0s autopkgtest [02:36:41]: starting date and time: 2024-03-22 02:36:41+0000 0s autopkgtest [02:36:41]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [02:36:41]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.g8_tq4yi/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-geneplotter --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-58.secgroup --name adt-noble-i386-r-bioc-geneplotter-20240322-023640-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 570s autopkgtest [02:46:11]: testbed dpkg architecture: amd64 570s autopkgtest [02:46:11]: testbed apt version: 2.7.12 570s autopkgtest [02:46:11]: test architecture: i386 570s autopkgtest [02:46:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 570s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 571s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 571s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3762 kB] 571s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 571s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 571s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB] 571s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB] 571s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 571s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 571s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 571s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 571s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1269 kB] 571s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4236 kB] 571s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 571s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 571s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 571s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 574s Fetched 11.3 MB in 2s (7348 kB/s) 574s Reading package lists... 576s Reading package lists... 579s Building dependency tree... 579s Reading state information... 579s Calculating upgrade... 579s The following packages will be upgraded: 579s cloud-init fonts-ubuntu-console python3-markupsafe 579s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 579s Need to get 629 kB of archives. 579s After this operation, 11.3 kB disk space will be freed. 579s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 579s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 579s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 579s Preconfiguring packages ... 579s Fetched 629 kB in 0s (16.3 MB/s) 579s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 579s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 579s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 579s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 579s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 579s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 579s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 579s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 579s Setting up cloud-init (24.1.2-0ubuntu1) ... 580s Setting up python3-markupsafe (2.1.5-1build1) ... 580s Processing triggers for man-db (2.12.0-3) ... 580s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 581s Reading package lists... 581s Building dependency tree... 581s Reading state information... 581s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 582s sh: Attempting to set up Debian/Ubuntu apt sources automatically 582s sh: Distribution appears to be Ubuntu 583s Reading package lists... 583s Building dependency tree... 583s Reading state information... 583s eatmydata is already the newest version (131-1). 583s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 583s Reading package lists... 583s Building dependency tree... 583s Reading state information... 584s dbus is already the newest version (1.14.10-4ubuntu1). 584s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 584s Reading package lists... 584s Building dependency tree... 584s Reading state information... 584s rng-tools-debian is already the newest version (2.4). 584s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 584s Reading package lists... 585s Building dependency tree... 585s Reading state information... 585s The following packages will be REMOVED: 585s cloud-init* python3-configobj* python3-debconf* 585s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 585s After this operation, 3256 kB disk space will be freed. 585s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 585s Removing cloud-init (24.1.2-0ubuntu1) ... 586s Removing python3-configobj (5.0.8-3) ... 586s Removing python3-debconf (1.5.86) ... 586s Processing triggers for man-db (2.12.0-3) ... 587s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 587s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 587s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 587s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 587s invoke-rc.d: policy-rc.d denied execution of try-restart. 587s Reading package lists... 588s Building dependency tree... 588s Reading state information... 588s linux-generic is already the newest version (6.8.0-11.11+1). 588s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 588s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 588s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 588s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 590s Reading package lists... 590s Reading package lists... 591s Building dependency tree... 591s Reading state information... 591s Calculating upgrade... 591s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 591s Reading package lists... 591s Building dependency tree... 591s Reading state information... 592s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 592s autopkgtest [02:46:33]: rebooting testbed after setup commands that affected boot 624s autopkgtest [02:47:05]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 625s autopkgtest [02:47:06]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-geneplotter 626s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-geneplotter 1.80.0+dfsg-1 (dsc) [2271 B] 626s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-geneplotter 1.80.0+dfsg-1 (tar) [1284 kB] 626s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-geneplotter 1.80.0+dfsg-1 (diff) [3720 B] 626s gpgv: Signature made Thu Nov 30 16:55:40 2023 UTC 626s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 626s gpgv: issuer "tille@debian.org" 626s gpgv: Can't check signature: No public key 626s dpkg-source: warning: cannot verify inline signature for ./r-bioc-geneplotter_1.80.0+dfsg-1.dsc: no acceptable signature found 626s autopkgtest [02:47:07]: testing package r-bioc-geneplotter version 1.80.0+dfsg-1 630s autopkgtest [02:47:11]: build not needed 639s autopkgtest [02:47:20]: test pkg-r-autopkgtest: preparing testbed 653s Note, using file '/tmp/autopkgtest.6IojMJ/1-autopkgtest-satdep.dsc' to get the build dependencies 653s Reading package lists... 653s Building dependency tree... 653s Reading state information... 653s Starting pkgProblemResolver with broken count: 0 653s Starting 2 pkgProblemResolver with broken count: 0 653s Done 653s The following NEW packages will be installed: 653s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 653s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 653s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 653s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 653s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 653s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 653s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 653s libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 653s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 653s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 653s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 653s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 653s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 653s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 653s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 653s libjs-popper.js libjs-prettify libjs-sifter.js 653s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 653s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 653s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 653s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 653s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 653s libpotrace0 libptexenc1 libquadmath0 libreadline-dev libsharpyuv0 libsm6 653s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 653s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 653s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 653s libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass 653s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 653s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate 653s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocstyle 653s r-bioc-biostrings r-bioc-geneplotter r-bioc-genomeinfodb 653s r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-keggrest r-bioc-s4vectors 653s r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-base64enc 653s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 653s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-commonmark 653s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-digest 653s r-cran-ellipsis r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs 653s r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 653s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lattice 653s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime 653s r-cran-openssl r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png 653s r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 653s r-cran-rcurl r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-sass 653s r-cran-shiny r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys 653s r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml 653s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 653s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 653s xdg-utils zip zlib1g-dev 653s 0 upgraded, 234 newly installed, 0 to remove and 0 not upgraded. 653s Need to get 375 MB of archives. 653s After this operation, 1117 MB of additional disk space will be used. 653s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 653s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 653s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 653s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 653s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 653s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 653s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 653s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 653s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 653s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 653s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 653s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 653s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 653s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 653s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 653s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 653s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 653s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 653s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 653s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 653s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 653s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 653s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 653s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 653s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 653s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 653s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 653s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 653s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 653s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 653s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 653s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 653s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 653s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 653s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 653s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 653s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 653s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 653s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 653s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 653s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 653s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 653s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 653s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 653s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 653s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 653s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 653s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 653s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 653s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 653s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 653s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 653s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 653s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 653s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 653s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 653s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 653s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 653s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 653s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 653s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 653s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 653s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 653s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 653s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 653s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 653s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 653s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 653s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 653s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 653s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 653s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 653s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 653s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 653s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 653s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 653s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 653s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 653s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 653s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 653s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 653s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 653s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 653s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 653s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 653s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 653s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 653s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 653s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 653s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 653s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 653s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 653s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 653s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 653s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 653s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 653s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 653s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 653s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 653s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 653s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 653s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 653s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 653s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 653s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 653s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 653s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 653s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 653s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 653s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 653s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 653s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 653s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 653s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 653s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 653s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 653s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 653s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 653s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 653s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 653s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 653s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 653s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 653s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 653s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 653s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 653s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 653s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 653s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 653s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 653s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 653s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 653s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 653s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 653s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 653s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 653s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 653s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 653s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 653s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 653s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 653s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 653s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 653s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 653s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 653s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 653s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 653s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 653s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 653s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 653s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 653s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 653s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 653s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 653s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 653s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 653s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 653s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 653s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 653s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 653s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 653s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 653s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 653s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 653s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 653s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 653s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 653s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 653s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 653s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 653s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 653s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 653s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 653s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 653s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 653s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 653s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 653s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 653s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 653s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 653s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 653s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 653s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 653s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 653s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 653s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 653s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 653s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 653s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 653s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 653s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 653s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 653s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 653s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 653s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 653s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 653s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 653s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 653s Get:199 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 653s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 653s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 653s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 653s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 653s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 653s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 653s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 653s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 653s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 653s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 653s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 653s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 653s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 653s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 653s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 653s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 653s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 653s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 653s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 653s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 653s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 653s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 653s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 653s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 653s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 653s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 653s Get:226 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 653s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 653s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 653s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 653s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 653s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 653s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 653s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 653s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-geneplotter all 1.80.0+dfsg-1 [1416 kB] 653s Preconfiguring packages ... 653s Fetched 375 MB in 3s (129 MB/s) 653s Selecting previously unselected package libc-dev-bin. 653s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 653s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 653s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 653s Selecting previously unselected package linux-libc-dev:amd64. 653s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 653s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 653s Selecting previously unselected package libcrypt-dev:amd64. 653s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 653s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 653s Selecting previously unselected package libtirpc-dev:amd64. 653s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 653s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 653s Selecting previously unselected package libnsl-dev:amd64. 653s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 653s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 653s Selecting previously unselected package rpcsvc-proto. 653s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 653s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 653s Selecting previously unselected package libc6-dev:amd64. 653s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 653s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 653s Selecting previously unselected package libisl23:amd64. 653s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 653s Unpacking libisl23:amd64 (0.26-3) ... 653s Selecting previously unselected package libmpc3:amd64. 653s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 653s Unpacking libmpc3:amd64 (1.3.1-1) ... 653s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 653s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 653s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 653s Selecting previously unselected package cpp-13. 653s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 653s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 653s Selecting previously unselected package cpp-x86-64-linux-gnu. 653s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 653s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 653s Selecting previously unselected package cpp. 653s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 653s Unpacking cpp (4:13.2.0-7ubuntu1) ... 653s Selecting previously unselected package libcc1-0:amd64. 653s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 653s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 653s Selecting previously unselected package libgomp1:amd64. 653s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 653s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 653s Selecting previously unselected package libitm1:amd64. 653s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 653s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 653s Selecting previously unselected package libatomic1:amd64. 653s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 653s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 653s Selecting previously unselected package libasan8:amd64. 653s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 653s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 653s Selecting previously unselected package liblsan0:amd64. 653s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 653s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 653s Selecting previously unselected package libtsan2:amd64. 653s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 653s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 653s Selecting previously unselected package libubsan1:amd64. 653s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 653s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 653s Selecting previously unselected package libhwasan0:amd64. 653s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 653s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 653s Selecting previously unselected package libquadmath0:amd64. 653s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 653s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 653s Selecting previously unselected package libgcc-13-dev:amd64. 653s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 653s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 653s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 653s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 653s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 653s Selecting previously unselected package gcc-13. 653s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 653s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 653s Selecting previously unselected package gcc-x86-64-linux-gnu. 653s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 653s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 653s Selecting previously unselected package gcc. 653s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 653s Unpacking gcc (4:13.2.0-7ubuntu1) ... 653s Selecting previously unselected package libstdc++-13-dev:amd64. 653s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 653s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 653s Selecting previously unselected package g++-13-x86-64-linux-gnu. 653s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 653s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 653s Selecting previously unselected package g++-13. 653s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 653s Unpacking g++-13 (13.2.0-17ubuntu2) ... 653s Selecting previously unselected package g++-x86-64-linux-gnu. 653s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 653s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 653s Selecting previously unselected package g++. 653s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 653s Unpacking g++ (4:13.2.0-7ubuntu1) ... 653s Selecting previously unselected package build-essential. 653s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 653s Unpacking build-essential (12.10ubuntu1) ... 653s Selecting previously unselected package dctrl-tools. 653s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 653s Unpacking dctrl-tools (2.24-3build2) ... 653s Selecting previously unselected package fonts-dejavu-mono. 653s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 653s Unpacking fonts-dejavu-mono (2.37-8) ... 653s Selecting previously unselected package fonts-dejavu-core. 653s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 653s Unpacking fonts-dejavu-core (2.37-8) ... 653s Selecting previously unselected package fontconfig-config. 653s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 653s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 653s Selecting previously unselected package libfontconfig1:amd64. 653s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 653s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 653s Selecting previously unselected package fontconfig. 653s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 653s Unpacking fontconfig (2.15.0-1ubuntu1) ... 653s Selecting previously unselected package fonts-font-awesome. 653s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 653s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 653s Selecting previously unselected package fonts-glyphicons-halflings. 653s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 653s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 653s Selecting previously unselected package fonts-lmodern. 653s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 653s Unpacking fonts-lmodern (2.005-1) ... 653s Selecting previously unselected package fonts-mathjax. 653s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 653s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 653s Selecting previously unselected package libgfortran5:amd64. 653s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 653s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 653s Selecting previously unselected package libgfortran-13-dev:amd64. 653s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 653s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 653s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 653s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 653s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 653s Selecting previously unselected package gfortran-13. 653s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 653s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 653s Selecting previously unselected package gfortran-x86-64-linux-gnu. 653s Preparing to unpack .../048-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 653s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 653s Selecting previously unselected package gfortran. 653s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 653s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 653s Selecting previously unselected package icu-devtools. 653s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_amd64.deb ... 653s Unpacking icu-devtools (74.2-1ubuntu1) ... 653s Selecting previously unselected package javascript-common. 653s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 653s Unpacking javascript-common (11+nmu1) ... 653s Selecting previously unselected package libio-string-perl. 653s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 653s Unpacking libio-string-perl (1.08-4) ... 653s Selecting previously unselected package liblatex-tounicode-perl. 653s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 653s Unpacking liblatex-tounicode-perl (0.54-2) ... 653s Selecting previously unselected package libbibtex-parser-perl. 653s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 653s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 653s Selecting previously unselected package libblas3:amd64. 653s Preparing to unpack .../055-libblas3_3.12.0-3_amd64.deb ... 653s Unpacking libblas3:amd64 (3.12.0-3) ... 653s Selecting previously unselected package libblas-dev:amd64. 653s Preparing to unpack .../056-libblas-dev_3.12.0-3_amd64.deb ... 653s Unpacking libblas-dev:amd64 (3.12.0-3) ... 653s Selecting previously unselected package libbz2-dev:amd64. 653s Preparing to unpack .../057-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 653s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 653s Selecting previously unselected package libpixman-1-0:amd64. 653s Preparing to unpack .../058-libpixman-1-0_0.42.2-1_amd64.deb ... 653s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 653s Selecting previously unselected package libxcb-render0:amd64. 653s Preparing to unpack .../059-libxcb-render0_1.15-1_amd64.deb ... 653s Unpacking libxcb-render0:amd64 (1.15-1) ... 653s Selecting previously unselected package libxcb-shm0:amd64. 653s Preparing to unpack .../060-libxcb-shm0_1.15-1_amd64.deb ... 653s Unpacking libxcb-shm0:amd64 (1.15-1) ... 653s Selecting previously unselected package libxrender1:amd64. 653s Preparing to unpack .../061-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 653s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 653s Selecting previously unselected package libcairo2:amd64. 653s Preparing to unpack .../062-libcairo2_1.18.0-1_amd64.deb ... 653s Unpacking libcairo2:amd64 (1.18.0-1) ... 653s Selecting previously unselected package libdatrie1:amd64. 653s Preparing to unpack .../063-libdatrie1_0.2.13-3_amd64.deb ... 653s Unpacking libdatrie1:amd64 (0.2.13-3) ... 653s Selecting previously unselected package libdeflate0:amd64. 653s Preparing to unpack .../064-libdeflate0_1.19-1_amd64.deb ... 653s Unpacking libdeflate0:amd64 (1.19-1) ... 653s Selecting previously unselected package libgraphite2-3:amd64. 653s Preparing to unpack .../065-libgraphite2-3_1.3.14-2_amd64.deb ... 653s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 653s Selecting previously unselected package libharfbuzz0b:amd64. 653s Preparing to unpack .../066-libharfbuzz0b_8.3.0-2_amd64.deb ... 653s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 653s Selecting previously unselected package x11-common. 653s Preparing to unpack .../067-x11-common_1%3a7.7+23ubuntu2_all.deb ... 653s Unpacking x11-common (1:7.7+23ubuntu2) ... 653s Selecting previously unselected package libice6:amd64. 653s Preparing to unpack .../068-libice6_2%3a1.0.10-1build2_amd64.deb ... 653s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 653s Selecting previously unselected package libicu-dev:amd64. 653s Preparing to unpack .../069-libicu-dev_74.2-1ubuntu1_amd64.deb ... 653s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 653s Selecting previously unselected package libjpeg-turbo8:amd64. 653s Preparing to unpack .../070-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 653s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 653s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 653s Preparing to unpack .../071-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 653s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 653s Selecting previously unselected package libjpeg8:amd64. 653s Preparing to unpack .../072-libjpeg8_8c-2ubuntu11_amd64.deb ... 653s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 653s Selecting previously unselected package libjpeg8-dev:amd64. 653s Preparing to unpack .../073-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 653s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 653s Selecting previously unselected package libjpeg-dev:amd64. 653s Preparing to unpack .../074-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 653s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 653s Selecting previously unselected package libjs-bootstrap. 653s Preparing to unpack .../075-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 653s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 653s Selecting previously unselected package libjs-popper.js. 653s Preparing to unpack .../076-libjs-popper.js_1.16.1+ds-6_all.deb ... 653s Unpacking libjs-popper.js (1.16.1+ds-6) ... 653s Selecting previously unselected package libjs-bootstrap4. 653s Preparing to unpack .../077-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 653s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 654s Selecting previously unselected package libjs-d3. 654s Preparing to unpack .../078-libjs-d3_3.5.17-4_all.deb ... 654s Unpacking libjs-d3 (3.5.17-4) ... 654s Selecting previously unselected package libjs-es5-shim. 654s Preparing to unpack .../079-libjs-es5-shim_4.6.7-2_all.deb ... 654s Unpacking libjs-es5-shim (4.6.7-2) ... 654s Selecting previously unselected package libjs-highlight.js. 654s Preparing to unpack .../080-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 654s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 654s Selecting previously unselected package libjs-jquery. 654s Preparing to unpack .../081-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 654s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 654s Selecting previously unselected package libjs-jquery-datatables. 654s Preparing to unpack .../082-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 654s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 654s Selecting previously unselected package libjs-sifter.js. 654s Preparing to unpack .../083-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 654s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 654s Selecting previously unselected package libjs-microplugin.js. 654s Preparing to unpack .../084-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 654s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 654s Selecting previously unselected package libjs-jquery-selectize.js. 654s Preparing to unpack .../085-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 654s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 654s Selecting previously unselected package libjs-jquery-ui. 654s Preparing to unpack .../086-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 654s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 654s Selecting previously unselected package libjs-json. 654s Preparing to unpack .../087-libjs-json_0~20221030+~1.0.8-1_all.deb ... 654s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 654s Selecting previously unselected package libjs-lunr. 654s Preparing to unpack .../088-libjs-lunr_2.3.9~dfsg-2_all.deb ... 654s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 654s Selecting previously unselected package libjs-prettify. 654s Preparing to unpack .../089-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 654s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 654s Selecting previously unselected package libkpathsea6:amd64. 654s Preparing to unpack .../090-libkpathsea6_2023.20230311.66589-9_amd64.deb ... 654s Unpacking libkpathsea6:amd64 (2023.20230311.66589-9) ... 654s Selecting previously unselected package liblapack3:amd64. 654s Preparing to unpack .../091-liblapack3_3.12.0-3_amd64.deb ... 654s Unpacking liblapack3:amd64 (3.12.0-3) ... 654s Selecting previously unselected package liblapack-dev:amd64. 654s Preparing to unpack .../092-liblapack-dev_3.12.0-3_amd64.deb ... 654s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 654s Selecting previously unselected package liblerc4:amd64. 654s Preparing to unpack .../093-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 654s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 654s Selecting previously unselected package liblua5.4-0:amd64. 654s Preparing to unpack .../094-liblua5.4-0_5.4.6-3_amd64.deb ... 654s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 654s Selecting previously unselected package libncurses-dev:amd64. 654s Preparing to unpack .../095-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 654s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 654s Selecting previously unselected package libthai-data. 654s Preparing to unpack .../096-libthai-data_0.1.29-2_all.deb ... 654s Unpacking libthai-data (0.1.29-2) ... 654s Selecting previously unselected package libthai0:amd64. 654s Preparing to unpack .../097-libthai0_0.1.29-2_amd64.deb ... 654s Unpacking libthai0:amd64 (0.1.29-2) ... 654s Selecting previously unselected package libpango-1.0-0:amd64. 654s Preparing to unpack .../098-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 654s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 655s Selecting previously unselected package libpangoft2-1.0-0:amd64. 655s Preparing to unpack .../099-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 655s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 655s Selecting previously unselected package libpangocairo-1.0-0:amd64. 655s Preparing to unpack .../100-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 655s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 655s Selecting previously unselected package libpaper1:amd64. 655s Preparing to unpack .../101-libpaper1_1.1.29_amd64.deb ... 655s Unpacking libpaper1:amd64 (1.1.29) ... 655s Selecting previously unselected package libpaper-utils. 655s Preparing to unpack .../102-libpaper-utils_1.1.29_amd64.deb ... 655s Unpacking libpaper-utils (1.1.29) ... 655s Selecting previously unselected package libpcre2-16-0:amd64. 655s Preparing to unpack .../103-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 655s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 655s Selecting previously unselected package libpcre2-32-0:amd64. 655s Preparing to unpack .../104-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 655s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 655s Selecting previously unselected package libpcre2-posix3:amd64. 655s Preparing to unpack .../105-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 655s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 655s Selecting previously unselected package libpcre2-dev:amd64. 655s Preparing to unpack .../106-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 655s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 655s Selecting previously unselected package libpkgconf3:amd64. 655s Preparing to unpack .../107-libpkgconf3_1.8.1-2_amd64.deb ... 655s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 655s Selecting previously unselected package zlib1g-dev:amd64. 655s Preparing to unpack .../108-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 655s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 655s Selecting previously unselected package libpng-dev:amd64. 655s Preparing to unpack .../109-libpng-dev_1.6.43-1_amd64.deb ... 655s Unpacking libpng-dev:amd64 (1.6.43-1) ... 655s Selecting previously unselected package libpotrace0:amd64. 655s Preparing to unpack .../110-libpotrace0_1.16-2_amd64.deb ... 655s Unpacking libpotrace0:amd64 (1.16-2) ... 655s Selecting previously unselected package libptexenc1:amd64. 655s Preparing to unpack .../111-libptexenc1_2023.20230311.66589-9_amd64.deb ... 655s Unpacking libptexenc1:amd64 (2023.20230311.66589-9) ... 655s Selecting previously unselected package libreadline-dev:amd64. 655s Preparing to unpack .../112-libreadline-dev_8.2-3_amd64.deb ... 655s Unpacking libreadline-dev:amd64 (8.2-3) ... 655s Selecting previously unselected package libsharpyuv0:amd64. 655s Preparing to unpack .../113-libsharpyuv0_1.3.2-0.4_amd64.deb ... 655s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 655s Selecting previously unselected package libsm6:amd64. 655s Preparing to unpack .../114-libsm6_2%3a1.2.3-1build2_amd64.deb ... 655s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 655s Selecting previously unselected package libsynctex2:amd64. 655s Preparing to unpack .../115-libsynctex2_2023.20230311.66589-9_amd64.deb ... 655s Unpacking libsynctex2:amd64 (2023.20230311.66589-9) ... 655s Selecting previously unselected package libtcl8.6:amd64. 655s Preparing to unpack .../116-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 655s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 655s Selecting previously unselected package libteckit0:amd64. 655s Preparing to unpack .../117-libteckit0_2.5.12+ds1-1_amd64.deb ... 655s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 655s Selecting previously unselected package libtexlua53-5:amd64. 655s Preparing to unpack .../118-libtexlua53-5_2023.20230311.66589-9_amd64.deb ... 655s Unpacking libtexlua53-5:amd64 (2023.20230311.66589-9) ... 655s Selecting previously unselected package libjbig0:amd64. 655s Preparing to unpack .../119-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 655s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 655s Selecting previously unselected package libwebp7:amd64. 655s Preparing to unpack .../120-libwebp7_1.3.2-0.4_amd64.deb ... 655s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 655s Selecting previously unselected package libtiff6:amd64. 655s Preparing to unpack .../121-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 655s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 655s Selecting previously unselected package libxft2:amd64. 655s Preparing to unpack .../122-libxft2_2.3.6-1_amd64.deb ... 655s Unpacking libxft2:amd64 (2.3.6-1) ... 655s Selecting previously unselected package libxss1:amd64. 655s Preparing to unpack .../123-libxss1_1%3a1.2.3-1build2_amd64.deb ... 655s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 655s Selecting previously unselected package libtk8.6:amd64. 655s Preparing to unpack .../124-libtk8.6_8.6.13-2_amd64.deb ... 655s Unpacking libtk8.6:amd64 (8.6.13-2) ... 655s Selecting previously unselected package libxt6:amd64. 655s Preparing to unpack .../125-libxt6_1%3a1.2.1-1.1_amd64.deb ... 655s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 655s Selecting previously unselected package libxmu6:amd64. 655s Preparing to unpack .../126-libxmu6_2%3a1.1.3-3_amd64.deb ... 655s Unpacking libxmu6:amd64 (2:1.1.3-3) ... 655s Selecting previously unselected package libxpm4:amd64. 655s Preparing to unpack .../127-libxpm4_1%3a3.5.17-1_amd64.deb ... 655s Unpacking libxpm4:amd64 (1:3.5.17-1) ... 655s Selecting previously unselected package libxaw7:amd64. 655s Preparing to unpack .../128-libxaw7_2%3a1.0.14-1_amd64.deb ... 655s Unpacking libxaw7:amd64 (2:1.0.14-1) ... 655s Selecting previously unselected package libxi6:amd64. 655s Preparing to unpack .../129-libxi6_2%3a1.8.1-1_amd64.deb ... 655s Unpacking libxi6:amd64 (2:1.8.1-1) ... 655s Selecting previously unselected package libzzip-0-13:amd64. 655s Preparing to unpack .../130-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... 655s Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 655s Selecting previously unselected package zip. 655s Preparing to unpack .../131-zip_3.0-13_amd64.deb ... 655s Unpacking zip (3.0-13) ... 655s Selecting previously unselected package unzip. 655s Preparing to unpack .../132-unzip_6.0-28ubuntu3_amd64.deb ... 655s Unpacking unzip (6.0-28ubuntu3) ... 655s Selecting previously unselected package xdg-utils. 656s Preparing to unpack .../133-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 656s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 656s Selecting previously unselected package r-base-core. 656s Preparing to unpack .../134-r-base-core_4.3.2-1build1_amd64.deb ... 656s Unpacking r-base-core (4.3.2-1build1) ... 656s Selecting previously unselected package r-cran-littler. 656s Preparing to unpack .../135-r-cran-littler_0.3.19-1_amd64.deb ... 656s Unpacking r-cran-littler (0.3.19-1) ... 656s Selecting previously unselected package littler. 656s Preparing to unpack .../136-littler_0.3.19-1_all.deb ... 656s Unpacking littler (0.3.19-1) ... 656s Selecting previously unselected package node-bootstrap-sass. 656s Preparing to unpack .../137-node-bootstrap-sass_3.4.3-2_all.deb ... 656s Unpacking node-bootstrap-sass (3.4.3-2) ... 656s Selecting previously unselected package node-html5shiv. 656s Preparing to unpack .../138-node-html5shiv_3.7.3+dfsg-5_all.deb ... 656s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 656s Selecting previously unselected package node-normalize.css. 656s Preparing to unpack .../139-node-normalize.css_8.0.1-5_all.deb ... 656s Unpacking node-normalize.css (8.0.1-5) ... 656s Selecting previously unselected package pandoc-data. 656s Preparing to unpack .../140-pandoc-data_3.1.3-1_all.deb ... 656s Unpacking pandoc-data (3.1.3-1) ... 656s Selecting previously unselected package pandoc. 656s Preparing to unpack .../141-pandoc_3.1.3+ds-2_amd64.deb ... 656s Unpacking pandoc (3.1.3+ds-2) ... 657s Selecting previously unselected package pkgconf-bin. 657s Preparing to unpack .../142-pkgconf-bin_1.8.1-2_amd64.deb ... 657s Unpacking pkgconf-bin (1.8.1-2) ... 657s Selecting previously unselected package pkgconf:amd64. 657s Preparing to unpack .../143-pkgconf_1.8.1-2_amd64.deb ... 657s Unpacking pkgconf:amd64 (1.8.1-2) ... 657s Selecting previously unselected package pkg-config:amd64. 657s Preparing to unpack .../144-pkg-config_1.8.1-2_amd64.deb ... 657s Unpacking pkg-config:amd64 (1.8.1-2) ... 657s Selecting previously unselected package liblzma-dev:amd64. 657s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_amd64.deb ... 657s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 657s Selecting previously unselected package r-base-dev. 657s Preparing to unpack .../146-r-base-dev_4.3.2-1build1_all.deb ... 657s Unpacking r-base-dev (4.3.2-1build1) ... 657s Selecting previously unselected package pkg-r-autopkgtest. 657s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 657s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 657s Selecting previously unselected package r-bioc-biocgenerics. 657s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 657s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 657s Selecting previously unselected package r-bioc-biobase. 657s Preparing to unpack .../149-r-bioc-biobase_2.62.0-1_amd64.deb ... 657s Unpacking r-bioc-biobase (2.62.0-1) ... 657s Selecting previously unselected package r-bioc-s4vectors. 657s Preparing to unpack .../150-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 657s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 657s Selecting previously unselected package r-bioc-iranges. 657s Preparing to unpack .../151-r-bioc-iranges_2.36.0-1_amd64.deb ... 657s Unpacking r-bioc-iranges (2.36.0-1) ... 657s Selecting previously unselected package r-cran-dbi. 657s Preparing to unpack .../152-r-cran-dbi_1.2.2-1_all.deb ... 657s Unpacking r-cran-dbi (1.2.2-1) ... 657s Selecting previously unselected package r-cran-bit. 657s Preparing to unpack .../153-r-cran-bit_4.0.5-1_amd64.deb ... 657s Unpacking r-cran-bit (4.0.5-1) ... 657s Selecting previously unselected package r-cran-bit64. 657s Preparing to unpack .../154-r-cran-bit64_4.0.5-1_amd64.deb ... 657s Unpacking r-cran-bit64 (4.0.5-1) ... 657s Selecting previously unselected package r-cran-rlang. 657s Preparing to unpack .../155-r-cran-rlang_1.1.3-1_amd64.deb ... 657s Unpacking r-cran-rlang (1.1.3-1) ... 657s Selecting previously unselected package r-cran-cli. 657s Preparing to unpack .../156-r-cran-cli_3.6.2-1_amd64.deb ... 657s Unpacking r-cran-cli (3.6.2-1) ... 657s Selecting previously unselected package r-cran-glue. 657s Preparing to unpack .../157-r-cran-glue_1.7.0-1_amd64.deb ... 657s Unpacking r-cran-glue (1.7.0-1) ... 657s Selecting previously unselected package r-cran-lifecycle. 657s Preparing to unpack .../158-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 657s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 657s Selecting previously unselected package r-cran-vctrs. 657s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_amd64.deb ... 657s Unpacking r-cran-vctrs (0.6.5-1) ... 657s Selecting previously unselected package r-cran-blob. 657s Preparing to unpack .../160-r-cran-blob_1.2.4-1_all.deb ... 657s Unpacking r-cran-blob (1.2.4-1) ... 657s Selecting previously unselected package r-cran-fastmap. 657s Preparing to unpack .../161-r-cran-fastmap_1.1.1-1_amd64.deb ... 657s Unpacking r-cran-fastmap (1.1.1-1) ... 657s Selecting previously unselected package r-cran-cachem. 657s Preparing to unpack .../162-r-cran-cachem_1.0.8-1_amd64.deb ... 657s Unpacking r-cran-cachem (1.0.8-1) ... 658s Selecting previously unselected package r-cran-memoise. 658s Preparing to unpack .../163-r-cran-memoise_2.0.1-1_all.deb ... 658s Unpacking r-cran-memoise (2.0.1-1) ... 658s Selecting previously unselected package r-cran-pkgconfig. 658s Preparing to unpack .../164-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 658s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 658s Selecting previously unselected package r-cran-plogr. 658s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build1_all.deb ... 658s Unpacking r-cran-plogr (0.2.0-3build1) ... 658s Selecting previously unselected package r-cran-cpp11. 658s Preparing to unpack .../166-r-cran-cpp11_0.4.7-1_all.deb ... 658s Unpacking r-cran-cpp11 (0.4.7-1) ... 658s Selecting previously unselected package r-cran-rsqlite. 658s Preparing to unpack .../167-r-cran-rsqlite_2.3.4-1_amd64.deb ... 658s Unpacking r-cran-rsqlite (2.3.4-1) ... 658s Selecting previously unselected package r-cran-curl. 658s Preparing to unpack .../168-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 658s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 658s Selecting previously unselected package r-cran-jsonlite. 658s Preparing to unpack .../169-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 658s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 658s Selecting previously unselected package r-cran-mime. 658s Preparing to unpack .../170-r-cran-mime_0.12-1_amd64.deb ... 658s Unpacking r-cran-mime (0.12-1) ... 658s Selecting previously unselected package r-cran-sys. 658s Preparing to unpack .../171-r-cran-sys_3.4.2-1_amd64.deb ... 658s Unpacking r-cran-sys (3.4.2-1) ... 658s Selecting previously unselected package r-cran-askpass. 658s Preparing to unpack .../172-r-cran-askpass_1.2.0-1_amd64.deb ... 658s Unpacking r-cran-askpass (1.2.0-1) ... 658s Selecting previously unselected package r-cran-openssl. 658s Preparing to unpack .../173-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 658s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 658s Selecting previously unselected package r-cran-r6. 658s Preparing to unpack .../174-r-cran-r6_2.5.1-1_all.deb ... 658s Unpacking r-cran-r6 (2.5.1-1) ... 658s Selecting previously unselected package r-cran-httr. 658s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ... 658s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 658s Selecting previously unselected package r-cran-png. 658s Preparing to unpack .../176-r-cran-png_0.1-8-1_amd64.deb ... 658s Unpacking r-cran-png (0.1-8-1) ... 658s Selecting previously unselected package r-bioc-zlibbioc. 658s Preparing to unpack .../177-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 658s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 658s Selecting previously unselected package r-bioc-xvector. 658s Preparing to unpack .../178-r-bioc-xvector_0.42.0-1_amd64.deb ... 658s Unpacking r-bioc-xvector (0.42.0-1) ... 658s Selecting previously unselected package r-cran-bitops. 658s Preparing to unpack .../179-r-cran-bitops_1.0-7-1_amd64.deb ... 658s Unpacking r-cran-bitops (1.0-7-1) ... 658s Selecting previously unselected package r-cran-rcurl. 658s Preparing to unpack .../180-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 658s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 658s Selecting previously unselected package r-bioc-genomeinfodbdata. 658s Preparing to unpack .../181-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 658s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 658s Selecting previously unselected package r-bioc-genomeinfodb. 658s Preparing to unpack .../182-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 658s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 658s Selecting previously unselected package r-cran-crayon. 658s Preparing to unpack .../183-r-cran-crayon_1.5.2-1_all.deb ... 658s Unpacking r-cran-crayon (1.5.2-1) ... 658s Selecting previously unselected package r-bioc-biostrings. 658s Preparing to unpack .../184-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 658s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 658s Selecting previously unselected package r-bioc-keggrest. 658s Preparing to unpack .../185-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 658s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 658s Selecting previously unselected package r-bioc-annotationdbi. 658s Preparing to unpack .../186-r-bioc-annotationdbi_1.64.1-1_all.deb ... 658s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 658s Selecting previously unselected package r-cran-xml. 658s Preparing to unpack .../187-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 658s Unpacking r-cran-xml (3.99-0.16.1-1) ... 659s Selecting previously unselected package r-cran-xtable. 659s Preparing to unpack .../188-r-cran-xtable_1%3a1.8-4-2_all.deb ... 659s Unpacking r-cran-xtable (1:1.8-4-2) ... 659s Selecting previously unselected package r-bioc-annotate. 659s Preparing to unpack .../189-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 659s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 659s Selecting previously unselected package r-cran-base64enc. 659s Preparing to unpack .../190-r-cran-base64enc_0.1-3-3_amd64.deb ... 659s Unpacking r-cran-base64enc (0.1-3-3) ... 659s Selecting previously unselected package r-cran-digest. 659s Preparing to unpack .../191-r-cran-digest_0.6.34-1_amd64.deb ... 659s Unpacking r-cran-digest (0.6.34-1) ... 659s Selecting previously unselected package r-cran-ellipsis. 659s Preparing to unpack .../192-r-cran-ellipsis_0.3.2-2_amd64.deb ... 659s Unpacking r-cran-ellipsis (0.3.2-2) ... 659s Selecting previously unselected package r-cran-htmltools. 659s Preparing to unpack .../193-r-cran-htmltools_0.5.7-1_amd64.deb ... 659s Unpacking r-cran-htmltools (0.5.7-1) ... 659s Selecting previously unselected package r-cran-evaluate. 659s Preparing to unpack .../194-r-cran-evaluate_0.23-1_all.deb ... 659s Unpacking r-cran-evaluate (0.23-1) ... 659s Selecting previously unselected package r-cran-xfun. 659s Preparing to unpack .../195-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 659s Unpacking r-cran-xfun (0.41+dfsg-1) ... 659s Selecting previously unselected package r-cran-highr. 659s Preparing to unpack .../196-r-cran-highr_0.10+dfsg-1_all.deb ... 659s Unpacking r-cran-highr (0.10+dfsg-1) ... 659s Selecting previously unselected package r-cran-yaml. 659s Preparing to unpack .../197-r-cran-yaml_2.3.8-1_amd64.deb ... 659s Unpacking r-cran-yaml (2.3.8-1) ... 659s Selecting previously unselected package libjs-mathjax. 659s Preparing to unpack .../198-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 659s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 660s Selecting previously unselected package r-cran-knitr. 660s Preparing to unpack .../199-r-cran-knitr_1.45+dfsg-1_all.deb ... 660s Unpacking r-cran-knitr (1.45+dfsg-1) ... 660s Selecting previously unselected package r-cran-jquerylib. 660s Preparing to unpack .../200-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 660s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 660s Selecting previously unselected package r-cran-fs. 660s Preparing to unpack .../201-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 660s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 660s Selecting previously unselected package r-cran-rappdirs. 660s Preparing to unpack .../202-r-cran-rappdirs_0.3.3-1_amd64.deb ... 660s Unpacking r-cran-rappdirs (0.3.3-1) ... 660s Selecting previously unselected package r-cran-sass. 660s Preparing to unpack .../203-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 660s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 660s Selecting previously unselected package r-cran-bslib. 660s Preparing to unpack .../204-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 660s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 660s Selecting previously unselected package r-cran-fontawesome. 660s Preparing to unpack .../205-r-cran-fontawesome_0.5.2-1_all.deb ... 660s Unpacking r-cran-fontawesome (0.5.2-1) ... 660s Selecting previously unselected package r-cran-magrittr. 660s Preparing to unpack .../206-r-cran-magrittr_2.0.3-1_amd64.deb ... 660s Unpacking r-cran-magrittr (2.0.3-1) ... 660s Selecting previously unselected package r-cran-stringi. 660s Preparing to unpack .../207-r-cran-stringi_1.8.3-1_amd64.deb ... 660s Unpacking r-cran-stringi (1.8.3-1) ... 660s Selecting previously unselected package r-cran-stringr. 660s Preparing to unpack .../208-r-cran-stringr_1.5.1-1_all.deb ... 660s Unpacking r-cran-stringr (1.5.1-1) ... 660s Selecting previously unselected package r-cran-tinytex. 660s Preparing to unpack .../209-r-cran-tinytex_0.49-1_all.deb ... 660s Unpacking r-cran-tinytex (0.49-1) ... 660s Selecting previously unselected package libjs-modernizr. 660s Preparing to unpack .../210-libjs-modernizr_2.6.2+ds1-5_all.deb ... 660s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 660s Selecting previously unselected package r-cran-pkgkitten. 660s Preparing to unpack .../211-r-cran-pkgkitten_0.2.3-1_all.deb ... 660s Unpacking r-cran-pkgkitten (0.2.3-1) ... 660s Selecting previously unselected package r-cran-rcpp. 660s Preparing to unpack .../212-r-cran-rcpp_1.0.12-1_amd64.deb ... 660s Unpacking r-cran-rcpp (1.0.12-1) ... 660s Selecting previously unselected package r-cran-later. 660s Preparing to unpack .../213-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 660s Unpacking r-cran-later (1.3.2+dfsg-1) ... 661s Selecting previously unselected package r-cran-promises. 661s Preparing to unpack .../214-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 661s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 661s Selecting previously unselected package r-cran-httpuv. 661s Preparing to unpack .../215-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 661s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 661s Selecting previously unselected package r-cran-sourcetools. 661s Preparing to unpack .../216-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 661s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 661s Selecting previously unselected package r-cran-withr. 661s Preparing to unpack .../217-r-cran-withr_2.5.0-1_all.deb ... 661s Unpacking r-cran-withr (2.5.0-1) ... 661s Selecting previously unselected package r-cran-commonmark. 661s Preparing to unpack .../218-r-cran-commonmark_1.9.1-1_amd64.deb ... 661s Unpacking r-cran-commonmark (1.9.1-1) ... 661s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 661s Preparing to unpack .../219-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 661s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 661s Selecting previously unselected package r-cran-shiny. 661s Preparing to unpack .../220-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 661s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 661s Selecting previously unselected package r-cran-rmarkdown. 661s Preparing to unpack .../221-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 661s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 661s Selecting previously unselected package r-cran-bookdown. 661s Preparing to unpack .../222-r-cran-bookdown_0.37+dfsg-1_all.deb ... 661s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 661s Selecting previously unselected package r-cran-biocmanager. 661s Preparing to unpack .../223-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 661s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 661s Selecting previously unselected package tex-common. 661s Preparing to unpack .../224-tex-common_6.18_all.deb ... 661s Unpacking tex-common (6.18) ... 661s Selecting previously unselected package t1utils. 661s Preparing to unpack .../225-t1utils_1.41-4build2_amd64.deb ... 661s Unpacking t1utils (1.41-4build2) ... 661s Selecting previously unselected package texlive-binaries. 661s Preparing to unpack .../226-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 661s Unpacking texlive-binaries (2023.20230311.66589-9) ... 661s Selecting previously unselected package texlive-base. 661s Preparing to unpack .../227-texlive-base_2023.20240207-1_all.deb ... 661s Unpacking texlive-base (2023.20240207-1) ... 663s Selecting previously unselected package texlive-latex-base. 663s Preparing to unpack .../228-texlive-latex-base_2023.20240207-1_all.deb ... 663s Unpacking texlive-latex-base (2023.20240207-1) ... 663s Selecting previously unselected package texlive-bibtex-extra. 663s Preparing to unpack .../229-texlive-bibtex-extra_2023.20240207-1_all.deb ... 663s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 666s Selecting previously unselected package r-bioc-biocstyle. 666s Preparing to unpack .../230-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 666s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 666s Selecting previously unselected package r-cran-lattice. 666s Preparing to unpack .../231-r-cran-lattice_0.22-5-1_amd64.deb ... 666s Unpacking r-cran-lattice (0.22-5-1) ... 666s Selecting previously unselected package r-cran-rcolorbrewer. 666s Preparing to unpack .../232-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 666s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 666s Selecting previously unselected package r-bioc-geneplotter. 666s Preparing to unpack .../233-r-bioc-geneplotter_1.80.0+dfsg-1_all.deb ... 666s Unpacking r-bioc-geneplotter (1.80.0+dfsg-1) ... 667s Setting up libjs-json (0~20221030+~1.0.8-1) ... 667s Setting up javascript-common (11+nmu1) ... 667s Setting up libgraphite2-3:amd64 (1.3.14-2) ... 667s Setting up libpixman-1-0:amd64 (0.42.2-1) ... 667s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ... 667s Setting up libpaper1:amd64 (1.1.29) ... 667s 667s Creating config file /etc/papersize with new version 667s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 667s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 667s Setting up libxpm4:amd64 (1:3.5.17-1) ... 667s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 667s Setting up libxi6:amd64 (2:1.8.1-1) ... 667s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 667s Setting up libdatrie1:amd64 (0.2.13-3) ... 667s Setting up libjs-popper.js (1.16.1+ds-6) ... 667s Setting up libxcb-render0:amd64 (1.15-1) ... 667s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 667s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 667s Setting up libjs-lunr (2.3.9~dfsg-2) ... 667s Setting up unzip (6.0-28ubuntu3) ... 667s Setting up liblatex-tounicode-perl (0.54-2) ... 667s Setting up x11-common (1:7.7+23ubuntu2) ... 667s Setting up node-html5shiv (3.7.3+dfsg-5) ... 667s Setting up libdeflate0:amd64 (1.19-1) ... 667s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 667s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 667s Setting up libxcb-shm0:amd64 (1.15-1) ... 667s Setting up libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 667s Setting up libpaper-utils (1.1.29) ... 667s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ... 667s Setting up libjs-modernizr (2.6.2+ds1-5) ... 667s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ... 667s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 667s Setting up libjs-es5-shim (4.6.7-2) ... 667s Setting up tex-common (6.18) ... 667s update-language: texlive-base not installed and configured, doing nothing! 667s Setting up libio-string-perl (1.08-4) ... 667s Setting up zip (3.0-13) ... 667s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 667s Setting up libblas3:amd64 (3.12.0-3) ... 667s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 667s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 667s Setting up libpkgconf3:amd64 (1.8.1-2) ... 667s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 667s Setting up libteckit0:amd64 (2.5.12+ds1-1) ... 667s Setting up t1utils (1.41-4build2) ... 667s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ... 667s Setting up libtexlua53-5:amd64 (2023.20230311.66589-9) ... 667s Setting up libjs-d3 (3.5.17-4) ... 667s Setting up fonts-dejavu-mono (2.37-8) ... 667s Setting up libmpc3:amd64 (1.3.1-1) ... 667s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ... 667s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... 667s Setting up icu-devtools (74.2-1ubuntu1) ... 667s Setting up fonts-dejavu-core (2.37-8) ... 667s Setting up pkgconf-bin (1.8.1-2) ... 667s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 667s Setting up libkpathsea6:amd64 (2023.20230311.66589-9) ... 667s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 667s Setting up libwebp7:amd64 (1.3.2-0.4) ... 667s Setting up liblzma-dev:amd64 (5.4.5-0.3) ... 667s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ... 667s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 667s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 667s Setting up libnsl-dev:amd64 (1.3.0-3) ... 667s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 667s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 667s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 667s Setting up fonts-lmodern (2.005-1) ... 667s Setting up liblua5.4-0:amd64 (5.4.6-3) ... 667s Setting up libharfbuzz0b:amd64 (8.3.0-2) ... 667s Setting up libthai-data (0.1.29-2) ... 667s Setting up node-bootstrap-sass (3.4.3-2) ... 667s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 667s Setting up libxss1:amd64 (1:1.2.3-1build2) ... 667s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 667s Setting up pandoc-data (3.1.3-1) ... 667s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ... 667s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 667s Setting up libisl23:amd64 (0.26-3) ... 667s Setting up libc-dev-bin (2.39-0ubuntu2) ... 667s Setting up node-normalize.css (8.0.1-5) ... 667s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 667s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 667s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 668s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 668s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 668s Setting up libblas-dev:amd64 (3.12.0-3) ... 668s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 668s Setting up dctrl-tools (2.24-3build2) ... 668s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 668s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 668s Setting up libsynctex2:amd64 (2023.20230311.66589-9) ... 668s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 668s Setting up libpotrace0:amd64 (1.16-2) ... 668s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 668s Setting up libice6:amd64 (2:1.0.10-1build2) ... 668s Setting up liblapack3:amd64 (3.12.0-3) ... 668s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 668s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 668s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 668s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 668s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 668s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 668s Setting up pkgconf:amd64 (1.8.1-2) ... 668s Setting up libthai0:amd64 (0.1.29-2) ... 668s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 668s Setting up libptexenc1:amd64 (2023.20230311.66589-9) ... 668s Setting up pandoc (3.1.3+ds-2) ... 668s Setting up liblapack-dev:amd64 (3.12.0-3) ... 668s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 668s Setting up pkg-config:amd64 (1.8.1-2) ... 668s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 668s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 668s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ... 668s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 668s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 668s Setting up libsm6:amd64 (2:1.2.3-1build2) ... 668s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ... 668s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 668s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 668s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 668s Setting up fontconfig (2.15.0-1ubuntu1) ... 670s Regenerating fonts cache... done. 670s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 670s Setting up libxft2:amd64 (2.3.6-1) ... 670s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 670s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ... 670s Setting up cpp-13 (13.2.0-17ubuntu2) ... 670s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 670s Setting up libtk8.6:amd64 (8.6.13-2) ... 670s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... 670s Setting up libreadline-dev:amd64 (8.2-3) ... 670s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 670s Setting up libcairo2:amd64 (1.18.0-1) ... 670s Setting up gcc-13 (13.2.0-17ubuntu2) ... 670s Setting up libxt6:amd64 (1:1.2.1-1.1) ... 670s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 670s Setting up cpp (4:13.2.0-7ubuntu1) ... 670s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 670s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 670s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 670s Setting up libxmu6:amd64 (2:1.1.3-3) ... 670s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 670s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 670s Setting up libpng-dev:amd64 (1.6.43-1) ... 670s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 670s Setting up libxaw7:amd64 (2:1.0.14-1) ... 670s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 670s Setting up gcc (4:13.2.0-7ubuntu1) ... 670s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 670s Setting up r-base-core (4.3.2-1build1) ... 670s 670s Creating config file /etc/R/Renviron with new version 670s Setting up r-cran-crayon (1.5.2-1) ... 670s Setting up r-cran-sourcetools (0.1.7-1-1) ... 670s Setting up r-cran-lattice (0.22-5-1) ... 670s Setting up r-cran-xml (3.99-0.16.1-1) ... 670s Setting up texlive-binaries (2023.20230311.66589-9) ... 670s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 670s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 670s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 670s Setting up r-cran-commonmark (1.9.1-1) ... 670s Setting up r-cran-r6 (2.5.1-1) ... 670s Setting up r-cran-pkgkitten (0.2.3-1) ... 670s Setting up texlive-base (2023.20240207-1) ... 671s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 671s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 671s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 671s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 672s Setting up r-cran-magrittr (2.0.3-1) ... 672s Setting up r-cran-rappdirs (0.3.3-1) ... 672s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 672s Setting up r-cran-littler (0.3.19-1) ... 672s Setting up r-cran-fs (1.6.3+dfsg-1) ... 672s Setting up r-cran-rcpp (1.0.12-1) ... 672s Setting up r-cran-curl (5.2.0+dfsg-1) ... 672s Setting up g++-13 (13.2.0-17ubuntu2) ... 672s Setting up r-bioc-biocgenerics (0.48.1-2) ... 672s Setting up r-cran-rlang (1.1.3-1) ... 672s Setting up littler (0.3.19-1) ... 672s Setting up r-cran-xfun (0.41+dfsg-1) ... 672s Setting up r-cran-sys (3.4.2-1) ... 672s Setting up r-cran-plogr (0.2.0-3build1) ... 672s Setting up r-cran-withr (2.5.0-1) ... 672s Setting up r-cran-mime (0.12-1) ... 672s Setting up r-cran-base64enc (0.1-3-3) ... 672s Setting up r-cran-digest (0.6.34-1) ... 672s Setting up r-cran-yaml (2.3.8-1) ... 672s Setting up r-cran-evaluate (0.23-1) ... 672s Setting up r-cran-dbi (1.2.2-1) ... 672s Setting up r-cran-highr (0.10+dfsg-1) ... 672s Setting up r-cran-glue (1.7.0-1) ... 672s Setting up r-cran-bit (4.0.5-1) ... 672s Setting up r-cran-xtable (1:1.8-4-2) ... 672s Setting up r-cran-cli (3.6.2-1) ... 672s Setting up gfortran (4:13.2.0-7ubuntu1) ... 672s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 672s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 672s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 672s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 672s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 672s Setting up r-cran-bitops (1.0-7-1) ... 672s Setting up r-cran-bit64 (4.0.5-1) ... 672s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 672s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 672s Setting up r-cran-askpass (1.2.0-1) ... 672s Setting up r-cran-fastmap (1.1.1-1) ... 672s Setting up r-cran-png (0.1-8-1) ... 672s Setting up r-bioc-biobase (2.62.0-1) ... 672s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 672s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 672s Setting up r-cran-stringi (1.8.3-1) ... 672s Setting up texlive-latex-base (2023.20240207-1) ... 672s Setting up r-cran-cpp11 (0.4.7-1) ... 672s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 672s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 672s Setting up r-cran-later (1.3.2+dfsg-1) ... 672s Setting up r-cran-tinytex (0.49-1) ... 672s Setting up r-cran-knitr (1.45+dfsg-1) ... 672s Setting up g++ (4:13.2.0-7ubuntu1) ... 672s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 672s Setting up r-cran-cachem (1.0.8-1) ... 672s Setting up build-essential (12.10ubuntu1) ... 672s Setting up r-bioc-iranges (2.36.0-1) ... 672s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 672s Setting up r-cran-vctrs (0.6.5-1) ... 672s Setting up r-cran-ellipsis (0.3.2-2) ... 672s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 672s Setting up r-base-dev (4.3.2-1build1) ... 672s Setting up r-cran-stringr (1.5.1-1) ... 672s Setting up texlive-bibtex-extra (2023.20240207-1) ... 672s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 672s Setting up r-cran-httr (1.4.7+dfsg-1) ... 672s Setting up r-cran-memoise (2.0.1-1) ... 672s Setting up r-cran-promises (1.2.1+dfsg-1) ... 672s Setting up r-cran-blob (1.2.4-1) ... 672s Setting up r-cran-htmltools (0.5.7-1) ... 672s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 672s Setting up r-bioc-xvector (0.42.0-1) ... 672s Setting up r-cran-sass (0.4.8+dfsg-1) ... 672s Setting up r-cran-rsqlite (2.3.4-1) ... 672s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 672s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 672s Setting up r-cran-fontawesome (0.5.2-1) ... 672s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 672s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 672s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 672s Setting up r-bioc-annotationdbi (1.64.1-1) ... 672s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 672s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 672s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 672s Setting up r-bioc-geneplotter (1.80.0+dfsg-1) ... 672s Setting up r-cran-bookdown (0.37+dfsg-1) ... 672s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 672s Processing triggers for libc-bin (2.39-0ubuntu2) ... 672s Processing triggers for man-db (2.12.0-3) ... 673s Processing triggers for install-info (7.1-3) ... 673s Processing triggers for tex-common (6.18) ... 674s Running updmap-sys. This may take some time... done. 674s Running mktexlsr /var/lib/texmf ... done. 674s Building format(s) --all. 704s This may take some time... done. 712s Reading package lists... 712s Building dependency tree... 712s Reading state information... 712s Starting pkgProblemResolver with broken count: 0 712s Starting 2 pkgProblemResolver with broken count: 0 712s Done 712s The following NEW packages will be installed: 712s autopkgtest-satdep 712s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 712s Need to get 0 B/696 B of archives. 712s After this operation, 0 B of additional disk space will be used. 712s Get:1 /tmp/autopkgtest.6IojMJ/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 713s Selecting previously unselected package autopkgtest-satdep. 713s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 100460 files and directories currently installed.) 713s Preparing to unpack .../2-autopkgtest-satdep.deb ... 713s Unpacking autopkgtest-satdep (0) ... 713s Setting up autopkgtest-satdep (0) ... 714s (Reading database ... 100460 files and directories currently installed.) 714s Removing autopkgtest-satdep (0) ... 715s autopkgtest [02:48:36]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 715s autopkgtest [02:48:36]: test pkg-r-autopkgtest: [----------------------- 715s Test: Try to load the R library geneplotter 715s 715s R version 4.3.2 (2023-10-31) -- "Eye Holes" 715s Copyright (C) 2023 The R Foundation for Statistical Computing 715s Platform: x86_64-pc-linux-gnu (64-bit) 715s 715s R is free software and comes with ABSOLUTELY NO WARRANTY. 715s You are welcome to redistribute it under certain conditions. 715s Type 'license()' or 'licence()' for distribution details. 715s 715s R is a collaborative project with many contributors. 715s Type 'contributors()' for more information and 715s 'citation()' on how to cite R or R packages in publications. 715s 715s Type 'demo()' for some demos, 'help()' for on-line help, or 715s 'help.start()' for an HTML browser interface to help. 715s Type 'q()' to quit R. 715s 715s > library('geneplotter') 715s Loading required package: Biobase 715s Loading required package: BiocGenerics 715s 715s Attaching package: ‘BiocGenerics’ 715s 715s The following objects are masked from ‘package:stats’: 715s 715s IQR, mad, sd, var, xtabs 715s 715s The following objects are masked from ‘package:base’: 715s 715s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 715s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 715s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 715s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 715s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 715s table, tapply, union, unique, unsplit, which.max, which.min 715s 715s Welcome to Bioconductor 715s 715s Vignettes contain introductory material; view with 715s 'browseVignettes()'. To cite Bioconductor, see 715s 'citation("Biobase")', and for packages 'citation("pkgname")'. 715s 715s Loading required package: lattice 715s Loading required package: annotate 715s Loading required package: AnnotationDbi 715s Loading required package: stats4 715s Loading required package: IRanges 715s Loading required package: S4Vectors 716s 716s Attaching package: ‘S4Vectors’ 716s 716s The following object is masked from ‘package:utils’: 716s 716s findMatches 716s 716s The following objects are masked from ‘package:base’: 716s 716s expand.grid, I, unname 716s 718s Loading required package: XML 718s > 718s > 718s Other tests are currently unsupported! 718s They will be progressively added. 718s autopkgtest [02:48:39]: test pkg-r-autopkgtest: -----------------------] 719s autopkgtest [02:48:40]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 719s pkg-r-autopkgtest PASS 719s autopkgtest [02:48:40]: @@@@@@@@@@@@@@@@@@@@ summary 719s pkg-r-autopkgtest PASS 735s Creating nova instance adt-noble-i386-r-bioc-geneplotter-20240322-023640-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...