0s autopkgtest [02:40:52]: starting date and time: 2024-03-22 02:40:52+0000 0s autopkgtest [02:40:52]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [02:40:52]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.kcmzskk2/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-genomicfeatures --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-88.secgroup --name adt-noble-i386-r-bioc-genomicfeatures-20240322-024051-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 528s autopkgtest [02:49:40]: testbed dpkg architecture: amd64 528s autopkgtest [02:49:40]: testbed apt version: 2.7.12 528s autopkgtest [02:49:40]: test architecture: i386 528s autopkgtest [02:49:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 528s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 528s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 529s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 529s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 529s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3762 kB] 529s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB] 529s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB] 529s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 529s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 529s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 529s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 529s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1269 kB] 529s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4236 kB] 529s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 529s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 529s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 529s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 532s Fetched 11.3 MB in 2s (6962 kB/s) 532s Reading package lists... 534s Reading package lists... 534s Building dependency tree... 534s Reading state information... 535s Calculating upgrade... 535s The following packages will be upgraded: 535s cloud-init fonts-ubuntu-console python3-markupsafe 535s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 535s Need to get 629 kB of archives. 535s After this operation, 11.3 kB disk space will be freed. 535s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 535s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 535s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 535s Preconfiguring packages ... 535s Fetched 629 kB in 0s (26.5 MB/s) 536s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 536s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 536s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 536s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 536s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 536s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 536s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 536s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 536s Setting up cloud-init (24.1.2-0ubuntu1) ... 538s Setting up python3-markupsafe (2.1.5-1build1) ... 538s Processing triggers for man-db (2.12.0-3) ... 538s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 539s Reading package lists... 539s Building dependency tree... 539s Reading state information... 539s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 540s sh: Attempting to set up Debian/Ubuntu apt sources automatically 540s sh: Distribution appears to be Ubuntu 541s Reading package lists... 541s Building dependency tree... 541s Reading state information... 541s eatmydata is already the newest version (131-1). 541s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 541s Reading package lists... 542s Building dependency tree... 542s Reading state information... 542s dbus is already the newest version (1.14.10-4ubuntu1). 542s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 542s Reading package lists... 542s Building dependency tree... 542s Reading state information... 543s rng-tools-debian is already the newest version (2.4). 543s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 543s Reading package lists... 543s Building dependency tree... 543s Reading state information... 543s The following packages will be REMOVED: 543s cloud-init* python3-configobj* python3-debconf* 544s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 544s After this operation, 3256 kB disk space will be freed. 544s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 544s Removing cloud-init (24.1.2-0ubuntu1) ... 544s Removing python3-configobj (5.0.8-3) ... 544s Removing python3-debconf (1.5.86) ... 544s Processing triggers for man-db (2.12.0-3) ... 545s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 545s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 545s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 545s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 545s invoke-rc.d: policy-rc.d denied execution of try-restart. 545s Reading package lists... 546s Building dependency tree... 546s Reading state information... 546s linux-generic is already the newest version (6.8.0-11.11+1). 546s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 546s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 546s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 546s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 549s Reading package lists... 549s Reading package lists... 549s Building dependency tree... 549s Reading state information... 549s Calculating upgrade... 549s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 549s Reading package lists... 550s Building dependency tree... 550s Reading state information... 550s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 550s autopkgtest [02:50:02]: rebooting testbed after setup commands that affected boot 574s autopkgtest [02:50:26]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 575s autopkgtest [02:50:27]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicfeatures 576s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfeatures 1.54.1+dfsg-1 (dsc) [2513 B] 576s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfeatures 1.54.1+dfsg-1 (tar) [572 kB] 576s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfeatures 1.54.1+dfsg-1 (diff) [13.0 kB] 576s gpgv: Signature made Fri Dec 1 02:52:50 2023 UTC 576s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 576s gpgv: issuer "plessy@debian.org" 576s gpgv: Can't check signature: No public key 576s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicfeatures_1.54.1+dfsg-1.dsc: no acceptable signature found 576s autopkgtest [02:50:28]: testing package r-bioc-genomicfeatures version 1.54.1+dfsg-1 576s autopkgtest [02:50:28]: build not needed 577s autopkgtest [02:50:29]: test pkg-r-autopkgtest: preparing testbed 582s Note, using file '/tmp/autopkgtest.2VsYts/1-autopkgtest-satdep.dsc' to get the build dependencies 582s Reading package lists... 582s Building dependency tree... 582s Reading state information... 583s Starting pkgProblemResolver with broken count: 0 583s Starting 2 pkgProblemResolver with broken count: 0 583s Done 583s The following NEW packages will be installed: 583s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 583s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 583s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 583s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 583s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 583s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 583s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 583s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 583s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 583s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 583s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 583s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 583s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 583s libjs-highlight.js libjs-jquery libjs-jquery-datatables 583s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 583s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 583s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 583s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 583s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 583s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 583s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 583s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 583s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 583s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 583s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 583s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 583s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 583s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 583s r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 583s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 583s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 583s r-bioc-delayedarray r-bioc-ensembldb r-bioc-genomeinfodb 583s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 583s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 583s r-bioc-org.hs.eg.db r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools 583s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 583s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 583s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 583s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 583s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 583s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest 583s r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap 583s r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 583s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 583s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 583s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 583s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler 583s r-cran-magrittr r-cran-markdown r-cran-matrix r-cran-matrixstats 583s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig 583s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress 583s r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp 583s r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 583s r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny r-cran-snow 583s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble 583s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs 583s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 583s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 583s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 583s zlib1g-dev 583s 0 upgraded, 282 newly installed, 0 to remove and 0 not upgraded. 583s Need to get 496 MB of archives. 583s After this operation, 1739 MB of additional disk space will be used. 583s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 583s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 583s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 583s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 583s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 583s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 583s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 583s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 583s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 583s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 583s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 583s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 583s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 583s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 583s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 583s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 583s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 583s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 583s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 583s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 583s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 584s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 584s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 584s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 584s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 584s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 584s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 584s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 584s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 584s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 584s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 584s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 584s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 584s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 584s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 584s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 584s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 584s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 584s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 584s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 584s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 584s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 584s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 584s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 584s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 584s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 584s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 584s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 584s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 584s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 584s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 584s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 584s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 584s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 584s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 584s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 584s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 584s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 584s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 584s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 584s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 584s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 584s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 584s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 584s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 584s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 584s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 584s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 584s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 584s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 584s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 584s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 584s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 584s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 584s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 584s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 584s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 584s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 584s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 584s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 584s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 584s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 584s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 584s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 584s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 584s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 584s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 584s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 584s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 584s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 584s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 584s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 584s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 584s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 584s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 584s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 584s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 584s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 584s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 584s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 584s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 584s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 584s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 584s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 584s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 584s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 584s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 584s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 584s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 584s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 584s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 584s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 584s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 584s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 584s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 584s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 584s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 584s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 584s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 584s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 584s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 584s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 584s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 584s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 584s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 584s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 584s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 584s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 584s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 584s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 584s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 584s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 584s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 584s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 584s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 584s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 584s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 584s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 585s Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 585s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 585s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 585s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 585s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 585s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 585s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 585s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 585s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 585s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 585s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 585s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 585s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 585s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 585s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 585s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 585s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 585s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 585s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 585s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 585s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 585s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 585s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 585s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 585s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 585s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 585s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 585s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 585s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 585s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 585s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 585s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 585s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 585s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 585s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 585s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 585s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 585s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 585s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 585s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 585s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 585s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 585s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 585s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 585s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 585s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 585s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 585s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 585s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 585s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 585s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 585s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 585s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 585s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 585s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 585s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 585s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 585s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 585s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 585s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 585s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 585s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 585s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 585s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 585s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 585s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 585s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 585s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 585s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 585s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 585s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 585s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 585s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 585s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 585s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 585s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 585s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 585s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 585s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 585s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 585s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 585s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 585s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 585s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 585s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 585s Get:224 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 585s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 585s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 585s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 585s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 585s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 585s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 585s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 585s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 585s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 585s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 585s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 585s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 585s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 585s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 585s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 585s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 585s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 585s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 585s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 585s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 585s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 585s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 585s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 585s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 585s Get:249 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 585s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 585s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 586s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 586s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 586s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 586s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 586s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 586s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 586s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 586s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 586s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 586s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 586s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 586s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 586s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 586s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 586s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 586s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 586s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 586s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 586s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 586s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 586s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 586s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 586s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 586s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 586s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 586s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 586s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 586s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 586s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB] 587s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-markdown all 1.12+dfsg-1 [179 kB] 587s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 588s Preconfiguring packages ... 588s Fetched 496 MB in 4s (131 MB/s) 588s Selecting previously unselected package libc-dev-bin. 588s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 588s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 588s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 588s Selecting previously unselected package linux-libc-dev:amd64. 588s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 588s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 588s Selecting previously unselected package libcrypt-dev:amd64. 588s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 588s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 588s Selecting previously unselected package libtirpc-dev:amd64. 588s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 588s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 588s Selecting previously unselected package libnsl-dev:amd64. 588s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 588s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 588s Selecting previously unselected package rpcsvc-proto. 588s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 588s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 588s Selecting previously unselected package libc6-dev:amd64. 588s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 588s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 589s Selecting previously unselected package libisl23:amd64. 589s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 589s Unpacking libisl23:amd64 (0.26-3) ... 589s Selecting previously unselected package libmpc3:amd64. 589s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 589s Unpacking libmpc3:amd64 (1.3.1-1) ... 589s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 589s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 589s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 589s Selecting previously unselected package cpp-13. 589s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 589s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 589s Selecting previously unselected package cpp-x86-64-linux-gnu. 589s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 589s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 589s Selecting previously unselected package cpp. 589s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 589s Unpacking cpp (4:13.2.0-7ubuntu1) ... 589s Selecting previously unselected package libcc1-0:amd64. 589s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 589s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 589s Selecting previously unselected package libgomp1:amd64. 589s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 589s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 589s Selecting previously unselected package libitm1:amd64. 589s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 589s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 589s Selecting previously unselected package libatomic1:amd64. 589s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 589s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 589s Selecting previously unselected package libasan8:amd64. 589s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 589s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 589s Selecting previously unselected package liblsan0:amd64. 589s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 589s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 589s Selecting previously unselected package libtsan2:amd64. 589s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 589s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 589s Selecting previously unselected package libubsan1:amd64. 589s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 589s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 589s Selecting previously unselected package libhwasan0:amd64. 589s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 589s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 589s Selecting previously unselected package libquadmath0:amd64. 589s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 589s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 589s Selecting previously unselected package libgcc-13-dev:amd64. 589s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 589s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 589s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 589s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 589s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 590s Selecting previously unselected package gcc-13. 590s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 590s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 590s Selecting previously unselected package gcc-x86-64-linux-gnu. 590s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 590s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 590s Selecting previously unselected package gcc. 590s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 590s Unpacking gcc (4:13.2.0-7ubuntu1) ... 590s Selecting previously unselected package libstdc++-13-dev:amd64. 590s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 590s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 590s Selecting previously unselected package g++-13-x86-64-linux-gnu. 590s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 590s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 590s Selecting previously unselected package g++-13. 590s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 590s Unpacking g++-13 (13.2.0-17ubuntu2) ... 590s Selecting previously unselected package g++-x86-64-linux-gnu. 590s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 590s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 590s Selecting previously unselected package g++. 590s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 590s Unpacking g++ (4:13.2.0-7ubuntu1) ... 590s Selecting previously unselected package build-essential. 590s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 590s Unpacking build-essential (12.10ubuntu1) ... 590s Selecting previously unselected package dctrl-tools. 590s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 590s Unpacking dctrl-tools (2.24-3build2) ... 590s Selecting previously unselected package fonts-dejavu-mono. 590s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 590s Unpacking fonts-dejavu-mono (2.37-8) ... 591s Selecting previously unselected package fonts-dejavu-core. 591s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 591s Unpacking fonts-dejavu-core (2.37-8) ... 591s Selecting previously unselected package fontconfig-config. 591s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 591s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 591s Selecting previously unselected package libfontconfig1:amd64. 591s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 591s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 591s Selecting previously unselected package fontconfig. 591s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 591s Unpacking fontconfig (2.15.0-1ubuntu1) ... 591s Selecting previously unselected package fonts-font-awesome. 591s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 591s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 591s Selecting previously unselected package fonts-glyphicons-halflings. 591s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 591s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 591s Selecting previously unselected package fonts-lmodern. 591s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 591s Unpacking fonts-lmodern (2.005-1) ... 591s Selecting previously unselected package fonts-mathjax. 591s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 591s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 591s Selecting previously unselected package libgfortran5:amd64. 591s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 591s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 591s Selecting previously unselected package libgfortran-13-dev:amd64. 591s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 591s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 591s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 591s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 591s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 592s Selecting previously unselected package gfortran-13. 592s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 592s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 592s Selecting previously unselected package gfortran-x86-64-linux-gnu. 592s Preparing to unpack .../048-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 592s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 592s Selecting previously unselected package gfortran. 592s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 592s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 592s Selecting previously unselected package icu-devtools. 592s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_amd64.deb ... 592s Unpacking icu-devtools (74.2-1ubuntu1) ... 592s Selecting previously unselected package javascript-common. 592s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 592s Unpacking javascript-common (11+nmu1) ... 592s Selecting previously unselected package libio-string-perl. 592s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 592s Unpacking libio-string-perl (1.08-4) ... 592s Selecting previously unselected package liblatex-tounicode-perl. 592s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 592s Unpacking liblatex-tounicode-perl (0.54-2) ... 592s Selecting previously unselected package libbibtex-parser-perl. 592s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 592s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 592s Selecting previously unselected package libblas3:amd64. 592s Preparing to unpack .../055-libblas3_3.12.0-3_amd64.deb ... 592s Unpacking libblas3:amd64 (3.12.0-3) ... 592s Selecting previously unselected package libblas-dev:amd64. 592s Preparing to unpack .../056-libblas-dev_3.12.0-3_amd64.deb ... 592s Unpacking libblas-dev:amd64 (3.12.0-3) ... 592s Selecting previously unselected package libboost1.83-dev:amd64. 592s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 592s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 594s Selecting previously unselected package libboost-dev:amd64. 594s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 594s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ... 594s Selecting previously unselected package libbz2-dev:amd64. 594s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 594s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 594s Selecting previously unselected package libpixman-1-0:amd64. 594s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_amd64.deb ... 594s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 595s Selecting previously unselected package libxcb-render0:amd64. 595s Preparing to unpack .../061-libxcb-render0_1.15-1_amd64.deb ... 595s Unpacking libxcb-render0:amd64 (1.15-1) ... 595s Selecting previously unselected package libxcb-shm0:amd64. 595s Preparing to unpack .../062-libxcb-shm0_1.15-1_amd64.deb ... 595s Unpacking libxcb-shm0:amd64 (1.15-1) ... 595s Selecting previously unselected package libxrender1:amd64. 595s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 595s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 595s Selecting previously unselected package libcairo2:amd64. 595s Preparing to unpack .../064-libcairo2_1.18.0-1_amd64.deb ... 595s Unpacking libcairo2:amd64 (1.18.0-1) ... 595s Selecting previously unselected package libdatrie1:amd64. 595s Preparing to unpack .../065-libdatrie1_0.2.13-3_amd64.deb ... 595s Unpacking libdatrie1:amd64 (0.2.13-3) ... 595s Selecting previously unselected package libdeflate0:amd64. 595s Preparing to unpack .../066-libdeflate0_1.19-1_amd64.deb ... 595s Unpacking libdeflate0:amd64 (1.19-1) ... 595s Selecting previously unselected package libgraphite2-3:amd64. 595s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_amd64.deb ... 595s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 595s Selecting previously unselected package libharfbuzz0b:amd64. 595s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_amd64.deb ... 595s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 595s Selecting previously unselected package x11-common. 595s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 595s Unpacking x11-common (1:7.7+23ubuntu2) ... 595s Selecting previously unselected package libice6:amd64. 595s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_amd64.deb ... 595s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 595s Selecting previously unselected package libicu-dev:amd64. 595s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_amd64.deb ... 595s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 595s Selecting previously unselected package libjpeg-turbo8:amd64. 595s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 595s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 595s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 595s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 595s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 595s Selecting previously unselected package libjpeg8:amd64. 595s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_amd64.deb ... 595s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 595s Selecting previously unselected package libjpeg8-dev:amd64. 595s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 595s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 595s Selecting previously unselected package libjpeg-dev:amd64. 595s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 595s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 595s Selecting previously unselected package libjs-bootstrap. 595s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 595s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 595s Selecting previously unselected package libjs-popper.js. 595s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 595s Unpacking libjs-popper.js (1.16.1+ds-6) ... 595s Selecting previously unselected package libjs-bootstrap4. 595s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 595s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 595s Selecting previously unselected package libjs-d3. 595s Preparing to unpack .../080-libjs-d3_3.5.17-4_all.deb ... 595s Unpacking libjs-d3 (3.5.17-4) ... 595s Selecting previously unselected package libjs-es5-shim. 595s Preparing to unpack .../081-libjs-es5-shim_4.6.7-2_all.deb ... 595s Unpacking libjs-es5-shim (4.6.7-2) ... 595s Selecting previously unselected package libjs-highlight.js. 595s Preparing to unpack .../082-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 595s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 596s Selecting previously unselected package libjs-jquery. 596s Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 596s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 596s Selecting previously unselected package libjs-jquery-datatables. 596s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 596s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 596s Selecting previously unselected package libjs-sifter.js. 596s Preparing to unpack .../085-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 596s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 596s Selecting previously unselected package libjs-microplugin.js. 596s Preparing to unpack .../086-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 596s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 596s Selecting previously unselected package libjs-jquery-selectize.js. 596s Preparing to unpack .../087-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 596s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 596s Selecting previously unselected package libjs-jquery-ui. 596s Preparing to unpack .../088-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 596s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 596s Selecting previously unselected package libjs-json. 596s Preparing to unpack .../089-libjs-json_0~20221030+~1.0.8-1_all.deb ... 596s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 596s Selecting previously unselected package libjs-lunr. 596s Preparing to unpack .../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 596s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 596s Selecting previously unselected package libjs-prettify. 596s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 596s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 596s Selecting previously unselected package libkpathsea6:amd64. 596s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_amd64.deb ... 596s Unpacking libkpathsea6:amd64 (2023.20230311.66589-9) ... 596s Selecting previously unselected package liblapack3:amd64. 596s Preparing to unpack .../093-liblapack3_3.12.0-3_amd64.deb ... 596s Unpacking liblapack3:amd64 (3.12.0-3) ... 596s Selecting previously unselected package liblapack-dev:amd64. 596s Preparing to unpack .../094-liblapack-dev_3.12.0-3_amd64.deb ... 596s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 596s Selecting previously unselected package liblerc4:amd64. 596s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 596s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 596s Selecting previously unselected package liblua5.4-0:amd64. 596s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_amd64.deb ... 596s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 596s Selecting previously unselected package libncurses-dev:amd64. 596s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 596s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 596s Selecting previously unselected package libthai-data. 596s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 596s Unpacking libthai-data (0.1.29-2) ... 596s Selecting previously unselected package libthai0:amd64. 596s Preparing to unpack .../099-libthai0_0.1.29-2_amd64.deb ... 596s Unpacking libthai0:amd64 (0.1.29-2) ... 596s Selecting previously unselected package libpango-1.0-0:amd64. 596s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 596s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 596s Selecting previously unselected package libpangoft2-1.0-0:amd64. 596s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 596s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 596s Selecting previously unselected package libpangocairo-1.0-0:amd64. 596s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 596s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 596s Selecting previously unselected package libpaper1:amd64. 596s Preparing to unpack .../103-libpaper1_1.1.29_amd64.deb ... 596s Unpacking libpaper1:amd64 (1.1.29) ... 596s Selecting previously unselected package libpaper-utils. 596s Preparing to unpack .../104-libpaper-utils_1.1.29_amd64.deb ... 596s Unpacking libpaper-utils (1.1.29) ... 596s Selecting previously unselected package libpcre2-16-0:amd64. 596s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 596s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 596s Selecting previously unselected package libpcre2-32-0:amd64. 596s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 596s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 596s Selecting previously unselected package libpcre2-posix3:amd64. 596s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 596s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 597s Selecting previously unselected package libpcre2-dev:amd64. 597s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 597s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 597s Selecting previously unselected package libpkgconf3:amd64. 597s Preparing to unpack .../109-libpkgconf3_1.8.1-2_amd64.deb ... 597s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 597s Selecting previously unselected package zlib1g-dev:amd64. 597s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 597s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 597s Selecting previously unselected package libpng-dev:amd64. 597s Preparing to unpack .../111-libpng-dev_1.6.43-1_amd64.deb ... 597s Unpacking libpng-dev:amd64 (1.6.43-1) ... 597s Selecting previously unselected package libpotrace0:amd64. 597s Preparing to unpack .../112-libpotrace0_1.16-2_amd64.deb ... 597s Unpacking libpotrace0:amd64 (1.16-2) ... 597s Selecting previously unselected package libptexenc1:amd64. 597s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_amd64.deb ... 597s Unpacking libptexenc1:amd64 (2023.20230311.66589-9) ... 597s Selecting previously unselected package libreadline-dev:amd64. 597s Preparing to unpack .../114-libreadline-dev_8.2-3_amd64.deb ... 597s Unpacking libreadline-dev:amd64 (8.2-3) ... 597s Selecting previously unselected package libsharpyuv0:amd64. 597s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_amd64.deb ... 597s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 597s Selecting previously unselected package libsm6:amd64. 597s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_amd64.deb ... 597s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 597s Selecting previously unselected package libsynctex2:amd64. 597s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_amd64.deb ... 597s Unpacking libsynctex2:amd64 (2023.20230311.66589-9) ... 597s Selecting previously unselected package libtcl8.6:amd64. 597s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 597s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 597s Selecting previously unselected package libteckit0:amd64. 597s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_amd64.deb ... 597s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 597s Selecting previously unselected package libtexlua53-5:amd64. 597s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_amd64.deb ... 597s Unpacking libtexlua53-5:amd64 (2023.20230311.66589-9) ... 597s Selecting previously unselected package libjbig0:amd64. 597s Preparing to unpack .../121-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 597s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 597s Selecting previously unselected package libwebp7:amd64. 597s Preparing to unpack .../122-libwebp7_1.3.2-0.4_amd64.deb ... 597s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 597s Selecting previously unselected package libtiff6:amd64. 597s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 597s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 597s Selecting previously unselected package libxft2:amd64. 597s Preparing to unpack .../124-libxft2_2.3.6-1_amd64.deb ... 597s Unpacking libxft2:amd64 (2.3.6-1) ... 597s Selecting previously unselected package libxss1:amd64. 597s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_amd64.deb ... 597s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 597s Selecting previously unselected package libtk8.6:amd64. 597s Preparing to unpack .../126-libtk8.6_8.6.13-2_amd64.deb ... 597s Unpacking libtk8.6:amd64 (8.6.13-2) ... 597s Selecting previously unselected package libxt6:amd64. 597s Preparing to unpack .../127-libxt6_1%3a1.2.1-1.1_amd64.deb ... 597s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 597s Selecting previously unselected package libxmu6:amd64. 597s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_amd64.deb ... 597s Unpacking libxmu6:amd64 (2:1.1.3-3) ... 597s Selecting previously unselected package libxpm4:amd64. 597s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_amd64.deb ... 597s Unpacking libxpm4:amd64 (1:3.5.17-1) ... 597s Selecting previously unselected package libxaw7:amd64. 597s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_amd64.deb ... 597s Unpacking libxaw7:amd64 (2:1.0.14-1) ... 597s Selecting previously unselected package libxi6:amd64. 597s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_amd64.deb ... 597s Unpacking libxi6:amd64 (2:1.8.1-1) ... 597s Selecting previously unselected package libzzip-0-13:amd64. 597s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... 597s Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 597s Selecting previously unselected package node-bootstrap-sass. 597s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ... 597s Unpacking node-bootstrap-sass (3.4.3-2) ... 597s Selecting previously unselected package node-html5shiv. 597s Preparing to unpack .../134-node-html5shiv_3.7.3+dfsg-5_all.deb ... 597s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 597s Selecting previously unselected package node-normalize.css. 597s Preparing to unpack .../135-node-normalize.css_8.0.1-5_all.deb ... 597s Unpacking node-normalize.css (8.0.1-5) ... 597s Selecting previously unselected package pandoc-data. 597s Preparing to unpack .../136-pandoc-data_3.1.3-1_all.deb ... 597s Unpacking pandoc-data (3.1.3-1) ... 598s Selecting previously unselected package pandoc. 598s Preparing to unpack .../137-pandoc_3.1.3+ds-2_amd64.deb ... 598s Unpacking pandoc (3.1.3+ds-2) ... 598s Selecting previously unselected package pkgconf-bin. 599s Preparing to unpack .../138-pkgconf-bin_1.8.1-2_amd64.deb ... 599s Unpacking pkgconf-bin (1.8.1-2) ... 599s Selecting previously unselected package pkgconf:amd64. 599s Preparing to unpack .../139-pkgconf_1.8.1-2_amd64.deb ... 599s Unpacking pkgconf:amd64 (1.8.1-2) ... 599s Selecting previously unselected package pkg-config:amd64. 599s Preparing to unpack .../140-pkg-config_1.8.1-2_amd64.deb ... 599s Unpacking pkg-config:amd64 (1.8.1-2) ... 599s Selecting previously unselected package zip. 599s Preparing to unpack .../141-zip_3.0-13_amd64.deb ... 599s Unpacking zip (3.0-13) ... 599s Selecting previously unselected package unzip. 599s Preparing to unpack .../142-unzip_6.0-28ubuntu3_amd64.deb ... 599s Unpacking unzip (6.0-28ubuntu3) ... 599s Selecting previously unselected package xdg-utils. 599s Preparing to unpack .../143-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 599s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 599s Selecting previously unselected package r-base-core. 599s Preparing to unpack .../144-r-base-core_4.3.2-1build1_amd64.deb ... 599s Unpacking r-base-core (4.3.2-1build1) ... 599s Selecting previously unselected package liblzma-dev:amd64. 599s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_amd64.deb ... 599s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 599s Selecting previously unselected package r-base-dev. 599s Preparing to unpack .../146-r-base-dev_4.3.2-1build1_all.deb ... 599s Unpacking r-base-dev (4.3.2-1build1) ... 599s Selecting previously unselected package pkg-r-autopkgtest. 599s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 599s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 599s Selecting previously unselected package r-bioc-biocgenerics. 599s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 599s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 599s Selecting previously unselected package r-bioc-biobase. 599s Preparing to unpack .../149-r-bioc-biobase_2.62.0-1_amd64.deb ... 599s Unpacking r-bioc-biobase (2.62.0-1) ... 599s Selecting previously unselected package r-bioc-s4vectors. 599s Preparing to unpack .../150-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 599s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 599s Selecting previously unselected package r-bioc-iranges. 599s Preparing to unpack .../151-r-bioc-iranges_2.36.0-1_amd64.deb ... 599s Unpacking r-bioc-iranges (2.36.0-1) ... 599s Selecting previously unselected package r-cran-dbi. 599s Preparing to unpack .../152-r-cran-dbi_1.2.2-1_all.deb ... 599s Unpacking r-cran-dbi (1.2.2-1) ... 599s Selecting previously unselected package r-cran-bit. 599s Preparing to unpack .../153-r-cran-bit_4.0.5-1_amd64.deb ... 599s Unpacking r-cran-bit (4.0.5-1) ... 599s Selecting previously unselected package r-cran-bit64. 599s Preparing to unpack .../154-r-cran-bit64_4.0.5-1_amd64.deb ... 599s Unpacking r-cran-bit64 (4.0.5-1) ... 600s Selecting previously unselected package r-cran-rlang. 600s Preparing to unpack .../155-r-cran-rlang_1.1.3-1_amd64.deb ... 600s Unpacking r-cran-rlang (1.1.3-1) ... 600s Selecting previously unselected package r-cran-cli. 600s Preparing to unpack .../156-r-cran-cli_3.6.2-1_amd64.deb ... 600s Unpacking r-cran-cli (3.6.2-1) ... 600s Selecting previously unselected package r-cran-glue. 600s Preparing to unpack .../157-r-cran-glue_1.7.0-1_amd64.deb ... 600s Unpacking r-cran-glue (1.7.0-1) ... 600s Selecting previously unselected package r-cran-lifecycle. 600s Preparing to unpack .../158-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 600s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 600s Selecting previously unselected package r-cran-vctrs. 600s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_amd64.deb ... 600s Unpacking r-cran-vctrs (0.6.5-1) ... 600s Selecting previously unselected package r-cran-blob. 600s Preparing to unpack .../160-r-cran-blob_1.2.4-1_all.deb ... 600s Unpacking r-cran-blob (1.2.4-1) ... 600s Selecting previously unselected package r-cran-fastmap. 600s Preparing to unpack .../161-r-cran-fastmap_1.1.1-1_amd64.deb ... 600s Unpacking r-cran-fastmap (1.1.1-1) ... 600s Selecting previously unselected package r-cran-cachem. 600s Preparing to unpack .../162-r-cran-cachem_1.0.8-1_amd64.deb ... 600s Unpacking r-cran-cachem (1.0.8-1) ... 600s Selecting previously unselected package r-cran-memoise. 600s Preparing to unpack .../163-r-cran-memoise_2.0.1-1_all.deb ... 600s Unpacking r-cran-memoise (2.0.1-1) ... 600s Selecting previously unselected package r-cran-pkgconfig. 600s Preparing to unpack .../164-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 600s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 600s Selecting previously unselected package r-cran-plogr. 600s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build1_all.deb ... 600s Unpacking r-cran-plogr (0.2.0-3build1) ... 600s Selecting previously unselected package r-cran-cpp11. 600s Preparing to unpack .../166-r-cran-cpp11_0.4.7-1_all.deb ... 600s Unpacking r-cran-cpp11 (0.4.7-1) ... 600s Selecting previously unselected package r-cran-rsqlite. 600s Preparing to unpack .../167-r-cran-rsqlite_2.3.4-1_amd64.deb ... 600s Unpacking r-cran-rsqlite (2.3.4-1) ... 600s Selecting previously unselected package r-cran-curl. 600s Preparing to unpack .../168-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 600s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 600s Selecting previously unselected package r-cran-jsonlite. 600s Preparing to unpack .../169-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 600s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 600s Selecting previously unselected package r-cran-mime. 600s Preparing to unpack .../170-r-cran-mime_0.12-1_amd64.deb ... 600s Unpacking r-cran-mime (0.12-1) ... 600s Selecting previously unselected package r-cran-sys. 600s Preparing to unpack .../171-r-cran-sys_3.4.2-1_amd64.deb ... 600s Unpacking r-cran-sys (3.4.2-1) ... 600s Selecting previously unselected package r-cran-askpass. 600s Preparing to unpack .../172-r-cran-askpass_1.2.0-1_amd64.deb ... 600s Unpacking r-cran-askpass (1.2.0-1) ... 600s Selecting previously unselected package r-cran-openssl. 600s Preparing to unpack .../173-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 600s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 600s Selecting previously unselected package r-cran-r6. 600s Preparing to unpack .../174-r-cran-r6_2.5.1-1_all.deb ... 600s Unpacking r-cran-r6 (2.5.1-1) ... 600s Selecting previously unselected package r-cran-httr. 600s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ... 600s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 600s Selecting previously unselected package r-cran-png. 600s Preparing to unpack .../176-r-cran-png_0.1-8-1_amd64.deb ... 600s Unpacking r-cran-png (0.1-8-1) ... 600s Selecting previously unselected package r-bioc-zlibbioc. 600s Preparing to unpack .../177-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 600s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 600s Selecting previously unselected package r-bioc-xvector. 600s Preparing to unpack .../178-r-bioc-xvector_0.42.0-1_amd64.deb ... 600s Unpacking r-bioc-xvector (0.42.0-1) ... 600s Selecting previously unselected package r-cran-bitops. 600s Preparing to unpack .../179-r-cran-bitops_1.0-7-1_amd64.deb ... 600s Unpacking r-cran-bitops (1.0-7-1) ... 600s Selecting previously unselected package r-cran-rcurl. 600s Preparing to unpack .../180-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 600s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 601s Selecting previously unselected package r-bioc-genomeinfodbdata. 601s Preparing to unpack .../181-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 601s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 601s Selecting previously unselected package r-bioc-genomeinfodb. 601s Preparing to unpack .../182-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 601s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 601s Selecting previously unselected package r-cran-crayon. 601s Preparing to unpack .../183-r-cran-crayon_1.5.2-1_all.deb ... 601s Unpacking r-cran-crayon (1.5.2-1) ... 601s Selecting previously unselected package r-bioc-biostrings. 601s Preparing to unpack .../184-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 601s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 601s Selecting previously unselected package r-bioc-keggrest. 601s Preparing to unpack .../185-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 601s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 601s Selecting previously unselected package r-bioc-annotationdbi. 601s Preparing to unpack .../186-r-bioc-annotationdbi_1.64.1-1_all.deb ... 601s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 601s Selecting previously unselected package r-bioc-genomicranges. 601s Preparing to unpack .../187-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 601s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 601s Selecting previously unselected package r-cran-lazyeval. 601s Preparing to unpack .../188-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 601s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 601s Selecting previously unselected package r-bioc-annotationfilter. 601s Preparing to unpack .../189-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 601s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 601s Selecting previously unselected package r-cran-generics. 601s Preparing to unpack .../190-r-cran-generics_0.1.3-1_all.deb ... 601s Unpacking r-cran-generics (0.1.3-1) ... 601s Selecting previously unselected package r-cran-magrittr. 601s Preparing to unpack .../191-r-cran-magrittr_2.0.3-1_amd64.deb ... 601s Unpacking r-cran-magrittr (2.0.3-1) ... 601s Selecting previously unselected package r-cran-fansi. 601s Preparing to unpack .../192-r-cran-fansi_1.0.5-1_amd64.deb ... 601s Unpacking r-cran-fansi (1.0.5-1) ... 601s Selecting previously unselected package r-cran-utf8. 601s Preparing to unpack .../193-r-cran-utf8_1.2.4-1_amd64.deb ... 601s Unpacking r-cran-utf8 (1.2.4-1) ... 601s Selecting previously unselected package r-cran-pillar. 601s Preparing to unpack .../194-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 601s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 601s Selecting previously unselected package r-cran-tibble. 601s Preparing to unpack .../195-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 601s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 601s Selecting previously unselected package r-cran-withr. 601s Preparing to unpack .../196-r-cran-withr_2.5.0-1_all.deb ... 601s Unpacking r-cran-withr (2.5.0-1) ... 601s Selecting previously unselected package r-cran-tidyselect. 601s Preparing to unpack .../197-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 601s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 601s Selecting previously unselected package r-cran-dplyr. 601s Preparing to unpack .../198-r-cran-dplyr_1.1.4-1_amd64.deb ... 601s Unpacking r-cran-dplyr (1.1.4-1) ... 601s Selecting previously unselected package r-cran-purrr. 601s Preparing to unpack .../199-r-cran-purrr_1.0.2-1_amd64.deb ... 601s Unpacking r-cran-purrr (1.0.2-1) ... 602s Selecting previously unselected package r-cran-stringi. 602s Preparing to unpack .../200-r-cran-stringi_1.8.3-1_amd64.deb ... 602s Unpacking r-cran-stringi (1.8.3-1) ... 602s Selecting previously unselected package r-cran-stringr. 602s Preparing to unpack .../201-r-cran-stringr_1.5.1-1_all.deb ... 602s Unpacking r-cran-stringr (1.5.1-1) ... 602s Selecting previously unselected package r-cran-tidyr. 602s Preparing to unpack .../202-r-cran-tidyr_1.3.1-1_amd64.deb ... 602s Unpacking r-cran-tidyr (1.3.1-1) ... 602s Selecting previously unselected package r-cran-dbplyr. 602s Preparing to unpack .../203-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 602s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 602s Selecting previously unselected package r-cran-filelock. 602s Preparing to unpack .../204-r-cran-filelock_1.0.3-1_amd64.deb ... 602s Unpacking r-cran-filelock (1.0.3-1) ... 602s Selecting previously unselected package r-bioc-biocfilecache. 602s Preparing to unpack .../205-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 602s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 602s Selecting previously unselected package r-bioc-biocio. 602s Preparing to unpack .../206-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 602s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 602s Selecting previously unselected package r-cran-formatr. 602s Preparing to unpack .../207-r-cran-formatr_1.14-1_all.deb ... 602s Unpacking r-cran-formatr (1.14-1) ... 602s Selecting previously unselected package r-cran-lambda.r. 602s Preparing to unpack .../208-r-cran-lambda.r_1.2.4-2build1_all.deb ... 602s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 602s Selecting previously unselected package r-cran-futile.options. 602s Preparing to unpack .../209-r-cran-futile.options_1.0.1-3build1_all.deb ... 602s Unpacking r-cran-futile.options (1.0.1-3build1) ... 602s Selecting previously unselected package r-cran-futile.logger. 602s Preparing to unpack .../210-r-cran-futile.logger_1.4.3-4build1_all.deb ... 602s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 602s Selecting previously unselected package r-cran-snow. 602s Preparing to unpack .../211-r-cran-snow_1%3a0.4.4-2_all.deb ... 602s Unpacking r-cran-snow (1:0.4.4-2) ... 602s Selecting previously unselected package r-cran-codetools. 602s Preparing to unpack .../212-r-cran-codetools_0.2-19-1_all.deb ... 602s Unpacking r-cran-codetools (0.2-19-1) ... 602s Selecting previously unselected package r-cran-bh. 602s Preparing to unpack .../213-r-cran-bh_1.84.0-1_all.deb ... 602s Unpacking r-cran-bh (1.84.0-1) ... 602s Selecting previously unselected package r-bioc-biocparallel. 602s Preparing to unpack .../214-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 602s Unpacking r-bioc-biocparallel (1.36.0-1) ... 602s Selecting previously unselected package r-cran-base64enc. 602s Preparing to unpack .../215-r-cran-base64enc_0.1-3-3_amd64.deb ... 602s Unpacking r-cran-base64enc (0.1-3-3) ... 602s Selecting previously unselected package r-cran-digest. 602s Preparing to unpack .../216-r-cran-digest_0.6.34-1_amd64.deb ... 602s Unpacking r-cran-digest (0.6.34-1) ... 602s Selecting previously unselected package r-cran-ellipsis. 602s Preparing to unpack .../217-r-cran-ellipsis_0.3.2-2_amd64.deb ... 602s Unpacking r-cran-ellipsis (0.3.2-2) ... 602s Selecting previously unselected package r-cran-htmltools. 602s Preparing to unpack .../218-r-cran-htmltools_0.5.7-1_amd64.deb ... 602s Unpacking r-cran-htmltools (0.5.7-1) ... 602s Selecting previously unselected package r-cran-evaluate. 602s Preparing to unpack .../219-r-cran-evaluate_0.23-1_all.deb ... 602s Unpacking r-cran-evaluate (0.23-1) ... 602s Selecting previously unselected package r-cran-xfun. 602s Preparing to unpack .../220-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 602s Unpacking r-cran-xfun (0.41+dfsg-1) ... 602s Selecting previously unselected package r-cran-highr. 602s Preparing to unpack .../221-r-cran-highr_0.10+dfsg-1_all.deb ... 602s Unpacking r-cran-highr (0.10+dfsg-1) ... 602s Selecting previously unselected package r-cran-yaml. 602s Preparing to unpack .../222-r-cran-yaml_2.3.8-1_amd64.deb ... 602s Unpacking r-cran-yaml (2.3.8-1) ... 602s Selecting previously unselected package libjs-mathjax. 602s Preparing to unpack .../223-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 602s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 603s Selecting previously unselected package r-cran-knitr. 603s Preparing to unpack .../224-r-cran-knitr_1.45+dfsg-1_all.deb ... 603s Unpacking r-cran-knitr (1.45+dfsg-1) ... 603s Selecting previously unselected package r-cran-jquerylib. 603s Preparing to unpack .../225-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 603s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 603s Selecting previously unselected package r-cran-fs. 603s Preparing to unpack .../226-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 603s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 603s Selecting previously unselected package r-cran-rappdirs. 603s Preparing to unpack .../227-r-cran-rappdirs_0.3.3-1_amd64.deb ... 603s Unpacking r-cran-rappdirs (0.3.3-1) ... 603s Selecting previously unselected package r-cran-sass. 603s Preparing to unpack .../228-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 603s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 603s Selecting previously unselected package r-cran-bslib. 604s Preparing to unpack .../229-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 604s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 604s Selecting previously unselected package r-cran-fontawesome. 604s Preparing to unpack .../230-r-cran-fontawesome_0.5.2-1_all.deb ... 604s Unpacking r-cran-fontawesome (0.5.2-1) ... 604s Selecting previously unselected package r-cran-tinytex. 604s Preparing to unpack .../231-r-cran-tinytex_0.49-1_all.deb ... 604s Unpacking r-cran-tinytex (0.49-1) ... 604s Selecting previously unselected package libjs-modernizr. 604s Preparing to unpack .../232-libjs-modernizr_2.6.2+ds1-5_all.deb ... 604s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 604s Selecting previously unselected package r-cran-littler. 604s Preparing to unpack .../233-r-cran-littler_0.3.19-1_amd64.deb ... 604s Unpacking r-cran-littler (0.3.19-1) ... 604s Selecting previously unselected package r-cran-pkgkitten. 604s Preparing to unpack .../234-r-cran-pkgkitten_0.2.3-1_all.deb ... 604s Unpacking r-cran-pkgkitten (0.2.3-1) ... 604s Selecting previously unselected package r-cran-rcpp. 604s Preparing to unpack .../235-r-cran-rcpp_1.0.12-1_amd64.deb ... 604s Unpacking r-cran-rcpp (1.0.12-1) ... 604s Selecting previously unselected package r-cran-later. 604s Preparing to unpack .../236-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 604s Unpacking r-cran-later (1.3.2+dfsg-1) ... 604s Selecting previously unselected package r-cran-promises. 604s Preparing to unpack .../237-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 604s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 604s Selecting previously unselected package r-cran-httpuv. 604s Preparing to unpack .../238-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 604s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 604s Selecting previously unselected package r-cran-xtable. 604s Preparing to unpack .../239-r-cran-xtable_1%3a1.8-4-2_all.deb ... 604s Unpacking r-cran-xtable (1:1.8-4-2) ... 604s Selecting previously unselected package r-cran-sourcetools. 604s Preparing to unpack .../240-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 604s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 604s Selecting previously unselected package r-cran-commonmark. 604s Preparing to unpack .../241-r-cran-commonmark_1.9.1-1_amd64.deb ... 604s Unpacking r-cran-commonmark (1.9.1-1) ... 604s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 604s Preparing to unpack .../242-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 604s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 604s Selecting previously unselected package r-cran-shiny. 604s Preparing to unpack .../243-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 604s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 604s Selecting previously unselected package r-cran-rmarkdown. 604s Preparing to unpack .../244-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 604s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 605s Selecting previously unselected package r-cran-bookdown. 605s Preparing to unpack .../245-r-cran-bookdown_0.37+dfsg-1_all.deb ... 605s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 605s Selecting previously unselected package r-cran-biocmanager. 605s Preparing to unpack .../246-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 605s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 605s Selecting previously unselected package tex-common. 605s Preparing to unpack .../247-tex-common_6.18_all.deb ... 605s Unpacking tex-common (6.18) ... 605s Selecting previously unselected package t1utils. 605s Preparing to unpack .../248-t1utils_1.41-4build2_amd64.deb ... 605s Unpacking t1utils (1.41-4build2) ... 605s Selecting previously unselected package texlive-binaries. 605s Preparing to unpack .../249-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 605s Unpacking texlive-binaries (2023.20230311.66589-9) ... 605s Selecting previously unselected package texlive-base. 605s Preparing to unpack .../250-texlive-base_2023.20240207-1_all.deb ... 605s Unpacking texlive-base (2023.20240207-1) ... 606s Selecting previously unselected package texlive-latex-base. 606s Preparing to unpack .../251-texlive-latex-base_2023.20240207-1_all.deb ... 606s Unpacking texlive-latex-base (2023.20240207-1) ... 607s Selecting previously unselected package texlive-bibtex-extra. 607s Preparing to unpack .../252-texlive-bibtex-extra_2023.20240207-1_all.deb ... 607s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 610s Selecting previously unselected package r-bioc-biocstyle. 610s Preparing to unpack .../253-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 610s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 610s Selecting previously unselected package r-cran-xml. 610s Preparing to unpack .../254-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 610s Unpacking r-cran-xml (3.99-0.16.1-1) ... 611s Selecting previously unselected package r-cran-hms. 611s Preparing to unpack .../255-r-cran-hms_1.1.3-1_all.deb ... 611s Unpacking r-cran-hms (1.1.3-1) ... 611s Selecting previously unselected package r-cran-prettyunits. 611s Preparing to unpack .../256-r-cran-prettyunits_1.2.0-1_all.deb ... 611s Unpacking r-cran-prettyunits (1.2.0-1) ... 611s Selecting previously unselected package r-cran-progress. 611s Preparing to unpack .../257-r-cran-progress_1.2.3-1_all.deb ... 611s Unpacking r-cran-progress (1.2.3-1) ... 611s Selecting previously unselected package r-cran-xml2. 611s Preparing to unpack .../258-r-cran-xml2_1.3.6-1_amd64.deb ... 611s Unpacking r-cran-xml2 (1.3.6-1) ... 611s Selecting previously unselected package r-bioc-biomart. 611s Preparing to unpack .../259-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 611s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 611s Selecting previously unselected package r-bioc-rhtslib. 611s Preparing to unpack .../260-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 611s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 611s Selecting previously unselected package r-bioc-rsamtools. 611s Preparing to unpack .../261-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 611s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 611s Selecting previously unselected package r-cran-matrixstats. 611s Preparing to unpack .../262-r-cran-matrixstats_1.2.0-1_amd64.deb ... 611s Unpacking r-cran-matrixstats (1.2.0-1) ... 611s Selecting previously unselected package r-bioc-matrixgenerics. 611s Preparing to unpack .../263-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 611s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 611s Selecting previously unselected package r-cran-lattice. 611s Preparing to unpack .../264-r-cran-lattice_0.22-5-1_amd64.deb ... 611s Unpacking r-cran-lattice (0.22-5-1) ... 611s Selecting previously unselected package r-cran-matrix. 611s Preparing to unpack .../265-r-cran-matrix_1.6-5-1_amd64.deb ... 611s Unpacking r-cran-matrix (1.6-5-1) ... 611s Selecting previously unselected package r-cran-abind. 611s Preparing to unpack .../266-r-cran-abind_1.4-5-2_all.deb ... 611s Unpacking r-cran-abind (1.4-5-2) ... 611s Selecting previously unselected package r-bioc-s4arrays. 611s Preparing to unpack .../267-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 611s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 611s Selecting previously unselected package r-bioc-sparsearray. 611s Preparing to unpack .../268-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 611s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 611s Selecting previously unselected package r-bioc-delayedarray. 611s Preparing to unpack .../269-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 611s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 611s Selecting previously unselected package r-bioc-summarizedexperiment. 611s Preparing to unpack .../270-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 611s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 611s Selecting previously unselected package r-bioc-genomicalignments. 611s Preparing to unpack .../271-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 611s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 611s Selecting previously unselected package r-cran-rjson. 611s Preparing to unpack .../272-r-cran-rjson_0.2.21-1_amd64.deb ... 611s Unpacking r-cran-rjson (0.2.21-1) ... 611s Selecting previously unselected package r-cran-restfulr. 611s Preparing to unpack .../273-r-cran-restfulr_0.0.15-1_amd64.deb ... 611s Unpacking r-cran-restfulr (0.0.15-1) ... 611s Selecting previously unselected package r-bioc-rtracklayer. 611s Preparing to unpack .../274-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 611s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 612s Selecting previously unselected package r-bioc-bsgenome. 612s Preparing to unpack .../275-r-bioc-bsgenome_1.70.2-1_all.deb ... 612s Unpacking r-bioc-bsgenome (1.70.2-1) ... 612s Selecting previously unselected package r-bioc-genomicfeatures. 612s Preparing to unpack .../276-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 612s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 612s Selecting previously unselected package r-bioc-protgenerics. 612s Preparing to unpack .../277-r-bioc-protgenerics_1.34.0-1_all.deb ... 612s Unpacking r-bioc-protgenerics (1.34.0-1) ... 612s Selecting previously unselected package r-bioc-ensembldb. 612s Preparing to unpack .../278-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 612s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 612s Selecting previously unselected package r-bioc-org.hs.eg.db. 612s Preparing to unpack .../279-r-bioc-org.hs.eg.db_3.18.0-1_all.deb ... 612s Unpacking r-bioc-org.hs.eg.db (3.18.0-1) ... 613s Selecting previously unselected package r-cran-markdown. 613s Preparing to unpack .../280-r-cran-markdown_1.12+dfsg-1_all.deb ... 613s Unpacking r-cran-markdown (1.12+dfsg-1) ... 614s Selecting previously unselected package r-cran-runit. 614s Preparing to unpack .../281-r-cran-runit_0.4.33-1_all.deb ... 614s Unpacking r-cran-runit (0.4.33-1) ... 614s Setting up libjs-json (0~20221030+~1.0.8-1) ... 614s Setting up javascript-common (11+nmu1) ... 614s Setting up libgraphite2-3:amd64 (1.3.14-2) ... 614s Setting up libpixman-1-0:amd64 (0.42.2-1) ... 614s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ... 614s Setting up libpaper1:amd64 (1.1.29) ... 614s 614s Creating config file /etc/papersize with new version 614s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 614s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 614s Setting up libxpm4:amd64 (1:3.5.17-1) ... 614s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 614s Setting up libxi6:amd64 (2:1.8.1-1) ... 614s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 614s Setting up libdatrie1:amd64 (0.2.13-3) ... 614s Setting up libjs-popper.js (1.16.1+ds-6) ... 614s Setting up libxcb-render0:amd64 (1.15-1) ... 614s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 614s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 614s Setting up libjs-lunr (2.3.9~dfsg-2) ... 614s Setting up unzip (6.0-28ubuntu3) ... 614s Setting up liblatex-tounicode-perl (0.54-2) ... 614s Setting up x11-common (1:7.7+23ubuntu2) ... 614s Setting up node-html5shiv (3.7.3+dfsg-5) ... 614s Setting up libdeflate0:amd64 (1.19-1) ... 614s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 614s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 614s Setting up libxcb-shm0:amd64 (1.15-1) ... 614s Setting up libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 614s Setting up libpaper-utils (1.1.29) ... 614s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ... 614s Setting up libjs-modernizr (2.6.2+ds1-5) ... 614s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ... 614s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 614s Setting up libjs-es5-shim (4.6.7-2) ... 614s Setting up tex-common (6.18) ... 614s update-language: texlive-base not installed and configured, doing nothing! 614s Setting up libio-string-perl (1.08-4) ... 614s Setting up zip (3.0-13) ... 614s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 614s Setting up libblas3:amd64 (3.12.0-3) ... 615s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 615s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 615s Setting up libpkgconf3:amd64 (1.8.1-2) ... 615s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 615s Setting up libteckit0:amd64 (2.5.12+ds1-1) ... 615s Setting up t1utils (1.41-4build2) ... 615s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ... 615s Setting up libtexlua53-5:amd64 (2023.20230311.66589-9) ... 615s Setting up libjs-d3 (3.5.17-4) ... 615s Setting up fonts-dejavu-mono (2.37-8) ... 615s Setting up libmpc3:amd64 (1.3.1-1) ... 615s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ... 615s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... 615s Setting up icu-devtools (74.2-1ubuntu1) ... 615s Setting up fonts-dejavu-core (2.37-8) ... 615s Setting up pkgconf-bin (1.8.1-2) ... 615s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 615s Setting up libkpathsea6:amd64 (2023.20230311.66589-9) ... 615s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 615s Setting up libwebp7:amd64 (1.3.2-0.4) ... 615s Setting up liblzma-dev:amd64 (5.4.5-0.3) ... 615s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ... 615s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 615s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 615s Setting up libnsl-dev:amd64 (1.3.0-3) ... 615s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 615s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 615s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 615s Setting up fonts-lmodern (2.005-1) ... 615s Setting up liblua5.4-0:amd64 (5.4.6-3) ... 615s Setting up libharfbuzz0b:amd64 (8.3.0-2) ... 615s Setting up libthai-data (0.1.29-2) ... 615s Setting up node-bootstrap-sass (3.4.3-2) ... 615s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 615s Setting up libxss1:amd64 (1:1.2.3-1build2) ... 615s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 615s Setting up pandoc-data (3.1.3-1) ... 615s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ... 615s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 615s Setting up libisl23:amd64 (0.26-3) ... 615s Setting up libc-dev-bin (2.39-0ubuntu2) ... 615s Setting up node-normalize.css (8.0.1-5) ... 615s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 615s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 615s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 615s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 615s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 615s Setting up libblas-dev:amd64 (3.12.0-3) ... 615s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 615s Setting up dctrl-tools (2.24-3build2) ... 615s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 615s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 615s Setting up libsynctex2:amd64 (2023.20230311.66589-9) ... 615s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 615s Setting up libpotrace0:amd64 (1.16-2) ... 615s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 615s Setting up libice6:amd64 (2:1.0.10-1build2) ... 615s Setting up liblapack3:amd64 (3.12.0-3) ... 615s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 615s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 615s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 615s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 615s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 615s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 615s Setting up pkgconf:amd64 (1.8.1-2) ... 615s Setting up libthai0:amd64 (0.1.29-2) ... 615s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 615s Setting up libptexenc1:amd64 (2023.20230311.66589-9) ... 615s Setting up pandoc (3.1.3+ds-2) ... 615s Setting up liblapack-dev:amd64 (3.12.0-3) ... 615s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 615s Setting up pkg-config:amd64 (1.8.1-2) ... 615s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 615s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 615s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ... 615s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 615s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 615s Setting up libsm6:amd64 (2:1.2.3-1build2) ... 615s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ... 615s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 615s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 615s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 615s Setting up fontconfig (2.15.0-1ubuntu1) ... 617s Regenerating fonts cache... done. 617s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 617s Setting up libxft2:amd64 (2.3.6-1) ... 617s Setting up libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 617s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 617s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ... 617s Setting up cpp-13 (13.2.0-17ubuntu2) ... 617s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 617s Setting up libtk8.6:amd64 (8.6.13-2) ... 617s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... 617s Setting up libreadline-dev:amd64 (8.2-3) ... 617s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 617s Setting up libcairo2:amd64 (1.18.0-1) ... 617s Setting up gcc-13 (13.2.0-17ubuntu2) ... 617s Setting up libxt6:amd64 (1:1.2.1-1.1) ... 617s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 617s Setting up cpp (4:13.2.0-7ubuntu1) ... 617s Setting up libboost-dev:amd64 (1.83.0.1ubuntu2) ... 617s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 617s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 617s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 617s Setting up libxmu6:amd64 (2:1.1.3-3) ... 617s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 617s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 617s Setting up libpng-dev:amd64 (1.6.43-1) ... 617s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 617s Setting up libxaw7:amd64 (2:1.0.14-1) ... 617s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 617s Setting up gcc (4:13.2.0-7ubuntu1) ... 617s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 617s Setting up r-base-core (4.3.2-1build1) ... 617s 617s Creating config file /etc/R/Renviron with new version 617s Setting up r-cran-crayon (1.5.2-1) ... 617s Setting up r-cran-sourcetools (0.1.7-1-1) ... 617s Setting up r-cran-futile.options (1.0.1-3build1) ... 617s Setting up r-cran-lattice (0.22-5-1) ... 617s Setting up r-cran-formatr (1.14-1) ... 617s Setting up r-cran-xml (3.99-0.16.1-1) ... 617s Setting up texlive-binaries (2023.20230311.66589-9) ... 617s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 617s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 617s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 617s Setting up r-cran-lazyeval (0.2.2-1build1) ... 617s Setting up r-cran-commonmark (1.9.1-1) ... 617s Setting up r-cran-r6 (2.5.1-1) ... 617s Setting up r-cran-pkgkitten (0.2.3-1) ... 617s Setting up texlive-base (2023.20240207-1) ... 618s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 618s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 618s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 619s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 619s Setting up r-cran-magrittr (2.0.3-1) ... 619s Setting up r-cran-rappdirs (0.3.3-1) ... 619s Setting up r-cran-filelock (1.0.3-1) ... 619s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 619s Setting up r-cran-littler (0.3.19-1) ... 619s Setting up r-cran-bh (1.84.0-1) ... 619s Setting up r-cran-fs (1.6.3+dfsg-1) ... 619s Setting up r-cran-rcpp (1.0.12-1) ... 619s Setting up r-cran-curl (5.2.0+dfsg-1) ... 619s Setting up r-cran-codetools (0.2-19-1) ... 619s Setting up g++-13 (13.2.0-17ubuntu2) ... 619s Setting up r-bioc-biocgenerics (0.48.1-2) ... 619s Setting up r-cran-rlang (1.1.3-1) ... 619s Setting up r-cran-matrixstats (1.2.0-1) ... 619s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 619s Setting up r-cran-xfun (0.41+dfsg-1) ... 619s Setting up r-cran-sys (3.4.2-1) ... 619s Setting up r-cran-plogr (0.2.0-3build1) ... 619s Setting up r-cran-withr (2.5.0-1) ... 619s Setting up r-cran-mime (0.12-1) ... 619s Setting up r-cran-generics (0.1.3-1) ... 619s Setting up r-cran-base64enc (0.1-3-3) ... 619s Setting up r-cran-abind (1.4-5-2) ... 619s Setting up r-cran-digest (0.6.34-1) ... 619s Setting up r-cran-yaml (2.3.8-1) ... 619s Setting up r-cran-lambda.r (1.2.4-2build1) ... 619s Setting up r-bioc-protgenerics (1.34.0-1) ... 619s Setting up r-cran-evaluate (0.23-1) ... 619s Setting up r-cran-dbi (1.2.2-1) ... 619s Setting up r-cran-highr (0.10+dfsg-1) ... 619s Setting up r-cran-prettyunits (1.2.0-1) ... 619s Setting up r-cran-fansi (1.0.5-1) ... 619s Setting up r-cran-snow (1:0.4.4-2) ... 619s Setting up r-cran-glue (1.7.0-1) ... 619s Setting up r-cran-bit (4.0.5-1) ... 619s Setting up r-cran-xtable (1:1.8-4-2) ... 619s Setting up r-cran-cli (3.6.2-1) ... 619s Setting up gfortran (4:13.2.0-7ubuntu1) ... 619s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 619s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 619s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 619s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 619s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 619s Setting up r-cran-bitops (1.0-7-1) ... 619s Setting up r-cran-bit64 (4.0.5-1) ... 619s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 619s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 619s Setting up r-cran-askpass (1.2.0-1) ... 619s Setting up r-cran-fastmap (1.1.1-1) ... 619s Setting up r-cran-png (0.1-8-1) ... 619s Setting up r-bioc-biobase (2.62.0-1) ... 619s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 619s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 619s Setting up r-cran-utf8 (1.2.4-1) ... 619s Setting up r-cran-stringi (1.8.3-1) ... 619s Setting up texlive-latex-base (2023.20240207-1) ... 619s Setting up r-cran-markdown (1.12+dfsg-1) ... 619s Setting up r-cran-cpp11 (0.4.7-1) ... 619s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 619s Setting up r-cran-runit (0.4.33-1) ... 619s Setting up r-cran-futile.logger (1.4.3-4build1) ... 619s Setting up r-cran-later (1.3.2+dfsg-1) ... 619s Setting up r-cran-matrix (1.6-5-1) ... 619s Setting up r-cran-tinytex (0.49-1) ... 619s Setting up r-cran-knitr (1.45+dfsg-1) ... 619s Setting up g++ (4:13.2.0-7ubuntu1) ... 619s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 619s Setting up r-cran-cachem (1.0.8-1) ... 619s Setting up build-essential (12.10ubuntu1) ... 619s Setting up r-bioc-iranges (2.36.0-1) ... 619s Setting up r-cran-rjson (0.2.21-1) ... 619s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 619s Setting up r-cran-restfulr (0.0.15-1) ... 619s Setting up r-cran-vctrs (0.6.5-1) ... 619s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 619s Setting up r-cran-ellipsis (0.3.2-2) ... 619s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 619s Setting up r-base-dev (4.3.2-1build1) ... 619s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 619s Setting up r-cran-stringr (1.5.1-1) ... 619s Setting up r-bioc-biocparallel (1.36.0-1) ... 619s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 619s Setting up r-cran-xml2 (1.3.6-1) ... 619s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 619s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 619s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 619s Setting up texlive-bibtex-extra (2023.20240207-1) ... 619s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 619s Setting up r-cran-httr (1.4.7+dfsg-1) ... 619s Setting up r-cran-hms (1.1.3-1) ... 619s Setting up r-cran-memoise (2.0.1-1) ... 619s Setting up r-cran-promises (1.2.1+dfsg-1) ... 619s Setting up r-cran-purrr (1.0.2-1) ... 619s Setting up r-cran-blob (1.2.4-1) ... 619s Setting up r-cran-htmltools (0.5.7-1) ... 619s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 619s Setting up r-bioc-xvector (0.42.0-1) ... 619s Setting up r-cran-sass (0.4.8+dfsg-1) ... 619s Setting up r-cran-dplyr (1.1.4-1) ... 619s Setting up r-cran-rsqlite (2.3.4-1) ... 619s Setting up r-cran-progress (1.2.3-1) ... 619s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 619s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 619s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 619s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 619s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 619s Setting up r-cran-fontawesome (0.5.2-1) ... 619s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 619s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 619s Setting up r-cran-tidyr (1.3.1-1) ... 619s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 619s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 619s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 619s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 619s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 619s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 619s Setting up r-bioc-annotationdbi (1.64.1-1) ... 619s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 619s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 619s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 619s Setting up r-bioc-genomicalignments (1.38.2-1) ... 619s Setting up r-cran-bookdown (0.37+dfsg-1) ... 619s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ... 619s Setting up r-bioc-rtracklayer (1.62.0-1) ... 619s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 619s Setting up r-bioc-bsgenome (1.70.2-1) ... 619s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 619s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 619s Processing triggers for man-db (2.12.0-3) ... 621s Processing triggers for install-info (7.1-3) ... 621s Processing triggers for libc-bin (2.39-0ubuntu2) ... 621s Processing triggers for tex-common (6.18) ... 621s Running updmap-sys. This may take some time... done. 621s Running mktexlsr /var/lib/texmf ... done. 621s Building format(s) --all. 652s This may take some time... done. 657s Reading package lists... 658s Building dependency tree... 658s Reading state information... 658s Starting pkgProblemResolver with broken count: 0 658s Starting 2 pkgProblemResolver with broken count: 0 658s Done 658s The following NEW packages will be installed: 658s autopkgtest-satdep 658s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 658s Need to get 0 B/696 B of archives. 658s After this operation, 0 B of additional disk space will be used. 658s Get:1 /tmp/autopkgtest.2VsYts/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 659s Selecting previously unselected package autopkgtest-satdep. 659s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121230 files and directories currently installed.) 659s Preparing to unpack .../2-autopkgtest-satdep.deb ... 659s Unpacking autopkgtest-satdep (0) ... 659s Setting up autopkgtest-satdep (0) ... 661s (Reading database ... 121230 files and directories currently installed.) 661s Removing autopkgtest-satdep (0) ... 661s autopkgtest [02:51:53]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 661s autopkgtest [02:51:53]: test pkg-r-autopkgtest: [----------------------- 661s Test: Try to load the R library GenomicFeatures 661s 661s R version 4.3.2 (2023-10-31) -- "Eye Holes" 661s Copyright (C) 2023 The R Foundation for Statistical Computing 661s Platform: x86_64-pc-linux-gnu (64-bit) 661s 661s R is free software and comes with ABSOLUTELY NO WARRANTY. 661s You are welcome to redistribute it under certain conditions. 661s Type 'license()' or 'licence()' for distribution details. 661s 661s R is a collaborative project with many contributors. 661s Type 'contributors()' for more information and 661s 'citation()' on how to cite R or R packages in publications. 661s 661s Type 'demo()' for some demos, 'help()' for on-line help, or 661s 'help.start()' for an HTML browser interface to help. 661s Type 'q()' to quit R. 661s 661s > library('GenomicFeatures') 661s Loading required package: BiocGenerics 661s 661s Attaching package: ‘BiocGenerics’ 661s 661s The following objects are masked from ‘package:stats’: 661s 661s IQR, mad, sd, var, xtabs 661s 661s The following objects are masked from ‘package:base’: 661s 661s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 661s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 661s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 661s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 661s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 661s table, tapply, union, unique, unsplit, which.max, which.min 661s 661s Loading required package: S4Vectors 661s Loading required package: stats4 662s 662s Attaching package: ‘S4Vectors’ 662s 662s The following object is masked from ‘package:utils’: 662s 662s findMatches 662s 662s The following objects are masked from ‘package:base’: 662s 662s expand.grid, I, unname 662s 662s Loading required package: IRanges 662s Loading required package: GenomeInfoDb 663s Loading required package: GenomicRanges 663s Loading required package: AnnotationDbi 663s Loading required package: Biobase 664s Welcome to Bioconductor 664s 664s Vignettes contain introductory material; view with 664s 'browseVignettes()'. To cite Bioconductor, see 664s 'citation("Biobase")', and for packages 'citation("pkgname")'. 664s 671s > 671s > 671s Other tests are currently unsupported! 671s They will be progressively added. 672s autopkgtest [02:52:04]: test pkg-r-autopkgtest: -----------------------] 672s pkg-r-autopkgtest PASS 672s autopkgtest [02:52:04]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 672s autopkgtest [02:52:04]: @@@@@@@@@@@@@@@@@@@@ summary 672s pkg-r-autopkgtest PASS 682s Creating nova instance adt-noble-i386-r-bioc-genomicfeatures-20240322-024051-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...