0s autopkgtest [02:25:49]: starting date and time: 2024-03-22 02:25:49+0000 0s autopkgtest [02:25:49]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [02:25:49]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.fuovx63o/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-ensembldb --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-16.secgroup --name adt-noble-i386-r-bioc-ensembldb-20240322-022549-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 498s autopkgtest [02:34:07]: testbed dpkg architecture: amd64 498s autopkgtest [02:34:07]: testbed apt version: 2.7.12 499s autopkgtest [02:34:07]: test architecture: i386 499s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 499s autopkgtest [02:34:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 499s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 499s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 499s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 499s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3762 kB] 499s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB] 499s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB] 499s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 499s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 499s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 499s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 499s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4236 kB] 499s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1269 kB] 499s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 499s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 499s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 499s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 502s Fetched 11.3 MB in 1s (7881 kB/s) 502s Reading package lists... 507s Reading package lists... 507s Building dependency tree... 507s Reading state information... 507s Calculating upgrade... 508s The following packages will be upgraded: 508s cloud-init fonts-ubuntu-console python3-markupsafe 508s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 508s Need to get 629 kB of archives. 508s After this operation, 11.3 kB disk space will be freed. 508s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 508s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 508s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 508s Preconfiguring packages ... 508s Fetched 629 kB in 0s (28.2 MB/s) 508s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 508s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 508s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 508s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 508s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 508s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 509s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 509s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 509s Setting up cloud-init (24.1.2-0ubuntu1) ... 510s Setting up python3-markupsafe (2.1.5-1build1) ... 510s Processing triggers for man-db (2.12.0-3) ... 511s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 511s Reading package lists... 512s Building dependency tree... 512s Reading state information... 512s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 512s sh: Attempting to set up Debian/Ubuntu apt sources automatically 513s sh: Distribution appears to be Ubuntu 514s Reading package lists... 514s Building dependency tree... 514s Reading state information... 514s eatmydata is already the newest version (131-1). 514s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 514s Reading package lists... 514s Building dependency tree... 514s Reading state information... 515s dbus is already the newest version (1.14.10-4ubuntu1). 515s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 515s Reading package lists... 515s Building dependency tree... 515s Reading state information... 515s rng-tools-debian is already the newest version (2.4). 515s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 515s Reading package lists... 515s Building dependency tree... 515s Reading state information... 516s The following packages will be REMOVED: 516s cloud-init* python3-configobj* python3-debconf* 516s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 516s After this operation, 3256 kB disk space will be freed. 516s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 516s Removing cloud-init (24.1.2-0ubuntu1) ... 517s Removing python3-configobj (5.0.8-3) ... 517s Removing python3-debconf (1.5.86) ... 517s Processing triggers for man-db (2.12.0-3) ... 517s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 517s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 518s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 518s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 518s invoke-rc.d: policy-rc.d denied execution of try-restart. 518s Reading package lists... 518s Building dependency tree... 518s Reading state information... 518s linux-generic is already the newest version (6.8.0-11.11+1). 518s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 519s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 519s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 519s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 521s Reading package lists... 521s Reading package lists... 521s Building dependency tree... 521s Reading state information... 521s Calculating upgrade... 522s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 522s Reading package lists... 522s Building dependency tree... 522s Reading state information... 522s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 522s autopkgtest [02:34:31]: rebooting testbed after setup commands that affected boot 692s autopkgtest [02:37:21]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 693s autopkgtest [02:37:22]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-ensembldb 694s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ensembldb 2.26.0+dfsg-1 (dsc) [2438 B] 694s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ensembldb 2.26.0+dfsg-1 (tar) [1110 kB] 694s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ensembldb 2.26.0+dfsg-1 (diff) [6200 B] 694s gpgv: Signature made Fri Dec 1 04:54:01 2023 UTC 694s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 694s gpgv: issuer "plessy@debian.org" 694s gpgv: Can't check signature: No public key 694s dpkg-source: warning: cannot verify inline signature for ./r-bioc-ensembldb_2.26.0+dfsg-1.dsc: no acceptable signature found 695s autopkgtest [02:37:24]: testing package r-bioc-ensembldb version 2.26.0+dfsg-1 701s autopkgtest [02:37:30]: build not needed 703s autopkgtest [02:37:32]: test pkg-r-autopkgtest: preparing testbed 708s Note, using file '/tmp/autopkgtest.4S0NB3/1-autopkgtest-satdep.dsc' to get the build dependencies 709s Reading package lists... 709s Building dependency tree... 709s Reading state information... 709s Starting pkgProblemResolver with broken count: 0 709s Starting 2 pkgProblemResolver with broken count: 0 709s Done 710s The following NEW packages will be installed: 710s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 710s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 710s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 710s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 710s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 710s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 710s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 710s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 710s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 710s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 710s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 710s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 710s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 710s libjs-highlight.js libjs-jquery libjs-jquery-datatables 710s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 710s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 710s libjs-popper.js libjs-prettify libjs-sifter.js 710s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 710s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 710s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 710s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 710s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 710s libpotrace0 libptexenc1 libquadmath0 libreadline-dev libsharpyuv0 libsm6 710s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 710s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 710s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 710s libxss1 libxt6 libzzip-0-13 linux-libc-dev node-bootstrap-sass 710s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 710s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 710s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 710s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 710s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart 710s r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray 710s r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 710s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 710s r-bioc-ggbio r-bioc-graph r-bioc-gviz r-bioc-interactivedisplaybase 710s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-organismdbi 710s r-bioc-protgenerics r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools 710s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 710s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 710s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 710s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 710s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-broom 710s r-cran-broom.helpers r-cran-bslib r-cran-cachem r-cran-callr 710s r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr r-cran-cluster 710s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 710s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-dbi 710s r-cran-dbplyr r-cran-deldir r-cran-desc r-cran-dichromat r-cran-diffobj 710s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 710s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 710s r-cran-forcats r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 710s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggally 710s r-cran-ggplot2 r-cran-ggstats r-cran-glue r-cran-gridextra r-cran-gtable 710s r-cran-haven r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable 710s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-interp 710s r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr 710s r-cran-labeling r-cran-labelled r-cran-lambda.r r-cran-later r-cran-lattice 710s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 710s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 710s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet 710s r-cran-openssl r-cran-patchwork r-cran-pillar r-cran-pkgbuild 710s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 710s r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 710s r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs 710s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl r-cran-readr 710s r-cran-rematch2 r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang 710s r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite 710s r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 710s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 710s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 710s r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite 710s r-cran-vroom r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 710s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 710s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 710s xdg-utils zip zlib1g-dev 710s 0 upgraded, 355 newly installed, 0 to remove and 0 not upgraded. 710s Need to get 508 MB of archives. 710s After this operation, 1482 MB of additional disk space will be used. 710s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 710s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 710s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 710s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 710s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 710s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 710s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 710s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 710s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 710s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 710s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 710s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 710s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 710s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 710s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 710s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 710s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 710s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 710s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 710s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 710s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 710s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 710s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 710s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 710s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 710s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 710s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 710s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 710s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 710s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 710s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 710s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 710s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 710s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 710s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 710s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 710s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 710s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 710s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 710s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 710s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 710s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 710s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 710s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 710s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 710s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 710s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 711s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 711s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 711s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 711s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 711s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 711s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 711s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 711s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 711s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 711s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 711s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 711s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 711s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 711s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 711s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 711s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 711s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 711s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 711s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 711s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 711s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 711s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 711s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 711s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 711s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 711s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 711s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 711s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 711s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 711s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 711s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 711s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 711s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 711s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 711s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 711s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 711s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 711s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 711s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 711s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 711s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 711s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 711s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 711s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 711s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 711s Get:93 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 711s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 711s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 711s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 711s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 711s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 711s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 711s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 711s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 711s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 711s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 711s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 711s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 711s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 711s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 711s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 711s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 711s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 711s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 711s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 711s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 711s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 711s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 711s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 711s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 711s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 711s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 711s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 711s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 711s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 711s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 711s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 711s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 711s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 711s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 711s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 711s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 711s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 711s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 711s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 711s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 711s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 711s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 711s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 711s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 711s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 711s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 711s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 711s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 711s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 711s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 711s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 711s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 711s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 711s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 711s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 711s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 711s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 711s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 711s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 711s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 711s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 711s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 711s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 711s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 711s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 711s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 711s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 711s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 711s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 711s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 711s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 711s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 711s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 711s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 711s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 711s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 711s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 711s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 711s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 711s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 711s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 711s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 711s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 711s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 711s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 711s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 711s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 711s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 711s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 711s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 711s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 711s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 711s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 712s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 712s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 712s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 712s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 712s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 712s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 712s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 712s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 712s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 712s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 712s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 712s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 712s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 712s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 712s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 712s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 712s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 712s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 712s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 712s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 712s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 712s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 712s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 712s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 712s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 712s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 712s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 712s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 712s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 712s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 712s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 712s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 712s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 712s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 712s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 712s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 712s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 712s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 712s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 712s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 712s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 712s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 712s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 712s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 712s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 712s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 712s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 712s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 712s Get:235 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 712s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 712s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 712s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 712s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 712s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 712s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 712s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dt all 0.31+dfsg-1 [265 kB] 712s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 712s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 712s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 712s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 712s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 712s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 712s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 712s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 712s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 712s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 712s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 712s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 712s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 712s Get:256 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 712s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 712s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 712s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 712s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 713s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 713s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 713s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 713s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 713s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 713s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 713s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 713s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 713s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 713s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 713s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 713s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 713s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 713s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 713s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 713s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 713s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 713s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 713s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 713s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 713s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 713s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 713s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cluster amd64 2.1.6-1 [554 kB] 713s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 713s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rpart amd64 4.1.23-1 [661 kB] 713s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nnet amd64 7.3-19-2 [112 kB] 713s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-foreign amd64 0.8.86-1 [242 kB] 713s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 713s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-data.table amd64 1.14.10+dfsg-1 [1837 kB] 713s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-backports amd64 1.4.1-1 [101 kB] 713s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-checkmate amd64 2.3.1-1 [713 kB] 713s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rstudioapi all 0.15.0-1 [277 kB] 713s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltable all 2.4.2-1 [381 kB] 713s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 713s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 713s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-chron amd64 2.3-61-2 [186 kB] 713s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 713s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-deldir amd64 2.0-4-1 [270 kB] 713s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppeigen amd64 0.3.3.9.4-1 [1189 kB] 713s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 713s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 713s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-acepack amd64 1.4.2-1 [61.3 kB] 713s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hmisc amd64 5.1-1-1 [3491 kB] 713s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 713s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 713s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 713s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 713s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 713s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 713s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 713s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 713s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 713s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 713s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 713s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 713s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 713s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 713s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 713s Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 713s Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-variantannotation amd64 1.48.1-1 [3527 kB] 713s Get:321 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 713s Get:322 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 714s Get:323 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biovizbase amd64 1.50.0-1 [2665 kB] 714s Get:324 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 714s Get:325 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 714s Get:326 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-graph amd64 1.80.0-1 [1289 kB] 714s Get:327 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rbgl amd64 1.78.0+dfsg-1 [551 kB] 714s Get:328 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-organismdbi all 1.44.0+dfsg-1 [456 kB] 714s Get:329 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-broom all 1.0.5+dfsg-1 [1729 kB] 714s Get:330 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-forcats all 1.0.0-1 [369 kB] 714s Get:331 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-clipr all 0.8.0-1 [53.5 kB] 714s Get:332 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] 714s Get:333 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vroom amd64 1.6.5-1 [848 kB] 714s Get:334 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-readr amd64 2.1.5-1 [766 kB] 714s Get:335 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-haven amd64 2.5.4-1 [346 kB] 714s Get:336 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labelled all 2.12.0-2 [312 kB] 714s Get:337 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-broom.helpers all 1.14.0-2 [557 kB] 714s Get:338 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-patchwork all 1.2.0-1 [3161 kB] 714s Get:339 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggstats all 0.5.1-2 [839 kB] 714s Get:340 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggally all 2.2.1-1 [2022 kB] 714s Get:341 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ggbio all 1.50.0-1 [2939 kB] 714s Get:342 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-gviz all 1.46.1+dfsg-1 [4855 kB] 714s Get:343 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 714s Get:344 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 714s Get:345 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 714s Get:346 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 714s Get:347 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 714s Get:348 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 714s Get:349 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 714s Get:350 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 714s Get:351 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 714s Get:352 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 714s Get:353 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 714s Get:354 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 714s Get:355 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 715s Preconfiguring packages ... 715s Fetched 508 MB in 4s (126 MB/s) 715s Selecting previously unselected package libc-dev-bin. 715s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 715s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 715s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 715s Selecting previously unselected package linux-libc-dev:amd64. 715s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 715s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 715s Selecting previously unselected package libcrypt-dev:amd64. 715s Preparing to unpack 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unselected package libjs-json. 723s Preparing to unpack .../090-libjs-json_0~20221030+~1.0.8-1_all.deb ... 723s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 723s Selecting previously unselected package libjs-lunr. 723s Preparing to unpack .../091-libjs-lunr_2.3.9~dfsg-2_all.deb ... 723s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 723s Selecting previously unselected package libjs-prettify. 723s Preparing to unpack .../092-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 723s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 723s Selecting previously unselected package libkpathsea6:amd64. 723s Preparing to unpack .../093-libkpathsea6_2023.20230311.66589-9_amd64.deb ... 723s Unpacking libkpathsea6:amd64 (2023.20230311.66589-9) ... 723s Selecting previously unselected package liblapack3:amd64. 723s Preparing to unpack .../094-liblapack3_3.12.0-3_amd64.deb ... 723s Unpacking liblapack3:amd64 (3.12.0-3) ... 723s Selecting previously unselected package liblapack-dev:amd64. 723s Preparing to unpack .../095-liblapack-dev_3.12.0-3_amd64.deb ... 723s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 723s Selecting previously unselected package liblerc4:amd64. 723s Preparing to unpack .../096-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 723s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 723s Selecting previously unselected package liblua5.4-0:amd64. 723s Preparing to unpack .../097-liblua5.4-0_5.4.6-3_amd64.deb ... 723s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 723s Selecting previously unselected package libncurses-dev:amd64. 723s Preparing to unpack .../098-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 723s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 723s Selecting previously unselected package libthai-data. 723s Preparing to unpack .../099-libthai-data_0.1.29-2_all.deb ... 723s Unpacking libthai-data (0.1.29-2) ... 724s Selecting previously unselected package libthai0:amd64. 724s Preparing to unpack .../100-libthai0_0.1.29-2_amd64.deb ... 724s Unpacking libthai0:amd64 (0.1.29-2) ... 724s Selecting previously unselected package libpango-1.0-0:amd64. 724s Preparing to unpack .../101-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 724s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 724s Selecting previously unselected package libpangoft2-1.0-0:amd64. 724s Preparing to unpack .../102-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 724s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 724s Selecting previously unselected package libpangocairo-1.0-0:amd64. 724s Preparing to unpack .../103-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 724s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 724s Selecting previously unselected package libpaper1:amd64. 724s Preparing to unpack .../104-libpaper1_1.1.29_amd64.deb ... 724s Unpacking libpaper1:amd64 (1.1.29) ... 724s Selecting previously unselected package libpaper-utils. 724s Preparing to unpack .../105-libpaper-utils_1.1.29_amd64.deb ... 724s Unpacking libpaper-utils (1.1.29) ... 724s Selecting previously unselected package libpcre2-16-0:amd64. 724s Preparing to unpack .../106-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 724s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 724s Selecting previously unselected package libpcre2-32-0:amd64. 724s Preparing to unpack .../107-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 724s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 724s Selecting previously unselected package libpcre2-posix3:amd64. 724s Preparing to unpack .../108-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 724s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 724s Selecting previously unselected package libpcre2-dev:amd64. 724s Preparing to unpack .../109-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 724s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 724s Selecting previously unselected package libpkgconf3:amd64. 724s Preparing to unpack .../110-libpkgconf3_1.8.1-2_amd64.deb ... 724s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 724s Selecting previously unselected package zlib1g-dev:amd64. 724s Preparing to unpack .../111-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 724s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 724s Selecting previously unselected package libpng-dev:amd64. 724s Preparing to unpack .../112-libpng-dev_1.6.43-1_amd64.deb ... 724s Unpacking libpng-dev:amd64 (1.6.43-1) ... 724s Selecting previously unselected package libpotrace0:amd64. 724s Preparing to unpack .../113-libpotrace0_1.16-2_amd64.deb ... 724s Unpacking libpotrace0:amd64 (1.16-2) ... 724s Selecting previously unselected package libptexenc1:amd64. 724s Preparing to unpack .../114-libptexenc1_2023.20230311.66589-9_amd64.deb ... 724s Unpacking libptexenc1:amd64 (2023.20230311.66589-9) ... 724s Selecting previously unselected package libreadline-dev:amd64. 724s Preparing to unpack .../115-libreadline-dev_8.2-3_amd64.deb ... 724s Unpacking libreadline-dev:amd64 (8.2-3) ... 724s Selecting previously unselected package libsharpyuv0:amd64. 724s Preparing to unpack .../116-libsharpyuv0_1.3.2-0.4_amd64.deb ... 724s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 724s Selecting previously unselected package libsm6:amd64. 724s Preparing to unpack .../117-libsm6_2%3a1.2.3-1build2_amd64.deb ... 724s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 724s Selecting previously unselected package libsynctex2:amd64. 724s Preparing to unpack .../118-libsynctex2_2023.20230311.66589-9_amd64.deb ... 724s Unpacking libsynctex2:amd64 (2023.20230311.66589-9) ... 724s Selecting previously unselected package libtcl8.6:amd64. 724s Preparing to unpack .../119-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 724s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 724s Selecting previously unselected package libteckit0:amd64. 724s Preparing to unpack .../120-libteckit0_2.5.12+ds1-1_amd64.deb ... 724s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 724s Selecting previously unselected package libtexlua53-5:amd64. 724s Preparing to unpack .../121-libtexlua53-5_2023.20230311.66589-9_amd64.deb ... 724s Unpacking libtexlua53-5:amd64 (2023.20230311.66589-9) ... 724s Selecting previously unselected package libjbig0:amd64. 724s Preparing to unpack .../122-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 724s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 724s Selecting previously unselected package libwebp7:amd64. 724s Preparing to unpack .../123-libwebp7_1.3.2-0.4_amd64.deb ... 724s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 724s Selecting previously unselected package libtiff6:amd64. 724s Preparing to unpack .../124-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 724s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 724s Selecting previously unselected package libxft2:amd64. 724s Preparing to unpack .../125-libxft2_2.3.6-1_amd64.deb ... 724s Unpacking libxft2:amd64 (2.3.6-1) ... 724s Selecting previously unselected package libxss1:amd64. 724s Preparing to unpack .../126-libxss1_1%3a1.2.3-1build2_amd64.deb ... 724s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 724s Selecting previously unselected package libtk8.6:amd64. 724s Preparing to unpack .../127-libtk8.6_8.6.13-2_amd64.deb ... 724s Unpacking libtk8.6:amd64 (8.6.13-2) ... 724s Selecting previously unselected package libxt6:amd64. 724s Preparing to unpack .../128-libxt6_1%3a1.2.1-1.1_amd64.deb ... 724s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 725s Selecting previously unselected package libxmu6:amd64. 725s Preparing to unpack .../129-libxmu6_2%3a1.1.3-3_amd64.deb ... 725s Unpacking libxmu6:amd64 (2:1.1.3-3) ... 725s Selecting previously unselected package libxpm4:amd64. 725s Preparing to unpack .../130-libxpm4_1%3a3.5.17-1_amd64.deb ... 725s Unpacking libxpm4:amd64 (1:3.5.17-1) ... 725s Selecting previously unselected package libxaw7:amd64. 725s Preparing to unpack .../131-libxaw7_2%3a1.0.14-1_amd64.deb ... 725s Unpacking libxaw7:amd64 (2:1.0.14-1) ... 725s Selecting previously unselected package libxi6:amd64. 725s Preparing to unpack .../132-libxi6_2%3a1.8.1-1_amd64.deb ... 725s Unpacking libxi6:amd64 (2:1.8.1-1) ... 725s Selecting previously unselected package libzzip-0-13:amd64. 725s Preparing to unpack .../133-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... 725s Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 725s Selecting previously unselected package node-bootstrap-sass. 725s Preparing to unpack .../134-node-bootstrap-sass_3.4.3-2_all.deb ... 725s Unpacking node-bootstrap-sass (3.4.3-2) ... 725s Selecting previously unselected package node-html5shiv. 725s Preparing to unpack .../135-node-html5shiv_3.7.3+dfsg-5_all.deb ... 725s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 725s Selecting previously unselected package node-normalize.css. 725s Preparing to unpack .../136-node-normalize.css_8.0.1-5_all.deb ... 725s Unpacking node-normalize.css (8.0.1-5) ... 725s Selecting previously unselected package pandoc-data. 725s Preparing to unpack .../137-pandoc-data_3.1.3-1_all.deb ... 725s Unpacking pandoc-data (3.1.3-1) ... 725s Selecting previously unselected package pandoc. 725s Preparing to unpack .../138-pandoc_3.1.3+ds-2_amd64.deb ... 725s Unpacking pandoc (3.1.3+ds-2) ... 726s Selecting previously unselected package pkgconf-bin. 726s Preparing to unpack .../139-pkgconf-bin_1.8.1-2_amd64.deb ... 726s Unpacking pkgconf-bin (1.8.1-2) ... 726s Selecting previously unselected package pkgconf:amd64. 726s Preparing to unpack .../140-pkgconf_1.8.1-2_amd64.deb ... 726s Unpacking pkgconf:amd64 (1.8.1-2) ... 726s Selecting previously unselected package pkg-config:amd64. 726s Preparing to unpack .../141-pkg-config_1.8.1-2_amd64.deb ... 726s Unpacking pkg-config:amd64 (1.8.1-2) ... 726s Selecting previously unselected package zip. 726s Preparing to unpack .../142-zip_3.0-13_amd64.deb ... 726s Unpacking zip (3.0-13) ... 726s Selecting previously unselected package unzip. 726s Preparing to unpack .../143-unzip_6.0-28ubuntu3_amd64.deb ... 726s Unpacking unzip (6.0-28ubuntu3) ... 726s Selecting previously unselected package xdg-utils. 726s Preparing to unpack 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727s Preparing to unpack .../161-r-cran-blob_1.2.4-1_all.deb ... 727s Unpacking r-cran-blob (1.2.4-1) ... 727s Selecting previously unselected package r-cran-fastmap. 727s Preparing to unpack .../162-r-cran-fastmap_1.1.1-1_amd64.deb ... 727s Unpacking r-cran-fastmap (1.1.1-1) ... 727s Selecting previously unselected package r-cran-cachem. 727s Preparing to unpack .../163-r-cran-cachem_1.0.8-1_amd64.deb ... 727s Unpacking r-cran-cachem (1.0.8-1) ... 727s Selecting previously unselected package r-cran-memoise. 727s Preparing to unpack .../164-r-cran-memoise_2.0.1-1_all.deb ... 727s Unpacking r-cran-memoise (2.0.1-1) ... 727s Selecting previously unselected package r-cran-pkgconfig. 727s Preparing to unpack .../165-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 727s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 727s Selecting previously unselected package r-cran-plogr. 727s Preparing to unpack .../166-r-cran-plogr_0.2.0-3build1_all.deb ... 727s Unpacking r-cran-plogr (0.2.0-3build1) ... 727s Selecting previously unselected package r-cran-cpp11. 727s Preparing to unpack .../167-r-cran-cpp11_0.4.7-1_all.deb ... 727s Unpacking r-cran-cpp11 (0.4.7-1) ... 727s Selecting previously unselected package r-cran-rsqlite. 727s Preparing to unpack .../168-r-cran-rsqlite_2.3.4-1_amd64.deb ... 727s Unpacking r-cran-rsqlite (2.3.4-1) ... 727s Selecting previously unselected package r-cran-curl. 727s Preparing to unpack .../169-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 727s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 727s Selecting previously unselected package r-cran-jsonlite. 728s Preparing to unpack .../170-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 728s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 728s Selecting previously unselected package r-cran-mime. 728s Preparing to unpack .../171-r-cran-mime_0.12-1_amd64.deb ... 728s Unpacking r-cran-mime (0.12-1) ... 728s Selecting previously unselected package r-cran-sys. 728s Preparing to unpack .../172-r-cran-sys_3.4.2-1_amd64.deb ... 728s Unpacking r-cran-sys (3.4.2-1) ... 728s Selecting previously unselected package r-cran-askpass. 728s Preparing to unpack .../173-r-cran-askpass_1.2.0-1_amd64.deb ... 728s Unpacking r-cran-askpass (1.2.0-1) ... 728s Selecting previously unselected package r-cran-openssl. 728s Preparing to unpack .../174-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 728s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 728s Selecting previously unselected package r-cran-r6. 728s Preparing to unpack .../175-r-cran-r6_2.5.1-1_all.deb ... 728s Unpacking r-cran-r6 (2.5.1-1) ... 728s Selecting previously unselected package r-cran-httr. 728s Preparing to unpack .../176-r-cran-httr_1.4.7+dfsg-1_all.deb ... 728s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 728s Selecting previously unselected package r-cran-png. 728s Preparing to unpack .../177-r-cran-png_0.1-8-1_amd64.deb ... 728s Unpacking r-cran-png (0.1-8-1) ... 728s Selecting previously unselected package r-bioc-zlibbioc. 728s Preparing to unpack .../178-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 728s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 728s Selecting previously unselected package r-bioc-xvector. 728s Preparing to unpack .../179-r-bioc-xvector_0.42.0-1_amd64.deb ... 728s Unpacking r-bioc-xvector (0.42.0-1) ... 728s Selecting previously unselected package r-cran-bitops. 728s Preparing to unpack .../180-r-cran-bitops_1.0-7-1_amd64.deb ... 728s Unpacking r-cran-bitops (1.0-7-1) ... 728s Selecting previously unselected package r-cran-rcurl. 728s Preparing to unpack .../181-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 728s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 728s Selecting previously unselected package r-bioc-genomeinfodbdata. 728s Preparing to unpack .../182-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 728s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 728s Selecting previously unselected package r-bioc-genomeinfodb. 728s Preparing to unpack .../183-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 728s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 728s Selecting previously unselected package r-cran-crayon. 728s Preparing to unpack .../184-r-cran-crayon_1.5.2-1_all.deb ... 728s Unpacking r-cran-crayon (1.5.2-1) ... 728s Selecting previously unselected package r-bioc-biostrings. 728s Preparing to unpack .../185-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 728s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 728s Selecting previously unselected package r-bioc-keggrest. 728s Preparing to unpack .../186-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 728s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 728s Selecting previously unselected package r-bioc-annotationdbi. 728s Preparing to unpack .../187-r-bioc-annotationdbi_1.64.1-1_all.deb ... 728s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 728s Selecting previously unselected package r-bioc-genomicranges. 728s Preparing to unpack .../188-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 728s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 729s Selecting previously unselected package r-cran-lazyeval. 729s Preparing to unpack .../189-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 729s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 729s Selecting previously unselected package r-bioc-annotationfilter. 729s Preparing to unpack .../190-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 729s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 729s Selecting previously unselected package r-cran-generics. 729s Preparing to unpack .../191-r-cran-generics_0.1.3-1_all.deb ... 729s Unpacking r-cran-generics (0.1.3-1) ... 729s Selecting previously unselected package r-cran-magrittr. 729s Preparing to unpack .../192-r-cran-magrittr_2.0.3-1_amd64.deb ... 729s Unpacking r-cran-magrittr (2.0.3-1) ... 729s Selecting previously unselected package r-cran-fansi. 729s Preparing to unpack .../193-r-cran-fansi_1.0.5-1_amd64.deb ... 729s Unpacking r-cran-fansi (1.0.5-1) ... 729s Selecting previously unselected package r-cran-utf8. 729s Preparing to unpack .../194-r-cran-utf8_1.2.4-1_amd64.deb ... 729s Unpacking r-cran-utf8 (1.2.4-1) ... 729s Selecting previously unselected package r-cran-pillar. 729s Preparing to unpack .../195-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 729s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 729s Selecting previously unselected package r-cran-tibble. 729s Preparing to unpack .../196-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 729s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 729s Selecting previously unselected package r-cran-withr. 729s Preparing to unpack .../197-r-cran-withr_2.5.0-1_all.deb ... 729s Unpacking r-cran-withr (2.5.0-1) ... 729s Selecting previously unselected package r-cran-tidyselect. 729s Preparing to unpack .../198-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 729s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 729s Selecting previously unselected package r-cran-dplyr. 729s Preparing to unpack .../199-r-cran-dplyr_1.1.4-1_amd64.deb ... 729s Unpacking r-cran-dplyr (1.1.4-1) ... 729s Selecting previously unselected package r-cran-purrr. 729s Preparing to unpack .../200-r-cran-purrr_1.0.2-1_amd64.deb ... 729s Unpacking r-cran-purrr (1.0.2-1) ... 729s Selecting previously unselected package r-cran-stringi. 729s Preparing to unpack .../201-r-cran-stringi_1.8.3-1_amd64.deb ... 729s Unpacking r-cran-stringi (1.8.3-1) ... 729s Selecting previously unselected package r-cran-stringr. 729s Preparing to unpack .../202-r-cran-stringr_1.5.1-1_all.deb ... 729s Unpacking r-cran-stringr (1.5.1-1) ... 729s Selecting previously unselected package r-cran-tidyr. 729s Preparing to unpack .../203-r-cran-tidyr_1.3.1-1_amd64.deb ... 729s Unpacking r-cran-tidyr (1.3.1-1) ... 729s Selecting previously unselected package r-cran-dbplyr. 729s Preparing to unpack .../204-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 729s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 729s Selecting previously unselected package r-cran-filelock. 729s Preparing to unpack .../205-r-cran-filelock_1.0.3-1_amd64.deb ... 729s Unpacking r-cran-filelock (1.0.3-1) ... 729s Selecting previously unselected package r-bioc-biocfilecache. 729s Preparing to unpack .../206-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 729s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 729s Selecting previously unselected package r-cran-biocmanager. 729s Preparing to unpack .../207-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 729s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 729s Selecting previously unselected package r-bioc-biocversion. 729s Preparing to unpack .../208-r-bioc-biocversion_3.18.1-1_all.deb ... 729s Unpacking r-bioc-biocversion (3.18.1-1) ... 729s Selecting previously unselected package r-cran-rappdirs. 729s Preparing to unpack .../209-r-cran-rappdirs_0.3.3-1_amd64.deb ... 729s Unpacking r-cran-rappdirs (0.3.3-1) ... 729s Selecting previously unselected package r-cran-yaml. 729s Preparing to unpack .../210-r-cran-yaml_2.3.8-1_amd64.deb ... 729s Unpacking r-cran-yaml (2.3.8-1) ... 729s Selecting previously unselected package r-cran-littler. 729s Preparing to unpack .../211-r-cran-littler_0.3.19-1_amd64.deb ... 729s Unpacking r-cran-littler (0.3.19-1) ... 730s Selecting previously unselected package r-cran-pkgkitten. 730s Preparing to unpack .../212-r-cran-pkgkitten_0.2.3-1_all.deb ... 730s Unpacking r-cran-pkgkitten (0.2.3-1) ... 730s Selecting previously unselected package r-cran-rcpp. 730s Preparing to unpack .../213-r-cran-rcpp_1.0.12-1_amd64.deb ... 730s Unpacking r-cran-rcpp (1.0.12-1) ... 730s Selecting previously unselected package r-cran-later. 730s Preparing to unpack .../214-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 730s Unpacking r-cran-later (1.3.2+dfsg-1) ... 730s Selecting previously unselected package r-cran-promises. 730s Preparing to unpack .../215-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 730s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 730s Selecting previously unselected package r-cran-httpuv. 730s Preparing to unpack .../216-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 730s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 730s Selecting previously unselected package r-cran-xtable. 730s Preparing to unpack .../217-r-cran-xtable_1%3a1.8-4-2_all.deb ... 730s Unpacking r-cran-xtable (1:1.8-4-2) ... 730s Selecting previously unselected package r-cran-base64enc. 730s Preparing to unpack .../218-r-cran-base64enc_0.1-3-3_amd64.deb ... 730s Unpacking r-cran-base64enc (0.1-3-3) ... 730s Selecting previously unselected package r-cran-digest. 730s Preparing to unpack .../219-r-cran-digest_0.6.34-1_amd64.deb ... 730s Unpacking r-cran-digest (0.6.34-1) ... 730s Selecting previously unselected package r-cran-ellipsis. 730s Preparing to unpack .../220-r-cran-ellipsis_0.3.2-2_amd64.deb ... 730s Unpacking r-cran-ellipsis (0.3.2-2) ... 730s Selecting previously unselected package r-cran-htmltools. 730s Preparing to unpack .../221-r-cran-htmltools_0.5.7-1_amd64.deb ... 730s Unpacking r-cran-htmltools (0.5.7-1) ... 730s Selecting previously unselected package r-cran-fontawesome. 730s Preparing to unpack .../222-r-cran-fontawesome_0.5.2-1_all.deb ... 730s Unpacking r-cran-fontawesome (0.5.2-1) ... 730s Selecting previously unselected package r-cran-sourcetools. 730s Preparing to unpack .../223-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 730s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 730s Selecting previously unselected package r-cran-commonmark. 730s Preparing to unpack .../224-r-cran-commonmark_1.9.1-1_amd64.deb ... 730s Unpacking r-cran-commonmark (1.9.1-1) ... 730s Selecting previously unselected package r-cran-jquerylib. 730s Preparing to unpack .../225-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 730s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 730s Selecting previously unselected package r-cran-fs. 730s Preparing to unpack .../226-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 730s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 730s Selecting previously unselected package r-cran-sass. 730s Preparing to unpack .../227-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 730s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 730s Selecting previously unselected package r-cran-bslib. 730s Preparing to unpack .../228-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 730s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 730s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 730s Preparing to unpack .../229-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 730s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 730s Selecting previously unselected package r-cran-shiny. 730s Preparing to unpack .../230-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 730s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 731s Selecting previously unselected package r-cran-evaluate. 731s Preparing to unpack .../231-r-cran-evaluate_0.23-1_all.deb ... 731s Unpacking r-cran-evaluate (0.23-1) ... 731s Selecting previously unselected package r-cran-xfun. 731s Preparing to unpack .../232-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 731s Unpacking r-cran-xfun (0.41+dfsg-1) ... 731s Selecting previously unselected package r-cran-highr. 731s Preparing to unpack .../233-r-cran-highr_0.10+dfsg-1_all.deb ... 731s Unpacking r-cran-highr (0.10+dfsg-1) ... 731s Selecting previously unselected package libjs-mathjax. 731s Preparing to unpack .../234-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 731s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 731s Selecting previously unselected package r-cran-knitr. 731s Preparing to unpack .../235-r-cran-knitr_1.45+dfsg-1_all.deb ... 731s Unpacking r-cran-knitr (1.45+dfsg-1) ... 732s Selecting previously unselected package r-cran-tinytex. 732s Preparing to unpack .../236-r-cran-tinytex_0.49-1_all.deb ... 732s Unpacking r-cran-tinytex (0.49-1) ... 732s Selecting previously unselected package libjs-modernizr. 732s Preparing to unpack .../237-libjs-modernizr_2.6.2+ds1-5_all.deb ... 732s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 732s Selecting previously unselected package r-cran-rmarkdown. 732s Preparing to unpack .../238-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 732s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 732s Selecting previously unselected package r-cran-htmlwidgets. 732s Preparing to unpack .../239-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 732s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 732s Selecting previously unselected package r-cran-crosstalk. 732s Preparing to unpack .../240-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 732s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 732s Selecting previously unselected package r-cran-dt. 732s Preparing to unpack .../241-r-cran-dt_0.31+dfsg-1_all.deb ... 732s Unpacking r-cran-dt (0.31+dfsg-1) ... 732s Selecting previously unselected package r-bioc-interactivedisplaybase. 732s Preparing to unpack .../242-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 732s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 732s Selecting previously unselected package r-bioc-annotationhub. 732s Preparing to unpack .../243-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 732s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 732s Selecting previously unselected package r-bioc-biocio. 732s Preparing to unpack .../244-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 732s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 732s Selecting previously unselected package r-cran-formatr. 732s Preparing to unpack .../245-r-cran-formatr_1.14-1_all.deb ... 732s Unpacking r-cran-formatr (1.14-1) ... 732s Selecting previously unselected package r-cran-lambda.r. 732s Preparing to unpack .../246-r-cran-lambda.r_1.2.4-2build1_all.deb ... 732s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 732s Selecting previously unselected package r-cran-futile.options. 732s Preparing to unpack .../247-r-cran-futile.options_1.0.1-3build1_all.deb ... 732s Unpacking r-cran-futile.options (1.0.1-3build1) ... 732s Selecting previously unselected package r-cran-futile.logger. 732s Preparing to unpack .../248-r-cran-futile.logger_1.4.3-4build1_all.deb ... 732s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 732s Selecting previously unselected package r-cran-snow. 732s Preparing to unpack .../249-r-cran-snow_1%3a0.4.4-2_all.deb ... 732s Unpacking r-cran-snow (1:0.4.4-2) ... 732s Selecting previously unselected package r-cran-codetools. 732s Preparing to unpack .../250-r-cran-codetools_0.2-19-1_all.deb ... 732s Unpacking r-cran-codetools (0.2-19-1) ... 732s Selecting previously unselected package r-cran-bh. 732s Preparing to unpack .../251-r-cran-bh_1.84.0-1_all.deb ... 732s Unpacking r-cran-bh (1.84.0-1) ... 732s Selecting previously unselected package r-bioc-biocparallel. 732s Preparing to unpack .../252-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 732s Unpacking r-bioc-biocparallel (1.36.0-1) ... 732s Selecting previously unselected package r-cran-bookdown. 732s Preparing to unpack .../253-r-cran-bookdown_0.37+dfsg-1_all.deb ... 732s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 732s Selecting previously unselected package tex-common. 732s Preparing to unpack .../254-tex-common_6.18_all.deb ... 732s Unpacking tex-common (6.18) ... 732s Selecting previously unselected package t1utils. 732s Preparing to unpack .../255-t1utils_1.41-4build2_amd64.deb ... 732s Unpacking t1utils (1.41-4build2) ... 732s Selecting previously unselected package texlive-binaries. 732s Preparing to unpack .../256-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 732s Unpacking texlive-binaries (2023.20230311.66589-9) ... 733s Selecting previously unselected package texlive-base. 733s Preparing to unpack .../257-texlive-base_2023.20240207-1_all.deb ... 733s Unpacking texlive-base (2023.20240207-1) ... 734s Selecting previously unselected package texlive-latex-base. 734s Preparing to unpack .../258-texlive-latex-base_2023.20240207-1_all.deb ... 734s Unpacking texlive-latex-base (2023.20240207-1) ... 734s Selecting previously unselected package texlive-bibtex-extra. 734s Preparing to unpack .../259-texlive-bibtex-extra_2023.20240207-1_all.deb ... 734s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 738s Selecting previously unselected package r-bioc-biocstyle. 738s Preparing to unpack .../260-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 738s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 738s Selecting previously unselected package r-cran-xml. 738s Preparing to unpack .../261-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 738s Unpacking r-cran-xml (3.99-0.16.1-1) ... 738s Selecting previously unselected package r-cran-hms. 738s Preparing to unpack .../262-r-cran-hms_1.1.3-1_all.deb ... 738s Unpacking r-cran-hms (1.1.3-1) ... 738s Selecting previously unselected package r-cran-prettyunits. 738s Preparing to unpack .../263-r-cran-prettyunits_1.2.0-1_all.deb ... 738s Unpacking r-cran-prettyunits (1.2.0-1) ... 738s Selecting previously unselected package r-cran-progress. 738s Preparing to unpack .../264-r-cran-progress_1.2.3-1_all.deb ... 738s Unpacking r-cran-progress (1.2.3-1) ... 738s Selecting previously unselected package r-cran-xml2. 738s Preparing to unpack .../265-r-cran-xml2_1.3.6-1_amd64.deb ... 738s Unpacking r-cran-xml2 (1.3.6-1) ... 738s Selecting previously unselected package r-bioc-biomart. 738s Preparing to unpack .../266-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 738s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 738s Selecting previously unselected package r-cran-farver. 738s Preparing to unpack .../267-r-cran-farver_2.1.1-1_amd64.deb ... 738s Unpacking r-cran-farver (2.1.1-1) ... 738s Selecting previously unselected package r-cran-labeling. 738s Preparing to unpack .../268-r-cran-labeling_0.4.3-1_all.deb ... 738s Unpacking r-cran-labeling (0.4.3-1) ... 738s Selecting previously unselected package r-cran-colorspace. 738s Preparing to unpack .../269-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 738s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 738s Selecting previously unselected package r-cran-munsell. 738s Preparing to unpack .../270-r-cran-munsell_0.5.0-2build1_all.deb ... 738s Unpacking r-cran-munsell (0.5.0-2build1) ... 738s Selecting previously unselected package r-cran-rcolorbrewer. 738s Preparing to unpack .../271-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 738s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 739s Selecting previously unselected package r-cran-viridislite. 739s Preparing to unpack .../272-r-cran-viridislite_0.4.2-2_all.deb ... 739s Unpacking r-cran-viridislite (0.4.2-2) ... 739s Selecting previously unselected package r-cran-scales. 739s Preparing to unpack .../273-r-cran-scales_1.3.0-1_all.deb ... 739s Unpacking r-cran-scales (1.3.0-1) ... 739s Selecting previously unselected package r-cran-gtable. 739s Preparing to unpack .../274-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 739s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 739s Selecting previously unselected package r-cran-isoband. 739s Preparing to unpack .../275-r-cran-isoband_0.2.7-1_amd64.deb ... 739s Unpacking r-cran-isoband (0.2.7-1) ... 739s Selecting previously unselected package r-cran-mass. 739s Preparing to unpack .../276-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 739s Unpacking r-cran-mass (7.3-60.0.1-1) ... 739s Selecting previously unselected package r-cran-lattice. 739s Preparing to unpack .../277-r-cran-lattice_0.22-5-1_amd64.deb ... 739s Unpacking r-cran-lattice (0.22-5-1) ... 739s Selecting previously unselected package r-cran-nlme. 739s Preparing to unpack .../278-r-cran-nlme_3.1.164-1_amd64.deb ... 739s Unpacking r-cran-nlme (3.1.164-1) ... 739s Selecting previously unselected package r-cran-matrix. 739s Preparing to unpack .../279-r-cran-matrix_1.6-5-1_amd64.deb ... 739s Unpacking r-cran-matrix (1.6-5-1) ... 739s Selecting previously unselected package r-cran-mgcv. 739s Preparing to unpack .../280-r-cran-mgcv_1.9-1-1_amd64.deb ... 739s Unpacking r-cran-mgcv (1.9-1-1) ... 739s Selecting previously unselected package r-cran-ggplot2. 739s Preparing to unpack .../281-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 739s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 739s Selecting previously unselected package r-cran-cluster. 739s Preparing to unpack .../282-r-cran-cluster_2.1.6-1_amd64.deb ... 739s Unpacking r-cran-cluster (2.1.6-1) ... 739s Selecting previously unselected package r-cran-survival. 739s Preparing to unpack .../283-r-cran-survival_3.5-8-1_amd64.deb ... 739s Unpacking r-cran-survival (3.5-8-1) ... 739s Selecting previously unselected package r-cran-rpart. 739s Preparing to unpack .../284-r-cran-rpart_4.1.23-1_amd64.deb ... 739s Unpacking r-cran-rpart (4.1.23-1) ... 739s Selecting previously unselected package r-cran-nnet. 739s Preparing to unpack .../285-r-cran-nnet_7.3-19-2_amd64.deb ... 739s Unpacking r-cran-nnet (7.3-19-2) ... 739s Selecting previously unselected package r-cran-foreign. 739s Preparing to unpack .../286-r-cran-foreign_0.8.86-1_amd64.deb ... 739s Unpacking r-cran-foreign (0.8.86-1) ... 739s Selecting previously unselected package r-cran-gridextra. 739s Preparing to unpack .../287-r-cran-gridextra_2.3-3build1_all.deb ... 739s Unpacking r-cran-gridextra (2.3-3build1) ... 739s Selecting previously unselected package r-cran-data.table. 739s Preparing to unpack .../288-r-cran-data.table_1.14.10+dfsg-1_amd64.deb ... 739s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 740s Selecting previously unselected package r-cran-backports. 740s Preparing to unpack .../289-r-cran-backports_1.4.1-1_amd64.deb ... 740s Unpacking r-cran-backports (1.4.1-1) ... 740s Selecting previously unselected package r-cran-checkmate. 740s Preparing to unpack .../290-r-cran-checkmate_2.3.1-1_amd64.deb ... 740s Unpacking r-cran-checkmate (2.3.1-1) ... 740s Selecting previously unselected package r-cran-rstudioapi. 740s Preparing to unpack .../291-r-cran-rstudioapi_0.15.0-1_all.deb ... 740s Unpacking r-cran-rstudioapi (0.15.0-1) ... 740s Selecting previously unselected package r-cran-htmltable. 740s Preparing to unpack .../292-r-cran-htmltable_2.4.2-1_all.deb ... 740s Unpacking r-cran-htmltable (2.4.2-1) ... 740s Selecting previously unselected package r-cran-viridis. 740s Preparing to unpack .../293-r-cran-viridis_0.6.5-1_all.deb ... 740s Unpacking r-cran-viridis (0.6.5-1) ... 740s Selecting previously unselected package r-cran-formula. 740s Preparing to unpack .../294-r-cran-formula_1.2-5-1_all.deb ... 740s Unpacking r-cran-formula (1.2-5-1) ... 740s Selecting previously unselected package r-cran-chron. 740s Preparing to unpack .../295-r-cran-chron_2.3-61-2_amd64.deb ... 740s Unpacking r-cran-chron (2.3-61-2) ... 740s Selecting previously unselected package r-cran-jpeg. 740s Preparing to unpack .../296-r-cran-jpeg_0.1-10-1_amd64.deb ... 740s Unpacking r-cran-jpeg (0.1-10-1) ... 740s Selecting previously unselected package r-cran-deldir. 740s Preparing to unpack .../297-r-cran-deldir_2.0-4-1_amd64.deb ... 740s Unpacking r-cran-deldir (2.0-4-1) ... 740s Selecting previously unselected package r-cran-rcppeigen. 740s Preparing to unpack .../298-r-cran-rcppeigen_0.3.3.9.4-1_amd64.deb ... 740s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 740s Selecting previously unselected package r-cran-interp. 740s Preparing to unpack .../299-r-cran-interp_1.1-6-1_amd64.deb ... 740s Unpacking r-cran-interp (1.1-6-1) ... 740s Selecting previously unselected package r-cran-latticeextra. 740s Preparing to unpack .../300-r-cran-latticeextra_0.6-30-1_all.deb ... 740s Unpacking r-cran-latticeextra (0.6-30-1) ... 740s Selecting previously unselected package r-cran-acepack. 740s Preparing to unpack .../301-r-cran-acepack_1.4.2-1_amd64.deb ... 740s Unpacking r-cran-acepack (1.4.2-1) ... 740s Selecting previously unselected package r-cran-hmisc. 740s Preparing to unpack .../302-r-cran-hmisc_5.1-1-1_amd64.deb ... 740s Unpacking r-cran-hmisc (5.1-1-1) ... 740s Selecting previously unselected package r-cran-dichromat. 740s Preparing to unpack .../303-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 740s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 740s Selecting previously unselected package r-cran-matrixstats. 740s Preparing to unpack .../304-r-cran-matrixstats_1.2.0-1_amd64.deb ... 740s Unpacking r-cran-matrixstats (1.2.0-1) ... 740s Selecting previously unselected package r-bioc-matrixgenerics. 740s Preparing to unpack .../305-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 740s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 740s Selecting previously unselected package r-cran-abind. 740s Preparing to unpack .../306-r-cran-abind_1.4-5-2_all.deb ... 740s Unpacking r-cran-abind (1.4-5-2) ... 740s Selecting previously unselected package r-bioc-s4arrays. 740s Preparing to unpack .../307-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 740s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 741s Selecting previously unselected package r-bioc-sparsearray. 741s Preparing to unpack .../308-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 741s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 741s Selecting previously unselected package r-bioc-delayedarray. 741s Preparing to unpack .../309-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 741s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 741s Selecting previously unselected package r-bioc-summarizedexperiment. 741s Preparing to unpack .../310-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 741s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 741s Selecting previously unselected package r-bioc-rhtslib. 741s Preparing to unpack .../311-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 741s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 741s Selecting previously unselected package r-bioc-rsamtools. 741s Preparing to unpack .../312-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 741s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 741s Selecting previously unselected package r-bioc-genomicalignments. 741s Preparing to unpack .../313-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 741s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 741s Selecting previously unselected package r-cran-rjson. 741s Preparing to unpack .../314-r-cran-rjson_0.2.21-1_amd64.deb ... 741s Unpacking r-cran-rjson (0.2.21-1) ... 741s Selecting previously unselected package r-cran-restfulr. 741s Preparing to unpack .../315-r-cran-restfulr_0.0.15-1_amd64.deb ... 741s Unpacking r-cran-restfulr (0.0.15-1) ... 741s Selecting previously unselected package r-bioc-rtracklayer. 741s Preparing to unpack .../316-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 741s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 741s Selecting previously unselected package r-bioc-genomicfeatures. 741s Preparing to unpack .../317-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 741s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 741s Selecting previously unselected package r-bioc-bsgenome. 741s Preparing to unpack .../318-r-bioc-bsgenome_1.70.2-1_all.deb ... 741s Unpacking r-bioc-bsgenome (1.70.2-1) ... 741s Selecting previously unselected package r-bioc-variantannotation. 741s Preparing to unpack .../319-r-bioc-variantannotation_1.48.1-1_amd64.deb ... 741s Unpacking r-bioc-variantannotation (1.48.1-1) ... 741s Selecting previously unselected package r-bioc-protgenerics. 741s Preparing to unpack .../320-r-bioc-protgenerics_1.34.0-1_all.deb ... 741s Unpacking r-bioc-protgenerics (1.34.0-1) ... 741s Selecting previously unselected package r-bioc-ensembldb. 741s Preparing to unpack .../321-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 741s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 741s Selecting previously unselected package r-bioc-biovizbase. 741s Preparing to unpack .../322-r-bioc-biovizbase_1.50.0-1_amd64.deb ... 741s Unpacking r-bioc-biovizbase (1.50.0-1) ... 742s Selecting previously unselected package r-cran-plyr. 742s Preparing to unpack .../323-r-cran-plyr_1.8.9-1_amd64.deb ... 742s Unpacking r-cran-plyr (1.8.9-1) ... 742s Selecting previously unselected package r-cran-reshape2. 742s Preparing to unpack .../324-r-cran-reshape2_1.4.4-2build1_amd64.deb ... 742s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 742s Selecting previously unselected package r-bioc-graph. 742s Preparing to unpack .../325-r-bioc-graph_1.80.0-1_amd64.deb ... 742s Unpacking r-bioc-graph (1.80.0-1) ... 742s Selecting previously unselected package r-bioc-rbgl. 742s Preparing to unpack .../326-r-bioc-rbgl_1.78.0+dfsg-1_amd64.deb ... 742s Unpacking r-bioc-rbgl (1.78.0+dfsg-1) ... 742s Selecting previously unselected package r-bioc-organismdbi. 742s Preparing to unpack .../327-r-bioc-organismdbi_1.44.0+dfsg-1_all.deb ... 742s Unpacking r-bioc-organismdbi (1.44.0+dfsg-1) ... 742s Selecting previously unselected package r-cran-broom. 742s Preparing to unpack .../328-r-cran-broom_1.0.5+dfsg-1_all.deb ... 742s Unpacking r-cran-broom (1.0.5+dfsg-1) ... 742s Selecting previously unselected package r-cran-forcats. 742s Preparing to unpack .../329-r-cran-forcats_1.0.0-1_all.deb ... 742s Unpacking r-cran-forcats (1.0.0-1) ... 742s Selecting previously unselected package r-cran-clipr. 742s Preparing to unpack .../330-r-cran-clipr_0.8.0-1_all.deb ... 742s Unpacking r-cran-clipr (0.8.0-1) ... 742s Selecting previously unselected package r-cran-tzdb. 742s Preparing to unpack .../331-r-cran-tzdb_0.4.0-2_amd64.deb ... 742s Unpacking r-cran-tzdb (0.4.0-2) ... 742s Selecting previously unselected package r-cran-vroom. 742s Preparing to unpack .../332-r-cran-vroom_1.6.5-1_amd64.deb ... 742s Unpacking r-cran-vroom (1.6.5-1) ... 742s Selecting previously unselected package r-cran-readr. 742s Preparing to unpack .../333-r-cran-readr_2.1.5-1_amd64.deb ... 742s Unpacking r-cran-readr (2.1.5-1) ... 742s Selecting previously unselected package r-cran-haven. 742s Preparing to unpack .../334-r-cran-haven_2.5.4-1_amd64.deb ... 742s Unpacking r-cran-haven (2.5.4-1) ... 742s Selecting previously unselected package r-cran-labelled. 742s Preparing to unpack .../335-r-cran-labelled_2.12.0-2_all.deb ... 742s Unpacking r-cran-labelled (2.12.0-2) ... 742s Selecting previously unselected package r-cran-broom.helpers. 742s Preparing to unpack .../336-r-cran-broom.helpers_1.14.0-2_all.deb ... 742s Unpacking r-cran-broom.helpers (1.14.0-2) ... 742s Selecting previously unselected package r-cran-patchwork. 742s Preparing to unpack .../337-r-cran-patchwork_1.2.0-1_all.deb ... 742s Unpacking r-cran-patchwork (1.2.0-1) ... 742s Selecting previously unselected package r-cran-ggstats. 742s Preparing to unpack .../338-r-cran-ggstats_0.5.1-2_all.deb ... 742s Unpacking r-cran-ggstats (0.5.1-2) ... 742s Selecting previously unselected package r-cran-ggally. 742s Preparing to unpack .../339-r-cran-ggally_2.2.1-1_all.deb ... 742s Unpacking r-cran-ggally (2.2.1-1) ... 742s Selecting previously unselected package r-bioc-ggbio. 742s Preparing to unpack .../340-r-bioc-ggbio_1.50.0-1_all.deb ... 742s Unpacking r-bioc-ggbio (1.50.0-1) ... 742s Selecting previously unselected package r-bioc-gviz. 742s Preparing to unpack .../341-r-bioc-gviz_1.46.1+dfsg-1_all.deb ... 742s Unpacking r-bioc-gviz (1.46.1+dfsg-1) ... 743s Selecting previously unselected package r-cran-brio. 743s Preparing to unpack .../342-r-cran-brio_1.1.4-1_amd64.deb ... 743s Unpacking r-cran-brio (1.1.4-1) ... 743s Selecting previously unselected package r-cran-ps. 743s Preparing to unpack .../343-r-cran-ps_1.7.6-1_amd64.deb ... 743s Unpacking r-cran-ps (1.7.6-1) ... 743s Selecting previously unselected package r-cran-processx. 743s Preparing to unpack .../344-r-cran-processx_3.8.3-1_amd64.deb ... 743s Unpacking r-cran-processx (3.8.3-1) ... 743s Selecting previously unselected package r-cran-callr. 743s Preparing to unpack .../345-r-cran-callr_3.7.3-2_all.deb ... 743s Unpacking r-cran-callr (3.7.3-2) ... 743s Selecting previously unselected package r-cran-desc. 743s Preparing to unpack .../346-r-cran-desc_1.4.3-1_all.deb ... 743s Unpacking r-cran-desc (1.4.3-1) ... 743s Selecting previously unselected package r-cran-diffobj. 743s Preparing to unpack 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(4.0.5-1) ... 749s Setting up r-cran-xtable (1:1.8-4-2) ... 749s Setting up r-cran-cli (3.6.2-1) ... 749s Setting up gfortran (4:13.2.0-7ubuntu1) ... 749s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 749s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 749s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 749s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 749s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 749s Setting up r-cran-bitops (1.0-7-1) ... 749s Setting up r-bioc-biocversion (3.18.1-1) ... 749s Setting up r-cran-rprojroot (2.0.4-1) ... 749s Setting up r-cran-bit64 (4.0.5-1) ... 749s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 749s Setting up 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... 749s Setting up r-cran-later (1.3.2+dfsg-1) ... 749s Setting up r-cran-matrix (1.6-5-1) ... 749s Setting up r-cran-tinytex (0.49-1) ... 749s Setting up r-cran-knitr (1.45+dfsg-1) ... 749s Setting up r-cran-mgcv (1.9-1-1) ... 749s Setting up g++ (4:13.2.0-7ubuntu1) ... 749s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 749s Setting up r-cran-cachem (1.0.8-1) ... 749s Setting up build-essential (12.10ubuntu1) ... 749s Setting up r-bioc-iranges (2.36.0-1) ... 749s Setting up r-cran-rjson (0.2.21-1) ... 749s Setting up r-cran-tzdb (0.4.0-2) ... 749s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 749s Setting up r-cran-restfulr (0.0.15-1) ... 749s Setting up r-cran-vctrs (0.6.5-1) ... 749s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 749s Setting up r-bioc-graph (1.80.0-1) ... 749s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 749s Setting up r-cran-ellipsis (0.3.2-2) ... 749s Setting up r-bioc-rbgl (1.78.0+dfsg-1) ... 749s Setting up r-cran-openssl 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Setting up r-cran-hms (1.1.3-1) ... 749s Setting up r-cran-scales (1.3.0-1) ... 749s Setting up r-cran-memoise (2.0.1-1) ... 749s Setting up r-cran-promises (1.2.1+dfsg-1) ... 749s Setting up r-cran-purrr (1.0.2-1) ... 749s Setting up r-cran-blob (1.2.4-1) ... 749s Setting up r-cran-htmltools (0.5.7-1) ... 749s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 749s Setting up r-bioc-xvector (0.42.0-1) ... 749s Setting up r-cran-pkgbuild (1.4.3-1) ... 749s Setting up r-cran-sass (0.4.8+dfsg-1) ... 749s Setting up r-cran-dplyr (1.1.4-1) ... 749s Setting up r-cran-rsqlite (2.3.4-1) ... 749s Setting up r-cran-progress (1.2.3-1) ... 749s Setting up r-cran-pkgload (1.3.4-1) ... 749s Setting up r-cran-vroom (1.6.5-1) ... 749s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 749s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 749s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 749s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 749s Setting up r-cran-rematch2 (2.1.2-2build1) ... 749s Setting up r-cran-rpart (4.1.23-1) ... 749s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 749s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 749s Setting up r-cran-fontawesome (0.5.2-1) ... 749s Setting up r-cran-latticeextra (0.6-30-1) ... 749s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 749s Setting up r-cran-viridis (0.6.5-1) ... 749s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 749s Setting up r-cran-readr (2.1.5-1) ... 749s Setting up r-cran-waldo (0.5.2-1build1) ... 749s Setting up r-cran-tidyr (1.3.1-1) ... 749s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 749s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 749s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 749s Setting up r-cran-patchwork (1.2.0-1) ... 749s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 749s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 749s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 749s Setting up r-cran-haven (2.5.4-1) ... 749s Setting up r-bioc-annotationdbi (1.64.1-1) ... 749s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 749s Setting up r-cran-testthat (3.2.1-1) ... 749s Setting up r-cran-broom (1.0.5+dfsg-1) ... 749s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 749s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 749s Setting up r-cran-labelled (2.12.0-2) ... 749s Setting up r-bioc-genomicalignments (1.38.2-1) ... 749s Setting up r-cran-bookdown (0.37+dfsg-1) ... 749s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 749s Setting up r-bioc-rtracklayer (1.62.0-1) ... 749s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 749s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 749s Setting up r-cran-broom.helpers (1.14.0-2) ... 749s Setting up r-bioc-bsgenome (1.70.2-1) ... 749s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 749s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 749s Setting up r-cran-dt (0.31+dfsg-1) ... 749s Setting up r-bioc-organismdbi (1.44.0+dfsg-1) ... 749s Setting up r-cran-ggstats (0.5.1-2) ... 749s Setting up r-bioc-variantannotation (1.48.1-1) ... 749s Setting up r-cran-ggally (2.2.1-1) ... 749s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 749s Setting up r-cran-htmltable (2.4.2-1) ... 749s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 749s Setting up r-cran-hmisc (5.1-1-1) ... 749s Setting up r-bioc-biovizbase (1.50.0-1) ... 749s Setting up r-bioc-ggbio (1.50.0-1) ... 749s Setting up r-bioc-gviz (1.46.1+dfsg-1) ... 749s Processing triggers for libc-bin (2.39-0ubuntu2) ... 749s Processing triggers for man-db (2.12.0-3) ... 750s Processing triggers for install-info (7.1-3) ... 750s Processing triggers for tex-common (6.18) ... 751s Running updmap-sys. This may take some time... done. 751s Running mktexlsr /var/lib/texmf ... done. 751s Building format(s) --all. 782s This may take some time... done. 794s Reading package lists... 794s Building dependency tree... 794s Reading state information... 795s Starting pkgProblemResolver with broken count: 0 795s Starting 2 pkgProblemResolver with broken count: 0 795s Done 795s The following NEW packages will be installed: 795s autopkgtest-satdep 795s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 795s Need to get 0 B/696 B of archives. 795s After this operation, 0 B of additional disk space will be used. 795s Get:1 /tmp/autopkgtest.4S0NB3/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 795s Selecting previously unselected package autopkgtest-satdep. 795s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 128221 files and directories currently installed.) 795s Preparing to unpack .../2-autopkgtest-satdep.deb ... 795s Unpacking autopkgtest-satdep (0) ... 795s Setting up autopkgtest-satdep (0) ... 797s (Reading database ... 128221 files and directories currently installed.) 797s Removing autopkgtest-satdep (0) ... 799s autopkgtest [02:39:08]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 799s autopkgtest [02:39:08]: test pkg-r-autopkgtest: [----------------------- 799s Test: Try to load the R library ensembldb 799s 799s R version 4.3.2 (2023-10-31) -- "Eye Holes" 799s Copyright (C) 2023 The R Foundation for Statistical Computing 799s Platform: x86_64-pc-linux-gnu (64-bit) 799s 799s R is free software and comes with ABSOLUTELY NO WARRANTY. 799s You are welcome to redistribute it under certain conditions. 799s Type 'license()' or 'licence()' for distribution details. 799s 799s R is a collaborative project with many contributors. 799s Type 'contributors()' for more information and 799s 'citation()' on how to cite R or R packages in publications. 799s 799s Type 'demo()' for some demos, 'help()' for on-line help, or 799s 'help.start()' for an HTML browser interface to help. 799s Type 'q()' to quit R. 799s 799s > library('ensembldb') 799s Loading required package: BiocGenerics 799s 799s Attaching package: ‘BiocGenerics’ 799s 799s The following objects are masked from ‘package:stats’: 799s 799s IQR, mad, sd, var, xtabs 799s 799s The following objects are masked from ‘package:base’: 799s 799s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 799s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 799s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 799s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 799s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 799s table, tapply, union, unique, unsplit, which.max, which.min 799s 799s Loading required package: GenomicRanges 799s Loading required package: stats4 799s Loading required package: S4Vectors 800s 800s Attaching package: ‘S4Vectors’ 800s 800s The following object is masked from ‘package:utils’: 800s 800s findMatches 800s 800s The following objects are masked from ‘package:base’: 800s 800s expand.grid, I, unname 800s 800s Loading required package: IRanges 800s Loading required package: GenomeInfoDb 801s Loading required package: GenomicFeatures 801s Loading required package: AnnotationDbi 801s Loading required package: Biobase 801s Welcome to Bioconductor 801s 801s Vignettes contain introductory material; view with 801s 'browseVignettes()'. To cite Bioconductor, see 801s 'citation("Biobase")', and for packages 'citation("pkgname")'. 801s 809s Loading required package: AnnotationFilter 809s 809s Attaching package: 'ensembldb' 809s 809s The following object is masked from 'package:stats': 809s 809s filter 809s 809s > 809s > 809s Other tests are currently unsupported! 809s They will be progressively added. 809s autopkgtest [02:39:18]: test pkg-r-autopkgtest: -----------------------] 810s pkg-r-autopkgtest PASS (superficial) 810s autopkgtest [02:39:19]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 810s autopkgtest [02:39:19]: @@@@@@@@@@@@@@@@@@@@ summary 810s pkg-r-autopkgtest PASS (superficial) 822s Creating nova instance adt-noble-i386-r-bioc-ensembldb-20240322-022549-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...