0s autopkgtest [13:05:51]: starting date and time: 2024-03-21 13:05:51+0000 0s autopkgtest [13:05:51]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [13:05:51]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.w5r0pvm3/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-bioc-variantannotation --apt-upgrade r-bioc-genomicfiles --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-bioc-variantannotation/1.48.1-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-1.secgroup --name adt-noble-i386-r-bioc-genomicfiles-20240321-130551-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 111s autopkgtest [13:07:42]: testbed dpkg architecture: amd64 111s autopkgtest [13:07:42]: testbed apt version: 2.7.12 111s autopkgtest [13:07:42]: test architecture: i386 111s autopkgtest [13:07:42]: @@@@@@@@@@@@@@@@@@@@ test bed setup 112s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 112s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 112s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 112s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 112s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3774 kB] 112s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [460 kB] 112s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [696 kB] 112s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 112s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 112s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 112s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 112s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1273 kB] 112s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4238 kB] 112s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 112s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 112s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 112s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 115s Fetched 11.3 MB in 1s (7861 kB/s) 115s Reading package lists... 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s Calculating upgrade... 118s The following packages will be upgraded: 118s debianutils linux-firmware 118s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s Need to get 476 MB of archives. 118s After this operation, 5724 kB of additional disk space will be used. 118s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.17 [89.8 kB] 118s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-firmware amd64 20240318.git3b128b60-0ubuntu1 [475 MB] 121s Fetched 476 MB in 3s (145 MB/s) 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 121s Preparing to unpack .../debianutils_5.17_amd64.deb ... 121s Unpacking debianutils (5.17) over (5.16) ... 121s Setting up debianutils (5.17) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 122s Preparing to unpack .../linux-firmware_20240318.git3b128b60-0ubuntu1_amd64.deb ... 122s Unpacking linux-firmware (20240318.git3b128b60-0ubuntu1) over (20240202.git36777504-0ubuntu1) ... 124s Setting up linux-firmware (20240318.git3b128b60-0ubuntu1) ... 124s Processing triggers for man-db (2.12.0-3) ... 126s Processing triggers for initramfs-tools (0.142ubuntu20) ... 126s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 126s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 133s Reading package lists... 134s Building dependency tree... 134s Reading state information... 134s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s sh: Attempting to set up Debian/Ubuntu apt sources automatically 134s sh: Distribution appears to be Ubuntu 135s Reading package lists... 136s Building dependency tree... 136s Reading state information... 136s eatmydata is already the newest version (131-1). 136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 136s dbus is already the newest version (1.14.10-4ubuntu1). 136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 136s Reading package lists... 137s Building dependency tree... 137s Reading state information... 137s rng-tools-debian is already the newest version (2.4). 137s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 137s Reading package lists... 137s Building dependency tree... 137s Reading state information... 138s The following packages will be REMOVED: 138s cloud-init* python3-configobj* python3-debconf* 138s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 138s After this operation, 3252 kB disk space will be freed. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 138s Removing cloud-init (24.1.1-0ubuntu1) ... 139s Removing python3-configobj (5.0.8-3) ... 139s Removing python3-debconf (1.5.86) ... 139s Processing triggers for man-db (2.12.0-3) ... 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71476 files and directories currently installed.) 139s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 140s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 140s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 140s invoke-rc.d: policy-rc.d denied execution of try-restart. 140s Reading package lists... 140s Building dependency tree... 140s Reading state information... 140s linux-generic is already the newest version (6.8.0-11.11+1). 140s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 141s Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] 141s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 141s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 142s Fetched 255 kB in 0s (895 kB/s) 143s Reading package lists... 143s Reading package lists... 143s Building dependency tree... 143s Reading state information... 144s Calculating upgrade... 144s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 145s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 145s autopkgtest [13:08:16]: rebooting testbed after setup commands that affected boot 173s autopkgtest [13:08:44]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 173s autopkgtest [13:08:44]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicfiles 174s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (dsc) [2416 B] 174s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (tar) [291 kB] 174s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (diff) [5272 B] 174s gpgv: Signature made Fri Dec 1 10:41:34 2023 UTC 174s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 174s gpgv: issuer "tillea@rki.de" 174s gpgv: Can't check signature: No public key 174s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicfiles_1.38.0+dfsg-1.dsc: no acceptable signature found 175s autopkgtest [13:08:46]: testing package r-bioc-genomicfiles version 1.38.0+dfsg-1 175s autopkgtest [13:08:46]: build not needed 175s autopkgtest [13:08:46]: test pkg-r-autopkgtest: preparing testbed 182s Note, using file '/tmp/autopkgtest.8Kb8Uf/1-autopkgtest-satdep.dsc' to get the build dependencies 182s Reading package lists... 182s Building dependency tree... 182s Reading state information... 182s Starting pkgProblemResolver with broken count: 0 182s Starting 2 pkgProblemResolver with broken count: 0 182s Done 183s The following NEW packages will be installed: 183s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 183s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 183s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 183s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 183s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 183s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 183s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 183s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 183s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 183s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 183s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 183s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 183s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 183s libjs-highlight.js libjs-jquery libjs-jquery-datatables 183s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 183s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 183s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 183s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 183s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 183s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 183s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 183s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 183s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 183s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 183s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 183s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 183s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 183s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 183s r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase 183s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 183s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 183s r-bioc-delayedarray r-bioc-genefilter r-bioc-genomeinfodb 183s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 183s r-bioc-genomicfiles r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 183s r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 183s r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats r-bioc-sparsearray 183s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 183s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 183s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 183s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools 183s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 183s r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 183s r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome 183s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 183s r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools 183s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 183s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 183s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 183s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 183s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 183s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 183s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 183s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 183s r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr 183s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 183s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 183s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 183s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 183s 0 upgraded, 282 newly installed, 0 to remove and 0 not upgraded. 183s Need to get 450 MB of archives. 183s After this operation, 1378 MB of additional disk space will be used. 183s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 183s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 183s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 183s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 183s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 183s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 183s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 183s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 183s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 183s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 183s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 183s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 183s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 183s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 183s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 183s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 183s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 183s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 183s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 183s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 183s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 183s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 183s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 183s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 183s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 183s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 183s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 183s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 183s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 183s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 183s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 183s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 183s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 183s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 183s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 183s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 183s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 183s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 183s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 183s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 183s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 183s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 183s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 183s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 183s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 183s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 183s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 184s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 184s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 184s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 184s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 184s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 184s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 184s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 184s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 184s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 184s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 184s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 184s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 184s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 184s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 184s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 184s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 184s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 184s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 184s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 184s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 184s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 184s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 184s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 184s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 184s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 184s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 184s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 184s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 184s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 184s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 184s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 184s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 184s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 184s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 184s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 184s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 184s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 184s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 184s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 184s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 184s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 184s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 184s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 184s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 184s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 184s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 184s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 184s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 184s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 184s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 184s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 184s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 184s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 184s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 184s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 184s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 184s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 184s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 184s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 184s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 184s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 184s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 184s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 184s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 184s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 184s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 184s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 184s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 184s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 184s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 184s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 184s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 184s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 184s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 184s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 184s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 184s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 184s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 184s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 184s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 184s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 184s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 184s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 184s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 184s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 184s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 184s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 184s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 184s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 184s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 184s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 184s Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 184s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 184s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 184s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 184s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 184s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 184s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 184s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 184s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 184s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 184s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 184s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 184s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 184s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 184s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 184s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 184s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 184s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 184s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 184s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 184s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 184s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 184s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 184s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 184s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 184s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 184s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 184s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 184s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 184s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 184s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 184s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 184s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 184s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 184s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 184s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 184s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 184s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 184s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 184s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 184s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 184s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 184s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 184s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 184s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 184s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 184s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 185s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 185s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 185s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 185s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 185s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 185s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 185s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 185s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 185s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 185s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 185s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 185s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 185s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 185s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 185s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 185s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 185s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 185s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 185s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 185s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 185s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 185s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 185s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 185s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 185s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 185s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 185s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 185s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 185s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 185s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 185s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 185s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 185s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 185s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 185s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 185s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 185s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 185s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 185s Get:224 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 185s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 185s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 185s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 185s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 185s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 185s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 185s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 185s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 185s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 185s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 185s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 185s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 185s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 185s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 185s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 185s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 185s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 185s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 185s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 185s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 185s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 185s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 185s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 185s Get:248 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 185s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 185s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 185s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 185s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 186s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 186s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 186s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 186s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 186s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 186s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 186s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 186s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 186s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 186s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 186s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 186s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 186s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 186s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 186s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 186s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 186s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 186s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 186s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 186s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 186s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 186s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 186s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 186s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 186s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genefilter amd64 1.84.0-1 [1123 kB] 186s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 186s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-variantannotation amd64 1.48.1-1 [3527 kB] 186s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfiles all 1.38.0+dfsg-1 [532 kB] 186s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-snpstats amd64 1.52.0+dfsg-1 [7242 kB] 186s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-runit all 0.4.32-3 [283 kB] 187s Preconfiguring packages ... 187s Fetched 450 MB in 3s (148 MB/s) 187s Selecting previously unselected package libc-dev-bin. 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71421 files and directories currently installed.) 187s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 187s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 187s Selecting previously unselected package linux-libc-dev:amd64. 187s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 187s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 187s Selecting previously unselected package libcrypt-dev:amd64. 187s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 187s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 187s Selecting previously unselected package libtirpc-dev:amd64. 187s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 187s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 187s Selecting previously unselected package libnsl-dev:amd64. 187s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 187s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 187s Selecting previously unselected package rpcsvc-proto. 187s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 187s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 187s Selecting previously unselected package libc6-dev:amd64. 187s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 187s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 187s Selecting previously unselected package libisl23:amd64. 187s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 187s Unpacking libisl23:amd64 (0.26-3) ... 187s Selecting previously unselected package libmpc3:amd64. 187s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 187s Unpacking libmpc3:amd64 (1.3.1-1) ... 187s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 187s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 187s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 188s Selecting previously unselected package cpp-13. 188s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 188s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 188s Selecting previously unselected package cpp-x86-64-linux-gnu. 188s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 188s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 188s Selecting previously unselected package cpp. 188s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 188s Unpacking cpp (4:13.2.0-7ubuntu1) ... 188s Selecting previously unselected package libcc1-0:amd64. 188s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 188s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 188s Selecting previously unselected package libgomp1:amd64. 188s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 188s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 188s Selecting previously unselected package libitm1:amd64. 188s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 188s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 188s Selecting previously unselected package libatomic1:amd64. 188s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 188s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 188s Selecting previously unselected package libasan8:amd64. 188s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 188s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 188s Selecting previously unselected package liblsan0:amd64. 188s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 188s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 188s Selecting previously unselected package libtsan2:amd64. 188s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 188s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 188s Selecting previously unselected package libubsan1:amd64. 188s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 188s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 188s Selecting previously unselected package libhwasan0:amd64. 188s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 188s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 189s Selecting previously unselected package libquadmath0:amd64. 189s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 189s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 189s Selecting previously unselected package libgcc-13-dev:amd64. 189s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 189s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 189s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 189s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 189s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 189s Selecting previously unselected package gcc-13. 189s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 189s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 189s Selecting previously unselected package gcc-x86-64-linux-gnu. 189s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 189s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 189s Selecting previously unselected package gcc. 189s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 189s Unpacking gcc (4:13.2.0-7ubuntu1) ... 189s Selecting previously unselected package libstdc++-13-dev:amd64. 189s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 189s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 189s Selecting previously unselected package g++-13-x86-64-linux-gnu. 189s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 189s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 189s Selecting previously unselected package g++-13. 189s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 189s Unpacking g++-13 (13.2.0-17ubuntu2) ... 189s Selecting previously unselected package g++-x86-64-linux-gnu. 189s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 189s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 189s Selecting previously unselected package g++. 189s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 189s Unpacking g++ (4:13.2.0-7ubuntu1) ... 189s Selecting previously unselected package build-essential. 189s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 189s Unpacking build-essential (12.10ubuntu1) ... 189s Selecting previously unselected package dctrl-tools. 189s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 189s Unpacking dctrl-tools (2.24-3build2) ... 189s Selecting previously unselected package fonts-dejavu-mono. 189s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 189s Unpacking fonts-dejavu-mono (2.37-8) ... 189s Selecting previously unselected package fonts-dejavu-core. 189s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 189s Unpacking fonts-dejavu-core (2.37-8) ... 189s Selecting previously unselected package fontconfig-config. 189s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 190s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 190s Selecting previously unselected package libfontconfig1:amd64. 190s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 190s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 190s Selecting previously unselected package fontconfig. 190s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 190s Unpacking fontconfig (2.15.0-1ubuntu1) ... 190s Selecting previously unselected package fonts-font-awesome. 190s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 190s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 190s Selecting previously unselected package fonts-glyphicons-halflings. 190s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 190s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 190s Selecting previously unselected package fonts-lmodern. 190s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 190s Unpacking fonts-lmodern (2.005-1) ... 190s Selecting previously unselected package fonts-mathjax. 190s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 190s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 190s Selecting previously unselected package libgfortran5:amd64. 190s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 190s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 190s Selecting previously unselected package libgfortran-13-dev:amd64. 190s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 190s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 190s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 190s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 190s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 190s Selecting previously unselected package gfortran-13. 190s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 190s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 190s Selecting previously unselected package gfortran-x86-64-linux-gnu. 190s Preparing to unpack .../048-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 190s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 190s Selecting previously unselected package gfortran. 190s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 190s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 190s Selecting previously unselected package icu-devtools. 190s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_amd64.deb ... 190s Unpacking icu-devtools (74.2-1ubuntu1) ... 190s Selecting previously unselected package javascript-common. 190s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 190s Unpacking javascript-common (11+nmu1) ... 190s Selecting previously unselected package libio-string-perl. 190s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 190s Unpacking libio-string-perl (1.08-4) ... 191s Selecting previously unselected package liblatex-tounicode-perl. 191s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 191s Unpacking liblatex-tounicode-perl (0.54-2) ... 191s Selecting previously unselected package libbibtex-parser-perl. 191s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 191s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 191s Selecting previously unselected package libblas3:amd64. 191s Preparing to unpack .../055-libblas3_3.12.0-3_amd64.deb ... 191s Unpacking libblas3:amd64 (3.12.0-3) ... 191s Selecting previously unselected package libblas-dev:amd64. 191s Preparing to unpack .../056-libblas-dev_3.12.0-3_amd64.deb ... 191s Unpacking libblas-dev:amd64 (3.12.0-3) ... 191s Selecting previously unselected package libboost1.83-dev:amd64. 191s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 191s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 193s Selecting previously unselected package libboost-dev:amd64. 193s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 193s Unpacking libboost-dev:amd64 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previously unselected package libpangoft2-1.0-0:amd64. 195s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 195s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 195s Selecting previously unselected package libpangocairo-1.0-0:amd64. 195s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 195s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 195s Selecting previously unselected package libpaper1:amd64. 195s Preparing to unpack .../103-libpaper1_1.1.29_amd64.deb ... 195s Unpacking libpaper1:amd64 (1.1.29) ... 195s Selecting previously unselected package libpaper-utils. 195s Preparing to unpack .../104-libpaper-utils_1.1.29_amd64.deb ... 195s Unpacking libpaper-utils (1.1.29) ... 195s Selecting previously unselected package libpcre2-16-0:amd64. 195s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 195s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 195s Selecting previously unselected package 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package r-bioc-s4vectors. 198s Preparing to unpack .../150-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 198s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 198s Selecting previously unselected package r-bioc-iranges. 198s Preparing to unpack .../151-r-bioc-iranges_2.36.0-1_amd64.deb ... 198s Unpacking r-bioc-iranges (2.36.0-1) ... 198s Selecting previously unselected package r-cran-dbi. 198s Preparing to unpack .../152-r-cran-dbi_1.2.2-1_all.deb ... 198s Unpacking r-cran-dbi (1.2.2-1) ... 198s Selecting previously unselected package r-cran-bit. 198s Preparing to unpack .../153-r-cran-bit_4.0.5-1_amd64.deb ... 198s Unpacking r-cran-bit (4.0.5-1) ... 198s Selecting previously unselected package r-cran-bit64. 198s Preparing to unpack .../154-r-cran-bit64_4.0.5-1_amd64.deb ... 198s Unpacking r-cran-bit64 (4.0.5-1) ... 198s Selecting previously unselected package r-cran-rlang. 198s Preparing to unpack .../155-r-cran-rlang_1.1.3-1_amd64.deb ... 198s Unpacking r-cran-rlang (1.1.3-1) ... 198s Selecting previously unselected package r-cran-cli. 198s Preparing to unpack .../156-r-cran-cli_3.6.2-1_amd64.deb ... 198s Unpacking r-cran-cli (3.6.2-1) ... 198s Selecting previously unselected package r-cran-glue. 198s Preparing to unpack .../157-r-cran-glue_1.7.0-1_amd64.deb ... 198s Unpacking r-cran-glue (1.7.0-1) ... 198s Selecting previously unselected package r-cran-lifecycle. 198s Preparing to unpack .../158-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 198s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 198s Selecting previously unselected package r-cran-vctrs. 198s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_amd64.deb ... 198s Unpacking r-cran-vctrs (0.6.5-1) ... 198s Selecting previously unselected package r-cran-blob. 198s Preparing to unpack .../160-r-cran-blob_1.2.4-1_all.deb ... 198s Unpacking r-cran-blob (1.2.4-1) ... 198s Selecting previously unselected package r-cran-fastmap. 198s Preparing to unpack .../161-r-cran-fastmap_1.1.1-1_amd64.deb ... 198s Unpacking r-cran-fastmap (1.1.1-1) ... 198s Selecting previously unselected package r-cran-cachem. 198s Preparing to unpack .../162-r-cran-cachem_1.0.8-1_amd64.deb ... 198s Unpacking r-cran-cachem (1.0.8-1) ... 198s Selecting previously unselected package r-cran-memoise. 198s Preparing to unpack .../163-r-cran-memoise_2.0.1-1_all.deb ... 198s Unpacking r-cran-memoise (2.0.1-1) ... 198s Selecting previously unselected package r-cran-pkgconfig. 198s Preparing to unpack .../164-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 198s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 198s Selecting previously unselected package r-cran-plogr. 198s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build1_all.deb ... 198s Unpacking r-cran-plogr (0.2.0-3build1) ... 198s Selecting previously unselected package r-cran-cpp11. 198s Preparing to unpack .../166-r-cran-cpp11_0.4.7-1_all.deb ... 198s Unpacking r-cran-cpp11 (0.4.7-1) ... 198s Selecting previously unselected package r-cran-rsqlite. 198s Preparing to unpack .../167-r-cran-rsqlite_2.3.4-1_amd64.deb ... 198s Unpacking r-cran-rsqlite (2.3.4-1) ... 198s Selecting previously unselected package r-cran-curl. 198s Preparing to unpack .../168-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 198s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 199s Selecting previously unselected package r-cran-jsonlite. 199s Preparing to unpack .../169-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 199s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 199s Selecting previously unselected package r-cran-mime. 199s Preparing to unpack .../170-r-cran-mime_0.12-1_amd64.deb ... 199s Unpacking r-cran-mime (0.12-1) ... 199s Selecting previously unselected package r-cran-sys. 199s Preparing to unpack .../171-r-cran-sys_3.4.2-1_amd64.deb ... 199s Unpacking r-cran-sys (3.4.2-1) ... 199s Selecting previously unselected package r-cran-askpass. 199s Preparing to unpack .../172-r-cran-askpass_1.2.0-1_amd64.deb ... 199s Unpacking r-cran-askpass (1.2.0-1) ... 199s Selecting previously unselected package r-cran-openssl. 199s Preparing to unpack .../173-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 199s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 199s Selecting previously unselected package r-cran-r6. 199s Preparing to unpack .../174-r-cran-r6_2.5.1-1_all.deb ... 199s Unpacking r-cran-r6 (2.5.1-1) ... 199s Selecting previously unselected package r-cran-httr. 199s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ... 199s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 199s Selecting previously unselected package r-cran-png. 199s Preparing to unpack .../176-r-cran-png_0.1-8-1_amd64.deb ... 199s Unpacking r-cran-png (0.1-8-1) ... 199s Selecting previously unselected package r-bioc-zlibbioc. 199s Preparing to unpack .../177-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 199s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 199s Selecting previously unselected package r-bioc-xvector. 199s Preparing to unpack .../178-r-bioc-xvector_0.42.0-1_amd64.deb ... 199s Unpacking r-bioc-xvector (0.42.0-1) ... 199s Selecting previously unselected package r-cran-bitops. 199s Preparing to unpack .../179-r-cran-bitops_1.0-7-1_amd64.deb ... 199s Unpacking r-cran-bitops (1.0-7-1) ... 199s Selecting previously unselected package r-cran-rcurl. 199s Preparing to unpack .../180-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 199s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 199s Selecting previously unselected package r-bioc-genomeinfodbdata. 199s Preparing to unpack .../181-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 199s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 199s Selecting previously unselected package r-bioc-genomeinfodb. 199s Preparing to unpack .../182-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 199s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 199s Selecting previously unselected package r-cran-crayon. 199s Preparing to unpack .../183-r-cran-crayon_1.5.2-1_all.deb ... 199s Unpacking r-cran-crayon (1.5.2-1) ... 199s Selecting previously unselected package r-bioc-biostrings. 199s Preparing to unpack .../184-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 199s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 199s Selecting previously unselected package r-bioc-keggrest. 199s Preparing to unpack .../185-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 199s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 199s Selecting previously unselected package r-bioc-annotationdbi. 199s Preparing to unpack .../186-r-bioc-annotationdbi_1.64.1-1_all.deb ... 199s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 199s Selecting previously unselected package r-cran-xml. 199s Preparing to unpack .../187-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 199s Unpacking r-cran-xml (3.99-0.16.1-1) ... 199s Selecting previously unselected package r-cran-xtable. 200s Preparing to unpack .../188-r-cran-xtable_1%3a1.8-4-2_all.deb ... 200s Unpacking r-cran-xtable (1:1.8-4-2) ... 200s Selecting previously unselected package r-bioc-annotate. 200s Preparing to unpack .../189-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 200s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 200s Selecting previously unselected package r-cran-generics. 200s Preparing to unpack .../190-r-cran-generics_0.1.3-1_all.deb ... 200s Unpacking r-cran-generics (0.1.3-1) ... 200s Selecting previously unselected package r-cran-magrittr. 200s Preparing to unpack .../191-r-cran-magrittr_2.0.3-1_amd64.deb ... 200s Unpacking r-cran-magrittr (2.0.3-1) ... 200s Selecting previously unselected package r-cran-fansi. 200s Preparing to unpack .../192-r-cran-fansi_1.0.5-1_amd64.deb ... 200s Unpacking r-cran-fansi (1.0.5-1) ... 200s Selecting previously unselected package r-cran-utf8. 200s Preparing to unpack .../193-r-cran-utf8_1.2.4-1_amd64.deb ... 200s Unpacking r-cran-utf8 (1.2.4-1) ... 200s Selecting previously unselected package r-cran-pillar. 200s Preparing to unpack .../194-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 200s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 200s Selecting previously unselected package r-cran-tibble. 200s Preparing to unpack .../195-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 200s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 200s Selecting previously unselected package r-cran-withr. 200s Preparing to unpack .../196-r-cran-withr_2.5.0-1_all.deb ... 200s Unpacking r-cran-withr (2.5.0-1) ... 200s Selecting previously unselected package r-cran-tidyselect. 200s Preparing to unpack .../197-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 200s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 200s Selecting previously unselected package r-cran-dplyr. 200s Preparing to unpack .../198-r-cran-dplyr_1.1.4-1_amd64.deb ... 200s Unpacking r-cran-dplyr (1.1.4-1) ... 200s Selecting previously unselected package r-cran-purrr. 200s Preparing to unpack .../199-r-cran-purrr_1.0.2-1_amd64.deb ... 200s Unpacking r-cran-purrr (1.0.2-1) ... 200s Selecting previously unselected package r-cran-stringi. 200s Preparing to unpack .../200-r-cran-stringi_1.8.3-1_amd64.deb ... 200s Unpacking r-cran-stringi (1.8.3-1) ... 200s Selecting previously unselected package r-cran-stringr. 200s Preparing to unpack .../201-r-cran-stringr_1.5.1-1_all.deb ... 200s Unpacking r-cran-stringr (1.5.1-1) ... 200s Selecting previously unselected package r-cran-tidyr. 200s Preparing to unpack .../202-r-cran-tidyr_1.3.1-1_amd64.deb ... 200s Unpacking r-cran-tidyr (1.3.1-1) ... 200s Selecting previously unselected package r-cran-dbplyr. 200s Preparing to unpack .../203-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 200s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 200s Selecting previously unselected package r-cran-filelock. 200s Preparing to unpack .../204-r-cran-filelock_1.0.3-1_amd64.deb ... 200s Unpacking r-cran-filelock (1.0.3-1) ... 200s Selecting previously unselected package r-bioc-biocfilecache. 200s Preparing to unpack .../205-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 200s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 200s Selecting previously unselected package r-bioc-biocio. 200s Preparing to unpack .../206-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 200s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 200s Selecting previously unselected package r-cran-formatr. 200s Preparing to unpack .../207-r-cran-formatr_1.14-1_all.deb ... 200s Unpacking r-cran-formatr (1.14-1) ... 200s Selecting previously unselected package r-cran-lambda.r. 200s Preparing to unpack .../208-r-cran-lambda.r_1.2.4-2build1_all.deb ... 200s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 200s Selecting previously unselected package r-cran-futile.options. 200s Preparing to unpack .../209-r-cran-futile.options_1.0.1-3build1_all.deb ... 200s Unpacking r-cran-futile.options (1.0.1-3build1) ... 200s Selecting previously unselected package r-cran-futile.logger. 200s Preparing to unpack .../210-r-cran-futile.logger_1.4.3-4build1_all.deb ... 200s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 201s Selecting previously unselected package r-cran-snow. 201s Preparing to unpack .../211-r-cran-snow_1%3a0.4.4-2_all.deb ... 201s Unpacking r-cran-snow (1:0.4.4-2) ... 201s Selecting previously unselected package r-cran-codetools. 201s Preparing to unpack .../212-r-cran-codetools_0.2-19-1_all.deb ... 201s Unpacking r-cran-codetools (0.2-19-1) ... 201s Selecting previously unselected package r-cran-bh. 201s Preparing to unpack .../213-r-cran-bh_1.84.0-1_all.deb ... 201s Unpacking r-cran-bh (1.84.0-1) ... 201s Selecting previously unselected package r-bioc-biocparallel. 201s Preparing to unpack .../214-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 201s Unpacking r-bioc-biocparallel (1.36.0-1) ... 201s Selecting previously unselected package r-cran-base64enc. 201s Preparing to unpack .../215-r-cran-base64enc_0.1-3-3_amd64.deb ... 201s Unpacking r-cran-base64enc (0.1-3-3) ... 201s Selecting previously unselected package r-cran-digest. 201s Preparing to unpack .../216-r-cran-digest_0.6.34-1_amd64.deb ... 201s Unpacking r-cran-digest (0.6.34-1) ... 201s Selecting previously unselected package r-cran-ellipsis. 201s Preparing to unpack .../217-r-cran-ellipsis_0.3.2-2_amd64.deb ... 201s Unpacking r-cran-ellipsis (0.3.2-2) ... 201s Selecting previously unselected package r-cran-htmltools. 201s Preparing to unpack .../218-r-cran-htmltools_0.5.7-1_amd64.deb ... 201s Unpacking r-cran-htmltools (0.5.7-1) ... 201s Selecting previously unselected package r-cran-evaluate. 201s Preparing to unpack .../219-r-cran-evaluate_0.23-1_all.deb ... 201s Unpacking r-cran-evaluate (0.23-1) ... 201s Selecting previously unselected package r-cran-xfun. 201s Preparing to unpack .../220-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 201s Unpacking r-cran-xfun (0.41+dfsg-1) ... 201s Selecting previously unselected package r-cran-highr. 201s Preparing to unpack .../221-r-cran-highr_0.10+dfsg-1_all.deb ... 201s Unpacking r-cran-highr (0.10+dfsg-1) ... 201s Selecting previously unselected package r-cran-yaml. 201s Preparing to unpack .../222-r-cran-yaml_2.3.8-1_amd64.deb ... 201s Unpacking r-cran-yaml (2.3.8-1) ... 201s Selecting previously unselected package libjs-mathjax. 201s Preparing to unpack .../223-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 201s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 202s Selecting previously unselected package r-cran-knitr. 202s Preparing to unpack .../224-r-cran-knitr_1.45+dfsg-1_all.deb ... 202s Unpacking r-cran-knitr (1.45+dfsg-1) ... 202s Selecting previously unselected package r-cran-jquerylib. 202s Preparing to unpack .../225-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 202s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 202s Selecting previously unselected package r-cran-fs. 202s Preparing to unpack .../226-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 202s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 202s Selecting previously unselected package r-cran-rappdirs. 202s Preparing to unpack .../227-r-cran-rappdirs_0.3.3-1_amd64.deb ... 202s Unpacking r-cran-rappdirs (0.3.3-1) ... 202s Selecting previously unselected package r-cran-sass. 202s Preparing to unpack .../228-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 202s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 202s Selecting previously unselected package r-cran-bslib. 202s Preparing to unpack .../229-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 202s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 202s Selecting previously unselected package r-cran-fontawesome. 202s Preparing to unpack .../230-r-cran-fontawesome_0.5.2-1_all.deb ... 202s Unpacking r-cran-fontawesome (0.5.2-1) ... 202s Selecting previously unselected package r-cran-tinytex. 202s Preparing to unpack .../231-r-cran-tinytex_0.49-1_all.deb ... 202s Unpacking r-cran-tinytex (0.49-1) ... 202s Selecting previously unselected package libjs-modernizr. 202s Preparing to unpack .../232-libjs-modernizr_2.6.2+ds1-5_all.deb ... 202s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 202s Selecting previously unselected package r-cran-littler. 202s Preparing to unpack .../233-r-cran-littler_0.3.19-1_amd64.deb ... 202s Unpacking r-cran-littler (0.3.19-1) ... 202s Selecting previously unselected package r-cran-pkgkitten. 202s Preparing to unpack .../234-r-cran-pkgkitten_0.2.3-1_all.deb ... 202s Unpacking r-cran-pkgkitten (0.2.3-1) ... 202s Selecting previously unselected package r-cran-rcpp. 202s Preparing to unpack .../235-r-cran-rcpp_1.0.12-1_amd64.deb ... 202s Unpacking r-cran-rcpp (1.0.12-1) ... 202s Selecting previously unselected package r-cran-later. 202s Preparing to unpack .../236-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 202s Unpacking r-cran-later (1.3.2+dfsg-1) ... 202s Selecting previously unselected package r-cran-promises. 202s Preparing to unpack .../237-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 202s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 202s Selecting previously unselected package r-cran-httpuv. 203s Preparing to unpack .../238-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 203s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 203s Selecting previously unselected package r-cran-sourcetools. 203s Preparing to unpack .../239-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 203s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 203s Selecting previously unselected package r-cran-commonmark. 203s Preparing to unpack .../240-r-cran-commonmark_1.9.1-1_amd64.deb ... 203s Unpacking r-cran-commonmark (1.9.1-1) ... 203s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 203s Preparing to unpack .../241-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 203s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 203s Selecting previously unselected package r-cran-shiny. 203s Preparing to unpack .../242-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 203s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 203s Selecting previously unselected package r-cran-rmarkdown. 203s Preparing to unpack .../243-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 203s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 203s Selecting previously unselected package r-cran-bookdown. 203s Preparing to unpack .../244-r-cran-bookdown_0.37+dfsg-1_all.deb ... 203s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 203s Selecting previously unselected package r-cran-biocmanager. 203s Preparing to unpack .../245-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 203s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 203s Selecting previously unselected package tex-common. 203s Preparing to unpack .../246-tex-common_6.18_all.deb ... 203s Unpacking tex-common (6.18) ... 203s Selecting previously unselected package t1utils. 203s Preparing to unpack .../247-t1utils_1.41-4build2_amd64.deb ... 203s Unpacking t1utils (1.41-4build2) ... 203s Selecting previously unselected package texlive-binaries. 203s Preparing to unpack .../248-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 203s Unpacking texlive-binaries (2023.20230311.66589-9) ... 203s Selecting previously unselected package texlive-base. 203s Preparing to unpack .../249-texlive-base_2023.20240207-1_all.deb ... 203s Unpacking texlive-base (2023.20240207-1) ... 205s Selecting previously unselected package texlive-latex-base. 205s Preparing to unpack .../250-texlive-latex-base_2023.20240207-1_all.deb ... 205s Unpacking texlive-latex-base (2023.20240207-1) ... 205s Selecting previously unselected package texlive-bibtex-extra. 205s Preparing to unpack .../251-texlive-bibtex-extra_2023.20240207-1_all.deb ... 205s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 208s Selecting previously unselected package r-bioc-biocstyle. 208s Preparing to unpack .../252-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 208s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 208s Selecting previously unselected package r-cran-hms. 208s Preparing to unpack .../253-r-cran-hms_1.1.3-1_all.deb ... 208s Unpacking r-cran-hms (1.1.3-1) ... 209s Selecting previously unselected package r-cran-prettyunits. 209s Preparing to unpack .../254-r-cran-prettyunits_1.2.0-1_all.deb ... 209s Unpacking r-cran-prettyunits (1.2.0-1) ... 209s Selecting previously unselected package r-cran-progress. 209s Preparing to unpack .../255-r-cran-progress_1.2.3-1_all.deb ... 209s Unpacking r-cran-progress (1.2.3-1) ... 209s Selecting previously unselected package r-cran-xml2. 209s Preparing to unpack .../256-r-cran-xml2_1.3.6-1_amd64.deb ... 209s Unpacking r-cran-xml2 (1.3.6-1) ... 209s Selecting previously unselected package r-bioc-biomart. 209s Preparing to unpack .../257-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 209s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 209s Selecting previously unselected package r-bioc-genomicranges. 209s Preparing to unpack .../258-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 209s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 209s Selecting previously unselected package r-bioc-rhtslib. 209s Preparing to unpack .../259-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 209s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 209s Selecting previously unselected package r-bioc-rsamtools. 209s Preparing to unpack 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(2023.20240207-1) ... 215s Setting up r-cran-cpp11 (0.4.7-1) ... 215s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 215s Setting up r-cran-runit (0.4.32-3) ... 215s Setting up r-cran-futile.logger (1.4.3-4build1) ... 215s Setting up r-cran-later (1.3.2+dfsg-1) ... 215s Setting up r-cran-matrix (1.6-5-1) ... 215s Setting up r-cran-tinytex (0.49-1) ... 215s Setting up r-cran-knitr (1.45+dfsg-1) ... 215s Setting up g++ (4:13.2.0-7ubuntu1) ... 215s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 215s Setting up r-cran-cachem (1.0.8-1) ... 215s Setting up build-essential (12.10ubuntu1) ... 215s Setting up r-bioc-iranges (2.36.0-1) ... 215s Setting up r-cran-rjson (0.2.21-1) ... 215s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 215s Setting up r-cran-restfulr (0.0.15-1) ... 215s Setting up r-cran-vctrs (0.6.5-1) ... 215s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 215s Setting up r-cran-ellipsis (0.3.2-2) ... 215s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 215s Setting up r-base-dev (4.3.2-1build1) ... 215s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 215s Setting up r-cran-stringr (1.5.1-1) ... 215s Setting up r-bioc-biocparallel (1.36.0-1) ... 215s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 215s Setting up r-cran-xml2 (1.3.6-1) ... 215s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 215s Setting up r-cran-survival (3.5-8-1) ... 215s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 215s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 215s Setting up r-bioc-snpstats (1.52.0+dfsg-1) ... 215s Setting up texlive-bibtex-extra (2023.20240207-1) ... 215s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 215s Setting up r-cran-httr (1.4.7+dfsg-1) ... 215s Setting up r-cran-hms (1.1.3-1) ... 215s Setting up r-cran-memoise (2.0.1-1) ... 215s Setting up r-cran-promises (1.2.1+dfsg-1) ... 215s Setting up r-cran-purrr (1.0.2-1) ... 215s Setting up r-cran-blob (1.2.4-1) ... 215s Setting up r-cran-htmltools (0.5.7-1) ... 215s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 215s Setting up r-bioc-xvector (0.42.0-1) ... 215s Setting up r-cran-sass (0.4.8+dfsg-1) ... 215s Setting up r-cran-dplyr (1.1.4-1) ... 215s Setting up r-cran-rsqlite (2.3.4-1) ... 215s Setting up r-cran-progress (1.2.3-1) ... 215s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 215s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 215s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 215s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 215s Setting up r-cran-fontawesome (0.5.2-1) ... 215s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 215s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 215s Setting up r-cran-tidyr (1.3.1-1) ... 215s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 215s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 215s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 215s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 215s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 215s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 215s Setting up r-bioc-annotationdbi (1.64.1-1) ... 215s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 215s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 215s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 215s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 215s Setting up r-bioc-genefilter (1.84.0-1) ... 215s Setting up r-bioc-genomicalignments (1.38.2-1) ... 215s Setting up r-cran-bookdown (0.37+dfsg-1) ... 215s Setting up r-bioc-rtracklayer (1.62.0-1) ... 215s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 215s Setting up r-bioc-bsgenome (1.70.2-1) ... 215s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 215s Setting up r-bioc-variantannotation (1.48.1-1) ... 215s Setting up r-bioc-genomicfiles (1.38.0+dfsg-1) ... 215s Processing triggers for man-db (2.12.0-3) ... 217s Processing triggers for install-info (7.1-3) ... 217s Processing triggers for libc-bin (2.39-0ubuntu2) ... 217s Processing triggers for tex-common (6.18) ... 217s Running updmap-sys. This may take some time... done. 217s Running mktexlsr /var/lib/texmf ... done. 217s Building format(s) --all. 247s This may take some time... done. 251s Reading package lists... 251s Building dependency tree... 251s Reading state information... 252s Starting pkgProblemResolver with broken count: 0 252s Starting 2 pkgProblemResolver with broken count: 0 252s Done 252s The following NEW packages will be installed: 252s autopkgtest-satdep 252s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 252s Need to get 0 B/700 B of archives. 252s After this operation, 0 B of additional disk space will be used. 252s Get:1 /tmp/autopkgtest.8Kb8Uf/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 252s Selecting previously unselected package autopkgtest-satdep. 252s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121382 files and directories currently installed.) 252s Preparing to unpack .../2-autopkgtest-satdep.deb ... 252s Unpacking autopkgtest-satdep (0) ... 252s Setting up autopkgtest-satdep (0) ... 254s (Reading database ... 121382 files and directories currently installed.) 254s Removing autopkgtest-satdep (0) ... 254s autopkgtest [13:10:05]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 254s autopkgtest [13:10:05]: test pkg-r-autopkgtest: [----------------------- 254s Test: Try to load the R library GenomicFiles 254s 254s R version 4.3.2 (2023-10-31) -- "Eye Holes" 254s Copyright (C) 2023 The R Foundation for Statistical Computing 254s Platform: x86_64-pc-linux-gnu (64-bit) 254s 254s R is free software and comes with ABSOLUTELY NO WARRANTY. 254s You are welcome to redistribute it under certain conditions. 254s Type 'license()' or 'licence()' for distribution details. 254s 254s R is a collaborative project with many contributors. 254s Type 'contributors()' for more information and 254s 'citation()' on how to cite R or R packages in publications. 254s 254s Type 'demo()' for some demos, 'help()' for on-line help, or 254s 'help.start()' for an HTML browser interface to help. 254s Type 'q()' to quit R. 254s 254s Loading required package: BiocGenerics 254s > library('GenomicFiles') 255s 255s Attaching package: ‘BiocGenerics’ 255s 255s The following objects are masked from ‘package:stats’: 255s 255s IQR, mad, sd, var, xtabs 255s 255s The following objects are masked from ‘package:base’: 255s 255s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 255s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 255s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 255s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 255s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 255s table, tapply, union, unique, unsplit, which.max, which.min 255s 255s Loading required package: MatrixGenerics 255s Loading required package: matrixStats 255s 255s Attaching package: ‘MatrixGenerics’ 255s 255s The following objects are masked from ‘package:matrixStats’: 255s 255s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 255s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 255s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 255s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 255s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 255s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 255s colWeightedMeans, colWeightedMedians, colWeightedSds, 255s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 255s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 255s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 255s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 255s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 255s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 255s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 255s rowWeightedSds, rowWeightedVars 255s 255s Loading required package: GenomicRanges 255s Loading required package: stats4 255s Loading required package: S4Vectors 255s 255s Attaching package: ‘S4Vectors’ 255s 255s The following object is masked from ‘package:utils’: 255s 255s findMatches 255s 255s The following objects are masked from ‘package:base’: 255s 255s expand.grid, I, unname 255s 255s Loading required package: IRanges 256s Loading required package: GenomeInfoDb 256s Loading required package: SummarizedExperiment 256s Loading required package: Biobase 257s Welcome to Bioconductor 257s 257s Vignettes contain introductory material; view with 257s 'browseVignettes()'. To cite Bioconductor, see 257s 'citation("Biobase")', and for packages 'citation("pkgname")'. 257s 257s 257s Attaching package: ‘Biobase’ 257s 257s The following object is masked from ‘package:MatrixGenerics’: 257s 257s rowMedians 257s 257s The following objects are masked from ‘package:matrixStats’: 257s 257s anyMissing, rowMedians 257s 259s Loading required package: BiocParallel 259s Loading required package: Rsamtools 259s Loading required package: Biostrings 259s Loading required package: XVector 260s 260s Attaching package: ‘Biostrings’ 260s 260s The following object is masked from ‘package:base’: 260s 260s strsplit 260s 261s Loading required package: rtracklayer 265s > 265s > 265s Other tests are currently unsupported! 265s They will be progressively added. 266s autopkgtest [13:10:17]: test pkg-r-autopkgtest: -----------------------] 266s pkg-r-autopkgtest PASS 266s autopkgtest [13:10:17]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 266s autopkgtest [13:10:17]: @@@@@@@@@@@@@@@@@@@@ summary 266s pkg-r-autopkgtest PASS 294s Creating nova instance adt-noble-i386-r-bioc-genomicfiles-20240321-130551-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240320.img (UUID 3219a3f4-90ea-47d9-8dfb-3912f2ae9f95)...