 (0.26-3) ... 814s Selecting previously unselected package libmpc3:amd64. 814s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 814s Unpacking libmpc3:amd64 (1.3.1-1) ... 814s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 814s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 814s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 815s Selecting previously unselected package cpp-13. 815s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 815s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 815s Selecting previously unselected package cpp-x86-64-linux-gnu. 815s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 815s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 815s Selecting previously unselected package cpp. 815s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 815s Unpacking cpp (4:13.2.0-7ubuntu1) ... 815s Selecting previously unselected package libcc1-0:amd64. 815s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 815s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 815s Selecting previously unselected package libgomp1:amd64. 815s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 815s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 815s Selecting previously unselected package libitm1:amd64. 815s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 815s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 815s Selecting previously unselected package libatomic1:amd64. 815s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 815s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 815s Selecting previously unselected package libasan8:amd64. 815s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 815s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 815s Selecting previously unselected package liblsan0:amd64. 815s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 815s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 815s Selecting previously unselected package libtsan2:amd64. 815s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 815s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 815s Selecting previously unselected package libubsan1:amd64. 815s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 815s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 815s Selecting previously unselected package libhwasan0:amd64. 815s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 815s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 815s Selecting previously unselected package libquadmath0:amd64. 815s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 815s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 815s Selecting previously unselected package libgcc-13-dev:amd64. 815s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 815s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 815s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 815s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 815s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 816s Selecting previously unselected package gcc-13. 816s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 816s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 816s Selecting previously unselected package gcc-x86-64-linux-gnu. 816s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 816s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 816s Selecting previously unselected package gcc. 816s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 816s Unpacking gcc (4:13.2.0-7ubuntu1) ... 816s Selecting previously unselected package libstdc++-13-dev:amd64. 816s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 816s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 816s Selecting previously unselected package g++-13-x86-64-linux-gnu. 816s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 816s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 816s Selecting previously unselected package g++-13. 816s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 816s Unpacking g++-13 (13.2.0-17ubuntu2) ... 816s Selecting previously unselected package g++-x86-64-linux-gnu. 816s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 816s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 816s Selecting previously unselected package g++. 816s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 816s Unpacking g++ (4:13.2.0-7ubuntu1) ... 816s Selecting previously unselected package build-essential. 816s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 816s Unpacking build-essential (12.10ubuntu1) ... 816s Selecting previously unselected package dctrl-tools. 816s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 816s Unpacking dctrl-tools (2.24-3build2) ... 816s Selecting previously unselected package fonts-dejavu-mono. 816s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 816s Unpacking fonts-dejavu-mono (2.37-8) ... 816s Selecting previously unselected package fonts-dejavu-core. 816s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 816s Unpacking fonts-dejavu-core (2.37-8) ... 816s Selecting previously unselected package fontconfig-config. 816s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 817s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 817s Selecting previously unselected package libfontconfig1:amd64. 817s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 817s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 817s Selecting previously unselected package fontconfig. 817s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 817s Unpacking fontconfig (2.15.0-1ubuntu1) ... 817s Selecting previously unselected package fonts-font-awesome. 817s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 817s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 817s Selecting previously unselected package fonts-glyphicons-halflings. 817s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 817s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 817s Selecting previously unselected package fonts-lmodern. 817s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 817s Unpacking fonts-lmodern (2.005-1) ... 817s Selecting previously unselected package fonts-mathjax. 817s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 817s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 817s Selecting previously unselected package libgfortran5:amd64. 817s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 817s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 817s Selecting previously unselected package libgfortran-13-dev:amd64. 817s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 817s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 817s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 817s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 817s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 818s Selecting previously unselected package gfortran-13. 818s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 818s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 818s Selecting previously unselected package gfortran-x86-64-linux-gnu. 818s Preparing to unpack .../048-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 818s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 818s Selecting previously unselected package gfortran. 818s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 818s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 818s Selecting previously unselected package icu-devtools. 818s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_amd64.deb ... 818s Unpacking icu-devtools (74.2-1ubuntu1) ... 818s Selecting previously unselected package javascript-common. 818s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 818s Unpacking javascript-common (11+nmu1) ... 818s Selecting previously unselected package libio-string-perl. 818s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 818s Unpacking libio-string-perl (1.08-4) ... 818s Selecting previously unselected package liblatex-tounicode-perl. 818s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 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previously unselected package libpangoft2-1.0-0:amd64. 823s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 823s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 823s Selecting previously unselected package libpangocairo-1.0-0:amd64. 823s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 823s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 823s Selecting previously unselected package libpaper1:amd64. 823s Preparing to unpack .../103-libpaper1_1.1.29_amd64.deb ... 823s Unpacking libpaper1:amd64 (1.1.29) ... 823s Selecting previously unselected package libpaper-utils. 823s Preparing to unpack .../104-libpaper-utils_1.1.29_amd64.deb ... 823s Unpacking libpaper-utils (1.1.29) ... 823s Selecting previously unselected package libpcre2-16-0:amd64. 823s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 823s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 823s Selecting previously unselected package 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825s Unpacking pkgconf-bin (1.8.1-2) ... 825s Selecting previously unselected package pkgconf:amd64. 825s Preparing to unpack .../139-pkgconf_1.8.1-2_amd64.deb ... 825s Unpacking pkgconf:amd64 (1.8.1-2) ... 825s Selecting previously unselected package pkg-config:amd64. 825s Preparing to unpack .../140-pkg-config_1.8.1-2_amd64.deb ... 825s Unpacking pkg-config:amd64 (1.8.1-2) ... 825s Selecting previously unselected package zip. 825s Preparing to unpack .../141-zip_3.0-13_amd64.deb ... 825s Unpacking zip (3.0-13) ... 825s Selecting previously unselected package unzip. 825s Preparing to unpack .../142-unzip_6.0-28ubuntu3_amd64.deb ... 825s Unpacking unzip (6.0-28ubuntu3) ... 825s Selecting previously unselected package xdg-utils. 825s Preparing to unpack .../143-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 825s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 825s Selecting previously unselected package r-base-core. 825s Preparing to unpack .../144-r-base-core_4.3.2-1build1_amd64.deb ... 825s Unpacking r-base-core (4.3.2-1build1) ... 826s Selecting previously unselected package liblzma-dev:amd64. 826s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_amd64.deb ... 826s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 826s Selecting previously unselected package r-base-dev. 826s Preparing to unpack .../146-r-base-dev_4.3.2-1build1_all.deb ... 826s Unpacking r-base-dev (4.3.2-1build1) ... 826s Selecting previously unselected package pkg-r-autopkgtest. 826s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 826s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 826s Selecting previously unselected package r-bioc-biocgenerics. 826s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 826s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 826s Selecting previously unselected package r-bioc-biobase. 826s Preparing to unpack .../149-r-bioc-biobase_2.62.0-1_amd64.deb ... 826s Unpacking r-bioc-biobase (2.62.0-1) ... 826s Selecting previously unselected package r-bioc-s4vectors. 826s Preparing to unpack .../150-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 826s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 826s Selecting previously unselected package r-bioc-iranges. 826s Preparing to unpack .../151-r-bioc-iranges_2.36.0-1_amd64.deb ... 826s Unpacking r-bioc-iranges (2.36.0-1) ... 826s Selecting previously unselected package r-cran-dbi. 826s Preparing to unpack .../152-r-cran-dbi_1.2.2-1_all.deb ... 826s Unpacking r-cran-dbi (1.2.2-1) ... 826s Selecting previously unselected package r-cran-bit. 826s Preparing to unpack .../153-r-cran-bit_4.0.5-1_amd64.deb ... 826s Unpacking r-cran-bit (4.0.5-1) ... 826s Selecting previously unselected package r-cran-bit64. 826s Preparing to unpack .../154-r-cran-bit64_4.0.5-1_amd64.deb ... 826s Unpacking r-cran-bit64 (4.0.5-1) ... 826s Selecting previously unselected package r-cran-rlang. 826s Preparing to unpack .../155-r-cran-rlang_1.1.3-1_amd64.deb ... 826s Unpacking r-cran-rlang (1.1.3-1) ... 826s Selecting previously unselected package r-cran-cli. 826s Preparing to unpack .../156-r-cran-cli_3.6.2-1_amd64.deb ... 826s Unpacking r-cran-cli (3.6.2-1) ... 826s Selecting previously unselected package r-cran-glue. 826s Preparing to unpack .../157-r-cran-glue_1.7.0-1_amd64.deb ... 826s Unpacking r-cran-glue (1.7.0-1) ... 826s Selecting previously unselected package r-cran-lifecycle. 826s Preparing to unpack .../158-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 826s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 826s Selecting previously unselected package r-cran-vctrs. 826s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_amd64.deb ... 826s Unpacking r-cran-vctrs (0.6.5-1) ... 826s Selecting previously unselected package r-cran-blob. 826s Preparing to unpack .../160-r-cran-blob_1.2.4-1_all.deb ... 826s Unpacking r-cran-blob (1.2.4-1) ... 826s Selecting previously unselected package r-cran-fastmap. 826s Preparing to unpack .../161-r-cran-fastmap_1.1.1-1_amd64.deb ... 826s Unpacking r-cran-fastmap (1.1.1-1) ... 826s Selecting previously unselected package r-cran-cachem. 826s Preparing to unpack .../162-r-cran-cachem_1.0.8-1_amd64.deb ... 826s Unpacking r-cran-cachem (1.0.8-1) ... 826s Selecting previously unselected package r-cran-memoise. 826s Preparing to unpack .../163-r-cran-memoise_2.0.1-1_all.deb ... 826s Unpacking r-cran-memoise (2.0.1-1) ... 826s Selecting previously unselected package r-cran-pkgconfig. 826s Preparing to unpack .../164-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 826s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 827s Selecting previously unselected package r-cran-plogr. 827s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build1_all.deb ... 827s Unpacking r-cran-plogr (0.2.0-3build1) ... 827s Selecting previously unselected package r-cran-cpp11. 827s Preparing to unpack .../166-r-cran-cpp11_0.4.7-1_all.deb ... 827s Unpacking r-cran-cpp11 (0.4.7-1) ... 827s Selecting previously unselected package r-cran-rsqlite. 827s Preparing to unpack .../167-r-cran-rsqlite_2.3.4-1_amd64.deb ... 827s Unpacking r-cran-rsqlite (2.3.4-1) ... 827s Selecting previously unselected package r-cran-curl. 827s Preparing to unpack .../168-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 827s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 827s Selecting previously unselected package r-cran-jsonlite. 827s Preparing to unpack .../169-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 827s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 827s Selecting previously unselected package r-cran-mime. 827s Preparing to unpack .../170-r-cran-mime_0.12-1_amd64.deb ... 827s Unpacking r-cran-mime (0.12-1) ... 827s Selecting previously unselected package r-cran-sys. 827s Preparing to unpack .../171-r-cran-sys_3.4.2-1_amd64.deb ... 827s Unpacking r-cran-sys (3.4.2-1) ... 827s Selecting previously unselected package r-cran-askpass. 827s Preparing to unpack .../172-r-cran-askpass_1.2.0-1_amd64.deb ... 827s Unpacking r-cran-askpass (1.2.0-1) ... 827s Selecting previously unselected package r-cran-openssl. 827s Preparing to unpack .../173-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 827s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 827s Selecting previously unselected package r-cran-r6. 827s Preparing to unpack .../174-r-cran-r6_2.5.1-1_all.deb ... 827s Unpacking r-cran-r6 (2.5.1-1) ... 827s Selecting previously unselected package r-cran-httr. 827s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ... 827s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 827s Selecting previously unselected package r-cran-png. 827s Preparing to unpack .../176-r-cran-png_0.1-8-1_amd64.deb ... 827s Unpacking r-cran-png (0.1-8-1) ... 827s Selecting previously unselected package r-bioc-zlibbioc. 827s Preparing to unpack .../177-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 827s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 827s Selecting previously unselected package r-bioc-xvector. 827s Preparing to unpack .../178-r-bioc-xvector_0.42.0-1_amd64.deb ... 827s Unpacking r-bioc-xvector (0.42.0-1) ... 827s Selecting previously unselected package r-cran-bitops. 827s Preparing to unpack .../179-r-cran-bitops_1.0-7-1_amd64.deb ... 827s Unpacking r-cran-bitops (1.0-7-1) ... 827s Selecting previously unselected package r-cran-rcurl. 827s Preparing to unpack .../180-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 827s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 827s Selecting previously unselected package r-bioc-genomeinfodbdata. 827s Preparing to unpack .../181-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 827s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 827s Selecting previously unselected package r-bioc-genomeinfodb. 827s Preparing to unpack .../182-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 827s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 827s Selecting previously unselected package r-cran-crayon. 827s Preparing to unpack .../183-r-cran-crayon_1.5.2-1_all.deb ... 827s Unpacking r-cran-crayon (1.5.2-1) ... 827s Selecting previously unselected package r-bioc-biostrings. 827s Preparing to unpack .../184-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 827s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 828s Selecting previously unselected package r-bioc-keggrest. 828s Preparing to unpack .../185-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 828s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 828s Selecting previously unselected package r-bioc-annotationdbi. 828s Preparing to unpack .../186-r-bioc-annotationdbi_1.64.1-1_all.deb ... 828s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 828s Selecting previously unselected package r-cran-xml. 828s Preparing to unpack .../187-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 828s Unpacking r-cran-xml (3.99-0.16.1-1) ... 828s Selecting previously unselected package r-cran-xtable. 828s Preparing to unpack .../188-r-cran-xtable_1%3a1.8-4-2_all.deb ... 828s Unpacking r-cran-xtable (1:1.8-4-2) ... 828s Selecting previously unselected package r-bioc-annotate. 828s Preparing to unpack .../189-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 828s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 828s Selecting previously unselected package r-cran-generics. 828s Preparing to unpack .../190-r-cran-generics_0.1.3-1_all.deb ... 828s Unpacking r-cran-generics (0.1.3-1) ... 828s Selecting previously unselected package r-cran-magrittr. 828s Preparing to unpack .../191-r-cran-magrittr_2.0.3-1_amd64.deb ... 828s Unpacking r-cran-magrittr (2.0.3-1) ... 828s Selecting previously unselected package r-cran-fansi. 828s Preparing to unpack .../192-r-cran-fansi_1.0.5-1_amd64.deb ... 828s Unpacking r-cran-fansi (1.0.5-1) ... 828s Selecting previously unselected package r-cran-utf8. 828s Preparing to unpack .../193-r-cran-utf8_1.2.4-1_amd64.deb ... 828s Unpacking r-cran-utf8 (1.2.4-1) ... 828s Selecting previously unselected package r-cran-pillar. 828s Preparing to unpack .../194-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 828s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 828s Selecting previously unselected package r-cran-tibble. 828s Preparing to unpack .../195-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 828s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 828s Selecting previously unselected package r-cran-withr. 828s Preparing to unpack .../196-r-cran-withr_2.5.0-1_all.deb ... 828s Unpacking r-cran-withr (2.5.0-1) ... 828s Selecting previously unselected package r-cran-tidyselect. 828s Preparing to unpack .../197-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 828s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 828s Selecting previously unselected package r-cran-dplyr. 828s Preparing to unpack .../198-r-cran-dplyr_1.1.4-1_amd64.deb ... 828s Unpacking r-cran-dplyr (1.1.4-1) ... 828s Selecting previously unselected package r-cran-purrr. 828s Preparing to unpack .../199-r-cran-purrr_1.0.2-1_amd64.deb ... 828s Unpacking r-cran-purrr (1.0.2-1) ... 828s Selecting previously unselected package r-cran-stringi. 828s Preparing to unpack .../200-r-cran-stringi_1.8.3-1_amd64.deb ... 828s Unpacking r-cran-stringi (1.8.3-1) ... 828s Selecting previously unselected package r-cran-stringr. 828s Preparing to unpack .../201-r-cran-stringr_1.5.1-1_all.deb ... 828s Unpacking r-cran-stringr (1.5.1-1) ... 828s Selecting previously unselected package r-cran-tidyr. 828s Preparing to unpack .../202-r-cran-tidyr_1.3.1-1_amd64.deb ... 828s Unpacking r-cran-tidyr (1.3.1-1) ... 828s Selecting previously unselected package r-cran-dbplyr. 828s Preparing to unpack .../203-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 828s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 829s Selecting previously unselected package r-cran-filelock. 829s Preparing to unpack .../204-r-cran-filelock_1.0.3-1_amd64.deb ... 829s Unpacking r-cran-filelock (1.0.3-1) ... 829s Selecting previously unselected package r-bioc-biocfilecache. 829s Preparing to unpack .../205-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 829s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 829s Selecting previously unselected package r-bioc-biocio. 829s Preparing to unpack .../206-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 829s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 829s Selecting previously unselected package r-cran-formatr. 829s Preparing to unpack .../207-r-cran-formatr_1.14-1_all.deb ... 829s Unpacking r-cran-formatr (1.14-1) ... 829s Selecting previously unselected package r-cran-lambda.r. 829s Preparing to unpack .../208-r-cran-lambda.r_1.2.4-2build1_all.deb ... 829s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 829s Selecting previously unselected package r-cran-futile.options. 829s Preparing to unpack .../209-r-cran-futile.options_1.0.1-3build1_all.deb ... 829s Unpacking r-cran-futile.options (1.0.1-3build1) ... 829s Selecting previously unselected package r-cran-futile.logger. 829s Preparing to unpack .../210-r-cran-futile.logger_1.4.3-4build1_all.deb ... 829s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 829s Selecting previously unselected package r-cran-snow. 829s Preparing to unpack .../211-r-cran-snow_1%3a0.4.4-2_all.deb ... 829s Unpacking r-cran-snow (1:0.4.4-2) ... 829s Selecting previously unselected package r-cran-codetools. 829s Preparing to unpack .../212-r-cran-codetools_0.2-19-1_all.deb ... 829s Unpacking r-cran-codetools (0.2-19-1) ... 829s Selecting previously unselected package r-cran-bh. 829s Preparing to unpack .../213-r-cran-bh_1.84.0-1_all.deb ... 829s Unpacking r-cran-bh (1.84.0-1) ... 829s Selecting previously unselected package r-bioc-biocparallel. 829s Preparing to unpack .../214-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 829s Unpacking r-bioc-biocparallel (1.36.0-1) ... 829s Selecting previously unselected package r-cran-base64enc. 829s Preparing to unpack .../215-r-cran-base64enc_0.1-3-3_amd64.deb ... 829s Unpacking r-cran-base64enc (0.1-3-3) ... 829s Selecting previously unselected package r-cran-digest. 829s Preparing to unpack .../216-r-cran-digest_0.6.34-1_amd64.deb ... 829s Unpacking r-cran-digest (0.6.34-1) ... 829s Selecting previously unselected package r-cran-ellipsis. 829s Preparing to unpack .../217-r-cran-ellipsis_0.3.2-2_amd64.deb ... 829s Unpacking r-cran-ellipsis (0.3.2-2) ... 829s Selecting previously unselected package r-cran-htmltools. 829s Preparing to unpack .../218-r-cran-htmltools_0.5.7-1_amd64.deb ... 829s Unpacking r-cran-htmltools (0.5.7-1) ... 829s Selecting previously unselected package r-cran-evaluate. 829s Preparing to unpack .../219-r-cran-evaluate_0.23-1_all.deb ... 829s Unpacking r-cran-evaluate (0.23-1) ... 829s Selecting previously unselected package r-cran-xfun. 829s Preparing to unpack .../220-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 829s Unpacking r-cran-xfun (0.41+dfsg-1) ... 829s Selecting previously unselected package r-cran-highr. 829s Preparing to unpack .../221-r-cran-highr_0.10+dfsg-1_all.deb ... 829s Unpacking r-cran-highr (0.10+dfsg-1) ... 829s Selecting previously unselected package r-cran-yaml. 829s Preparing to unpack .../222-r-cran-yaml_2.3.8-1_amd64.deb ... 829s Unpacking r-cran-yaml (2.3.8-1) ... 829s Selecting previously unselected package libjs-mathjax. 829s Preparing to unpack .../223-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 829s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 830s Selecting previously unselected package r-cran-knitr. 830s Preparing to unpack .../224-r-cran-knitr_1.45+dfsg-1_all.deb ... 830s Unpacking r-cran-knitr (1.45+dfsg-1) ... 830s Selecting previously unselected package r-cran-jquerylib. 830s Preparing to unpack .../225-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 830s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 830s Selecting previously unselected package r-cran-fs. 830s Preparing to unpack .../226-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 830s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 830s Selecting previously unselected package r-cran-rappdirs. 830s Preparing to unpack .../227-r-cran-rappdirs_0.3.3-1_amd64.deb ... 830s Unpacking r-cran-rappdirs (0.3.3-1) ... 830s Selecting previously unselected package r-cran-sass. 830s Preparing to unpack .../228-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 830s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 830s Selecting previously unselected package r-cran-bslib. 830s Preparing to unpack .../229-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 830s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 830s Selecting previously unselected package r-cran-fontawesome. 830s Preparing to unpack .../230-r-cran-fontawesome_0.5.2-1_all.deb ... 830s Unpacking r-cran-fontawesome (0.5.2-1) ... 830s Selecting previously unselected package r-cran-tinytex. 830s Preparing to unpack .../231-r-cran-tinytex_0.49-1_all.deb ... 830s Unpacking r-cran-tinytex (0.49-1) ... 831s Selecting previously unselected package libjs-modernizr. 831s Preparing to unpack .../232-libjs-modernizr_2.6.2+ds1-5_all.deb ... 831s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 831s Selecting previously unselected package r-cran-littler. 831s Preparing to unpack .../233-r-cran-littler_0.3.19-1_amd64.deb ... 831s Unpacking r-cran-littler (0.3.19-1) ... 831s Selecting previously unselected package r-cran-pkgkitten. 831s Preparing to unpack .../234-r-cran-pkgkitten_0.2.3-1_all.deb ... 831s Unpacking r-cran-pkgkitten (0.2.3-1) ... 831s Selecting previously unselected package r-cran-rcpp. 831s Preparing to unpack .../235-r-cran-rcpp_1.0.12-1_amd64.deb ... 831s Unpacking r-cran-rcpp (1.0.12-1) ... 831s Selecting previously unselected package r-cran-later. 831s Preparing to unpack .../236-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 831s Unpacking r-cran-later (1.3.2+dfsg-1) ... 831s Selecting previously unselected package r-cran-promises. 831s Preparing to unpack .../237-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 831s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 831s Selecting previously unselected package r-cran-httpuv. 831s Preparing to unpack .../238-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 831s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 831s Selecting previously unselected package r-cran-sourcetools. 831s Preparing to unpack .../239-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 831s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 831s Selecting previously unselected package r-cran-commonmark. 831s Preparing to unpack .../240-r-cran-commonmark_1.9.1-1_amd64.deb ... 831s Unpacking r-cran-commonmark (1.9.1-1) ... 831s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 831s Preparing to unpack .../241-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 831s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 831s Selecting previously unselected package r-cran-shiny. 831s Preparing to unpack .../242-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 831s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 831s Selecting previously unselected package r-cran-rmarkdown. 831s Preparing to unpack .../243-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 831s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 831s Selecting previously unselected package r-cran-bookdown. 831s Preparing to unpack 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size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 845s Setting up r-cran-magrittr (2.0.3-1) ... 845s Setting up r-cran-rappdirs (0.3.3-1) ... 845s Setting up r-cran-filelock (1.0.3-1) ... 845s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 845s Setting up r-cran-littler (0.3.19-1) ... 845s Setting up r-cran-bh (1.84.0-1) ... 845s Setting up r-cran-fs (1.6.3+dfsg-1) ... 845s Setting up r-cran-rcpp (1.0.12-1) ... 845s Setting up r-cran-curl (5.2.0+dfsg-1) ... 845s Setting up r-cran-codetools (0.2-19-1) ... 845s Setting up g++-13 (13.2.0-17ubuntu2) ... 845s Setting up r-bioc-biocgenerics (0.48.1-2) ... 845s Setting up r-cran-rlang (1.1.3-1) ... 845s Setting up r-cran-matrixstats (1.2.0-1) ... 845s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 845s Setting up r-cran-xfun (0.41+dfsg-1) ... 845s Setting up r-cran-sys (3.4.2-1) ... 845s Setting up r-cran-plogr (0.2.0-3build1) ... 845s Setting up r-cran-withr (2.5.0-1) ... 845s Setting up r-cran-mime (0.12-1) ... 845s Setting up r-cran-generics (0.1.3-1) ... 845s Setting up r-cran-base64enc (0.1-3-3) ... 845s Setting up r-cran-abind (1.4-5-2) ... 845s Setting up r-cran-digest (0.6.34-1) ... 845s Setting up r-cran-yaml (2.3.8-1) ... 845s Setting up r-cran-lambda.r (1.2.4-2build1) ... 845s Setting up r-cran-evaluate (0.23-1) ... 845s Setting up r-cran-dbi (1.2.2-1) ... 845s Setting up r-cran-highr (0.10+dfsg-1) ... 845s Setting up r-cran-prettyunits (1.2.0-1) ... 845s Setting up r-cran-fansi (1.0.5-1) ... 845s Setting up r-cran-snow (1:0.4.4-2) ... 845s Setting up r-cran-glue (1.7.0-1) ... 845s Setting up r-cran-bit (4.0.5-1) ... 845s Setting up r-cran-xtable (1:1.8-4-2) ... 845s Setting up r-cran-cli (3.6.2-1) ... 845s Setting up gfortran (4:13.2.0-7ubuntu1) ... 845s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 845s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 845s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 845s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 845s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 845s Setting up r-cran-bitops (1.0-7-1) ... 845s Setting up r-cran-bit64 (4.0.5-1) ... 845s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 845s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 845s Setting up r-cran-askpass (1.2.0-1) ... 845s Setting up r-cran-fastmap (1.1.1-1) ... 845s Setting up r-cran-png (0.1-8-1) ... 845s Setting up r-bioc-biobase (2.62.0-1) ... 845s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 845s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 845s Setting up r-cran-utf8 (1.2.4-1) ... 845s Setting up r-cran-stringi (1.8.3-1) ... 845s Setting up texlive-latex-base (2023.20240207-1) ... 845s Setting up r-cran-cpp11 (0.4.7-1) ... 845s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 845s Setting up r-cran-runit (0.4.33-1) ... 845s Setting up r-cran-futile.logger (1.4.3-4build1) ... 845s Setting up r-cran-later (1.3.2+dfsg-1) ... 845s Setting up r-cran-matrix (1.6-5-1) ... 845s Setting up r-cran-tinytex (0.49-1) ... 845s Setting up r-cran-knitr (1.45+dfsg-1) ... 845s Setting up g++ (4:13.2.0-7ubuntu1) ... 845s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 845s Setting up r-cran-cachem (1.0.8-1) ... 845s Setting up build-essential (12.10ubuntu1) ... 845s Setting up r-bioc-iranges (2.36.0-1) ... 845s Setting up r-cran-rjson (0.2.21-1) ... 845s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 845s Setting up r-cran-restfulr (0.0.15-1) ... 845s Setting up r-cran-vctrs (0.6.5-1) ... 845s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 845s Setting up r-cran-ellipsis (0.3.2-2) ... 845s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 845s Setting up r-base-dev (4.3.2-1build1) ... 845s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 845s Setting up r-cran-stringr (1.5.1-1) ... 845s Setting up r-bioc-biocparallel (1.36.0-1) ... 845s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 845s Setting up r-cran-xml2 (1.3.6-1) ... 845s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 845s Setting up r-cran-survival (3.5-8-1) ... 845s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 845s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 845s Setting up r-bioc-snpstats (1.52.0+dfsg-1) ... 845s Setting up texlive-bibtex-extra (2023.20240207-1) ... 845s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 845s Setting up r-cran-httr (1.4.7+dfsg-1) ... 845s Setting up r-cran-hms (1.1.3-1) ... 845s Setting up r-cran-memoise (2.0.1-1) ... 845s Setting up r-cran-promises (1.2.1+dfsg-1) ... 845s Setting up r-cran-purrr (1.0.2-1) ... 845s Setting up r-cran-blob (1.2.4-1) ... 845s Setting up r-cran-htmltools (0.5.7-1) ... 845s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 845s Setting up r-bioc-xvector (0.42.0-1) ... 845s Setting up r-cran-sass (0.4.8+dfsg-1) ... 845s Setting up r-cran-dplyr (1.1.4-1) ... 845s Setting up r-cran-rsqlite (2.3.4-1) ... 845s Setting up r-cran-progress (1.2.3-1) ... 845s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 845s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 845s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 845s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 845s Setting up r-cran-fontawesome (0.5.2-1) ... 845s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 845s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 845s Setting up r-cran-tidyr (1.3.1-1) ... 845s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 845s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 845s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 845s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 845s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 845s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 845s Setting up r-bioc-annotationdbi (1.64.1-1) ... 845s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 845s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 845s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 845s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 845s Setting up r-bioc-genefilter (1.84.0-1) ... 845s Setting up r-bioc-genomicalignments (1.38.2-1) ... 845s Setting up r-cran-bookdown (0.37+dfsg-1) ... 845s Setting up r-bioc-rtracklayer (1.62.0-1) ... 845s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 845s Setting up r-bioc-bsgenome (1.70.2-1) ... 845s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 845s Setting up r-bioc-variantannotation (1.48.1-1) ... 845s Setting up r-bioc-genomicfiles (1.38.0+dfsg-1) ... 845s Processing triggers for man-db (2.12.0-3) ... 846s Processing triggers for install-info (7.1-3) ... 846s Processing triggers for libc-bin (2.39-0ubuntu2) ... 846s Processing triggers for tex-common (6.18) ... 847s Running updmap-sys. This may take some time... done. 847s Running mktexlsr /var/lib/texmf ... done. 847s Building format(s) --all. 880s This may take some time... done. 894s Reading package lists... 895s Building dependency tree... 895s Reading state information... 895s Starting pkgProblemResolver with broken count: 0 895s Starting 2 pkgProblemResolver with broken count: 0 895s Done 895s The following NEW packages will be installed: 895s autopkgtest-satdep 895s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 895s Need to get 0 B/696 B of archives. 895s After this operation, 0 B of additional disk space will be used. 895s Get:1 /tmp/autopkgtest.X6nyoH/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 896s Selecting previously unselected package autopkgtest-satdep. 896s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121381 files and directories currently installed.) 896s Preparing to unpack .../2-autopkgtest-satdep.deb ... 896s Unpacking autopkgtest-satdep (0) ... 896s Setting up autopkgtest-satdep (0) ... 897s (Reading database ... 121381 files and directories currently installed.) 897s Removing autopkgtest-satdep (0) ... 898s autopkgtest [02:57:22]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 898s autopkgtest [02:57:22]: test pkg-r-autopkgtest: [----------------------- 898s Test: Try to load the R library GenomicFiles 898s 898s R version 4.3.2 (2023-10-31) -- "Eye Holes" 898s Copyright (C) 2023 The R Foundation for Statistical Computing 898s Platform: x86_64-pc-linux-gnu (64-bit) 898s 898s R is free software and comes with ABSOLUTELY NO WARRANTY. 898s You are welcome to redistribute it under certain conditions. 898s Type 'license()' or 'licence()' for distribution details. 898s 898s R is a collaborative project with many contributors. 898s Type 'contributors()' for more information and 898s 'citation()' on how to cite R or R packages in publications. 898s 898s Type 'demo()' for some demos, 'help()' for on-line help, or 898s 'help.start()' for an HTML browser interface to help. 898s Type 'q()' to quit R. 898s 898s > library('GenomicFiles') 898s Loading required package: BiocGenerics 898s 898s Attaching package: ‘BiocGenerics’ 898s 898s The following objects are masked from ‘package:stats’: 898s 898s IQR, mad, sd, var, xtabs 898s 898s The following objects are masked from ‘package:base’: 898s 898s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 898s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 898s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 898s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 898s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 898s table, tapply, union, unique, unsplit, which.max, which.min 898s 898s Loading required package: MatrixGenerics 898s Loading required package: matrixStats 898s 898s Attaching package: ‘MatrixGenerics’ 898s 898s The following objects are masked from ‘package:matrixStats’: 898s 898s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 898s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 898s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 898s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 898s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 898s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 898s colWeightedMeans, colWeightedMedians, colWeightedSds, 898s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 898s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 898s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 898s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 898s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 898s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 898s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 898s rowWeightedSds, rowWeightedVars 898s 898s Loading required package: GenomicRanges 898s Loading required package: stats4 898s Loading required package: S4Vectors 899s 899s Attaching package: ‘S4Vectors’ 899s 899s The following object is masked from ‘package:utils’: 899s 899s findMatches 899s 899s The following objects are masked from ‘package:base’: 899s 899s expand.grid, I, unname 899s 899s Loading required package: IRanges 900s Loading required package: GenomeInfoDb 900s Loading required package: SummarizedExperiment 900s Loading required package: Biobase 901s Welcome to Bioconductor 901s 901s Vignettes contain introductory material; view with 901s 'browseVignettes()'. To cite Bioconductor, see 901s 'citation("Biobase")', and for packages 'citation("pkgname")'. 901s 901s 901s Attaching package: ‘Biobase’ 901s 901s The following object is masked from ‘package:MatrixGenerics’: 901s 901s rowMedians 901s 901s The following objects are masked from ‘package:matrixStats’: 901s 901s anyMissing, rowMedians 901s 905s Loading required package: BiocParallel 905s Loading required package: Rsamtools 905s Loading required package: Biostrings 905s Loading required package: XVector 905s 905s Attaching package: ‘Biostrings’ 905s 905s The following object is masked from ‘package:base’: 905s 905s strsplit 905s 905s Loading required package: rtracklayer 911s > 911s > 911s autopkgtest [02:57:35]: test pkg-r-autopkgtest: -----------------------] 911s Other tests are currently unsupported! 911s They will be progressively added. 911s pkg-r-autopkgtest PASS 911s autopkgtest [02:57:35]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 911s autopkgtest [02:57:35]: @@@@@@@@@@@@@@@@@@@@ summary 911s pkg-r-autopkgtest PASS 922s Creating nova instance adt-noble-i386-r-bioc-genomicfiles-20240322-024224-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...