0s autopkgtest [13:00:39]: starting date and time: 2024-03-21 13:00:39+0000 0s autopkgtest [13:00:39]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [13:00:39]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.vrhibl3x/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-bioc-rsamtools --apt-upgrade r-bioc-genomicfiles --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-87.secgroup --name adt-noble-i386-r-bioc-genomicfiles-20240321-130039-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 612s Creating nova instance adt-noble-i386-r-bioc-genomicfiles-20240321-130039-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240320.img (UUID 3219a3f4-90ea-47d9-8dfb-3912f2ae9f95)... 612s nova boot failed (attempt #1): 612s DEBUG (extension:189) found extension EntryPoint.parse('v1password = swiftclient.authv1:PasswordLoader') 612s DEBUG (extension:189) found extension EntryPoint.parse('noauth = cinderclient.contrib.noauth:CinderNoAuthLoader') 612s DEBUG (extension:189) found extension EntryPoint.parse('admin_token = keystoneauth1.loading._plugins.admin_token:AdminToken') 612s DEBUG (extension:189) found extension EntryPoint.parse('none = keystoneauth1.loading._plugins.noauth:NoAuth') 612s DEBUG (extension:189) found extension EntryPoint.parse('password = keystoneauth1.loading._plugins.identity.generic:Password') 612s DEBUG (extension:189) found extension EntryPoint.parse('token = keystoneauth1.loading._plugins.identity.generic:Token') 612s DEBUG (extension:189) found extension EntryPoint.parse('v2password = keystoneauth1.loading._plugins.identity.v2:Password') 612s DEBUG (extension:189) found extension EntryPoint.parse('v2token = keystoneauth1.loading._plugins.identity.v2:Token') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3adfspassword = keystoneauth1.extras._saml2._loading:ADFSPassword') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3applicationcredential = keystoneauth1.loading._plugins.identity.v3:ApplicationCredential') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3fedkerb = keystoneauth1.extras.kerberos._loading:MappedKerberos') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3kerberos = keystoneauth1.extras.kerberos._loading:Kerberos') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3multifactor = keystoneauth1.loading._plugins.identity.v3:MultiFactor') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3oauth1 = keystoneauth1.extras.oauth1._loading:V3OAuth1') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcaccesstoken = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAccessToken') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcauthcode = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAuthorizationCode') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcclientcredentials = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectClientCredentials') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcpassword = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectPassword') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3password = keystoneauth1.loading._plugins.identity.v3:Password') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3samlpassword = keystoneauth1.extras._saml2._loading:Saml2Password') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3token = keystoneauth1.loading._plugins.identity.v3:Token') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3tokenlessauth = keystoneauth1.loading._plugins.identity.v3:TokenlessAuth') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3totp = keystoneauth1.loading._plugins.identity.v3:TOTP') 612s DEBUG (session:517) REQ: curl -g -i -X GET https://keystone.ps5.canonical.com:5000/v3 -H "Accept: application/json" -H "User-Agent: nova keystoneauth1/4.0.0 python-requests/2.22.0 CPython/3.8.10" 612s DEBUG (connectionpool:962) Starting new HTTPS connection (1): keystone.ps5.canonical.com:5000 612s DEBUG (connectionpool:429) https://keystone.ps5.canonical.com:5000 "GET /v3 HTTP/1.1" 200 267 612s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 267 Content-Type: application/json Date: Thu, 21 Mar 2024 13:05:09 GMT Keep-Alive: timeout=5, max=100 Server: Apache/2.4.41 (Ubuntu) Vary: X-Auth-Token x-openstack-request-id: req-cf3dbd9f-56e9-4843-b3aa-64166ce7b0f6 612s DEBUG (session:580) RESP BODY: {"version": {"id": "v3.14", "status": "stable", "updated": "2020-04-07T00:00:00Z", "links": [{"rel": "self", "href": "https://keystone.ps5.canonical.com:5000/v3/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.identity-v3+json"}]}} 612s DEBUG (session:946) GET call to https://keystone.ps5.canonical.com:5000/v3 used request id req-cf3dbd9f-56e9-4843-b3aa-64166ce7b0f6 612s DEBUG (base:182) Making authentication request to https://keystone.ps5.canonical.com:5000/v3/auth/tokens 612s DEBUG (connectionpool:429) https://keystone.ps5.canonical.com:5000 "POST /v3/auth/tokens HTTP/1.1" 201 11701 612s DEBUG (base:187) {"token": {"methods": ["password"], "user": {"domain": {"id": "default", "name": "Default"}, "id": "c01f0e5a065246f2a090a7d191029fce", "name": "prod-proposed-migration", "password_expires_at": null}, "audit_ids": ["J2sESnbLRYuWg9Tr9nuM1w"], "expires_at": "2024-03-22T13:05:09.000000Z", "issued_at": "2024-03-21T13:05:09.000000Z", "project": {"domain": {"id": "default", "name": "Default"}, "id": "a77cf7d04cc348e3b9aad5180306c3dd", "name": "prod-proposed-migration_project"}, "is_domain": false, "roles": [{"id": "3c78c6ccb7a24b77a91e24246ff0896e", "name": "member"}, {"id": "f84069c3d10e4eebaea55b7499d804ac", "name": "reader"}], "is_admin_project": false, "catalog": [{"endpoints": [{"id": "381f92a8b48942dfbfdf1f2569df8e5a", "interface": "internal", "region_id": "prodstack5", "url": "https://heat-internal.ps5.canonical.com:8004/v1/a77cf7d04cc348e3b9aad5180306c3dd", "region": "prodstack5"}, {"id": "57c801b8efae427bb38d127888ec39c7", "interface": "admin", "region_id": "prodstack5", "url": "https://heat-admin.ps5.canonical.com:8004/v1/a77cf7d04cc348e3b9aad5180306c3dd", "region": "prodstack5"}, {"id": "edae1b88012c46b892b6ca4d670e78e6", "interface": "public", "region_id": "prodstack5", "url": "https://heat.ps5.canonical.com:8004/v1/a77cf7d04cc348e3b9aad5180306c3dd", "region": "prodstack5"}], "id": "0c32215c880f45ebb55fa813d2c01a05", "type": "orchestration", "name": "heat"}, {"endpoints": [{"id": "3f327f9d25044e4dae537bc2aa694117", "interface": "internal", "region_id": "prodstack5", "url": "https://cinder-internal.ps5.canonical.com:8776/v3/a77cf7d04cc348e3b9aad5180306c3dd", "region": "prodstack5"}, {"id": "be9b6d7a63fd4c2cbec3d3945d67da23", "interface": "admin", "region_id": "prodstack5", "url": "https://cinder-admin.ps5.canonical.com:8776/v3/a77cf7d04cc348e3b9aad5180306c3dd", "region": "prodstack5"}, {"id": "f79fd684be71400084dd1871bf1ceed8", "interface": "public", "region_id": "prodstack5", "url": "https://cinder.ps5.canonical.com:8776/v3/a77cf7d04cc348e3b9aad5180306c3dd", "region": "prodstack5"}], "id": "0c799399b02f4d468844fac80cf78763", "type": "volumev3", "name": "cinderv3"}, {"endpoints": [{"id": "32d4ab1d59314991b616622f958c55a3", "interface": "admin", "region_id": "prodstack5", "url": "https://glance-admin.ps5.canonical.com:9292", "region": "prodstack5"}, {"id": "c0023fe925774a949a611bafa775b1dd", "interface": "public", "region_id": "prodstack5", "url": "https://glance.ps5.canonical.com:9292", "region": "prodstack5"}, {"id": "efdeffa94ac54e8485318b673fe00a62", "interface": "internal", "region_id": "prodstack5", "url": "https://glance-internal.ps5.canonical.com:9292", "region": "prodstack5"}], "id": "12a1596e978446df9f49adedf0281be4", "type": "image", "name": "glance"}, {"endpoints": [{"id": "35a1da84ece8457796097bbb42a7c48b", "interface": "public", "region_id": "prodstack5", "url": "https://neutron.ps5.canonical.com:9696", "region": "prodstack5"}, {"id": "76f58d33070d4716b6ace61da0cf5fab", "interface": "internal", "region_id": "prodstack5", "url": "https://neutron-internal.ps5.canonical.com:9696", "region": "prodstack5"}, {"id": "fa63ae5cd82345128c1e06d795bd5c5c", "interface": "admin", "region_id": "prodstack5", "url": "https://neutron-admin.ps5.canonical.com:9696", "region": "prodstack5"}], "id": "166ad5679b9e4430b00903524f1aa2e2", "type": "network", "name": "neutron"}, {"endpoints": [{"id": "51b3369f6bcb44d39d927fed38dfcb1d", "interface": "public", "region_id": "prodstack5", "url": "https://nova.ps5.canonical.com:8774/v2.1", "region": "prodstack5"}, {"id": "bde75440fd044085a599523fa768b3e0", "interface": "internal", "region_id": "prodstack5", "url": "https://nova-internal.ps5.canonical.com:8774/v2.1", "region": "prodstack5"}, {"id": "ebb570ffacb64d188008169beff10c7d", "interface": "admin", "region_id": "prodstack5", "url": "https://nova-admin.ps5.canonical.com:8774/v2.1", "region": "prodstack5"}], "id": "239a7e347ea145ba8900922319abfe0c", "type": "compute", "name": "nova"}, {"endpoints": [{"id": "7bc0cff06df9462eadc8f751b17b147b", "interface": "internal", "region_id": "prodstack5", "url": "https://gnocchi-internal.ps5.canonical.com:8041", "region": "prodstack5"}, {"id": "9eccd9a5774b450685f5be93e03eb579", "interface": "admin", "region_id": "prodstack5", "url": "https://gnocchi-admin.ps5.canonical.com:8041", "region": "prodstack5"}, {"id": "b116265ff15d46449f063572137c127e", "interface": "public", "region_id": "prodstack5", "url": "https://gnocchi.ps5.canonical.com:8041", "region": "prodstack5"}], "id": "3094700472a043d9a9095409791d1ebd", "type": "metric", "name": "gnocchi"}, {"endpoints": [{"id": "8ee6d1af15c5497393f87dadb8d88dc0", "interface": "public", "region_id": "prodstack5", "url": "https://octavia.ps5.canonical.com:9876", "region": "prodstack5"}, {"id": "d1ebffaac581458fbfe417de21f6179e", "interface": "internal", "region_id": "prodstack5", "url": "https://octavia-internal.ps5.canonical.com:9876", "region": "prodstack5"}, {"id": "fe6854cc50864b7e8884c666d0c49525", "interface": "admin", "region_id": "prodstack5", "url": "https://octavia-admin.ps5.canonical.com:9876", "region": "prodstack5"}], "id": "31368cb36db84561bd587221566417fe", "type": "load-balancer", "name": "octavia"}, {"endpoints": [{"id": "04c6279eb3274a8b9558481fcb84f91f", "interface": "admin", "region_id": "prodstack5", "url": "https://radosgw-admin.ps5.canonical.com:443/", "region": "prodstack5"}, {"id": "4078713c5b4e42af9af5181b0e370195", "interface": "public", "region_id": "prodstack5", "url": "https://radosgw.ps5.canonical.com:443/", "region": "prodstack5"}, {"id": "539afbfe83284d1794337ab29534d146", "interface": "internal", "region_id": "prodstack5", "url": "https://radosgw-internal.ps5.canonical.com:443/", "region": "prodstack5"}], "id": "33fe254c9ab3464f9cefb0735db5c7b6", "type": "s3", "name": "s3"}, {"endpoints": [{"id": "0e87b83617064bf4a310ac3b19bbb6d3", "interface": "admin", "region_id": "prodstack5", "url": "https://barbican-admin.ps5.canonical.com:9312", "region": "prodstack5"}, {"id": "11763e77618146d29b12e08749f72ebe", "interface": "public", "region_id": "prodstack5", "url": "https://barbican.ps5.canonical.com:9311", "region": "prodstack5"}, {"id": "c028b0aad7e64fc181028c5e580410ca", "interface": "internal", "region_id": "prodstack5", "url": "https://barbican-internal.ps5.canonical.com:9311", "region": "prodstack5"}], "id": "4a5b6290ebc64737b2ce1d680622c9b0", "type": "key-manager", "name": "barbican"}, {"endpoints": [{"id": "3e668beb71f6455d89614720578fb48e", "interface": "public", "region_id": "prodstack5", "url": "https://designate.ps5.canonical.com:9001", "region": "prodstack5"}, {"id": "4819d3baf6fe4074b00d4dbce532acc4", "interface": "admin", "region_id": "prodstack5", "url": "https://designate-admin.ps5.canonical.com:9001", "region": "prodstack5"}, {"id": "b40c9ffe39c64e5ca19cc2b1f3c74499", "interface": "internal", "region_id": "prodstack5", "url": "https://designate-internal.ps5.canonical.com:9001", "region": "prodstack5"}], "id": "4f3473e2e5994fee8132b0e6b5b96b10", "type": "dns", "name": "designate"}, {"endpoints": [{"id": "135a559d49ac4e308f9ba622ab4eea39", "interface": "admin", "region_id": "prodstack5", "url": "https://radosgw-admin.ps5.canonical.com:443/swift", "region": "prodstack5"}, {"id": "dbcd5cb805df4ab789e586b2d37cfebb", "interface": "public", "region_id": "prodstack5", "url": "https://radosgw.ps5.canonical.com:443/swift/v1/AUTH_a77cf7d04cc348e3b9aad5180306c3dd", "region": "prodstack5"}, {"id": "e313670eb03d431298eb0c604ebc0e5a", "interface": "internal", "region_id": "prodstack5", "url": "https://radosgw-internal.ps5.canonical.com:443/swift/v1/AUTH_a77cf7d04cc348e3b9aad5180306c3dd", "region": "prodstack5"}], "id": "7066b013a1bf45ea88db389a412e7e0a", "type": "object-store", "name": "swift"}, {"endpoints": [{"id": "1f02cd17eafd4c6898ba27eef5c27551", "interface": "admin", "region_id": "prodstack5", "url": "https://placement-admin.ps5.canonical.com:8778", "region": "prodstack5"}, {"id": "4eae3072a321488f9ff8514f0b4f9d23", "interface": "public", "region_id": "prodstack5", "url": "https://placement.ps5.canonical.com:8778", "region": "prodstack5"}, {"id": "7df5a1a986ad42258d3d2006d28a5658", "interface": "internal", "region_id": "prodstack5", "url": "https://placement-internal.ps5.canonical.com:8778", "region": "prodstack5"}], "id": "85421f66b1804c6298c7a5db84b753a2", "type": "placement", "name": "placement"}, {"endpoints": [{"id": "30c12456f82b43d0b7b3b9b38ee6b98d", "interface": "admin", "region_id": "prodstack5", "url": "https://keystone-admin.ps5.canonical.com:35357/v3", "region": "prodstack5"}, {"id": "8affc90f95f54139ac786bac07c69664", "interface": "public", "region_id": "prodstack5", "url": "https://keystone.ps5.canonical.com:5000/v3", "region": "prodstack5"}, {"id": "be617e6c3fa442258fb5e88d9f29f498", "interface": "internal", "region_id": "prodstack5", "url": "https://keystone-internal.ps5.canonical.com:5000/v3", "region": "prodstack5"}], "id": "9cedc56a694848cca451e602ba3d3546", "type": "identity", "name": "keystone"}, {"endpoints": [{"id": "b141a016f502463f929fc43e1204af09", "interface": "admin", "region_id": "prodstack5", "url": "https://radosgw-admin.ps5.canonical.com:443/swift", "region": "prodstack5"}, {"id": "c87abc0d0d4040f690f29523f449b40b", "interface": "public", "region_id": "prodstack5", "url": "https://radosgw.ps5.canonical.com:443/swift/v1/AUTH_6dd669096f9045e28e7895ef3e130559/simplestreams/data/", "region": "prodstack5"}, {"id": "dbf5c3b539c64cf78fef488590bf537e", "interface": "internal", "region_id": "prodstack5", "url": "https://radosgw-internal.ps5.canonical.com:443/swift/v1/AUTH_6dd669096f9045e28e7895ef3e130559/simplestreams/data/", "region": "prodstack5"}], "id": "a65e443f46b64434b1f926d1726653d5", "type": "product-streams", "name": "image-stream"}, {"endpoints": [{"id": "99d93600c5a44bc2a1ed77537833df85", "interface": "public", "region_id": "prodstack5", "url": "https://heat.ps5.canonical.com:8000/v1", "region": "prodstack5"}, {"id": "d8b9ce900b4c462a9a76c0602e97f263", "interface": "internal", "region_id": "prodstack5", "url": "https://heat-internal.ps5.canonical.com:8000/v1", "region": "prodstack5"}, {"id": "e2e1febd025547ddb27708842cd059cc", "interface": "admin", "region_id": "prodstack5", "url": "https://heat-admin.ps5.canonical.com:8000/v1", "region": "prodstack5"}], "id": "c3e7bea8f4a34b7da8d6d2fdd2f32833", "type": "cloudformation", "name": "heat-cfn"}, {"endpoints": [{"id": "6292435b5b24409087de737781d5a760", "interface": "internal", "region_id": "prodstack5", "url": "https://aodh-internal.ps5.canonical.com:8042", "region": "prodstack5"}, {"id": "660cbccb033641b6ac3680c85facfec7", "interface": "public", "region_id": "prodstack5", "url": "https://aodh.ps5.canonical.com:8042", "region": "prodstack5"}, {"id": "90112245ed1f46409e701fa1c9c12194", "interface": "admin", "region_id": "prodstack5", "url": "https://aodh-admin.ps5.canonical.com:8042", "region": "prodstack5"}], "id": "c5fe16dbcbab4875a376b69e9d60762b", "type": "alarming", "name": "aodh"}, {"endpoints": [{"id": "147effd39862447690863776c948b462", "interface": "internal", "region_id": "prodstack5", "url": "https://cinder-internal.ps5.canonical.com:8776/v2/a77cf7d04cc348e3b9aad5180306c3dd", "region": "prodstack5"}, {"id": "43c302450db34754a415aae292cf41bd", "interface": "public", "region_id": "prodstack5", "url": "https://cinder.ps5.canonical.com:8776/v2/a77cf7d04cc348e3b9aad5180306c3dd", "region": "prodstack5"}, {"id": "5052f17402424f418e320f48665fe1ac", "interface": "admin", "region_id": "prodstack5", "url": "https://cinder-admin.ps5.canonical.com:8776/v2/a77cf7d04cc348e3b9aad5180306c3dd", "region": "prodstack5"}], "id": "da8a1d72b62843e1baa4ca44bd82a9d3", "type": "volumev2", "name": "cinderv2"}]}} 612s REQ: curl -g -i -X GET https://nova.ps5.canonical.com:8774/v2.1 -H "Accept: application/json" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}6f721c76b1d185e1b02316c0dde1aa6bc65b9056ed0999384144a32e00df170a" 612s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps5.canonical.com:8774/v2.1 -H "Accept: application/json" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}6f721c76b1d185e1b02316c0dde1aa6bc65b9056ed0999384144a32e00df170a" 612s DEBUG (connectionpool:962) Starting new HTTPS connection (1): nova.ps5.canonical.com:8774 612s DEBUG (connectionpool:429) https://nova.ps5.canonical.com:8774 "GET /v2.1 HTTP/1.1" 302 0 612s RESP: [302] Connection: Keep-Alive Content-Length: 0 Content-Type: text/plain; charset=utf8 Date: Thu, 21 Mar 2024 13:05:09 GMT Keep-Alive: timeout=75, max=1000 Location: https://nova.ps5.canonical.com:8774/v2.1/ Server: Apache/2.4.41 (Ubuntu) x-compute-request-id: req-b8eecfd1-7d72-4a30-8ed4-3775e3adca70 x-openstack-request-id: req-b8eecfd1-7d72-4a30-8ed4-3775e3adca70 612s DEBUG (session:548) RESP: [302] Connection: Keep-Alive Content-Length: 0 Content-Type: text/plain; charset=utf8 Date: Thu, 21 Mar 2024 13:05:09 GMT Keep-Alive: timeout=75, max=1000 Location: https://nova.ps5.canonical.com:8774/v2.1/ Server: Apache/2.4.41 (Ubuntu) x-compute-request-id: req-b8eecfd1-7d72-4a30-8ed4-3775e3adca70 x-openstack-request-id: req-b8eecfd1-7d72-4a30-8ed4-3775e3adca70 612s RESP BODY: Omitted, Content-Type is set to text/plain; charset=utf8. Only application/json responses have their bodies logged. 612s DEBUG (session:580) RESP BODY: Omitted, Content-Type is set to text/plain; charset=utf8. Only application/json responses have their bodies logged. 612s DEBUG (connectionpool:429) https://nova.ps5.canonical.com:8774 "GET /v2.1/ HTTP/1.1" 200 397 612s RESP: [200] Connection: Keep-Alive Content-Length: 397 Content-Type: application/json Date: Thu, 21 Mar 2024 13:05:09 GMT Keep-Alive: timeout=75, max=999 OpenStack-API-Version: compute 2.1 Server: Apache/2.4.41 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.1 x-compute-request-id: req-dc1f727a-ebbd-4e7d-b7c2-c6270b8ab0b9 x-openstack-request-id: req-dc1f727a-ebbd-4e7d-b7c2-c6270b8ab0b9 612s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 397 Content-Type: application/json Date: Thu, 21 Mar 2024 13:05:09 GMT Keep-Alive: timeout=75, max=999 OpenStack-API-Version: compute 2.1 Server: Apache/2.4.41 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.1 x-compute-request-id: req-dc1f727a-ebbd-4e7d-b7c2-c6270b8ab0b9 x-openstack-request-id: req-dc1f727a-ebbd-4e7d-b7c2-c6270b8ab0b9 612s RESP BODY: {"version": {"id": "v2.1", "status": "CURRENT", "version": "2.87", "min_version": "2.1", "updated": "2013-07-23T11:33:21Z", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/"}, {"rel": "describedby", "type": "text/html", "href": "http://docs.openstack.org/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.compute+json;version=2.1"}]}} 612s DEBUG (session:580) RESP BODY: {"version": {"id": "v2.1", "status": "CURRENT", "version": "2.87", "min_version": "2.1", "updated": "2013-07-23T11:33:21Z", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/"}, {"rel": "describedby", "type": "text/html", "href": "http://docs.openstack.org/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.compute+json;version=2.1"}]}} 612s GET call to compute for https://nova.ps5.canonical.com:8774/v2.1/ used request id req-dc1f727a-ebbd-4e7d-b7c2-c6270b8ab0b9 612s DEBUG (session:936) GET call to compute for https://nova.ps5.canonical.com:8774/v2.1/ used request id req-dc1f727a-ebbd-4e7d-b7c2-c6270b8ab0b9 612s DEBUG (extension:189) found extension EntryPoint.parse('v1password = swiftclient.authv1:PasswordLoader') 612s DEBUG (extension:189) found extension EntryPoint.parse('noauth = cinderclient.contrib.noauth:CinderNoAuthLoader') 612s DEBUG (extension:189) found extension EntryPoint.parse('admin_token = keystoneauth1.loading._plugins.admin_token:AdminToken') 612s DEBUG (extension:189) found extension EntryPoint.parse('none = keystoneauth1.loading._plugins.noauth:NoAuth') 612s DEBUG (extension:189) found extension EntryPoint.parse('password = keystoneauth1.loading._plugins.identity.generic:Password') 612s DEBUG (extension:189) found extension EntryPoint.parse('token = keystoneauth1.loading._plugins.identity.generic:Token') 612s DEBUG (extension:189) found extension EntryPoint.parse('v2password = keystoneauth1.loading._plugins.identity.v2:Password') 612s DEBUG (extension:189) found extension EntryPoint.parse('v2token = keystoneauth1.loading._plugins.identity.v2:Token') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3adfspassword = keystoneauth1.extras._saml2._loading:ADFSPassword') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3applicationcredential = keystoneauth1.loading._plugins.identity.v3:ApplicationCredential') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3fedkerb = keystoneauth1.extras.kerberos._loading:MappedKerberos') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3kerberos = keystoneauth1.extras.kerberos._loading:Kerberos') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3multifactor = keystoneauth1.loading._plugins.identity.v3:MultiFactor') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3oauth1 = keystoneauth1.extras.oauth1._loading:V3OAuth1') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcaccesstoken = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAccessToken') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcauthcode = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAuthorizationCode') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcclientcredentials = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectClientCredentials') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcpassword = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectPassword') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3password = keystoneauth1.loading._plugins.identity.v3:Password') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3samlpassword = keystoneauth1.extras._saml2._loading:Saml2Password') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3token = keystoneauth1.loading._plugins.identity.v3:Token') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3tokenlessauth = keystoneauth1.loading._plugins.identity.v3:TokenlessAuth') 612s DEBUG (extension:189) found extension EntryPoint.parse('v3totp = keystoneauth1.loading._plugins.identity.v3:TOTP') 612s DEBUG (session:517) REQ: curl -g -i -X GET https://glance.ps5.canonical.com:9292/v2/images/3219a3f4-90ea-47d9-8dfb-3912f2ae9f95 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}6f721c76b1d185e1b02316c0dde1aa6bc65b9056ed0999384144a32e00df170a" -H "X-OpenStack-Nova-API-Version: 2.87" 612s DEBUG (connectionpool:962) Starting new HTTPS connection (1): glance.ps5.canonical.com:9292 612s DEBUG (connectionpool:429) https://glance.ps5.canonical.com:9292 "GET /v2/images/3219a3f4-90ea-47d9-8dfb-3912f2ae9f95 HTTP/1.1" 200 2137 612s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 2137 Content-Type: application/json Date: Thu, 21 Mar 2024 13:05:10 GMT Keep-Alive: timeout=5, max=100 Server: Apache/2.4.41 (Ubuntu) X-Openstack-Request-Id: req-5655cd2e-6260-4d29-be66-3cb404a96008 612s DEBUG (session:580) RESP BODY: {"architecture": "x86_64", "base_image_ref": "a8255c6f-27e8-4fbd-b2cb-48809d22500c", "boot_roles": "member,reader", "clean_attempts": "2", "content_id": "auto.sync", "image_location": "snapshot", "image_state": "available", "image_type": "snapshot", "instance_uuid": "c1a5f40d-373a-4ebb-b948-9ee966ddf0d2", "item_name": "disk1.img", "os_distro": "ubuntu", "os_version": "24.04", "owner_id": "a77cf7d04cc348e3b9aad5180306c3dd", "owner_project_name": "prod-proposed-migration_project", "owner_user_name": "prod-proposed-migration", "product_name": "com.ubuntu.cloud.daily:server:24.04:amd64", "simplestreams_metadata": "{\"aliases\": \"24.04,n,noble,devel\", \"arch\": \"amd64\", \"ftype\": \"disk1.img\", \"label\": \"daily\", \"md5\": \"7389041c488d1c996ccf0640bb16de5e\", \"os\": \"ubuntu\", \"pubname\": \"ubuntu-noble-daily-amd64-server-20240312\", \"release\": \"noble\", \"release_codename\": \"Noble Nu", "source_content_id": "com.ubuntu.cloud:daily:download", "user_id": "c01f0e5a065246f2a090a7d191029fce", "version_name": "20240312", "name": "adt/ubuntu-noble-amd64-server-20240320.img", "disk_format": "qcow2", "container_format": "bare", "visibility": "private", "size": 2537816064, "virtual_size": null, "status": "active", "checksum": "3ca65ceb55e1eeb734f3c775907ca0aa", "protected": false, "min_ram": 0, "min_disk": 20, "owner": "a77cf7d04cc348e3b9aad5180306c3dd", "os_hidden": false, "os_hash_algo": "sha512", "os_hash_value": "6b906a54fd659ee65ee60c69ff370a562a08d44b6bed00e76cb4d7ac06294af8e6e3af03f66525c99479db05fb563b01d77d78b6b6ac544beab50b987e3daf0f", "id": "3219a3f4-90ea-47d9-8dfb-3912f2ae9f95", "created_at": "2024-03-20T15:03:20Z", "updated_at": "2024-03-20T15:04:49Z", "locations": [{"url": "rbd://3d196f64-760e-11eb-b486-e7aafffac620/glance/3219a3f4-90ea-47d9-8dfb-3912f2ae9f95/snap", "metadata": {"store": "ceph"}}], "direct_url": "rbd://3d196f64-760e-11eb-b486-e7aafffac620/glance/3219a3f4-90ea-47d9-8dfb-3912f2ae9f95/snap", "tags": [], "self": "/v2/images/3219a3f4-90ea-47d9-8dfb-3912f2ae9f95", "file": "/v2/images/3219a3f4-90ea-47d9-8dfb-3912f2ae9f95/file", "schema": "/v2/schemas/image", "stores": "ceph"} 612s DEBUG (session:936) GET call to image for https://glance.ps5.canonical.com:9292/v2/images/3219a3f4-90ea-47d9-8dfb-3912f2ae9f95 used request id req-5655cd2e-6260-4d29-be66-3cb404a96008 612s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps5.canonical.com:8774/v2.1/flavors/autopkgtest -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}6f721c76b1d185e1b02316c0dde1aa6bc65b9056ed0999384144a32e00df170a" -H "X-OpenStack-Nova-API-Version: 2.87" 612s DEBUG (connectionpool:429) https://nova.ps5.canonical.com:8774 "GET /v2.1/flavors/autopkgtest HTTP/1.1" 404 84 612s DEBUG (session:548) RESP: [404] Connection: Keep-Alive Content-Length: 84 Content-Type: application/json; charset=UTF-8 Date: Thu, 21 Mar 2024 13:05:10 GMT Keep-Alive: timeout=75, max=998 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.41 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-9a0decd9-f7ac-430d-ba61-bc5684df44ec x-openstack-request-id: req-9a0decd9-f7ac-430d-ba61-bc5684df44ec 612s DEBUG (session:580) RESP BODY: {"itemNotFound": {"code": 404, "message": "Flavor autopkgtest could not be found."}} 612s DEBUG (session:936) GET call to compute for https://nova.ps5.canonical.com:8774/v2.1/flavors/autopkgtest used request id req-9a0decd9-f7ac-430d-ba61-bc5684df44ec 612s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps5.canonical.com:8774/v2.1/flavors?is_public=None -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}6f721c76b1d185e1b02316c0dde1aa6bc65b9056ed0999384144a32e00df170a" -H "X-OpenStack-Nova-API-Version: 2.87" 612s DEBUG (connectionpool:429) https://nova.ps5.canonical.com:8774 "GET /v2.1/flavors?is_public=None HTTP/1.1" 200 30288 612s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 30288 Content-Type: application/json Date: Thu, 21 Mar 2024 13:05:10 GMT Keep-Alive: timeout=75, max=997 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.41 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-31cdaae1-679b-4b76-b23e-4805ed26915e x-openstack-request-id: req-31cdaae1-679b-4b76-b23e-4805ed26915e 612s DEBUG (session:580) RESP BODY: {"flavors": [{"id": "02e9c87a-a583-4e03-9b7a-e12ac6e718de", "name": "builder-cpu16-ram32-disk20", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/02e9c87a-a583-4e03-9b7a-e12ac6e718de"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/02e9c87a-a583-4e03-9b7a-e12ac6e718de"}], "description": null}, {"id": "05985aaa-bad3-4e3e-93f8-a52755995027", "name": "builder-cpu4-ram64-disk100", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/05985aaa-bad3-4e3e-93f8-a52755995027"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/05985aaa-bad3-4e3e-93f8-a52755995027"}], "description": null}, {"id": "07ae4bac-2ce3-4dd4-8019-4a62a43d8d3f", "name": "builder-cpu32-ram16-disk20", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/07ae4bac-2ce3-4dd4-8019-4a62a43d8d3f"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/07ae4bac-2ce3-4dd4-8019-4a62a43d8d3f"}], "description": null}, {"id": "09e7dbfc-161e-47ae-a384-5cd6334b2d8b", "name": "builder-cpu2-ram12-disk20", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/09e7dbfc-161e-47ae-a384-5cd6334b2d8b"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/09e7dbfc-161e-47ae-a384-5cd6334b2d8b"}], "description": null}, {"id": "0f722088-0d98-4129-8e3d-b292a0adbe44", "name": "builder-cpu4-ram16-disk50", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/0f722088-0d98-4129-8e3d-b292a0adbe44"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/0f722088-0d98-4129-8e3d-b292a0adbe44"}], "description": null}, {"id": "1319cb50-758a-4b0a-9247-17f0e3fe4211", "name": "autopkgtest", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/1319cb50-758a-4b0a-9247-17f0e3fe4211"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/1319cb50-758a-4b0a-9247-17f0e3fe4211"}], "description": null}, {"id": "13d4378b-9327-4969-89a6-3c6750d93680", "name": "builder-cpu8-ram16-disk50", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/13d4378b-9327-4969-89a6-3c6750d93680"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/13d4378b-9327-4969-89a6-3c6750d93680"}], "description": null}, {"id": "140a24f9-8b65-4a0b-a95f-eeb96f38c5e9", "name": "builder-cpu8-ram8-disk100", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/140a24f9-8b65-4a0b-a95f-eeb96f38c5e9"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/140a24f9-8b65-4a0b-a95f-eeb96f38c5e9"}], "description": null}, {"id": "16cc919c-7e15-43e1-ba1e-a49fed5e3401", "name": "builder-cpu2-ram8-disk100", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/16cc919c-7e15-43e1-ba1e-a49fed5e3401"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/16cc919c-7e15-43e1-ba1e-a49fed5e3401"}], "description": null}, {"id": "18f42ccb-05c4-4d80-989b-d367dbe45ba3", "name": "builder-cpu16-ram4-disk20", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/18f42ccb-05c4-4d80-989b-d367dbe45ba3"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/18f42ccb-05c4-4d80-989b-d367dbe45ba3"}], "description": null}, {"id": "1bdf7801-90e7-4c6a-9ccc-0930a31ca27b", "name": "builder-cpu16-ram16-disk20", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/1bdf7801-90e7-4c6a-9ccc-0930a31ca27b"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/1bdf7801-90e7-4c6a-9ccc-0930a31ca27b"}], "description": null}, {"id": "1c18fadc-0f9b-4c9f-9595-8a74af82a72b", "name": "builder-cpu2-ram12-disk50", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/1c18fadc-0f9b-4c9f-9595-8a74af82a72b"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/1c18fadc-0f9b-4c9f-9595-8a74af82a72b"}], "description": null}, {"id": "1e731fe2-ffd3-4c27-b149-e102eccfe052", "name": "builder-cpu8-ram64-disk100", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/1e731fe2-ffd3-4c27-b149-e102eccfe052"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/1e731fe2-ffd3-4c27-b149-e102eccfe052"}], "description": null}, {"id": "1f730b22-ac7a-4474-8ea5-09db60e42555", "name": "builder-cpu2-ram64-disk20", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/1f730b22-ac7a-4474-8ea5-09db60e42555"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/1f730b22-ac7a-4474-8ea5-09db60e42555"}], "description": null}, {"id": "25e742fd-7fed-43b3-9f3b-0258bb5053a0", "name": "builder-cpu32-ram16-disk50", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/25e742fd-7fed-43b3-9f3b-0258bb5053a0"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/25e742fd-7fed-43b3-9f3b-0258bb5053a0"}], "description": null}, {"id": "26b00ebd-f8ed-48ea-9ef2-88700638dc7b", "name": "builder-cpu32-ram32-disk50", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/26b00ebd-f8ed-48ea-9ef2-88700638dc7b"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/26b00ebd-f8ed-48ea-9ef2-88700638dc7b"}], "description": null}, {"id": "2784156e-2387-494d-b64a-8ef8110b7b63", "name": "builder-cpu16-ram8-disk100", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/2784156e-2387-494d-b64a-8ef8110b7b63"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/2784156e-2387-494d-b64a-8ef8110b7b63"}], "description": null}, {"id": "28d0b426-6a41-45bf-ae80-a72fa286ae63", "name": "builder-cpu32-ram4-disk50", 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"bae423a2-460e-4fde-9931-6581734630f2", "name": "builder-cpu2-ram8-disk50", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/bae423a2-460e-4fde-9931-6581734630f2"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/bae423a2-460e-4fde-9931-6581734630f2"}], "description": null}, {"id": "bafb2a25-adf3-4c23-a2f2-bb93a7b322b5", "name": "builder-cpu8-ram4-disk20", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/bafb2a25-adf3-4c23-a2f2-bb93a7b322b5"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/bafb2a25-adf3-4c23-a2f2-bb93a7b322b5"}], "description": null}, {"id": "bc52d8c5-6267-4511-9ebb-968668f69b03", "name": "builder-cpu2-ram4-disk50", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/bc52d8c5-6267-4511-9ebb-968668f69b03"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/bc52d8c5-6267-4511-9ebb-968668f69b03"}], "description": null}, {"id": "bd3f2eeb-b0fc-49d5-9bf0-b116d353fe59", "name": "builder-cpu4-ram32-disk100", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/bd3f2eeb-b0fc-49d5-9bf0-b116d353fe59"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/bd3f2eeb-b0fc-49d5-9bf0-b116d353fe59"}], "description": null}, {"id": "bf774e98-a708-4015-aadd-a9d75e2e577e", "name": "builder-cpu8-ram64-disk50", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/bf774e98-a708-4015-aadd-a9d75e2e577e"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/bf774e98-a708-4015-aadd-a9d75e2e577e"}], "description": null}, {"id": "c8f31bd5-d40f-4ef0-8ad3-a378cc79be33", "name": "builder-cpu32-ram8-disk100", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/c8f31bd5-d40f-4ef0-8ad3-a378cc79be33"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/c8f31bd5-d40f-4ef0-8ad3-a378cc79be33"}], "description": null}, {"id": "c9a40e1b-3e3a-4b2b-9cb5-a8dcf3d277fd", "name": "builder-cpu4-ram4-disk50", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/c9a40e1b-3e3a-4b2b-9cb5-a8dcf3d277fd"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/c9a40e1b-3e3a-4b2b-9cb5-a8dcf3d277fd"}], "description": null}, {"id": "c9ccd7cb-7dc2-4c64-99fc-768fc34aea33", "name": "builder-cpu16-ram4-disk100", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/c9ccd7cb-7dc2-4c64-99fc-768fc34aea33"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/c9ccd7cb-7dc2-4c64-99fc-768fc34aea33"}], "description": null}, {"id": "ca65745f-04cc-4a79-b5d3-850d87ada100", "name": "builder-cpu2-ram16-disk20", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/ca65745f-04cc-4a79-b5d3-850d87ada100"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/ca65745f-04cc-4a79-b5d3-850d87ada100"}], "description": null}, {"id": "ca7d8fd5-7032-42fd-816d-e7b56688408b", "name": "builder-cpu2-ram44-disk20", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/ca7d8fd5-7032-42fd-816d-e7b56688408b"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/ca7d8fd5-7032-42fd-816d-e7b56688408b"}], "description": null}, {"id": "cc26157f-ed37-4dbd-abeb-1a460e5a3f89", "name": "builder-cpu2-ram64-disk100", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/cc26157f-ed37-4dbd-abeb-1a460e5a3f89"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/cc26157f-ed37-4dbd-abeb-1a460e5a3f89"}], "description": null}, {"id": "d1775bcf-3942-484b-92ff-f9c22cd4f971", "name": "builder-cpu2-ram16-disk50", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/d1775bcf-3942-484b-92ff-f9c22cd4f971"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/d1775bcf-3942-484b-92ff-f9c22cd4f971"}], "description": null}, {"id": "d83654b5-3a0f-47c4-9378-96534bc9d174", "name": "builder-cpu96-ram192-disk1000", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/d83654b5-3a0f-47c4-9378-96534bc9d174"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/d83654b5-3a0f-47c4-9378-96534bc9d174"}], "description": null}, {"id": "d8a4fd7d-9017-415f-9528-834277c9fedd", "name": "builder-cpu4-ram8-disk120", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/d8a4fd7d-9017-415f-9528-834277c9fedd"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/d8a4fd7d-9017-415f-9528-834277c9fedd"}], "description": null}, {"id": "d986a066-2af9-42cb-842a-1be8f588cfb1", "name": "builder-cpu2-ram4-disk20", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/d986a066-2af9-42cb-842a-1be8f588cfb1"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/d986a066-2af9-42cb-842a-1be8f588cfb1"}], "description": null}, {"id": "dd88672e-3c9b-48eb-b589-c710e92a3fcb", "name": "builder-cpu4-ram4-disk20", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/dd88672e-3c9b-48eb-b589-c710e92a3fcb"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/dd88672e-3c9b-48eb-b589-c710e92a3fcb"}], "description": null}, {"id": "dfa06abe-39ce-41b0-9309-79f3d3d12499", "name": "builder-cpu2-ram32-disk50", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/dfa06abe-39ce-41b0-9309-79f3d3d12499"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/dfa06abe-39ce-41b0-9309-79f3d3d12499"}], "description": null}, {"id": "e8da3984-1a76-4bb0-a502-48c4dc862979", "name": "builder-cpu4-ram32-disk50", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/e8da3984-1a76-4bb0-a502-48c4dc862979"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/e8da3984-1a76-4bb0-a502-48c4dc862979"}], "description": null}, {"id": "ecbfad98-f8ab-4fee-9978-ba5f2516b36c", "name": "builder-cpu4-ram16-disk100", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/ecbfad98-f8ab-4fee-9978-ba5f2516b36c"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/ecbfad98-f8ab-4fee-9978-ba5f2516b36c"}], "description": null}, {"id": "f14866bd-022b-43f8-996d-71cb0d89f87a", "name": "builder-cpu4-ram8-disk200", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/f14866bd-022b-43f8-996d-71cb0d89f87a"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/f14866bd-022b-43f8-996d-71cb0d89f87a"}], "description": null}, {"id": "f1ed6577-17da-4b4e-afc4-f9d7b9672cc5", "name": "builder-cpu2-ram12-disk100", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/f1ed6577-17da-4b4e-afc4-f9d7b9672cc5"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/f1ed6577-17da-4b4e-afc4-f9d7b9672cc5"}], "description": null}, {"id": "f2c24289-7055-4ca7-af16-a18d711558e9", "name": "builder-cpu8-ram4-disk100", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/f2c24289-7055-4ca7-af16-a18d711558e9"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/f2c24289-7055-4ca7-af16-a18d711558e9"}], "description": null}, {"id": "f431c620-abda-4a04-b4b1-c6699fdac063", "name": "builder-cpu2-ram4-disk100", "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/f431c620-abda-4a04-b4b1-c6699fdac063"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/f431c620-abda-4a04-b4b1-c6699fdac063"}], "description": null}]} 612s DEBUG (session:936) GET call to compute for https://nova.ps5.canonical.com:8774/v2.1/flavors?is_public=None used request id req-31cdaae1-679b-4b76-b23e-4805ed26915e 612s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps5.canonical.com:8774/v2.1/flavors/1319cb50-758a-4b0a-9247-17f0e3fe4211 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}6f721c76b1d185e1b02316c0dde1aa6bc65b9056ed0999384144a32e00df170a" -H "X-OpenStack-Nova-API-Version: 2.87" 612s DEBUG (connectionpool:429) https://nova.ps5.canonical.com:8774 "GET /v2.1/flavors/1319cb50-758a-4b0a-9247-17f0e3fe4211 HTTP/1.1" 200 607 612s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 607 Content-Type: application/json Date: Thu, 21 Mar 2024 13:05:10 GMT Keep-Alive: timeout=75, max=996 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.41 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-993b47a1-e383-475d-802d-738cd2d0daee x-openstack-request-id: req-993b47a1-e383-475d-802d-738cd2d0daee 612s DEBUG (session:580) RESP BODY: {"flavor": {"id": "1319cb50-758a-4b0a-9247-17f0e3fe4211", "name": "autopkgtest", "ram": 4096, "disk": 20, "swap": 0, "OS-FLV-EXT-DATA:ephemeral": 0, "OS-FLV-DISABLED:disabled": false, "vcpus": 2, "os-flavor-access:is_public": false, "rxtx_factor": 1.0, "links": [{"rel": "self", "href": "https://nova.ps5.canonical.com:8774/v2.1/flavors/1319cb50-758a-4b0a-9247-17f0e3fe4211"}, {"rel": "bookmark", "href": "https://nova.ps5.canonical.com:8774/flavors/1319cb50-758a-4b0a-9247-17f0e3fe4211"}], "description": null, "extra_specs": {"aggregate_instance_extra_specs:commit": "builder", "hw_rng:allowed": "True"}}} 612s DEBUG (session:936) GET call to compute for https://nova.ps5.canonical.com:8774/v2.1/flavors/1319cb50-758a-4b0a-9247-17f0e3fe4211 used request id req-993b47a1-e383-475d-802d-738cd2d0daee 612s DEBUG (session:517) REQ: curl -g -i -X POST https://nova.ps5.canonical.com:8774/v2.1/servers -H "Accept: application/json" -H "Content-Type: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}6f721c76b1d185e1b02316c0dde1aa6bc65b9056ed0999384144a32e00df170a" -H "X-OpenStack-Nova-API-Version: 2.87" -d '{"server": {"name": "adt-noble-i386-r-bioc-genomicfiles-20240321-130039-juju-7f2275-prod-proposed-migration-environment-3", "imageRef": "3219a3f4-90ea-47d9-8dfb-3912f2ae9f95", "flavorRef": "1319cb50-758a-4b0a-9247-17f0e3fe4211", "user_data": "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", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-3", "min_count": 1, "max_count": 1, "security_groups": [{"name": "autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-87.secgroup"}], "networks": [{"uuid": "0d0997a0-13bd-484c-b3b7-ebb3288d6a74"}]}}' 612s DEBUG (connectionpool:429) https://nova.ps5.canonical.com:8774 "POST /v2.1/servers HTTP/1.1" 403 115 612s DEBUG (session:548) RESP: [403] Connection: Keep-Alive Content-Length: 115 Content-Type: application/json; charset=UTF-8 Date: Thu, 21 Mar 2024 13:05:10 GMT Keep-Alive: timeout=75, max=995 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.41 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-55d90cc6-e0ba-477d-b0dc-0faf14af16f3 x-openstack-request-id: req-55d90cc6-e0ba-477d-b0dc-0faf14af16f3 612s DEBUG (session:580) RESP BODY: {"forbidden": {"code": 403, "message": "Quota exceeded for cores: Requested 2, but already used 300 of 300 cores"}} 612s DEBUG (session:936) POST call to compute for https://nova.ps5.canonical.com:8774/v2.1/servers used request id req-55d90cc6-e0ba-477d-b0dc-0faf14af16f3 612s DEBUG (shell:822) Quota exceeded for cores: Requested 2, but already used 300 of 300 cores (HTTP 403) (Request-ID: req-55d90cc6-e0ba-477d-b0dc-0faf14af16f3) 612s Traceback (most recent call last): 612s File "/usr/lib/python3/dist-packages/novaclient/shell.py", line 820, in main 612s OpenStackComputeShell().main(argv) 612s File "/usr/lib/python3/dist-packages/novaclient/shell.py", line 742, in main 612s args.func(self.cs, args) 612s File "/usr/lib/python3/dist-packages/novaclient/v2/shell.py", line 971, in do_boot 612s server = cs.servers.create(*boot_args, **boot_kwargs) 612s File "/usr/lib/python3/dist-packages/novaclient/v2/servers.py", line 1477, in create 612s return self._boot(response_key, *boot_args, **boot_kwargs) 612s File "/usr/lib/python3/dist-packages/novaclient/v2/servers.py", line 836, in _boot 612s return self._create('/servers', body, response_key, 612s File "/usr/lib/python3/dist-packages/novaclient/base.py", line 363, in _create 612s resp, body = self.api.client.post(url, body=body) 612s File "/usr/lib/python3/dist-packages/keystoneauth1/adapter.py", line 392, in post 612s return self.request(url, 'POST', **kwargs) 612s File "/usr/lib/python3/dist-packages/novaclient/client.py", line 78, in request 612s raise exceptions.from_response(resp, body, url, method) 612s novaclient.exceptions.Forbidden: Quota exceeded for cores: Requested 2, but already used 300 of 300 cores (HTTP 403) (Request-ID: req-55d90cc6-e0ba-477d-b0dc-0faf14af16f3) 612s ERROR (Forbidden): Quota exceeded for cores: Requested 2, but already used 300 of 300 cores (HTTP 403) (Request-ID: req-55d90cc6-e0ba-477d-b0dc-0faf14af16f3) 613s autopkgtest [13:10:52]: testbed dpkg architecture: amd64 613s autopkgtest [13:10:52]: testbed apt version: 2.7.12 613s autopkgtest [13:10:52]: test architecture: i386 613s autopkgtest [13:10:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup 613s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 613s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 613s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 613s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 613s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3818 kB] 614s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [697 kB] 614s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [460 kB] 614s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 614s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 614s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 614s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 614s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4242 kB] 614s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1281 kB] 614s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 614s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 614s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 614s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 617s Fetched 11.3 MB in 2s (7042 kB/s) 617s Reading package lists... 619s Reading package lists... 619s Building dependency tree... 619s Reading state information... 620s Calculating upgrade... 620s The following packages will be upgraded: 620s debianutils linux-firmware 620s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 620s Need to get 476 MB of archives. 620s After this operation, 5724 kB of additional disk space will be used. 620s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.17 [89.8 kB] 620s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-firmware amd64 20240318.git3b128b60-0ubuntu1 [475 MB] 624s Fetched 476 MB in 3s (138 MB/s) 624s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 624s Preparing to unpack .../debianutils_5.17_amd64.deb ... 624s Unpacking debianutils (5.17) over (5.16) ... 624s Setting up debianutils (5.17) ... 624s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 624s Preparing to unpack .../linux-firmware_20240318.git3b128b60-0ubuntu1_amd64.deb ... 624s Unpacking linux-firmware (20240318.git3b128b60-0ubuntu1) over (20240202.git36777504-0ubuntu1) ... 627s Setting up linux-firmware (20240318.git3b128b60-0ubuntu1) ... 627s Processing triggers for man-db (2.12.0-3) ... 629s Processing triggers for initramfs-tools (0.142ubuntu20) ... 629s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 629s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 637s Reading package lists... 637s Building dependency tree... 637s Reading state information... 637s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 638s sh: Attempting to set up Debian/Ubuntu apt sources automatically 638s sh: Distribution appears to be Ubuntu 639s Reading package lists... 639s Building dependency tree... 639s Reading state information... 639s eatmydata is already the newest version (131-1). 639s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 640s Reading package lists... 640s Building dependency tree... 640s Reading state information... 640s dbus is already the newest version (1.14.10-4ubuntu1). 640s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 640s Reading package lists... 640s Building dependency tree... 640s Reading state information... 641s rng-tools-debian is already the newest version (2.4). 641s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 641s Reading package lists... 641s Building dependency tree... 641s Reading state information... 642s The following packages will be REMOVED: 642s cloud-init* python3-configobj* python3-debconf* 642s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 642s After this operation, 3252 kB disk space will be freed. 642s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 642s Removing cloud-init (24.1.1-0ubuntu1) ... 643s Removing python3-configobj (5.0.8-3) ... 643s Removing python3-debconf (1.5.86) ... 643s Processing triggers for man-db (2.12.0-3) ... 643s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71476 files and directories currently installed.) 643s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 644s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 644s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 644s invoke-rc.d: policy-rc.d denied execution of try-restart. 644s Reading package lists... 644s Building dependency tree... 644s Reading state information... 645s linux-generic is already the newest version (6.8.0-11.11+1). 645s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 645s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 645s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 645s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 647s Reading package lists... 647s Reading package lists... 648s Building dependency tree... 648s Reading state information... 648s Calculating upgrade... 648s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 648s Reading package lists... 649s Building dependency tree... 649s Reading state information... 649s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 649s autopkgtest [13:11:28]: rebooting testbed after setup commands that affected boot 670s autopkgtest [13:11:49]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 671s autopkgtest [13:11:50]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicfiles 672s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (dsc) [2416 B] 672s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (tar) [291 kB] 672s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (diff) [5272 B] 672s gpgv: Signature made Fri Dec 1 10:41:34 2023 UTC 672s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 672s gpgv: issuer "tillea@rki.de" 672s gpgv: Can't check signature: No public key 672s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicfiles_1.38.0+dfsg-1.dsc: no acceptable signature found 672s autopkgtest [13:11:51]: testing package r-bioc-genomicfiles version 1.38.0+dfsg-1 673s autopkgtest [13:11:52]: build not needed 676s autopkgtest [13:11:55]: test pkg-r-autopkgtest: preparing testbed 680s Note, using file '/tmp/autopkgtest.U2tGIy/1-autopkgtest-satdep.dsc' to get the build dependencies 680s Reading package lists... 680s Building dependency tree... 680s Reading state information... 680s Starting pkgProblemResolver with broken count: 0 680s Starting 2 pkgProblemResolver with broken count: 0 680s Done 681s The following NEW packages will be installed: 681s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 681s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 681s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 681s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 681s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 681s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 681s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 681s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 681s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 681s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 681s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 681s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 681s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 681s libjs-highlight.js libjs-jquery libjs-jquery-datatables 681s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 681s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 681s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 681s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 681s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 681s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 681s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 681s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 681s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 681s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 681s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 681s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 681s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 681s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 681s r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase 681s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 681s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 681s r-bioc-delayedarray r-bioc-genefilter r-bioc-genomeinfodb 681s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 681s r-bioc-genomicfiles r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 681s r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 681s r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats r-bioc-sparsearray 681s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 681s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 681s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 681s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools 681s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 681s r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 681s r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome 681s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 681s r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools 681s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 681s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 681s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 681s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 681s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 681s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 681s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 681s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 681s r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr 681s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 681s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 681s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 681s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 681s 0 upgraded, 282 newly installed, 0 to remove and 0 not upgraded. 681s Need to get 450 MB of archives. 681s After this operation, 1378 MB of additional disk space will be used. 681s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 681s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 681s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 681s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 681s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 681s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 681s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 681s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 681s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 681s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 681s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 681s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 681s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 681s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 681s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 681s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 681s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 681s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 681s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 681s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 681s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 681s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 681s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 681s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 681s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 681s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 681s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 681s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 681s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 681s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 681s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 681s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 681s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 681s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 681s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 681s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 681s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 681s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 681s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 681s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 681s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 681s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 681s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 681s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 681s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 681s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 681s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 681s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 681s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 681s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 681s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 681s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 681s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 681s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 681s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 681s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 681s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 681s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 682s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 682s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 682s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 682s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 682s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 682s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 682s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 682s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 682s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 682s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 682s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 682s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 682s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 682s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 682s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 682s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 682s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 682s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 682s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 682s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 682s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 682s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 682s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 682s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 682s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 682s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 682s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 682s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 682s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 682s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 682s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 682s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 682s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 682s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 682s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 682s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 682s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 682s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 682s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 682s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 682s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 682s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 682s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 682s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 682s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 682s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 682s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 682s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 682s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 682s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 682s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 682s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 682s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 682s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 682s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 682s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 682s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 682s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 682s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 682s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 682s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 682s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 682s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 682s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 682s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 682s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 682s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 682s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 682s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 682s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 682s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 682s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 682s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 682s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 682s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 682s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 682s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 682s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 682s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 682s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 682s Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 682s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 682s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 682s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 682s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 682s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 682s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 682s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 682s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 682s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 682s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 682s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 682s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 682s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 682s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 682s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 682s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 682s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 682s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 682s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 682s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 682s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 682s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 682s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 682s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 682s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 682s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 682s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 682s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 682s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 682s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 682s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 682s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 682s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 682s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 682s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 682s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 682s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 682s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 682s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 682s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 682s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 682s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 682s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 682s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 682s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 682s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 682s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 682s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 682s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 682s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 682s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 682s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 682s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 682s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 682s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 682s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 682s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 682s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 682s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 682s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 682s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 682s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 682s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 682s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 683s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 683s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 683s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 683s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 683s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 683s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 683s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 683s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 683s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 683s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 683s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 683s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 683s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 683s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 683s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 683s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 683s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 683s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 683s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 683s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 683s Get:224 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 683s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 683s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 683s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 683s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 683s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 683s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 683s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 683s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 683s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 683s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 683s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 683s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 683s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 683s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 683s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 683s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 683s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 683s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 683s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 683s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 683s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 683s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 683s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 683s Get:248 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 683s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 683s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 683s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 683s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 683s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 683s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 683s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 683s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 683s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 683s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 683s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 684s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 684s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 684s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 684s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 684s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 684s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 684s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 684s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 684s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 684s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 684s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 684s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 684s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 684s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 684s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 684s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 684s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 684s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genefilter amd64 1.84.0-1 [1123 kB] 684s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 684s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-variantannotation amd64 1.48.1-1 [3527 kB] 684s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfiles all 1.38.0+dfsg-1 [532 kB] 684s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-snpstats amd64 1.52.0+dfsg-1 [7242 kB] 684s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-runit all 0.4.32-3 [283 kB] 685s Preconfiguring packages ... 685s Fetched 450 MB in 3s (146 MB/s) 685s Selecting previously unselected package libc-dev-bin. 685s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71421 files and directories currently installed.) 685s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 685s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 685s Selecting previously unselected package linux-libc-dev:amd64. 685s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 685s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 685s Selecting previously unselected package libcrypt-dev:amd64. 685s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 685s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 685s Selecting previously unselected package libtirpc-dev:amd64. 685s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 685s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 685s Selecting previously unselected package libnsl-dev:amd64. 685s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 685s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 685s Selecting previously unselected package rpcsvc-proto. 685s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 685s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 685s Selecting previously unselected package libc6-dev:amd64. 685s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 685s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 685s Selecting previously unselected package libisl23:amd64. 685s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 685s Unpacking libisl23:amd64 (0.26-3) ... 685s Selecting previously unselected package libmpc3:amd64. 685s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 685s Unpacking libmpc3:amd64 (1.3.1-1) ... 685s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 685s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 685s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 686s Selecting previously unselected package cpp-13. 686s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 686s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 686s Selecting previously unselected package cpp-x86-64-linux-gnu. 686s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 686s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 686s Selecting previously unselected package cpp. 686s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 686s Unpacking cpp (4:13.2.0-7ubuntu1) ... 686s Selecting previously unselected package libcc1-0:amd64. 686s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 686s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 686s Selecting previously unselected package libgomp1:amd64. 686s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 686s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 686s Selecting previously unselected package libitm1:amd64. 686s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 686s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 686s Selecting previously unselected package libatomic1:amd64. 686s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 686s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 686s Selecting previously unselected package libasan8:amd64. 686s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 686s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 686s Selecting previously unselected package liblsan0:amd64. 686s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 686s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 686s Selecting previously unselected package libtsan2:amd64. 686s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 686s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 686s Selecting previously unselected package libubsan1:amd64. 686s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 686s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 686s Selecting previously unselected package libhwasan0:amd64. 686s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 686s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 686s Selecting previously unselected package libquadmath0:amd64. 686s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 686s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 686s Selecting previously unselected package libgcc-13-dev:amd64. 686s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 686s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 686s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 686s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 686s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 687s Selecting previously unselected package gcc-13. 687s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 687s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 687s Selecting previously unselected package gcc-x86-64-linux-gnu. 687s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 687s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 687s Selecting previously unselected package gcc. 687s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 687s Unpacking gcc (4:13.2.0-7ubuntu1) ... 687s Selecting previously unselected package libstdc++-13-dev:amd64. 687s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 687s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 687s Selecting previously unselected package g++-13-x86-64-linux-gnu. 687s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 687s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 687s Selecting previously unselected package g++-13. 687s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 687s Unpacking g++-13 (13.2.0-17ubuntu2) ... 687s Selecting previously unselected package g++-x86-64-linux-gnu. 687s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 687s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 687s Selecting previously unselected package g++. 687s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 687s Unpacking g++ (4:13.2.0-7ubuntu1) ... 687s Selecting previously unselected package build-essential. 687s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 687s Unpacking build-essential (12.10ubuntu1) ... 687s Selecting previously unselected package dctrl-tools. 687s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 687s Unpacking dctrl-tools (2.24-3build2) ... 687s Selecting previously unselected package fonts-dejavu-mono. 687s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 687s Unpacking fonts-dejavu-mono (2.37-8) ... 687s Selecting previously unselected package fonts-dejavu-core. 687s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 687s Unpacking fonts-dejavu-core (2.37-8) ... 687s Selecting previously unselected package fontconfig-config. 687s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 687s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 688s Selecting previously unselected package libfontconfig1:amd64. 688s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 688s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 688s Selecting previously unselected package fontconfig. 688s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 688s Unpacking fontconfig (2.15.0-1ubuntu1) ... 688s Selecting previously unselected package fonts-font-awesome. 688s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 688s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 688s Selecting previously unselected package fonts-glyphicons-halflings. 688s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 688s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 688s Selecting previously unselected package fonts-lmodern. 688s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 688s Unpacking fonts-lmodern (2.005-1) ... 688s Selecting previously unselected package fonts-mathjax. 688s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 688s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 688s Selecting previously unselected package libgfortran5:amd64. 688s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 688s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 688s Selecting previously unselected package libgfortran-13-dev:amd64. 688s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 688s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 688s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 688s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 688s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 688s Selecting previously unselected package gfortran-13. 688s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 688s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 688s Selecting previously unselected package gfortran-x86-64-linux-gnu. 688s Preparing to unpack .../048-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 688s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 688s Selecting previously unselected package gfortran. 688s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 688s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 688s Selecting previously unselected package icu-devtools. 688s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_amd64.deb ... 688s Unpacking icu-devtools (74.2-1ubuntu1) ... 688s Selecting previously unselected package javascript-common. 688s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 688s Unpacking javascript-common (11+nmu1) ... 688s Selecting previously unselected package libio-string-perl. 688s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 688s Unpacking libio-string-perl (1.08-4) ... 688s Selecting previously unselected package liblatex-tounicode-perl. 688s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 688s Unpacking liblatex-tounicode-perl (0.54-2) ... 688s Selecting previously unselected package libbibtex-parser-perl. 688s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 688s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 688s Selecting previously unselected package libblas3:amd64. 688s Preparing to unpack .../055-libblas3_3.12.0-3_amd64.deb ... 688s Unpacking libblas3:amd64 (3.12.0-3) ... 688s Selecting previously unselected package libblas-dev:amd64. 688s Preparing to unpack .../056-libblas-dev_3.12.0-3_amd64.deb ... 688s Unpacking libblas-dev:amd64 (3.12.0-3) ... 688s Selecting previously unselected package libboost1.83-dev:amd64. 688s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 688s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 691s Selecting previously unselected package libboost-dev:amd64. 691s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 691s Unpacking libboost-dev:amd64 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libcairo2:amd64. 691s Preparing to unpack .../064-libcairo2_1.18.0-1_amd64.deb ... 691s Unpacking libcairo2:amd64 (1.18.0-1) ... 691s Selecting previously unselected package libdatrie1:amd64. 691s Preparing to unpack .../065-libdatrie1_0.2.13-3_amd64.deb ... 691s Unpacking libdatrie1:amd64 (0.2.13-3) ... 691s Selecting previously unselected package libdeflate0:amd64. 691s Preparing to unpack .../066-libdeflate0_1.19-1_amd64.deb ... 691s Unpacking libdeflate0:amd64 (1.19-1) ... 691s Selecting previously unselected package libgraphite2-3:amd64. 691s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_amd64.deb ... 691s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 691s Selecting previously unselected package libharfbuzz0b:amd64. 691s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_amd64.deb ... 691s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 691s Selecting previously unselected package x11-common. 691s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 691s Unpacking x11-common (1:7.7+23ubuntu2) ... 691s Selecting previously unselected package libice6:amd64. 691s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_amd64.deb ... 691s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 691s Selecting previously unselected package libicu-dev:amd64. 691s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_amd64.deb ... 691s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 692s Selecting previously unselected package libjpeg-turbo8:amd64. 692s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 692s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 692s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 692s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 692s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 692s Selecting previously unselected package libjpeg8:amd64. 692s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_amd64.deb ... 692s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 692s Selecting previously unselected package libjpeg8-dev:amd64. 692s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 692s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 692s Selecting previously unselected package libjpeg-dev:amd64. 692s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 692s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 692s Selecting previously unselected package libjs-bootstrap. 692s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 692s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 692s Selecting previously unselected package libjs-popper.js. 692s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 692s Unpacking libjs-popper.js (1.16.1+ds-6) ... 692s Selecting previously unselected package libjs-bootstrap4. 692s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 692s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 692s Selecting previously unselected package libjs-d3. 692s 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Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 693s Selecting previously unselected package liblua5.4-0:amd64. 693s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_amd64.deb ... 693s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 693s Selecting previously unselected package libncurses-dev:amd64. 693s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 693s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 693s Selecting previously unselected package libthai-data. 693s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 693s Unpacking libthai-data (0.1.29-2) ... 693s Selecting previously unselected package libthai0:amd64. 693s Preparing to unpack .../099-libthai0_0.1.29-2_amd64.deb ... 693s Unpacking libthai0:amd64 (0.1.29-2) ... 693s Selecting previously unselected package libpango-1.0-0:amd64. 693s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 693s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 693s Selecting previously unselected package libpangoft2-1.0-0:amd64. 693s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 693s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 693s Selecting previously unselected package libpangocairo-1.0-0:amd64. 693s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 693s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 693s Selecting previously unselected package libpaper1:amd64. 693s Preparing to unpack .../103-libpaper1_1.1.29_amd64.deb ... 693s Unpacking libpaper1:amd64 (1.1.29) ... 693s Selecting previously unselected package libpaper-utils. 693s Preparing to unpack .../104-libpaper-utils_1.1.29_amd64.deb ... 693s Unpacking libpaper-utils (1.1.29) ... 693s Selecting previously unselected package libpcre2-16-0:amd64. 693s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 693s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 693s Selecting previously unselected package 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Preparing to unpack .../111-libpng-dev_1.6.43-1_amd64.deb ... 693s Unpacking libpng-dev:amd64 (1.6.43-1) ... 693s Selecting previously unselected package libpotrace0:amd64. 693s Preparing to unpack .../112-libpotrace0_1.16-2_amd64.deb ... 693s Unpacking libpotrace0:amd64 (1.16-2) ... 693s Selecting previously unselected package libptexenc1:amd64. 693s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_amd64.deb ... 693s Unpacking libptexenc1:amd64 (2023.20230311.66589-9) ... 693s Selecting previously unselected package libreadline-dev:amd64. 693s Preparing to unpack .../114-libreadline-dev_8.2-3_amd64.deb ... 693s Unpacking libreadline-dev:amd64 (8.2-3) ... 693s Selecting previously unselected package libsharpyuv0:amd64. 693s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_amd64.deb ... 693s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 693s Selecting previously unselected package libsm6:amd64. 693s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_amd64.deb ... 693s 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unpack .../127-libxt6_1%3a1.2.1-1.1_amd64.deb ... 694s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 694s Selecting previously unselected package libxmu6:amd64. 694s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_amd64.deb ... 694s Unpacking libxmu6:amd64 (2:1.1.3-3) ... 694s Selecting previously unselected package libxpm4:amd64. 694s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_amd64.deb ... 694s Unpacking libxpm4:amd64 (1:3.5.17-1) ... 694s Selecting previously unselected package libxaw7:amd64. 694s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_amd64.deb ... 694s Unpacking libxaw7:amd64 (2:1.0.14-1) ... 694s Selecting previously unselected package libxi6:amd64. 694s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_amd64.deb ... 694s Unpacking libxi6:amd64 (2:1.8.1-1) ... 694s Selecting previously unselected package libzzip-0-13:amd64. 694s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... 694s Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 694s 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695s Unpacking pkgconf-bin (1.8.1-2) ... 695s Selecting previously unselected package pkgconf:amd64. 695s Preparing to unpack .../139-pkgconf_1.8.1-2_amd64.deb ... 695s Unpacking pkgconf:amd64 (1.8.1-2) ... 695s Selecting previously unselected package pkg-config:amd64. 695s Preparing to unpack .../140-pkg-config_1.8.1-2_amd64.deb ... 695s Unpacking pkg-config:amd64 (1.8.1-2) ... 695s Selecting previously unselected package zip. 695s Preparing to unpack .../141-zip_3.0-13_amd64.deb ... 695s Unpacking zip (3.0-13) ... 695s Selecting previously unselected package unzip. 695s Preparing to unpack .../142-unzip_6.0-28ubuntu3_amd64.deb ... 695s Unpacking unzip (6.0-28ubuntu3) ... 695s Selecting previously unselected package xdg-utils. 695s Preparing to unpack .../143-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 695s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 695s Selecting previously unselected package r-base-core. 695s Preparing to unpack .../144-r-base-core_4.3.2-1build1_amd64.deb ... 695s Unpacking r-base-core (4.3.2-1build1) ... 696s Selecting previously unselected package liblzma-dev:amd64. 696s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_amd64.deb ... 696s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 696s Selecting previously unselected package r-base-dev. 696s Preparing to unpack .../146-r-base-dev_4.3.2-1build1_all.deb ... 696s Unpacking r-base-dev (4.3.2-1build1) ... 696s Selecting previously unselected package pkg-r-autopkgtest. 696s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 696s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 696s Selecting previously unselected package r-bioc-biocgenerics. 696s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 696s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 696s Selecting previously unselected package r-bioc-biobase. 696s Preparing to unpack .../149-r-bioc-biobase_2.62.0-1_amd64.deb ... 696s Unpacking r-bioc-biobase (2.62.0-1) ... 696s Selecting previously unselected package r-bioc-s4vectors. 696s Preparing to unpack .../150-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 696s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 696s Selecting previously unselected package r-bioc-iranges. 696s Preparing to unpack .../151-r-bioc-iranges_2.36.0-1_amd64.deb ... 696s Unpacking r-bioc-iranges (2.36.0-1) ... 696s Selecting previously unselected package r-cran-dbi. 696s Preparing to unpack .../152-r-cran-dbi_1.2.2-1_all.deb ... 696s Unpacking r-cran-dbi (1.2.2-1) ... 696s Selecting previously unselected package r-cran-bit. 696s Preparing to unpack .../153-r-cran-bit_4.0.5-1_amd64.deb ... 696s Unpacking r-cran-bit (4.0.5-1) ... 696s Selecting previously unselected package r-cran-bit64. 696s Preparing to unpack .../154-r-cran-bit64_4.0.5-1_amd64.deb ... 696s Unpacking r-cran-bit64 (4.0.5-1) ... 696s Selecting previously unselected package r-cran-rlang. 696s Preparing to unpack .../155-r-cran-rlang_1.1.3-1_amd64.deb ... 696s Unpacking r-cran-rlang (1.1.3-1) ... 696s Selecting previously unselected package r-cran-cli. 696s Preparing to unpack .../156-r-cran-cli_3.6.2-1_amd64.deb ... 696s Unpacking r-cran-cli (3.6.2-1) ... 696s Selecting previously unselected package r-cran-glue. 696s Preparing to unpack .../157-r-cran-glue_1.7.0-1_amd64.deb ... 696s Unpacking r-cran-glue (1.7.0-1) ... 696s Selecting previously unselected package r-cran-lifecycle. 696s Preparing to unpack .../158-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 696s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 696s Selecting previously unselected package r-cran-vctrs. 696s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_amd64.deb ... 696s Unpacking r-cran-vctrs (0.6.5-1) ... 696s Selecting previously unselected package r-cran-blob. 696s Preparing to unpack .../160-r-cran-blob_1.2.4-1_all.deb ... 696s Unpacking r-cran-blob (1.2.4-1) ... 696s Selecting previously unselected package r-cran-fastmap. 696s Preparing to unpack .../161-r-cran-fastmap_1.1.1-1_amd64.deb ... 696s Unpacking r-cran-fastmap (1.1.1-1) ... 696s Selecting previously unselected package r-cran-cachem. 696s Preparing to unpack .../162-r-cran-cachem_1.0.8-1_amd64.deb ... 696s Unpacking r-cran-cachem (1.0.8-1) ... 696s Selecting previously unselected package r-cran-memoise. 696s Preparing to unpack .../163-r-cran-memoise_2.0.1-1_all.deb ... 696s Unpacking r-cran-memoise (2.0.1-1) ... 696s Selecting previously unselected package r-cran-pkgconfig. 696s Preparing to unpack .../164-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 696s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 697s Selecting previously unselected package r-cran-plogr. 697s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build1_all.deb ... 697s Unpacking r-cran-plogr (0.2.0-3build1) ... 697s Selecting previously unselected package r-cran-cpp11. 697s Preparing to unpack .../166-r-cran-cpp11_0.4.7-1_all.deb ... 697s Unpacking r-cran-cpp11 (0.4.7-1) ... 697s Selecting previously unselected package r-cran-rsqlite. 697s Preparing to unpack .../167-r-cran-rsqlite_2.3.4-1_amd64.deb ... 697s Unpacking r-cran-rsqlite (2.3.4-1) ... 697s Selecting previously unselected package r-cran-curl. 697s Preparing to unpack .../168-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 697s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 697s Selecting previously unselected package r-cran-jsonlite. 697s Preparing to unpack .../169-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 697s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 697s Selecting previously unselected package r-cran-mime. 697s Preparing to unpack .../170-r-cran-mime_0.12-1_amd64.deb ... 697s Unpacking r-cran-mime (0.12-1) ... 697s Selecting previously unselected package r-cran-sys. 697s Preparing to unpack .../171-r-cran-sys_3.4.2-1_amd64.deb ... 697s Unpacking r-cran-sys (3.4.2-1) ... 697s Selecting previously unselected package r-cran-askpass. 697s Preparing to unpack .../172-r-cran-askpass_1.2.0-1_amd64.deb ... 697s Unpacking r-cran-askpass (1.2.0-1) ... 697s Selecting previously unselected package r-cran-openssl. 697s Preparing to unpack .../173-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 697s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 697s Selecting previously unselected package r-cran-r6. 697s Preparing to unpack .../174-r-cran-r6_2.5.1-1_all.deb ... 697s Unpacking r-cran-r6 (2.5.1-1) ... 697s Selecting previously unselected package r-cran-httr. 697s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ... 697s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 697s Selecting previously unselected package r-cran-png. 697s Preparing to unpack .../176-r-cran-png_0.1-8-1_amd64.deb ... 697s Unpacking r-cran-png (0.1-8-1) ... 697s Selecting previously unselected package r-bioc-zlibbioc. 697s Preparing to unpack .../177-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 697s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 697s Selecting previously unselected package r-bioc-xvector. 697s Preparing to unpack .../178-r-bioc-xvector_0.42.0-1_amd64.deb ... 697s Unpacking r-bioc-xvector (0.42.0-1) ... 697s Selecting previously unselected package r-cran-bitops. 697s Preparing to unpack .../179-r-cran-bitops_1.0-7-1_amd64.deb ... 697s Unpacking r-cran-bitops (1.0-7-1) ... 697s Selecting previously unselected package r-cran-rcurl. 697s Preparing to unpack .../180-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 697s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 697s Selecting previously unselected package r-bioc-genomeinfodbdata. 697s Preparing to unpack .../181-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 697s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 697s Selecting previously unselected package r-bioc-genomeinfodb. 697s Preparing to unpack .../182-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 697s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 697s Selecting previously unselected package r-cran-crayon. 697s Preparing to unpack .../183-r-cran-crayon_1.5.2-1_all.deb ... 697s Unpacking r-cran-crayon (1.5.2-1) ... 697s Selecting previously unselected package r-bioc-biostrings. 697s Preparing to unpack .../184-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 697s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 698s Selecting previously unselected package r-bioc-keggrest. 698s Preparing to unpack .../185-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 698s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 698s Selecting previously unselected package r-bioc-annotationdbi. 698s Preparing to unpack .../186-r-bioc-annotationdbi_1.64.1-1_all.deb ... 698s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 698s Selecting previously unselected package r-cran-xml. 698s Preparing to unpack .../187-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 698s Unpacking r-cran-xml (3.99-0.16.1-1) ... 698s Selecting previously unselected package r-cran-xtable. 698s Preparing to unpack .../188-r-cran-xtable_1%3a1.8-4-2_all.deb ... 698s Unpacking r-cran-xtable (1:1.8-4-2) ... 698s Selecting previously unselected package r-bioc-annotate. 698s Preparing to unpack .../189-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 698s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 698s Selecting previously unselected package r-cran-generics. 698s Preparing to unpack .../190-r-cran-generics_0.1.3-1_all.deb ... 698s Unpacking r-cran-generics (0.1.3-1) ... 698s Selecting previously unselected package r-cran-magrittr. 698s Preparing to unpack .../191-r-cran-magrittr_2.0.3-1_amd64.deb ... 698s Unpacking r-cran-magrittr (2.0.3-1) ... 698s Selecting previously unselected package r-cran-fansi. 698s Preparing to unpack .../192-r-cran-fansi_1.0.5-1_amd64.deb ... 698s Unpacking r-cran-fansi (1.0.5-1) ... 698s Selecting previously unselected package r-cran-utf8. 698s Preparing to unpack .../193-r-cran-utf8_1.2.4-1_amd64.deb ... 698s Unpacking r-cran-utf8 (1.2.4-1) ... 698s Selecting previously unselected package r-cran-pillar. 698s Preparing to unpack .../194-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 698s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 698s Selecting previously unselected package r-cran-tibble. 698s Preparing to unpack .../195-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 698s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 698s Selecting previously unselected package r-cran-withr. 698s Preparing to unpack .../196-r-cran-withr_2.5.0-1_all.deb ... 698s Unpacking r-cran-withr (2.5.0-1) ... 698s Selecting previously unselected package r-cran-tidyselect. 698s Preparing to unpack .../197-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 698s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 698s Selecting previously unselected package r-cran-dplyr. 698s Preparing to unpack .../198-r-cran-dplyr_1.1.4-1_amd64.deb ... 698s Unpacking r-cran-dplyr (1.1.4-1) ... 698s Selecting previously unselected package r-cran-purrr. 698s Preparing to unpack .../199-r-cran-purrr_1.0.2-1_amd64.deb ... 698s Unpacking r-cran-purrr (1.0.2-1) ... 698s Selecting previously unselected package r-cran-stringi. 698s Preparing to unpack .../200-r-cran-stringi_1.8.3-1_amd64.deb ... 698s Unpacking r-cran-stringi (1.8.3-1) ... 698s Selecting previously unselected package r-cran-stringr. 698s Preparing to unpack .../201-r-cran-stringr_1.5.1-1_all.deb ... 698s Unpacking r-cran-stringr (1.5.1-1) ... 698s Selecting previously unselected package r-cran-tidyr. 698s Preparing to unpack .../202-r-cran-tidyr_1.3.1-1_amd64.deb ... 698s Unpacking r-cran-tidyr (1.3.1-1) ... 698s Selecting previously unselected package r-cran-dbplyr. 698s Preparing to unpack .../203-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 698s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 699s Selecting previously unselected package r-cran-filelock. 699s Preparing to unpack .../204-r-cran-filelock_1.0.3-1_amd64.deb ... 699s Unpacking r-cran-filelock (1.0.3-1) ... 699s Selecting previously unselected package r-bioc-biocfilecache. 699s Preparing to unpack .../205-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 699s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 699s Selecting previously unselected package r-bioc-biocio. 699s Preparing to unpack .../206-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 699s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 699s Selecting previously unselected package r-cran-formatr. 699s Preparing to unpack .../207-r-cran-formatr_1.14-1_all.deb ... 699s Unpacking r-cran-formatr (1.14-1) ... 699s Selecting previously unselected package r-cran-lambda.r. 699s Preparing to unpack .../208-r-cran-lambda.r_1.2.4-2build1_all.deb ... 699s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 699s Selecting previously unselected package r-cran-futile.options. 699s Preparing to unpack .../209-r-cran-futile.options_1.0.1-3build1_all.deb ... 699s Unpacking r-cran-futile.options (1.0.1-3build1) ... 699s Selecting previously unselected package r-cran-futile.logger. 699s Preparing to unpack .../210-r-cran-futile.logger_1.4.3-4build1_all.deb ... 699s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 699s Selecting previously unselected package r-cran-snow. 699s Preparing to unpack .../211-r-cran-snow_1%3a0.4.4-2_all.deb ... 699s Unpacking r-cran-snow (1:0.4.4-2) ... 699s Selecting previously unselected package r-cran-codetools. 699s Preparing to unpack .../212-r-cran-codetools_0.2-19-1_all.deb ... 699s Unpacking r-cran-codetools (0.2-19-1) ... 699s Selecting previously unselected package r-cran-bh. 699s Preparing to unpack .../213-r-cran-bh_1.84.0-1_all.deb ... 699s Unpacking r-cran-bh (1.84.0-1) ... 699s Selecting previously unselected package r-bioc-biocparallel. 699s Preparing to unpack .../214-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 699s Unpacking r-bioc-biocparallel (1.36.0-1) ... 699s Selecting previously unselected package r-cran-base64enc. 699s Preparing to unpack .../215-r-cran-base64enc_0.1-3-3_amd64.deb ... 699s Unpacking r-cran-base64enc (0.1-3-3) ... 699s Selecting previously unselected package r-cran-digest. 699s Preparing to unpack .../216-r-cran-digest_0.6.34-1_amd64.deb ... 699s Unpacking r-cran-digest (0.6.34-1) ... 699s Selecting previously unselected package r-cran-ellipsis. 699s Preparing to unpack .../217-r-cran-ellipsis_0.3.2-2_amd64.deb ... 699s Unpacking r-cran-ellipsis (0.3.2-2) ... 699s Selecting previously unselected package r-cran-htmltools. 699s Preparing to unpack .../218-r-cran-htmltools_0.5.7-1_amd64.deb ... 699s Unpacking r-cran-htmltools (0.5.7-1) ... 699s Selecting previously unselected package r-cran-evaluate. 699s Preparing to unpack .../219-r-cran-evaluate_0.23-1_all.deb ... 699s Unpacking r-cran-evaluate (0.23-1) ... 699s Selecting previously unselected package r-cran-xfun. 699s Preparing to unpack .../220-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 699s Unpacking r-cran-xfun (0.41+dfsg-1) ... 699s Selecting previously unselected package r-cran-highr. 699s Preparing to unpack .../221-r-cran-highr_0.10+dfsg-1_all.deb ... 699s Unpacking r-cran-highr (0.10+dfsg-1) ... 699s Selecting previously unselected package r-cran-yaml. 699s Preparing to unpack .../222-r-cran-yaml_2.3.8-1_amd64.deb ... 699s Unpacking r-cran-yaml (2.3.8-1) ... 699s Selecting previously unselected package libjs-mathjax. 699s Preparing to unpack .../223-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 699s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 700s Selecting previously unselected package r-cran-knitr. 700s Preparing to unpack .../224-r-cran-knitr_1.45+dfsg-1_all.deb ... 700s Unpacking r-cran-knitr (1.45+dfsg-1) ... 700s Selecting previously unselected package r-cran-jquerylib. 700s Preparing to unpack .../225-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 700s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 700s Selecting previously unselected package r-cran-fs. 700s Preparing to unpack .../226-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 700s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 700s Selecting previously unselected package r-cran-rappdirs. 700s Preparing to unpack .../227-r-cran-rappdirs_0.3.3-1_amd64.deb ... 700s Unpacking r-cran-rappdirs (0.3.3-1) ... 700s Selecting previously unselected package r-cran-sass. 700s Preparing to unpack .../228-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 700s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 700s Selecting previously unselected package r-cran-bslib. 700s Preparing to unpack .../229-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 700s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 700s Selecting previously unselected package r-cran-fontawesome. 700s Preparing to unpack .../230-r-cran-fontawesome_0.5.2-1_all.deb ... 700s Unpacking r-cran-fontawesome (0.5.2-1) ... 701s Selecting previously unselected package r-cran-tinytex. 701s Preparing to unpack .../231-r-cran-tinytex_0.49-1_all.deb ... 701s Unpacking r-cran-tinytex (0.49-1) ... 701s Selecting previously unselected package libjs-modernizr. 701s Preparing to unpack .../232-libjs-modernizr_2.6.2+ds1-5_all.deb ... 701s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 701s Selecting previously unselected package r-cran-littler. 701s Preparing to unpack .../233-r-cran-littler_0.3.19-1_amd64.deb ... 701s Unpacking r-cran-littler (0.3.19-1) ... 701s Selecting previously unselected package r-cran-pkgkitten. 701s Preparing to unpack .../234-r-cran-pkgkitten_0.2.3-1_all.deb ... 701s Unpacking r-cran-pkgkitten (0.2.3-1) ... 701s Selecting previously unselected package r-cran-rcpp. 701s Preparing to unpack .../235-r-cran-rcpp_1.0.12-1_amd64.deb ... 701s Unpacking r-cran-rcpp (1.0.12-1) ... 701s Selecting previously unselected package r-cran-later. 701s Preparing to unpack .../236-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 701s Unpacking r-cran-later (1.3.2+dfsg-1) ... 701s Selecting previously unselected package r-cran-promises. 701s Preparing to unpack .../237-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 701s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 701s Selecting previously unselected package r-cran-httpuv. 701s Preparing to unpack .../238-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 701s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 701s Selecting previously unselected package r-cran-sourcetools. 701s Preparing to unpack .../239-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 701s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 701s Selecting previously unselected package r-cran-commonmark. 701s Preparing to unpack .../240-r-cran-commonmark_1.9.1-1_amd64.deb ... 701s Unpacking r-cran-commonmark (1.9.1-1) ... 701s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 701s Preparing to unpack .../241-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 701s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 701s Selecting previously unselected package r-cran-shiny. 701s Preparing to unpack .../242-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 701s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 701s Selecting previously unselected package r-cran-rmarkdown. 701s Preparing to unpack .../243-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 701s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 701s Selecting previously unselected package r-cran-bookdown. 701s Preparing to unpack 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size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 714s Setting up r-cran-magrittr (2.0.3-1) ... 714s Setting up r-cran-rappdirs (0.3.3-1) ... 714s Setting up r-cran-filelock (1.0.3-1) ... 714s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 714s Setting up r-cran-littler (0.3.19-1) ... 714s Setting up r-cran-bh (1.84.0-1) ... 714s Setting up r-cran-fs (1.6.3+dfsg-1) ... 714s Setting up r-cran-rcpp (1.0.12-1) ... 714s Setting up r-cran-curl (5.2.0+dfsg-1) ... 714s Setting up r-cran-codetools (0.2-19-1) ... 714s Setting up g++-13 (13.2.0-17ubuntu2) ... 714s Setting up r-bioc-biocgenerics (0.48.1-2) ... 714s Setting up r-cran-rlang (1.1.3-1) ... 714s Setting up r-cran-matrixstats (1.2.0-1) ... 714s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 714s Setting up r-cran-xfun (0.41+dfsg-1) ... 714s Setting up r-cran-sys (3.4.2-1) ... 714s Setting up r-cran-plogr (0.2.0-3build1) ... 714s Setting up r-cran-withr (2.5.0-1) ... 714s Setting up r-cran-mime (0.12-1) ... 714s Setting up r-cran-generics (0.1.3-1) ... 714s Setting up r-cran-base64enc (0.1-3-3) ... 714s Setting up r-cran-abind (1.4-5-2) ... 714s Setting up r-cran-digest (0.6.34-1) ... 714s Setting up r-cran-yaml (2.3.8-1) ... 714s Setting up r-cran-lambda.r (1.2.4-2build1) ... 714s Setting up r-cran-evaluate (0.23-1) ... 714s Setting up r-cran-dbi (1.2.2-1) ... 714s Setting up r-cran-highr (0.10+dfsg-1) ... 714s Setting up r-cran-prettyunits (1.2.0-1) ... 714s Setting up r-cran-fansi (1.0.5-1) ... 714s Setting up r-cran-snow (1:0.4.4-2) ... 714s Setting up r-cran-glue (1.7.0-1) ... 714s Setting up r-cran-bit (4.0.5-1) ... 714s Setting up r-cran-xtable (1:1.8-4-2) ... 714s Setting up r-cran-cli (3.6.2-1) ... 714s Setting up gfortran (4:13.2.0-7ubuntu1) ... 714s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 714s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 714s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 714s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 714s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 714s Setting up r-cran-bitops (1.0-7-1) ... 714s Setting up r-cran-bit64 (4.0.5-1) ... 714s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 714s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 714s Setting up r-cran-askpass (1.2.0-1) ... 714s Setting up r-cran-fastmap (1.1.1-1) ... 714s Setting up r-cran-png (0.1-8-1) ... 714s Setting up r-bioc-biobase (2.62.0-1) ... 714s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 714s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 714s Setting up r-cran-utf8 (1.2.4-1) ... 714s Setting up r-cran-stringi (1.8.3-1) ... 714s Setting up texlive-latex-base (2023.20240207-1) ... 714s Setting up r-cran-cpp11 (0.4.7-1) ... 714s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 714s Setting up r-cran-runit (0.4.32-3) ... 714s Setting up r-cran-futile.logger (1.4.3-4build1) ... 714s Setting up r-cran-later (1.3.2+dfsg-1) ... 714s Setting up r-cran-matrix (1.6-5-1) ... 714s Setting up r-cran-tinytex (0.49-1) ... 714s Setting up r-cran-knitr (1.45+dfsg-1) ... 714s Setting up g++ (4:13.2.0-7ubuntu1) ... 714s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 714s Setting up r-cran-cachem (1.0.8-1) ... 714s Setting up build-essential (12.10ubuntu1) ... 714s Setting up r-bioc-iranges (2.36.0-1) ... 714s Setting up r-cran-rjson (0.2.21-1) ... 714s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 714s Setting up r-cran-restfulr (0.0.15-1) ... 714s Setting up r-cran-vctrs (0.6.5-1) ... 714s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 714s Setting up r-cran-ellipsis (0.3.2-2) ... 714s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 714s Setting up r-base-dev (4.3.2-1build1) ... 714s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 714s Setting up r-cran-stringr (1.5.1-1) ... 714s Setting up r-bioc-biocparallel (1.36.0-1) ... 714s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 714s Setting up r-cran-xml2 (1.3.6-1) ... 714s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 714s Setting up r-cran-survival (3.5-8-1) ... 714s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 714s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 714s Setting up r-bioc-snpstats (1.52.0+dfsg-1) ... 714s Setting up texlive-bibtex-extra (2023.20240207-1) ... 714s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 714s Setting up r-cran-httr (1.4.7+dfsg-1) ... 714s Setting up r-cran-hms (1.1.3-1) ... 714s Setting up r-cran-memoise (2.0.1-1) ... 714s Setting up r-cran-promises (1.2.1+dfsg-1) ... 714s Setting up r-cran-purrr (1.0.2-1) ... 714s Setting up r-cran-blob (1.2.4-1) ... 714s Setting up r-cran-htmltools (0.5.7-1) ... 714s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 714s Setting up r-bioc-xvector (0.42.0-1) ... 714s Setting up r-cran-sass (0.4.8+dfsg-1) ... 714s Setting up r-cran-dplyr (1.1.4-1) ... 714s Setting up r-cran-rsqlite (2.3.4-1) ... 714s Setting up r-cran-progress (1.2.3-1) ... 714s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 714s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 714s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 714s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 714s Setting up r-cran-fontawesome (0.5.2-1) ... 714s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 714s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 714s Setting up r-cran-tidyr (1.3.1-1) ... 714s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 714s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 714s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 714s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 714s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 714s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 714s Setting up r-bioc-annotationdbi (1.64.1-1) ... 714s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 714s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 714s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 714s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 714s Setting up r-bioc-genefilter (1.84.0-1) ... 714s Setting up r-bioc-genomicalignments (1.38.2-1) ... 714s Setting up r-cran-bookdown (0.37+dfsg-1) ... 714s Setting up r-bioc-rtracklayer (1.62.0-1) ... 714s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 714s Setting up r-bioc-bsgenome (1.70.2-1) ... 714s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 714s Setting up r-bioc-variantannotation (1.48.1-1) ... 714s Setting up r-bioc-genomicfiles (1.38.0+dfsg-1) ... 714s Processing triggers for man-db (2.12.0-3) ... 716s Processing triggers for install-info (7.1-3) ... 716s Processing triggers for libc-bin (2.39-0ubuntu2) ... 716s Processing triggers for tex-common (6.18) ... 716s Running updmap-sys. This may take some time... done. 716s Running mktexlsr /var/lib/texmf ... done. 716s Building format(s) --all. 746s This may take some time... done. 750s Reading package lists... 751s Building dependency tree... 751s Reading state information... 751s Starting pkgProblemResolver with broken count: 0 751s Starting 2 pkgProblemResolver with broken count: 0 751s Done 751s The following NEW packages will be installed: 751s autopkgtest-satdep 751s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 751s Need to get 0 B/700 B of archives. 751s After this operation, 0 B of additional disk space will be used. 751s Get:1 /tmp/autopkgtest.U2tGIy/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 752s Selecting previously unselected package autopkgtest-satdep. 752s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121382 files and directories currently installed.) 752s Preparing to unpack .../2-autopkgtest-satdep.deb ... 752s Unpacking autopkgtest-satdep (0) ... 752s Setting up autopkgtest-satdep (0) ... 753s (Reading database ... 121382 files and directories currently installed.) 753s Removing autopkgtest-satdep (0) ... 754s autopkgtest [13:13:13]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 754s autopkgtest [13:13:13]: test pkg-r-autopkgtest: [----------------------- 754s Test: Try to load the R library GenomicFiles 754s 754s R version 4.3.2 (2023-10-31) -- "Eye Holes" 754s Copyright (C) 2023 The R Foundation for Statistical Computing 754s Platform: x86_64-pc-linux-gnu (64-bit) 754s 754s R is free software and comes with ABSOLUTELY NO WARRANTY. 754s You are welcome to redistribute it under certain conditions. 754s Type 'license()' or 'licence()' for distribution details. 754s 754s R is a collaborative project with many contributors. 754s Type 'contributors()' for more information and 754s 'citation()' on how to cite R or R packages in publications. 754s 754s Type 'demo()' for some demos, 'help()' for on-line help, or 754s 'help.start()' for an HTML browser interface to help. 754s Type 'q()' to quit R. 754s 754s > library('GenomicFiles') 754s Loading required package: BiocGenerics 754s 754s Attaching package: ‘BiocGenerics’ 754s 754s The following objects are masked from ‘package:stats’: 754s 754s IQR, mad, sd, var, xtabs 754s 754s The following objects are masked from ‘package:base’: 754s 754s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 754s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 754s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 754s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 754s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 754s table, tapply, union, unique, unsplit, which.max, which.min 754s 754s Loading required package: MatrixGenerics 754s Loading required package: matrixStats 754s 754s Attaching package: ‘MatrixGenerics’ 754s 754s The following objects are masked from ‘package:matrixStats’: 754s 754s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 754s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 754s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 754s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 754s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 754s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 754s colWeightedMeans, colWeightedMedians, colWeightedSds, 754s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 754s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 754s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 754s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 754s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 754s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 754s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 754s rowWeightedSds, rowWeightedVars 754s 754s Loading required package: GenomicRanges 754s Loading required package: stats4 754s Loading required package: S4Vectors 755s 755s Attaching package: ‘S4Vectors’ 755s 755s The following object is masked from ‘package:utils’: 755s 755s findMatches 755s 755s The following objects are masked from ‘package:base’: 755s 755s expand.grid, I, unname 755s 755s Loading required package: IRanges 755s Loading required package: GenomeInfoDb 756s Loading required package: SummarizedExperiment 756s Loading required package: Biobase 756s Welcome to Bioconductor 756s 756s Vignettes contain introductory material; view with 756s 'browseVignettes()'. To cite Bioconductor, see 756s 'citation("Biobase")', and for packages 'citation("pkgname")'. 756s 756s 756s Attaching package: ‘Biobase’ 756s 756s The following object is masked from ‘package:MatrixGenerics’: 756s 756s rowMedians 756s 756s The following objects are masked from ‘package:matrixStats’: 756s 756s anyMissing, rowMedians 756s 759s Loading required package: BiocParallel 759s Loading required package: Rsamtools 759s Loading required package: Biostrings 759s Loading required package: XVector 760s 760s Attaching package: ‘Biostrings’ 760s 760s The following object is masked from ‘package:base’: 760s 760s strsplit 760s 760s Loading required package: rtracklayer 765s > 765s > 765s Other tests are currently unsupported! 765s They will be progressively added. 766s autopkgtest [13:13:25]: test pkg-r-autopkgtest: -----------------------] 766s autopkgtest [13:13:25]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 766s pkg-r-autopkgtest PASS 766s autopkgtest [13:13:25]: @@@@@@@@@@@@@@@@@@@@ summary 766s pkg-r-autopkgtest PASS