0s autopkgtest [02:36:58]: starting date and time: 2024-03-22 02:36:58+0000 0s autopkgtest [02:36:58]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [02:36:58]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1nh7borw/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-genomeinfodb --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-59.secgroup --name adt-noble-i386-r-bioc-genomeinfodb-20240322-023657-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 597s autopkgtest [02:46:55]: testbed dpkg architecture: amd64 597s autopkgtest [02:46:55]: testbed apt version: 2.7.12 597s autopkgtest [02:46:55]: test architecture: i386 597s autopkgtest [02:46:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 597s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 598s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 598s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 598s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 598s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3762 kB] 598s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB] 598s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB] 598s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 598s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 598s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 598s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 598s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4236 kB] 598s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1269 kB] 598s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 598s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 598s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 598s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 601s Fetched 11.3 MB in 1s (7609 kB/s) 601s Reading package lists... 603s Reading package lists... 603s Building dependency tree... 603s Reading state information... 604s Calculating upgrade... 604s The following packages will be upgraded: 604s cloud-init fonts-ubuntu-console python3-markupsafe 604s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 604s Need to get 629 kB of archives. 604s After this operation, 11.3 kB disk space will be freed. 604s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 604s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 604s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 604s Preconfiguring packages ... 605s Fetched 629 kB in 0s (13.5 MB/s) 605s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 605s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 605s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 605s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 605s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 605s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 605s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 605s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 605s Setting up cloud-init (24.1.2-0ubuntu1) ... 607s Setting up python3-markupsafe (2.1.5-1build1) ... 607s Processing triggers for man-db (2.12.0-3) ... 607s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 608s Reading package lists... 608s Building dependency tree... 608s Reading state information... 608s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 609s sh: Attempting to set up Debian/Ubuntu apt sources automatically 609s sh: Distribution appears to be Ubuntu 610s Reading package lists... 610s Building dependency tree... 610s Reading state information... 610s eatmydata is already the newest version (131-1). 610s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 610s Reading package lists... 611s Building dependency tree... 611s Reading state information... 611s dbus is already the newest version (1.14.10-4ubuntu1). 611s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 611s Reading package lists... 611s Building dependency tree... 611s Reading state information... 611s rng-tools-debian is already the newest version (2.4). 611s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 611s Reading package lists... 612s Building dependency tree... 612s Reading state information... 612s The following packages will be REMOVED: 612s cloud-init* python3-configobj* python3-debconf* 613s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 613s After this operation, 3256 kB disk space will be freed. 613s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 613s Removing cloud-init (24.1.2-0ubuntu1) ... 613s Removing python3-configobj (5.0.8-3) ... 613s Removing python3-debconf (1.5.86) ... 613s Processing triggers for man-db (2.12.0-3) ... 614s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 614s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 614s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 614s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 614s invoke-rc.d: policy-rc.d denied execution of try-restart. 614s Reading package lists... 615s Building dependency tree... 615s Reading state information... 615s linux-generic is already the newest version (6.8.0-11.11+1). 615s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 615s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 615s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 615s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 617s Reading package lists... 617s Reading package lists... 618s Building dependency tree... 618s Reading state information... 618s Calculating upgrade... 618s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 618s Reading package lists... 618s Building dependency tree... 618s Reading state information... 619s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 619s autopkgtest [02:47:17]: rebooting testbed after setup commands that affected boot 774s autopkgtest [02:49:52]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 774s autopkgtest [02:49:52]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomeinfodb 775s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomeinfodb 1.38.6+dfsg-1 (dsc) [2300 B] 775s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomeinfodb 1.38.6+dfsg-1 (tar) [3261 kB] 775s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomeinfodb 1.38.6+dfsg-1 (diff) [5552 B] 775s gpgv: Signature made Tue Feb 13 12:41:34 2024 UTC 775s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 775s gpgv: issuer "tille@debian.org" 775s gpgv: Can't check signature: No public key 775s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomeinfodb_1.38.6+dfsg-1.dsc: no acceptable signature found 776s autopkgtest [02:49:54]: testing package r-bioc-genomeinfodb version 1.38.6+dfsg-1 777s autopkgtest [02:49:55]: build not needed 780s autopkgtest [02:49:58]: test pkg-r-autopkgtest: preparing testbed 785s Note, using file '/tmp/autopkgtest.VoOSef/1-autopkgtest-satdep.dsc' to get the build dependencies 785s Reading package lists... 786s Building dependency tree... 786s Reading state information... 786s Starting pkgProblemResolver with broken count: 0 786s Starting 2 pkgProblemResolver with broken count: 0 786s Done 787s The following NEW packages will be installed: 787s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 787s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 787s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 787s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 787s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 787s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 787s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 787s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 787s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 787s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 787s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 787s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 787s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 787s libjs-highlight.js libjs-jquery libjs-jquery-datatables 787s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 787s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 787s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 787s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 787s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 787s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 787s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 787s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 787s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 787s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 787s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 787s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 787s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 787s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 787s r-base-dev r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache 787s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 787s r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 787s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 787s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 787s r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 787s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 787s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 787s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 787s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 787s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 787s r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr 787s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 787s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 787s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 787s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 787s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 787s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix 787s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 787s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 787s r-cran-progress r-cran-promises r-cran-purrr r-cran-r.methodss3 r-cran-r.oo 787s r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl 787s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 787s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 787s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 787s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 787s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 787s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 787s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 787s 0 upgraded, 280 newly installed, 0 to remove and 0 not upgraded. 787s Need to get 434 MB of archives. 787s After this operation, 1356 MB of additional disk space will be used. 787s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 787s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 787s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 787s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 787s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 787s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 787s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 787s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 787s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 787s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 787s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 787s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 787s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 787s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 787s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 787s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 787s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 787s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 787s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 787s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 787s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 787s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 787s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 787s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 787s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 787s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 787s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 787s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 787s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 787s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 787s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 787s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 787s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 787s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 787s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 787s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 787s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 787s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 787s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 787s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 787s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 787s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 787s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 787s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 787s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 787s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 787s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 787s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 787s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 787s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 787s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 787s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 787s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 787s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 787s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 787s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 787s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 787s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 787s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 788s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 788s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 788s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 788s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 788s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 788s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 788s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 788s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 788s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 788s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 788s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 788s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 788s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 788s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 788s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 788s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 788s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 788s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 788s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 788s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 788s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 788s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 788s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 788s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 788s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 788s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 788s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 788s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 788s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 788s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 788s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 788s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 788s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 788s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 788s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 788s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 788s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 788s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 788s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 788s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 788s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 788s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 788s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 788s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 788s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 788s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 788s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 788s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 788s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 788s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 788s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 788s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 788s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 788s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 788s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 788s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 788s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 788s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 788s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 788s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 788s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 788s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 788s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 788s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 788s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 788s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 788s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 788s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 788s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 788s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 788s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 788s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 788s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 788s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 788s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 788s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 788s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 788s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 788s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 788s Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 788s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 788s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 788s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 788s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 788s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 788s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 788s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 788s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 788s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 788s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 788s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 788s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 788s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 788s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 788s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 788s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 788s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 788s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 788s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 788s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 788s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 788s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 788s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 788s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 788s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 788s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 788s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 788s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 788s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 788s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 788s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 788s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 788s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 788s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 788s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 788s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 788s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 788s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 788s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 788s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 788s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 788s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 788s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 788s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 788s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 788s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 789s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 789s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 789s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 789s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 789s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 789s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 789s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 789s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 789s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 789s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 789s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 789s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 789s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 789s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 789s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 789s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 789s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 789s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 789s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 789s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 789s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 789s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 789s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 789s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 789s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 789s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 789s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 789s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 789s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 789s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 789s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 789s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 789s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 789s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 789s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 789s Get:221 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 789s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 789s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 789s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 789s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 789s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 789s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 789s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 789s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 789s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 789s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 789s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 789s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 789s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 789s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 789s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 789s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 789s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 789s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 789s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 789s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 789s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 789s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 789s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 789s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 789s Get:246 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 789s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 789s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 789s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 789s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 790s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 790s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 790s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 790s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 790s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 790s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 790s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 790s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 790s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 790s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 790s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 790s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 790s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 790s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 790s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 790s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 790s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 790s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 790s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 790s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 790s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 790s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 790s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 790s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 790s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 790s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-data.table amd64 1.14.10+dfsg-1 [1837 kB] 790s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 790s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.oo all 1.26.0-1 [955 kB] 790s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.utils all 2.12.3-1 [1386 kB] 790s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 790s Preconfiguring packages ... 791s Fetched 434 MB in 3s (142 MB/s) 791s Selecting previously unselected package libc-dev-bin. 791s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 791s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 791s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 791s Selecting previously unselected package linux-libc-dev:amd64. 791s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 791s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 791s Selecting previously unselected package libcrypt-dev:amd64. 791s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 791s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 791s Selecting previously unselected package libtirpc-dev:amd64. 791s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 791s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 791s Selecting previously unselected package libnsl-dev:amd64. 791s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 791s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 791s Selecting previously unselected package rpcsvc-proto. 791s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 791s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 791s Selecting previously unselected package libc6-dev:amd64. 791s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 791s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 791s Selecting previously unselected package libisl23:amd64. 791s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 791s Unpacking libisl23:amd64 (0.26-3) ... 791s Selecting previously unselected package libmpc3:amd64. 791s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 791s Unpacking libmpc3:amd64 (1.3.1-1) ... 791s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 791s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 791s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 792s Selecting previously unselected package cpp-13. 792s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 792s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 792s Selecting previously unselected package cpp-x86-64-linux-gnu. 792s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 792s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 792s Selecting previously unselected package cpp. 792s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 792s Unpacking cpp (4:13.2.0-7ubuntu1) ... 792s Selecting previously unselected package libcc1-0:amd64. 792s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 792s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 792s Selecting previously unselected package libgomp1:amd64. 792s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 792s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 792s Selecting previously unselected package libitm1:amd64. 792s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 792s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 792s Selecting previously unselected package libatomic1:amd64. 792s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 792s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 792s Selecting previously unselected package libasan8:amd64. 792s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 792s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 792s Selecting previously unselected package liblsan0:amd64. 792s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 792s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 792s Selecting previously unselected package libtsan2:amd64. 792s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 792s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 792s Selecting previously unselected package libubsan1:amd64. 792s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 792s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 792s Selecting previously unselected package libhwasan0:amd64. 792s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 792s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 792s Selecting previously unselected package libquadmath0:amd64. 792s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 792s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 792s Selecting previously unselected package libgcc-13-dev:amd64. 792s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 792s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 792s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 792s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 792s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 793s Selecting previously unselected package gcc-13. 793s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 793s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 793s Selecting previously unselected package gcc-x86-64-linux-gnu. 793s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 793s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 793s Selecting previously unselected package gcc. 793s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 793s Unpacking gcc (4:13.2.0-7ubuntu1) ... 793s Selecting previously unselected package libstdc++-13-dev:amd64. 793s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 793s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 793s Selecting previously unselected package g++-13-x86-64-linux-gnu. 793s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 793s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 793s Selecting previously unselected package g++-13. 793s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 793s Unpacking g++-13 (13.2.0-17ubuntu2) ... 793s Selecting previously unselected package g++-x86-64-linux-gnu. 793s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 793s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 793s Selecting previously unselected package g++. 793s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 793s Unpacking g++ (4:13.2.0-7ubuntu1) ... 793s Selecting previously unselected package build-essential. 793s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 793s Unpacking build-essential (12.10ubuntu1) ... 793s Selecting previously unselected package dctrl-tools. 793s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 793s Unpacking dctrl-tools (2.24-3build2) ... 793s Selecting previously unselected package fonts-dejavu-mono. 793s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 793s Unpacking fonts-dejavu-mono (2.37-8) ... 793s Selecting previously unselected package fonts-dejavu-core. 793s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 793s Unpacking fonts-dejavu-core (2.37-8) ... 793s Selecting previously unselected package fontconfig-config. 793s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 794s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 794s Selecting previously unselected package libfontconfig1:amd64. 794s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 794s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 794s Selecting previously unselected package fontconfig. 794s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 794s Unpacking fontconfig (2.15.0-1ubuntu1) ... 794s Selecting previously unselected package fonts-font-awesome. 794s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 794s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 794s Selecting previously unselected package fonts-glyphicons-halflings. 794s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 794s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 794s Selecting previously unselected package fonts-lmodern. 794s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 794s Unpacking fonts-lmodern (2.005-1) ... 794s Selecting previously unselected package fonts-mathjax. 794s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 794s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 794s Selecting previously unselected package libgfortran5:amd64. 794s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 794s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 794s Selecting previously unselected package libgfortran-13-dev:amd64. 794s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 794s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 794s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 794s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 794s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 795s Selecting previously unselected package gfortran-13. 795s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 795s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 795s Selecting previously unselected package gfortran-x86-64-linux-gnu. 795s Preparing to unpack .../048-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 795s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 795s Selecting previously unselected package gfortran. 795s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 795s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 795s Selecting previously unselected package icu-devtools. 795s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_amd64.deb ... 795s Unpacking icu-devtools (74.2-1ubuntu1) ... 795s Selecting previously unselected package javascript-common. 795s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 795s Unpacking javascript-common (11+nmu1) ... 795s Selecting previously unselected package libio-string-perl. 795s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 795s Unpacking libio-string-perl (1.08-4) ... 795s Selecting previously unselected package liblatex-tounicode-perl. 795s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 795s Unpacking liblatex-tounicode-perl (0.54-2) ... 795s Selecting previously unselected package libbibtex-parser-perl. 795s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 795s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 795s Selecting previously unselected package libblas3:amd64. 795s Preparing to unpack .../055-libblas3_3.12.0-3_amd64.deb ... 795s Unpacking libblas3:amd64 (3.12.0-3) ... 795s Selecting previously unselected package libblas-dev:amd64. 795s Preparing to unpack .../056-libblas-dev_3.12.0-3_amd64.deb ... 795s Unpacking libblas-dev:amd64 (3.12.0-3) ... 795s Selecting previously unselected package libboost1.83-dev:amd64. 795s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 795s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 797s Selecting previously unselected package libboost-dev:amd64. 797s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 797s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ... 797s Selecting previously unselected package libbz2-dev:amd64. 797s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 797s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 797s Selecting previously unselected package libpixman-1-0:amd64. 797s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_amd64.deb ... 797s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 797s Selecting previously unselected package libxcb-render0:amd64. 797s Preparing to unpack .../061-libxcb-render0_1.15-1_amd64.deb ... 797s Unpacking libxcb-render0:amd64 (1.15-1) ... 798s Selecting previously unselected package libxcb-shm0:amd64. 798s Preparing to unpack .../062-libxcb-shm0_1.15-1_amd64.deb ... 798s Unpacking libxcb-shm0:amd64 (1.15-1) ... 798s Selecting previously unselected package libxrender1:amd64. 798s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 798s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 798s Selecting previously unselected package libcairo2:amd64. 798s Preparing to unpack .../064-libcairo2_1.18.0-1_amd64.deb ... 798s Unpacking libcairo2:amd64 (1.18.0-1) ... 798s Selecting previously unselected package libdatrie1:amd64. 798s Preparing to unpack .../065-libdatrie1_0.2.13-3_amd64.deb ... 798s Unpacking libdatrie1:amd64 (0.2.13-3) ... 798s Selecting previously unselected package libdeflate0:amd64. 798s Preparing to unpack .../066-libdeflate0_1.19-1_amd64.deb ... 798s Unpacking libdeflate0:amd64 (1.19-1) ... 798s Selecting previously unselected package libgraphite2-3:amd64. 798s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_amd64.deb ... 798s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 798s Selecting previously unselected package libharfbuzz0b:amd64. 798s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_amd64.deb ... 798s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 798s Selecting previously unselected package x11-common. 798s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 798s Unpacking x11-common (1:7.7+23ubuntu2) ... 798s Selecting previously unselected package libice6:amd64. 798s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_amd64.deb ... 798s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 798s Selecting previously unselected package libicu-dev:amd64. 798s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_amd64.deb ... 798s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 798s Selecting previously unselected package libjpeg-turbo8:amd64. 798s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 798s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 798s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 798s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 798s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 798s Selecting previously unselected package libjpeg8:amd64. 798s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_amd64.deb ... 798s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 798s Selecting previously unselected package libjpeg8-dev:amd64. 798s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 798s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 798s Selecting previously unselected package libjpeg-dev:amd64. 798s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 798s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 798s Selecting previously unselected package libjs-bootstrap. 798s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 798s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 798s Selecting previously unselected package libjs-popper.js. 798s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 798s Unpacking libjs-popper.js (1.16.1+ds-6) ... 798s Selecting previously unselected package libjs-bootstrap4. 798s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 798s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 799s Selecting previously unselected package libjs-d3. 799s 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previously unselected package libpangoft2-1.0-0:amd64. 800s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 800s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 800s Selecting previously unselected package libpangocairo-1.0-0:amd64. 800s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 800s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 800s Selecting previously unselected package libpaper1:amd64. 800s Preparing to unpack .../103-libpaper1_1.1.29_amd64.deb ... 800s Unpacking libpaper1:amd64 (1.1.29) ... 800s Selecting previously unselected package libpaper-utils. 800s Preparing to unpack .../104-libpaper-utils_1.1.29_amd64.deb ... 800s Unpacking libpaper-utils (1.1.29) ... 800s Selecting previously unselected package libpcre2-16-0:amd64. 800s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 800s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 800s Selecting previously unselected package 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802s Unpacking pkgconf-bin (1.8.1-2) ... 802s Selecting previously unselected package pkgconf:amd64. 802s Preparing to unpack .../139-pkgconf_1.8.1-2_amd64.deb ... 802s Unpacking pkgconf:amd64 (1.8.1-2) ... 802s Selecting previously unselected package pkg-config:amd64. 802s Preparing to unpack .../140-pkg-config_1.8.1-2_amd64.deb ... 802s Unpacking pkg-config:amd64 (1.8.1-2) ... 802s Selecting previously unselected package zip. 802s Preparing to unpack .../141-zip_3.0-13_amd64.deb ... 802s Unpacking zip (3.0-13) ... 802s Selecting previously unselected package unzip. 802s Preparing to unpack .../142-unzip_6.0-28ubuntu3_amd64.deb ... 802s Unpacking unzip (6.0-28ubuntu3) ... 802s Selecting previously unselected package xdg-utils. 802s Preparing to unpack .../143-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 802s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 802s Selecting previously unselected package r-base-core. 802s Preparing to unpack .../144-r-base-core_4.3.2-1build1_amd64.deb ... 802s Unpacking r-base-core (4.3.2-1build1) ... 803s Selecting previously unselected package liblzma-dev:amd64. 803s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_amd64.deb ... 803s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 803s Selecting previously unselected package r-base-dev. 803s Preparing to unpack .../146-r-base-dev_4.3.2-1build1_all.deb ... 803s Unpacking r-base-dev (4.3.2-1build1) ... 803s Selecting previously unselected package pkg-r-autopkgtest. 803s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 803s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 803s Selecting previously unselected package r-bioc-biocgenerics. 803s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 803s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 803s Selecting previously unselected package r-bioc-biobase. 803s Preparing to unpack .../149-r-bioc-biobase_2.62.0-1_amd64.deb ... 803s Unpacking r-bioc-biobase (2.62.0-1) ... 803s Selecting previously unselected package r-bioc-s4vectors. 803s Preparing to unpack .../150-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 803s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 803s Selecting previously unselected package r-bioc-iranges. 803s Preparing to unpack .../151-r-bioc-iranges_2.36.0-1_amd64.deb ... 803s Unpacking r-bioc-iranges (2.36.0-1) ... 803s Selecting previously unselected package r-cran-dbi. 803s Preparing to unpack .../152-r-cran-dbi_1.2.2-1_all.deb ... 803s Unpacking r-cran-dbi (1.2.2-1) ... 803s Selecting previously unselected package r-cran-bit. 803s Preparing to unpack .../153-r-cran-bit_4.0.5-1_amd64.deb ... 803s Unpacking r-cran-bit (4.0.5-1) ... 803s Selecting previously unselected package r-cran-bit64. 803s Preparing to unpack .../154-r-cran-bit64_4.0.5-1_amd64.deb ... 803s Unpacking r-cran-bit64 (4.0.5-1) ... 803s Selecting previously unselected package r-cran-rlang. 803s Preparing to unpack .../155-r-cran-rlang_1.1.3-1_amd64.deb ... 803s Unpacking r-cran-rlang (1.1.3-1) ... 803s Selecting previously unselected package r-cran-cli. 803s Preparing to unpack .../156-r-cran-cli_3.6.2-1_amd64.deb ... 803s Unpacking r-cran-cli (3.6.2-1) ... 803s Selecting previously unselected package r-cran-glue. 803s Preparing to unpack .../157-r-cran-glue_1.7.0-1_amd64.deb ... 803s Unpacking r-cran-glue (1.7.0-1) ... 803s Selecting previously unselected package r-cran-lifecycle. 803s Preparing to unpack .../158-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 803s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 803s Selecting previously unselected package r-cran-vctrs. 803s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_amd64.deb ... 803s Unpacking r-cran-vctrs (0.6.5-1) ... 804s Selecting previously unselected package r-cran-blob. 804s Preparing to unpack .../160-r-cran-blob_1.2.4-1_all.deb ... 804s Unpacking r-cran-blob (1.2.4-1) ... 804s Selecting previously unselected package r-cran-fastmap. 804s Preparing to unpack .../161-r-cran-fastmap_1.1.1-1_amd64.deb ... 804s Unpacking r-cran-fastmap (1.1.1-1) ... 804s Selecting previously unselected package r-cran-cachem. 804s Preparing to unpack .../162-r-cran-cachem_1.0.8-1_amd64.deb ... 804s Unpacking r-cran-cachem (1.0.8-1) ... 804s Selecting previously unselected package r-cran-memoise. 804s Preparing to unpack .../163-r-cran-memoise_2.0.1-1_all.deb ... 804s Unpacking r-cran-memoise (2.0.1-1) ... 804s Selecting previously unselected package r-cran-pkgconfig. 804s Preparing to unpack .../164-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 804s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 804s Selecting previously unselected package r-cran-plogr. 804s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build1_all.deb ... 804s Unpacking r-cran-plogr (0.2.0-3build1) ... 804s Selecting previously unselected package r-cran-cpp11. 804s Preparing to unpack .../166-r-cran-cpp11_0.4.7-1_all.deb ... 804s Unpacking r-cran-cpp11 (0.4.7-1) ... 804s Selecting previously unselected package r-cran-rsqlite. 804s Preparing to unpack .../167-r-cran-rsqlite_2.3.4-1_amd64.deb ... 804s Unpacking r-cran-rsqlite (2.3.4-1) ... 804s Selecting previously unselected package r-cran-curl. 804s Preparing to unpack .../168-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 804s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 804s Selecting previously unselected package r-cran-jsonlite. 804s Preparing to unpack .../169-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 804s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 804s Selecting previously unselected package r-cran-mime. 807s Preparing to unpack .../170-r-cran-mime_0.12-1_amd64.deb ... 807s Unpacking r-cran-mime (0.12-1) ... 807s Selecting previously unselected package r-cran-sys. 807s Preparing to unpack .../171-r-cran-sys_3.4.2-1_amd64.deb ... 807s Unpacking r-cran-sys (3.4.2-1) ... 807s Selecting previously unselected package r-cran-askpass. 807s Preparing to unpack .../172-r-cran-askpass_1.2.0-1_amd64.deb ... 807s Unpacking r-cran-askpass (1.2.0-1) ... 807s Selecting previously unselected package r-cran-openssl. 807s Preparing to unpack .../173-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 807s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 807s Selecting previously unselected package r-cran-r6. 807s Preparing to unpack .../174-r-cran-r6_2.5.1-1_all.deb ... 807s Unpacking r-cran-r6 (2.5.1-1) ... 807s Selecting previously unselected package r-cran-httr. 807s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ... 807s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 807s Selecting previously unselected package r-cran-png. 807s Preparing to unpack .../176-r-cran-png_0.1-8-1_amd64.deb ... 807s Unpacking r-cran-png (0.1-8-1) ... 807s Selecting previously unselected package r-bioc-zlibbioc. 807s Preparing to unpack .../177-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 807s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 807s Selecting previously unselected package r-bioc-xvector. 807s Preparing to unpack .../178-r-bioc-xvector_0.42.0-1_amd64.deb ... 807s Unpacking r-bioc-xvector (0.42.0-1) ... 807s Selecting previously unselected package r-cran-bitops. 807s Preparing to unpack .../179-r-cran-bitops_1.0-7-1_amd64.deb ... 807s Unpacking r-cran-bitops (1.0-7-1) ... 807s Selecting previously unselected package r-cran-rcurl. 807s Preparing to unpack .../180-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 807s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 807s Selecting previously unselected package r-bioc-genomeinfodbdata. 807s Preparing to unpack .../181-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 807s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 807s Selecting previously unselected package r-bioc-genomeinfodb. 807s Preparing to unpack .../182-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 807s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 807s Selecting previously unselected package r-cran-crayon. 807s Preparing to unpack .../183-r-cran-crayon_1.5.2-1_all.deb ... 807s Unpacking r-cran-crayon (1.5.2-1) ... 807s Selecting previously unselected package r-bioc-biostrings. 807s Preparing to unpack .../184-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 807s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 807s Selecting previously unselected package r-bioc-keggrest. 807s Preparing to unpack .../185-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 807s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 807s Selecting previously unselected package r-bioc-annotationdbi. 807s Preparing to unpack .../186-r-bioc-annotationdbi_1.64.1-1_all.deb ... 807s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 807s Selecting previously unselected package r-cran-generics. 807s Preparing to unpack .../187-r-cran-generics_0.1.3-1_all.deb ... 807s Unpacking r-cran-generics (0.1.3-1) ... 807s Selecting previously unselected package r-cran-magrittr. 807s Preparing to unpack .../188-r-cran-magrittr_2.0.3-1_amd64.deb ... 807s Unpacking r-cran-magrittr (2.0.3-1) ... 807s Selecting previously unselected package r-cran-fansi. 807s Preparing to unpack .../189-r-cran-fansi_1.0.5-1_amd64.deb ... 807s Unpacking r-cran-fansi (1.0.5-1) ... 807s Selecting previously unselected package r-cran-utf8. 807s Preparing to unpack .../190-r-cran-utf8_1.2.4-1_amd64.deb ... 807s Unpacking r-cran-utf8 (1.2.4-1) ... 807s Selecting previously unselected package r-cran-pillar. 807s Preparing to unpack .../191-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 807s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 807s Selecting previously unselected package r-cran-tibble. 807s Preparing to unpack .../192-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 807s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 807s Selecting previously unselected package r-cran-withr. 807s Preparing to unpack .../193-r-cran-withr_2.5.0-1_all.deb ... 807s Unpacking r-cran-withr (2.5.0-1) ... 807s Selecting previously unselected package r-cran-tidyselect. 807s Preparing to unpack .../194-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 807s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 807s Selecting previously unselected package r-cran-dplyr. 807s Preparing to unpack .../195-r-cran-dplyr_1.1.4-1_amd64.deb ... 807s Unpacking r-cran-dplyr (1.1.4-1) ... 807s Selecting previously unselected package r-cran-purrr. 807s Preparing to unpack .../196-r-cran-purrr_1.0.2-1_amd64.deb ... 807s Unpacking r-cran-purrr (1.0.2-1) ... 807s Selecting previously unselected package r-cran-stringi. 807s Preparing to unpack .../197-r-cran-stringi_1.8.3-1_amd64.deb ... 807s Unpacking r-cran-stringi (1.8.3-1) ... 807s Selecting previously unselected package r-cran-stringr. 807s Preparing to unpack .../198-r-cran-stringr_1.5.1-1_all.deb ... 807s Unpacking r-cran-stringr (1.5.1-1) ... 807s Selecting previously unselected package r-cran-tidyr. 807s Preparing to unpack .../199-r-cran-tidyr_1.3.1-1_amd64.deb ... 807s Unpacking r-cran-tidyr (1.3.1-1) ... 807s Selecting previously unselected package r-cran-dbplyr. 807s Preparing to unpack .../200-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 807s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 807s Selecting previously unselected package r-cran-filelock. 807s Preparing to unpack .../201-r-cran-filelock_1.0.3-1_amd64.deb ... 807s Unpacking r-cran-filelock (1.0.3-1) ... 807s Selecting previously unselected package r-bioc-biocfilecache. 807s Preparing to unpack .../202-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 807s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 807s Selecting previously unselected package r-bioc-biocio. 807s Preparing to unpack .../203-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 807s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 807s Selecting previously unselected package r-cran-formatr. 807s Preparing to unpack .../204-r-cran-formatr_1.14-1_all.deb ... 807s Unpacking r-cran-formatr (1.14-1) ... 807s Selecting previously unselected package r-cran-lambda.r. 807s Preparing to unpack .../205-r-cran-lambda.r_1.2.4-2build1_all.deb ... 807s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 807s Selecting previously unselected package r-cran-futile.options. 807s Preparing to unpack .../206-r-cran-futile.options_1.0.1-3build1_all.deb ... 807s Unpacking r-cran-futile.options (1.0.1-3build1) ... 807s Selecting previously unselected package r-cran-futile.logger. 807s Preparing to unpack .../207-r-cran-futile.logger_1.4.3-4build1_all.deb ... 807s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 807s Selecting previously unselected package r-cran-snow. 807s Preparing to unpack .../208-r-cran-snow_1%3a0.4.4-2_all.deb ... 807s Unpacking r-cran-snow (1:0.4.4-2) ... 807s Selecting previously unselected package r-cran-codetools. 807s Preparing to unpack .../209-r-cran-codetools_0.2-19-1_all.deb ... 807s Unpacking r-cran-codetools (0.2-19-1) ... 807s Selecting previously unselected package r-cran-bh. 807s Preparing to unpack .../210-r-cran-bh_1.84.0-1_all.deb ... 807s Unpacking r-cran-bh (1.84.0-1) ... 807s Selecting previously unselected package r-bioc-biocparallel. 807s Preparing to unpack .../211-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 807s Unpacking r-bioc-biocparallel (1.36.0-1) ... 807s Selecting previously unselected package r-cran-base64enc. 807s Preparing to unpack .../212-r-cran-base64enc_0.1-3-3_amd64.deb ... 807s Unpacking r-cran-base64enc (0.1-3-3) ... 807s Selecting previously unselected package r-cran-digest. 807s Preparing to unpack .../213-r-cran-digest_0.6.34-1_amd64.deb ... 807s Unpacking r-cran-digest (0.6.34-1) ... 807s Selecting previously unselected package r-cran-ellipsis. 807s Preparing to unpack .../214-r-cran-ellipsis_0.3.2-2_amd64.deb ... 807s Unpacking r-cran-ellipsis (0.3.2-2) ... 807s Selecting previously unselected package r-cran-htmltools. 807s Preparing to unpack .../215-r-cran-htmltools_0.5.7-1_amd64.deb ... 807s Unpacking r-cran-htmltools (0.5.7-1) ... 807s Selecting previously unselected package r-cran-evaluate. 807s Preparing to unpack .../216-r-cran-evaluate_0.23-1_all.deb ... 807s Unpacking r-cran-evaluate (0.23-1) ... 807s Selecting previously unselected package r-cran-xfun. 807s Preparing to unpack .../217-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 807s Unpacking r-cran-xfun (0.41+dfsg-1) ... 807s Selecting previously unselected package r-cran-highr. 807s Preparing to unpack .../218-r-cran-highr_0.10+dfsg-1_all.deb ... 807s Unpacking r-cran-highr (0.10+dfsg-1) ... 807s Selecting previously unselected package r-cran-yaml. 807s Preparing to unpack .../219-r-cran-yaml_2.3.8-1_amd64.deb ... 807s Unpacking r-cran-yaml (2.3.8-1) ... 807s Selecting previously unselected package libjs-mathjax. 807s Preparing to unpack .../220-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 807s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 807s Selecting previously unselected package r-cran-knitr. 807s Preparing to unpack .../221-r-cran-knitr_1.45+dfsg-1_all.deb ... 807s Unpacking r-cran-knitr (1.45+dfsg-1) ... 807s Selecting previously unselected package r-cran-jquerylib. 807s Preparing to unpack .../222-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 807s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 807s Selecting previously unselected package r-cran-fs. 807s Preparing to unpack .../223-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 807s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 807s Selecting previously unselected package r-cran-rappdirs. 807s Preparing to unpack .../224-r-cran-rappdirs_0.3.3-1_amd64.deb ... 807s Unpacking r-cran-rappdirs (0.3.3-1) ... 807s Selecting previously unselected package r-cran-sass. 807s Preparing to unpack .../225-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 807s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 807s Selecting previously unselected package r-cran-bslib. 807s Preparing to unpack .../226-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 807s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 808s Selecting previously unselected package r-cran-fontawesome. 808s Preparing to unpack .../227-r-cran-fontawesome_0.5.2-1_all.deb ... 808s Unpacking r-cran-fontawesome (0.5.2-1) ... 808s Selecting previously unselected package r-cran-tinytex. 808s Preparing to unpack .../228-r-cran-tinytex_0.49-1_all.deb ... 808s Unpacking r-cran-tinytex (0.49-1) ... 808s Selecting previously unselected package libjs-modernizr. 808s Preparing to unpack .../229-libjs-modernizr_2.6.2+ds1-5_all.deb ... 808s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 808s Selecting previously unselected package r-cran-littler. 808s Preparing to unpack .../230-r-cran-littler_0.3.19-1_amd64.deb ... 808s Unpacking r-cran-littler (0.3.19-1) ... 808s Selecting previously unselected package r-cran-pkgkitten. 808s Preparing to unpack .../231-r-cran-pkgkitten_0.2.3-1_all.deb ... 808s Unpacking r-cran-pkgkitten (0.2.3-1) ... 808s Selecting previously unselected package r-cran-rcpp. 808s Preparing to unpack .../232-r-cran-rcpp_1.0.12-1_amd64.deb ... 808s Unpacking r-cran-rcpp (1.0.12-1) ... 808s Selecting previously unselected package r-cran-later. 808s Preparing to unpack .../233-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 808s Unpacking r-cran-later (1.3.2+dfsg-1) ... 808s Selecting previously unselected package r-cran-promises. 808s 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(5.2.0+dfsg-1) ... 821s Setting up r-cran-codetools (0.2-19-1) ... 821s Setting up g++-13 (13.2.0-17ubuntu2) ... 821s Setting up r-bioc-biocgenerics (0.48.1-2) ... 821s Setting up r-cran-rlang (1.1.3-1) ... 821s Setting up r-cran-matrixstats (1.2.0-1) ... 821s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 821s Setting up r-cran-xfun (0.41+dfsg-1) ... 821s Setting up r-cran-sys (3.4.2-1) ... 821s Setting up r-cran-plogr (0.2.0-3build1) ... 821s Setting up r-cran-withr (2.5.0-1) ... 821s Setting up r-cran-mime (0.12-1) ... 821s Setting up r-cran-generics (0.1.3-1) ... 821s Setting up r-cran-base64enc (0.1-3-3) ... 821s Setting up r-cran-abind (1.4-5-2) ... 821s Setting up r-cran-digest (0.6.34-1) ... 821s Setting up r-cran-yaml (2.3.8-1) ... 821s Setting up r-cran-lambda.r (1.2.4-2build1) ... 821s Setting up r-cran-evaluate (0.23-1) ... 821s Setting up r-cran-dbi (1.2.2-1) ... 821s Setting up r-cran-highr (0.10+dfsg-1) ... 821s Setting up r-cran-prettyunits (1.2.0-1) ... 821s Setting up r-cran-fansi (1.0.5-1) ... 821s Setting up r-cran-snow (1:0.4.4-2) ... 821s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 821s Setting up r-cran-glue (1.7.0-1) ... 821s Setting up r-cran-bit (4.0.5-1) ... 821s Setting up r-cran-xtable (1:1.8-4-2) ... 821s Setting up r-cran-cli (3.6.2-1) ... 821s Setting up gfortran (4:13.2.0-7ubuntu1) ... 821s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 821s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 821s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 821s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 821s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 821s Setting up r-cran-bitops (1.0-7-1) ... 821s Setting up r-cran-bit64 (4.0.5-1) ... 821s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 821s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 821s Setting up r-cran-askpass (1.2.0-1) ... 821s Setting up r-cran-fastmap (1.1.1-1) ... 821s Setting up r-cran-png (0.1-8-1) ... 821s Setting up r-cran-r.methodss3 (1.8.2-1) ... 821s Setting up r-bioc-biobase (2.62.0-1) ... 821s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 821s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 821s Setting up r-cran-utf8 (1.2.4-1) ... 821s Setting up r-cran-stringi (1.8.3-1) ... 821s Setting up texlive-latex-base (2023.20240207-1) ... 821s Setting up r-cran-cpp11 (0.4.7-1) ... 821s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 821s Setting up r-cran-runit (0.4.33-1) ... 821s Setting up r-cran-futile.logger (1.4.3-4build1) ... 821s Setting up r-cran-later (1.3.2+dfsg-1) ... 821s Setting up r-cran-matrix (1.6-5-1) ... 821s Setting up r-cran-tinytex (0.49-1) ... 821s Setting up r-cran-knitr (1.45+dfsg-1) ... 821s Setting up g++ (4:13.2.0-7ubuntu1) ... 821s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 821s Setting up r-cran-cachem (1.0.8-1) ... 821s Setting up build-essential (12.10ubuntu1) ... 821s Setting up r-bioc-iranges (2.36.0-1) ... 821s Setting up r-cran-rjson (0.2.21-1) ... 821s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 821s Setting up r-cran-restfulr (0.0.15-1) ... 821s Setting up r-cran-vctrs (0.6.5-1) ... 821s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 821s Setting up r-cran-ellipsis (0.3.2-2) ... 821s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 821s Setting up r-base-dev (4.3.2-1build1) ... 821s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 821s Setting up r-cran-stringr (1.5.1-1) ... 821s Setting up r-bioc-biocparallel (1.36.0-1) ... 821s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 821s Setting up r-cran-xml2 (1.3.6-1) ... 821s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 821s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 821s Setting up r-cran-r.oo (1.26.0-1) ... 821s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 821s Setting up texlive-bibtex-extra (2023.20240207-1) ... 821s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 821s Setting up r-cran-httr (1.4.7+dfsg-1) ... 821s Setting up r-cran-hms (1.1.3-1) ... 821s Setting up r-cran-memoise (2.0.1-1) ... 821s Setting up r-cran-promises (1.2.1+dfsg-1) ... 821s Setting up r-cran-purrr (1.0.2-1) ... 821s Setting up r-cran-blob (1.2.4-1) ... 821s Setting up r-cran-htmltools (0.5.7-1) ... 821s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 821s Setting up r-bioc-xvector (0.42.0-1) ... 821s Setting up r-cran-sass (0.4.8+dfsg-1) ... 821s Setting up r-cran-dplyr (1.1.4-1) ... 821s Setting up r-cran-rsqlite (2.3.4-1) ... 821s Setting up r-cran-progress (1.2.3-1) ... 821s Setting up r-cran-r.utils (2.12.3-1) ... 821s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 821s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 821s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 821s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 821s Setting up r-cran-fontawesome (0.5.2-1) ... 821s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 821s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 821s Setting up r-cran-tidyr (1.3.1-1) ... 821s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 821s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 821s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 821s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 821s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 821s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 821s Setting up r-bioc-annotationdbi (1.64.1-1) ... 821s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 821s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 821s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 821s Setting up r-bioc-genomicalignments (1.38.2-1) ... 821s Setting up r-cran-bookdown (0.37+dfsg-1) ... 821s Setting up r-bioc-rtracklayer (1.62.0-1) ... 821s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 821s Setting up r-bioc-bsgenome (1.70.2-1) ... 821s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 821s Processing triggers for libc-bin (2.39-0ubuntu2) ... 821s Processing triggers for man-db (2.12.0-3) ... 823s Processing triggers for install-info (7.1-3) ... 823s Processing triggers for tex-common (6.18) ... 823s Running updmap-sys. This may take some time... done. 823s Running mktexlsr /var/lib/texmf ... done. 823s Building format(s) --all. 854s This may take some time... done. 856s Reading package lists... 856s Building dependency tree... 856s Reading state information... 856s Starting pkgProblemResolver with broken count: 0 856s Starting 2 pkgProblemResolver with broken count: 0 856s Done 857s The following NEW packages will be installed: 857s autopkgtest-satdep 857s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 857s Need to get 0 B/696 B of archives. 857s After this operation, 0 B of additional disk space will be used. 857s Get:1 /tmp/autopkgtest.VoOSef/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 857s Selecting previously unselected package autopkgtest-satdep. 857s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121333 files and directories currently installed.) 857s Preparing to unpack .../2-autopkgtest-satdep.deb ... 857s Unpacking autopkgtest-satdep (0) ... 857s Setting up autopkgtest-satdep (0) ... 859s (Reading database ... 121333 files and directories currently installed.) 859s Removing autopkgtest-satdep (0) ... 859s autopkgtest [02:51:17]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 859s autopkgtest [02:51:17]: test pkg-r-autopkgtest: [----------------------- 859s Test: Try to load the R library GenomeInfoDb 859s 859s R version 4.3.2 (2023-10-31) -- "Eye Holes" 859s Copyright (C) 2023 The R Foundation for Statistical Computing 859s Platform: x86_64-pc-linux-gnu (64-bit) 859s 859s R is free software and comes with ABSOLUTELY NO WARRANTY. 859s You are welcome to redistribute it under certain conditions. 859s Type 'license()' or 'licence()' for distribution details. 859s 859s R is a collaborative project with many contributors. 859s Type 'contributors()' for more information and 859s 'citation()' on how to cite R or R packages in publications. 859s 859s Type 'demo()' for some demos, 'help()' for on-line help, or 859s 'help.start()' for an HTML browser interface to help. 859s Type 'q()' to quit R. 859s 859s > library('GenomeInfoDb') 859s Loading required package: BiocGenerics 859s 859s Attaching package: ‘BiocGenerics’ 859s 859s The following objects are masked from ‘package:stats’: 859s 859s IQR, mad, sd, var, xtabs 859s 859s The following objects are masked from ‘package:base’: 859s 859s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 859s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 859s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 859s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 859s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 859s table, tapply, union, unique, unsplit, which.max, which.min 859s 859s Loading required package: S4Vectors 859s Loading required package: stats4 860s 860s Attaching package: ‘S4Vectors’ 860s 860s The following object is masked from ‘package:utils’: 860s 860s findMatches 860s 860s The following objects are masked from ‘package:base’: 860s 860s expand.grid, I, unname 860s 860s Loading required package: IRanges 861s > 861s > 861s Other tests are currently unsupported! 861s They will be progressively added. 861s autopkgtest [02:51:19]: test pkg-r-autopkgtest: -----------------------] 861s pkg-r-autopkgtest PASS 861s autopkgtest [02:51:19]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 862s autopkgtest [02:51:20]: @@@@@@@@@@@@@@@@@@@@ summary 862s pkg-r-autopkgtest PASS 872s Creating nova instance adt-noble-i386-r-bioc-genomeinfodb-20240322-023657-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...