0s autopkgtest [13:00:33]: starting date and time: 2024-03-21 13:00:33+0000 0s autopkgtest [13:00:33]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [13:00:33]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bv2vklsl/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-bioc-rsamtools --apt-upgrade r-bioc-ensembldb --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-30.secgroup --name adt-noble-i386-r-bioc-ensembldb-20240321-130033-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 214s autopkgtest [13:04:07]: testbed dpkg architecture: amd64 214s autopkgtest [13:04:07]: testbed apt version: 2.7.12 214s autopkgtest [13:04:07]: test architecture: i386 214s autopkgtest [13:04:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 214s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 215s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 215s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 215s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 215s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3774 kB] 215s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [696 kB] 215s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [460 kB] 215s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 215s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 215s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 215s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 215s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1273 kB] 215s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4238 kB] 215s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 215s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 215s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 215s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 218s Fetched 11.3 MB in 2s (7444 kB/s) 218s Reading package lists... 220s Reading package lists... 220s Building dependency tree... 220s Reading state information... 221s Calculating upgrade... 221s The following packages will be upgraded: 221s debianutils linux-firmware 221s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 221s Need to get 476 MB of archives. 221s After this operation, 5724 kB of additional disk space will be used. 221s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.17 [89.8 kB] 221s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-firmware amd64 20240318.git3b128b60-0ubuntu1 [475 MB] 226s Fetched 476 MB in 4s (126 MB/s) 226s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 226s Preparing to unpack .../debianutils_5.17_amd64.deb ... 226s Unpacking debianutils (5.17) over (5.16) ... 226s Setting up debianutils (5.17) ... 226s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 226s Preparing to unpack .../linux-firmware_20240318.git3b128b60-0ubuntu1_amd64.deb ... 226s Unpacking linux-firmware (20240318.git3b128b60-0ubuntu1) over (20240202.git36777504-0ubuntu1) ... 229s Setting up linux-firmware (20240318.git3b128b60-0ubuntu1) ... 229s Processing triggers for man-db (2.12.0-3) ... 230s Processing triggers for initramfs-tools (0.142ubuntu20) ... 230s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 230s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 238s Reading package lists... 238s Building dependency tree... 238s Reading state information... 239s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 239s sh: Attempting to set up Debian/Ubuntu apt sources automatically 239s sh: Distribution appears to be Ubuntu 240s Reading package lists... 240s Building dependency tree... 240s Reading state information... 241s eatmydata is already the newest version (131-1). 241s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 241s Reading package lists... 241s Building dependency tree... 241s Reading state information... 241s dbus is already the newest version (1.14.10-4ubuntu1). 241s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 241s Reading package lists... 242s Building dependency tree... 242s Reading state information... 242s rng-tools-debian is already the newest version (2.4). 242s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 242s Reading package lists... 242s Building dependency tree... 242s Reading state information... 242s The following packages will be REMOVED: 242s cloud-init* python3-configobj* python3-debconf* 243s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 243s After this operation, 3252 kB disk space will be freed. 243s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 243s Removing cloud-init (24.1.1-0ubuntu1) ... 243s Removing python3-configobj (5.0.8-3) ... 243s Removing python3-debconf (1.5.86) ... 243s Processing triggers for man-db (2.12.0-3) ... 244s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71476 files and directories currently installed.) 244s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 244s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 244s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 244s invoke-rc.d: policy-rc.d denied execution of try-restart. 245s Reading package lists... 245s Building dependency tree... 245s Reading state information... 245s linux-generic is already the newest version (6.8.0-11.11+1). 245s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 245s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 245s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 245s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 247s Reading package lists... 247s Reading package lists... 248s Building dependency tree... 248s Reading state information... 248s Calculating upgrade... 248s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 248s Reading package lists... 248s Building dependency tree... 248s Reading state information... 249s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 249s autopkgtest [13:04:42]: rebooting testbed after setup commands that affected boot 444s autopkgtest [13:07:57]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 445s autopkgtest [13:07:58]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-ensembldb 446s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ensembldb 2.26.0+dfsg-1 (dsc) [2438 B] 446s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ensembldb 2.26.0+dfsg-1 (tar) [1110 kB] 446s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ensembldb 2.26.0+dfsg-1 (diff) [6200 B] 446s gpgv: Signature made Fri Dec 1 04:54:01 2023 UTC 446s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 446s gpgv: issuer "plessy@debian.org" 446s gpgv: Can't check signature: No public key 446s dpkg-source: warning: cannot verify inline signature for ./r-bioc-ensembldb_2.26.0+dfsg-1.dsc: no acceptable signature found 446s autopkgtest [13:07:59]: testing package r-bioc-ensembldb version 2.26.0+dfsg-1 446s autopkgtest [13:07:59]: build not needed 448s autopkgtest [13:08:01]: test pkg-r-autopkgtest: preparing testbed 454s Note, using file '/tmp/autopkgtest.3s12l0/1-autopkgtest-satdep.dsc' to get the build dependencies 454s Reading package lists... 454s Building dependency tree... 454s Reading state information... 454s Starting pkgProblemResolver with broken count: 0 454s Starting 2 pkgProblemResolver with broken count: 0 454s Done 455s The following NEW packages will be installed: 455s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 455s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 455s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 455s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 455s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 455s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 455s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 455s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 455s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 455s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 455s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 455s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 455s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 455s libjs-highlight.js libjs-jquery libjs-jquery-datatables 455s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 455s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 455s libjs-popper.js libjs-prettify libjs-sifter.js 455s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 455s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 455s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 455s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 455s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 455s libpotrace0 libptexenc1 libquadmath0 libreadline-dev libsharpyuv0 libsm6 455s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 455s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 455s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 455s libxss1 libxt6 libzzip-0-13 linux-libc-dev node-bootstrap-sass 455s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 455s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 455s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 455s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 455s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart 455s r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray 455s r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 455s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 455s r-bioc-ggbio r-bioc-graph r-bioc-gviz r-bioc-interactivedisplaybase 455s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-organismdbi 455s r-bioc-protgenerics r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools 455s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 455s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 455s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 455s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 455s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-broom 455s r-cran-broom.helpers r-cran-bslib r-cran-cachem r-cran-callr 455s r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr r-cran-cluster 455s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 455s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-dbi 455s r-cran-dbplyr r-cran-deldir r-cran-desc r-cran-dichromat r-cran-diffobj 455s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 455s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 455s r-cran-forcats r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 455s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggally 455s r-cran-ggplot2 r-cran-ggstats r-cran-glue r-cran-gridextra r-cran-gtable 455s r-cran-haven r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable 455s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-interp 455s r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr 455s r-cran-labeling r-cran-labelled r-cran-lambda.r r-cran-later r-cran-lattice 455s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 455s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 455s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet 455s r-cran-openssl r-cran-patchwork r-cran-pillar r-cran-pkgbuild 455s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 455s r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 455s r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs 455s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl r-cran-readr 455s r-cran-rematch2 r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang 455s r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite 455s r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 455s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 455s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 455s r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite 455s r-cran-vroom r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 455s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 455s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 455s xdg-utils zip zlib1g-dev 455s 0 upgraded, 355 newly installed, 0 to remove and 0 not upgraded. 455s Need to get 508 MB of archives. 455s After this operation, 1482 MB of additional disk space will be used. 455s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 455s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 455s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 455s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 455s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 455s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 455s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 455s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 455s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 455s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 455s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 455s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 455s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 455s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 455s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 455s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 455s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 455s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 455s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 455s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 455s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 455s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 455s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 455s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 455s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 455s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 455s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 455s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 455s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 455s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 455s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 455s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 455s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 455s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 455s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 455s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 455s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 455s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 455s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 455s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 455s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 455s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 455s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 455s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 455s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 455s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 455s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 456s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 456s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 456s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 456s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 456s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 456s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 456s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 456s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 456s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 456s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 456s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 456s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 456s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 456s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 456s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 456s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 456s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 456s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 456s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 456s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 456s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 456s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 456s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 456s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 456s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 456s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 456s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 456s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 456s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 456s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 456s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 456s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 456s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 456s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 456s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 456s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 456s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 456s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 456s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 456s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 456s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 456s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 456s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 456s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 456s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 456s Get:93 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 456s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 456s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 456s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 456s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 456s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 456s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 456s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 456s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 456s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 456s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 456s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 456s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 456s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 456s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 456s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 456s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 456s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 456s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 456s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 456s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 456s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 456s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 456s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 456s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 456s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 456s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 456s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 456s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 456s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 456s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 456s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 456s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 456s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 456s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 456s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 456s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 456s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 456s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 456s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 456s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 456s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 456s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 456s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 456s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 456s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 456s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 456s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 456s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 456s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 456s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 456s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 456s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 456s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 456s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 456s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 456s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 456s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 456s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 456s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 456s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 456s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 456s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 456s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 456s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 456s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 456s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 456s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 456s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 456s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 456s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 456s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 456s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 456s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 456s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 456s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 456s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 456s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 456s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 456s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 456s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 456s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 456s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 456s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 456s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 456s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 456s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 456s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 456s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 456s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 456s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 457s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 457s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 457s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 457s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 457s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 457s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 457s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 457s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 457s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 457s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 457s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 457s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 457s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 457s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 457s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 457s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 457s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 457s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 457s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 457s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 457s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 457s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 457s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 457s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 457s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 457s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 457s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 457s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 457s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 457s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 457s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 457s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 457s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 457s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 457s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 457s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 457s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 457s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 457s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 457s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 457s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 457s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 457s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 457s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 457s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 457s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 457s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 457s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 457s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 457s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 457s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 457s Get:235 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 457s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 457s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 457s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 457s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 457s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 457s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 457s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dt all 0.31+dfsg-1 [265 kB] 457s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 457s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 457s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 457s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 457s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 457s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 457s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 457s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 457s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 457s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 457s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 457s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 457s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 457s Get:256 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 457s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 457s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 457s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 457s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 458s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 458s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 458s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 458s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 458s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 458s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 458s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 458s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 458s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 458s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 458s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 458s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 458s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 458s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 458s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 458s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 458s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 458s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 458s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 458s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 458s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 458s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 458s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cluster amd64 2.1.6-1 [554 kB] 458s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 458s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rpart amd64 4.1.23-1 [661 kB] 458s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nnet amd64 7.3-19-2 [112 kB] 458s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-foreign amd64 0.8.86-1 [242 kB] 458s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 458s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-data.table amd64 1.14.10+dfsg-1 [1837 kB] 458s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-backports amd64 1.4.1-1 [101 kB] 458s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-checkmate amd64 2.3.1-1 [713 kB] 458s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rstudioapi all 0.15.0-1 [277 kB] 458s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltable all 2.4.2-1 [381 kB] 458s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 458s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 458s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-chron amd64 2.3-61-2 [186 kB] 458s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 458s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-deldir amd64 2.0-4-1 [270 kB] 458s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppeigen amd64 0.3.3.9.4-1 [1189 kB] 458s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 458s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 458s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-acepack amd64 1.4.2-1 [61.3 kB] 458s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hmisc amd64 5.1-1-1 [3491 kB] 458s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 458s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 458s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 458s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 458s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 458s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 458s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 458s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 458s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 458s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 458s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 458s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 458s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 458s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 458s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 458s Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 458s Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-variantannotation amd64 1.48.1-1 [3527 kB] 458s Get:321 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 458s Get:322 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 458s Get:323 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biovizbase amd64 1.50.0-1 [2665 kB] 458s Get:324 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 458s Get:325 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 458s Get:326 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-graph amd64 1.80.0-1 [1289 kB] 458s Get:327 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rbgl amd64 1.78.0+dfsg-1 [551 kB] 458s Get:328 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-organismdbi all 1.44.0+dfsg-1 [456 kB] 458s Get:329 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-broom all 1.0.5+dfsg-1 [1729 kB] 458s Get:330 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-forcats all 1.0.0-1 [369 kB] 458s Get:331 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-clipr all 0.8.0-1 [53.5 kB] 458s Get:332 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] 458s Get:333 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vroom amd64 1.6.5-1 [848 kB] 458s Get:334 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-readr amd64 2.1.5-1 [766 kB] 458s Get:335 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-haven amd64 2.5.4-1 [346 kB] 459s Get:336 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labelled all 2.12.0-2 [312 kB] 459s Get:337 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-broom.helpers all 1.14.0-2 [557 kB] 459s Get:338 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-patchwork all 1.2.0-1 [3161 kB] 459s Get:339 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggstats all 0.5.1-2 [839 kB] 459s Get:340 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggally all 2.2.1-1 [2022 kB] 459s Get:341 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ggbio all 1.50.0-1 [2939 kB] 459s Get:342 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-gviz all 1.46.1+dfsg-1 [4855 kB] 459s Get:343 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 459s Get:344 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 459s Get:345 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 459s Get:346 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 459s Get:347 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 459s Get:348 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 459s Get:349 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 459s Get:350 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 459s Get:351 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 459s Get:352 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 459s Get:353 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 459s Get:354 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 459s Get:355 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 460s Preconfiguring packages ... 460s Fetched 508 MB in 4s (131 MB/s) 460s Selecting previously unselected package libc-dev-bin. 460s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71421 files and directories currently installed.) 460s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 460s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 460s Selecting previously unselected package linux-libc-dev:amd64. 460s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 460s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 460s Selecting previously unselected package libcrypt-dev:amd64. 460s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 460s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 460s Selecting previously unselected package libtirpc-dev:amd64. 460s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 460s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 460s Selecting previously unselected package libnsl-dev:amd64. 460s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 460s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 460s Selecting previously unselected package rpcsvc-proto. 460s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 460s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 460s Selecting previously unselected package libc6-dev:amd64. 460s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 460s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 460s Selecting previously unselected package libisl23:amd64. 460s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 460s Unpacking libisl23:amd64 (0.26-3) ... 460s Selecting previously unselected package libmpc3:amd64. 460s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 460s Unpacking libmpc3:amd64 (1.3.1-1) ... 460s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 460s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 460s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 461s Selecting previously unselected package cpp-13. 461s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 461s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 461s Selecting previously unselected package cpp-x86-64-linux-gnu. 461s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 461s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 461s Selecting previously unselected package cpp. 461s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 461s Unpacking cpp (4:13.2.0-7ubuntu1) ... 461s Selecting previously unselected package libcc1-0:amd64. 461s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 461s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 461s Selecting previously unselected package libgomp1:amd64. 461s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 461s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 461s Selecting previously unselected package libitm1:amd64. 461s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 461s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 461s Selecting previously unselected package libatomic1:amd64. 461s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 461s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 461s Selecting previously unselected package libasan8:amd64. 461s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 461s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 461s Selecting previously unselected package liblsan0:amd64. 461s 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.../033-build-essential_12.10ubuntu1_amd64.deb ... 462s Unpacking build-essential (12.10ubuntu1) ... 462s Selecting previously unselected package dctrl-tools. 462s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 462s Unpacking dctrl-tools (2.24-3build2) ... 462s Selecting previously unselected package fonts-dejavu-mono. 462s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 462s Unpacking fonts-dejavu-mono (2.37-8) ... 462s Selecting previously unselected package fonts-dejavu-core. 462s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 462s Unpacking fonts-dejavu-core (2.37-8) ... 463s Selecting previously unselected package fontconfig-config. 463s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 463s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 463s Selecting previously unselected package libfontconfig1:amd64. 463s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 463s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 463s Selecting previously unselected package fontconfig. 463s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 463s Unpacking fontconfig (2.15.0-1ubuntu1) ... 463s Selecting previously unselected package fonts-font-awesome. 463s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 463s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 463s Selecting previously unselected package fonts-glyphicons-halflings. 463s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 463s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 463s Selecting previously unselected package fonts-lmodern. 463s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 463s Unpacking fonts-lmodern (2.005-1) ... 463s Selecting previously unselected package fonts-mathjax. 463s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 463s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 463s Selecting previously unselected package libgfortran5:amd64. 463s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 463s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 463s Selecting previously unselected package libgfortran-13-dev:amd64. 463s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 463s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 463s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 463s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 463s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 464s Selecting previously unselected package gfortran-13. 464s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 464s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 464s Selecting previously unselected package gfortran-x86-64-linux-gnu. 464s Preparing to unpack .../048-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 464s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 464s Selecting previously unselected package gfortran. 464s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 464s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 464s Selecting previously unselected package icu-devtools. 464s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_amd64.deb ... 464s Unpacking icu-devtools (74.2-1ubuntu1) ... 464s Selecting previously unselected package javascript-common. 464s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 464s Unpacking javascript-common (11+nmu1) ... 464s Selecting previously unselected package libio-string-perl. 464s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 464s Unpacking libio-string-perl (1.08-4) ... 464s Selecting previously unselected package liblatex-tounicode-perl. 464s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 464s Unpacking liblatex-tounicode-perl (0.54-2) ... 464s Selecting previously unselected package libbibtex-parser-perl. 464s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 464s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 464s Selecting previously unselected package libblas3:amd64. 464s Preparing to unpack .../055-libblas3_3.12.0-3_amd64.deb ... 464s Unpacking libblas3:amd64 (3.12.0-3) ... 464s Selecting previously unselected package libblas-dev:amd64. 464s Preparing to unpack .../056-libblas-dev_3.12.0-3_amd64.deb ... 464s Unpacking libblas-dev:amd64 (3.12.0-3) ... 464s Selecting previously unselected package libboost1.83-dev:amd64. 464s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 464s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 466s Selecting previously unselected package libboost-dev:amd64. 466s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 466s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ... 466s Selecting previously unselected package libbz2-dev:amd64. 466s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 466s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 466s Selecting previously unselected package libpixman-1-0:amd64. 466s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_amd64.deb ... 466s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 466s Selecting previously unselected package libxcb-render0:amd64. 466s Preparing to unpack .../061-libxcb-render0_1.15-1_amd64.deb ... 466s Unpacking libxcb-render0:amd64 (1.15-1) ... 466s Selecting previously unselected package libxcb-shm0:amd64. 466s Preparing to unpack .../062-libxcb-shm0_1.15-1_amd64.deb ... 466s Unpacking libxcb-shm0:amd64 (1.15-1) ... 466s Selecting previously unselected package libxrender1:amd64. 466s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 466s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 466s Selecting previously unselected package libcairo2:amd64. 466s Preparing to unpack .../064-libcairo2_1.18.0-1_amd64.deb ... 466s Unpacking libcairo2:amd64 (1.18.0-1) ... 466s Selecting previously unselected package libdatrie1:amd64. 466s Preparing to unpack .../065-libdatrie1_0.2.13-3_amd64.deb ... 466s Unpacking libdatrie1:amd64 (0.2.13-3) ... 466s Selecting previously unselected package libdeflate0:amd64. 466s Preparing to unpack .../066-libdeflate0_1.19-1_amd64.deb ... 466s Unpacking libdeflate0:amd64 (1.19-1) ... 466s Selecting previously unselected package libgraphite2-3:amd64. 466s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_amd64.deb ... 466s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 467s Selecting previously unselected package libharfbuzz0b:amd64. 467s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_amd64.deb ... 467s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 467s Selecting previously unselected package x11-common. 467s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 467s Unpacking x11-common (1:7.7+23ubuntu2) ... 467s Selecting previously unselected package libice6:amd64. 467s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_amd64.deb ... 467s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 467s Selecting previously unselected package libicu-dev:amd64. 467s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_amd64.deb ... 467s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 467s Selecting previously unselected package libjpeg-turbo8:amd64. 467s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 467s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 467s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 467s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 467s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 467s Selecting previously unselected package libjpeg8:amd64. 467s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_amd64.deb ... 467s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 467s Selecting previously unselected package libjpeg8-dev:amd64. 467s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 467s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 467s Selecting previously unselected package libjpeg-dev:amd64. 467s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 467s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 467s Selecting previously unselected package libjs-bootstrap. 467s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 467s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 467s Selecting previously unselected package libjs-popper.js. 467s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 467s Unpacking libjs-popper.js (1.16.1+ds-6) ... 467s Selecting previously unselected package libjs-bootstrap4. 467s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 467s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 467s Selecting previously unselected package libjs-d3. 467s Preparing to unpack .../080-libjs-d3_3.5.17-4_all.deb ... 467s Unpacking libjs-d3 (3.5.17-4) ... 467s Selecting previously unselected package libjs-es5-shim. 467s Preparing to unpack .../081-libjs-es5-shim_4.6.7-2_all.deb ... 467s Unpacking libjs-es5-shim (4.6.7-2) ... 467s Selecting previously unselected package libjs-highlight.js. 467s Preparing to unpack .../082-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 467s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 467s Selecting previously unselected package libjs-jquery. 467s Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 467s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 467s Selecting previously unselected package libjs-jquery-datatables. 467s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 467s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 468s Selecting previously unselected package libjs-jquery-datatables-extensions. 468s Preparing to unpack .../085-libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-5_all.deb ... 468s Unpacking libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 468s Selecting previously unselected package libjs-sifter.js. 468s Preparing to unpack .../086-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 468s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 468s Selecting previously unselected package libjs-microplugin.js. 468s Preparing to unpack .../087-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 468s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 468s Selecting previously unselected package libjs-jquery-selectize.js. 468s Preparing to unpack .../088-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 468s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 468s Selecting previously unselected package libjs-jquery-ui. 468s Preparing to unpack .../089-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 468s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 468s Selecting previously unselected package libjs-json. 468s Preparing to unpack .../090-libjs-json_0~20221030+~1.0.8-1_all.deb ... 468s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 468s Selecting previously unselected package libjs-lunr. 468s Preparing to unpack .../091-libjs-lunr_2.3.9~dfsg-2_all.deb ... 468s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 468s Selecting previously unselected package libjs-prettify. 468s Preparing to unpack .../092-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 468s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 468s Selecting previously unselected package libkpathsea6:amd64. 468s Preparing to unpack .../093-libkpathsea6_2023.20230311.66589-9_amd64.deb ... 468s Unpacking libkpathsea6:amd64 (2023.20230311.66589-9) ... 468s Selecting previously unselected package liblapack3:amd64. 468s Preparing to unpack .../094-liblapack3_3.12.0-3_amd64.deb ... 468s Unpacking liblapack3:amd64 (3.12.0-3) ... 468s Selecting previously unselected package liblapack-dev:amd64. 468s Preparing to unpack .../095-liblapack-dev_3.12.0-3_amd64.deb ... 468s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 468s Selecting previously unselected package liblerc4:amd64. 468s Preparing to unpack .../096-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 468s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 468s Selecting previously unselected package liblua5.4-0:amd64. 468s Preparing to unpack .../097-liblua5.4-0_5.4.6-3_amd64.deb ... 468s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 468s Selecting previously unselected package libncurses-dev:amd64. 468s Preparing to unpack .../098-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 468s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 468s Selecting previously unselected package libthai-data. 468s Preparing to unpack .../099-libthai-data_0.1.29-2_all.deb ... 468s Unpacking libthai-data (0.1.29-2) ... 468s Selecting previously unselected package libthai0:amd64. 468s Preparing to unpack .../100-libthai0_0.1.29-2_amd64.deb ... 468s Unpacking libthai0:amd64 (0.1.29-2) ... 468s Selecting previously unselected package libpango-1.0-0:amd64. 468s Preparing to unpack .../101-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 468s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 468s Selecting previously unselected package libpangoft2-1.0-0:amd64. 468s Preparing to unpack .../102-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 468s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 468s Selecting previously unselected package libpangocairo-1.0-0:amd64. 468s Preparing to unpack .../103-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 468s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 468s Selecting previously unselected package libpaper1:amd64. 468s Preparing to unpack .../104-libpaper1_1.1.29_amd64.deb ... 468s Unpacking libpaper1:amd64 (1.1.29) ... 468s Selecting previously unselected package libpaper-utils. 468s Preparing to unpack .../105-libpaper-utils_1.1.29_amd64.deb ... 468s Unpacking libpaper-utils (1.1.29) ... 468s Selecting previously unselected package libpcre2-16-0:amd64. 468s Preparing to unpack .../106-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 468s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 468s Selecting previously unselected package libpcre2-32-0:amd64. 469s Preparing to unpack .../107-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 469s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 469s Selecting previously unselected package libpcre2-posix3:amd64. 469s Preparing to unpack .../108-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 469s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 469s Selecting previously unselected package libpcre2-dev:amd64. 469s Preparing to unpack .../109-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 469s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 469s Selecting previously unselected package libpkgconf3:amd64. 469s Preparing to unpack .../110-libpkgconf3_1.8.1-2_amd64.deb ... 469s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 469s Selecting previously unselected package zlib1g-dev:amd64. 469s Preparing to unpack .../111-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 469s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 469s Selecting previously unselected package libpng-dev:amd64. 469s Preparing to unpack .../112-libpng-dev_1.6.43-1_amd64.deb ... 469s Unpacking libpng-dev:amd64 (1.6.43-1) ... 469s Selecting previously unselected package libpotrace0:amd64. 469s Preparing to unpack .../113-libpotrace0_1.16-2_amd64.deb ... 469s Unpacking libpotrace0:amd64 (1.16-2) ... 469s Selecting previously unselected package libptexenc1:amd64. 469s Preparing to unpack .../114-libptexenc1_2023.20230311.66589-9_amd64.deb ... 469s Unpacking libptexenc1:amd64 (2023.20230311.66589-9) ... 469s Selecting previously unselected package libreadline-dev:amd64. 469s Preparing to unpack .../115-libreadline-dev_8.2-3_amd64.deb ... 469s Unpacking libreadline-dev:amd64 (8.2-3) ... 469s Selecting previously unselected package libsharpyuv0:amd64. 469s Preparing to unpack .../116-libsharpyuv0_1.3.2-0.4_amd64.deb ... 469s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 469s Selecting previously unselected package libsm6:amd64. 469s Preparing to unpack .../117-libsm6_2%3a1.2.3-1build2_amd64.deb ... 469s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 469s Selecting previously unselected package libsynctex2:amd64. 469s Preparing to unpack .../118-libsynctex2_2023.20230311.66589-9_amd64.deb ... 469s Unpacking libsynctex2:amd64 (2023.20230311.66589-9) ... 469s Selecting previously unselected package libtcl8.6:amd64. 469s Preparing to unpack .../119-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 469s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 469s Selecting previously unselected package libteckit0:amd64. 469s Preparing to unpack .../120-libteckit0_2.5.12+ds1-1_amd64.deb ... 469s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 469s Selecting previously unselected package libtexlua53-5:amd64. 469s Preparing to unpack .../121-libtexlua53-5_2023.20230311.66589-9_amd64.deb ... 469s Unpacking libtexlua53-5:amd64 (2023.20230311.66589-9) ... 469s Selecting previously unselected package libjbig0:amd64. 469s Preparing to unpack .../122-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 469s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 469s Selecting previously unselected package libwebp7:amd64. 469s Preparing to unpack .../123-libwebp7_1.3.2-0.4_amd64.deb ... 469s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 469s Selecting previously unselected package libtiff6:amd64. 469s Preparing to unpack .../124-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 469s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 469s Selecting previously unselected package libxft2:amd64. 469s Preparing to unpack .../125-libxft2_2.3.6-1_amd64.deb ... 469s Unpacking libxft2:amd64 (2.3.6-1) ... 469s Selecting previously unselected package libxss1:amd64. 469s Preparing to unpack .../126-libxss1_1%3a1.2.3-1build2_amd64.deb ... 469s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 469s Selecting previously unselected package libtk8.6:amd64. 469s Preparing to unpack .../127-libtk8.6_8.6.13-2_amd64.deb ... 469s Unpacking libtk8.6:amd64 (8.6.13-2) ... 469s Selecting previously unselected package libxt6:amd64. 469s Preparing to unpack .../128-libxt6_1%3a1.2.1-1.1_amd64.deb ... 469s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 469s Selecting previously unselected package libxmu6:amd64. 469s Preparing to unpack .../129-libxmu6_2%3a1.1.3-3_amd64.deb ... 469s Unpacking libxmu6:amd64 (2:1.1.3-3) ... 469s Selecting previously unselected package libxpm4:amd64. 469s Preparing to unpack .../130-libxpm4_1%3a3.5.17-1_amd64.deb ... 469s Unpacking libxpm4:amd64 (1:3.5.17-1) ... 469s Selecting previously unselected package libxaw7:amd64. 469s Preparing to unpack .../131-libxaw7_2%3a1.0.14-1_amd64.deb ... 469s Unpacking libxaw7:amd64 (2:1.0.14-1) ... 469s Selecting previously unselected package libxi6:amd64. 469s Preparing to unpack .../132-libxi6_2%3a1.8.1-1_amd64.deb ... 469s Unpacking libxi6:amd64 (2:1.8.1-1) ... 469s Selecting previously unselected package libzzip-0-13:amd64. 469s Preparing to unpack .../133-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... 469s Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 469s Selecting previously unselected package node-bootstrap-sass. 469s Preparing to unpack .../134-node-bootstrap-sass_3.4.3-2_all.deb ... 469s Unpacking node-bootstrap-sass (3.4.3-2) ... 469s Selecting previously unselected package node-html5shiv. 469s Preparing to unpack .../135-node-html5shiv_3.7.3+dfsg-5_all.deb ... 469s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 469s Selecting previously unselected package node-normalize.css. 469s Preparing to unpack .../136-node-normalize.css_8.0.1-5_all.deb ... 469s Unpacking node-normalize.css (8.0.1-5) ... 469s Selecting previously unselected package pandoc-data. 469s Preparing to unpack .../137-pandoc-data_3.1.3-1_all.deb ... 469s Unpacking pandoc-data (3.1.3-1) ... 470s Selecting previously unselected package pandoc. 470s Preparing to unpack .../138-pandoc_3.1.3+ds-2_amd64.deb ... 470s Unpacking pandoc (3.1.3+ds-2) ... 470s Selecting previously unselected package pkgconf-bin. 470s Preparing to unpack .../139-pkgconf-bin_1.8.1-2_amd64.deb ... 470s Unpacking pkgconf-bin (1.8.1-2) ... 471s Selecting previously unselected package pkgconf:amd64. 471s Preparing to unpack .../140-pkgconf_1.8.1-2_amd64.deb ... 471s Unpacking pkgconf:amd64 (1.8.1-2) ... 471s Selecting previously unselected package pkg-config:amd64. 471s Preparing to unpack .../141-pkg-config_1.8.1-2_amd64.deb ... 471s Unpacking pkg-config:amd64 (1.8.1-2) ... 471s Selecting previously unselected package zip. 471s Preparing to unpack .../142-zip_3.0-13_amd64.deb ... 471s Unpacking zip (3.0-13) ... 471s Selecting previously unselected package unzip. 471s Preparing to unpack .../143-unzip_6.0-28ubuntu3_amd64.deb ... 471s Unpacking unzip (6.0-28ubuntu3) ... 471s Selecting previously unselected package xdg-utils. 471s Preparing to unpack .../144-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 471s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 471s Selecting previously unselected package r-base-core. 471s Preparing to unpack .../145-r-base-core_4.3.2-1build1_amd64.deb ... 471s Unpacking r-base-core (4.3.2-1build1) ... 471s Selecting previously unselected package liblzma-dev:amd64. 471s Preparing to unpack .../146-liblzma-dev_5.4.5-0.3_amd64.deb ... 471s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 471s Selecting previously unselected package r-base-dev. 471s Preparing to unpack .../147-r-base-dev_4.3.2-1build1_all.deb ... 471s Unpacking r-base-dev (4.3.2-1build1) ... 471s Selecting previously unselected package pkg-r-autopkgtest. 471s Preparing to unpack .../148-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 471s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 471s Selecting previously unselected package r-bioc-biocgenerics. 471s Preparing to unpack .../149-r-bioc-biocgenerics_0.48.1-2_all.deb ... 471s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 471s Selecting previously unselected package r-bioc-biobase. 471s Preparing to unpack .../150-r-bioc-biobase_2.62.0-1_amd64.deb ... 471s Unpacking r-bioc-biobase (2.62.0-1) ... 471s Selecting previously unselected package r-bioc-s4vectors. 471s Preparing to unpack .../151-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 471s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 471s Selecting previously unselected package r-bioc-iranges. 471s Preparing to unpack .../152-r-bioc-iranges_2.36.0-1_amd64.deb ... 471s Unpacking r-bioc-iranges (2.36.0-1) ... 471s Selecting previously unselected package r-cran-dbi. 471s Preparing to unpack .../153-r-cran-dbi_1.2.2-1_all.deb ... 471s Unpacking r-cran-dbi (1.2.2-1) ... 471s Selecting previously unselected package r-cran-bit. 471s Preparing to unpack .../154-r-cran-bit_4.0.5-1_amd64.deb ... 471s Unpacking r-cran-bit (4.0.5-1) ... 471s Selecting previously unselected package r-cran-bit64. 471s Preparing to unpack .../155-r-cran-bit64_4.0.5-1_amd64.deb ... 471s Unpacking r-cran-bit64 (4.0.5-1) ... 471s Selecting previously unselected package r-cran-rlang. 471s Preparing to unpack .../156-r-cran-rlang_1.1.3-1_amd64.deb ... 471s Unpacking r-cran-rlang (1.1.3-1) ... 471s Selecting previously unselected package r-cran-cli. 472s Preparing to unpack .../157-r-cran-cli_3.6.2-1_amd64.deb ... 472s Unpacking r-cran-cli (3.6.2-1) ... 472s Selecting previously unselected package r-cran-glue. 472s Preparing to unpack .../158-r-cran-glue_1.7.0-1_amd64.deb ... 472s Unpacking r-cran-glue (1.7.0-1) ... 472s Selecting previously unselected package r-cran-lifecycle. 472s Preparing to unpack .../159-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 472s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 472s Selecting previously unselected package r-cran-vctrs. 472s Preparing to unpack .../160-r-cran-vctrs_0.6.5-1_amd64.deb ... 472s Unpacking r-cran-vctrs (0.6.5-1) ... 472s Selecting previously unselected package r-cran-blob. 472s Preparing to unpack .../161-r-cran-blob_1.2.4-1_all.deb ... 472s Unpacking r-cran-blob (1.2.4-1) ... 472s Selecting previously unselected package r-cran-fastmap. 472s Preparing to unpack .../162-r-cran-fastmap_1.1.1-1_amd64.deb ... 472s Unpacking r-cran-fastmap (1.1.1-1) ... 472s Selecting previously unselected package r-cran-cachem. 472s Preparing to unpack .../163-r-cran-cachem_1.0.8-1_amd64.deb ... 472s Unpacking r-cran-cachem (1.0.8-1) ... 472s Selecting previously unselected package r-cran-memoise. 472s Preparing to unpack .../164-r-cran-memoise_2.0.1-1_all.deb ... 472s Unpacking r-cran-memoise (2.0.1-1) ... 472s Selecting previously unselected package r-cran-pkgconfig. 472s Preparing to unpack .../165-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 472s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 472s Selecting previously unselected package r-cran-plogr. 472s Preparing to unpack .../166-r-cran-plogr_0.2.0-3build1_all.deb ... 472s Unpacking r-cran-plogr (0.2.0-3build1) ... 472s Selecting previously unselected package r-cran-cpp11. 472s Preparing to unpack .../167-r-cran-cpp11_0.4.7-1_all.deb ... 472s Unpacking r-cran-cpp11 (0.4.7-1) ... 472s Selecting previously unselected package r-cran-rsqlite. 472s Preparing to unpack .../168-r-cran-rsqlite_2.3.4-1_amd64.deb ... 472s Unpacking r-cran-rsqlite (2.3.4-1) ... 472s Selecting previously unselected package r-cran-curl. 472s Preparing to unpack .../169-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 472s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 472s Selecting previously unselected package r-cran-jsonlite. 472s Preparing to unpack .../170-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 472s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 472s Selecting previously unselected package r-cran-mime. 472s Preparing to unpack .../171-r-cran-mime_0.12-1_amd64.deb ... 472s Unpacking r-cran-mime (0.12-1) ... 472s Selecting previously unselected package r-cran-sys. 472s Preparing to unpack .../172-r-cran-sys_3.4.2-1_amd64.deb ... 472s Unpacking r-cran-sys (3.4.2-1) ... 472s Selecting previously unselected package r-cran-askpass. 472s Preparing to unpack .../173-r-cran-askpass_1.2.0-1_amd64.deb ... 472s Unpacking r-cran-askpass (1.2.0-1) ... 472s Selecting previously unselected package r-cran-openssl. 472s Preparing to unpack .../174-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 472s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 472s Selecting previously unselected package r-cran-r6. 472s Preparing to unpack .../175-r-cran-r6_2.5.1-1_all.deb ... 472s Unpacking r-cran-r6 (2.5.1-1) ... 472s Selecting previously unselected package r-cran-httr. 472s Preparing to unpack .../176-r-cran-httr_1.4.7+dfsg-1_all.deb ... 472s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 472s Selecting previously unselected package r-cran-png. 472s Preparing to unpack .../177-r-cran-png_0.1-8-1_amd64.deb ... 472s Unpacking r-cran-png (0.1-8-1) ... 472s Selecting previously unselected package r-bioc-zlibbioc. 472s Preparing to unpack .../178-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 472s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 472s Selecting previously unselected package r-bioc-xvector. 472s Preparing to unpack .../179-r-bioc-xvector_0.42.0-1_amd64.deb ... 472s Unpacking r-bioc-xvector (0.42.0-1) ... 472s Selecting previously unselected package r-cran-bitops. 472s Preparing to unpack .../180-r-cran-bitops_1.0-7-1_amd64.deb ... 472s Unpacking r-cran-bitops (1.0-7-1) ... 473s Selecting previously unselected package r-cran-rcurl. 473s Preparing to unpack .../181-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 473s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 473s Selecting previously unselected package r-bioc-genomeinfodbdata. 473s Preparing to unpack .../182-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 473s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 473s Selecting previously unselected package r-bioc-genomeinfodb. 473s Preparing to unpack .../183-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 473s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 473s Selecting previously unselected package r-cran-crayon. 473s Preparing to unpack .../184-r-cran-crayon_1.5.2-1_all.deb ... 473s Unpacking r-cran-crayon (1.5.2-1) ... 473s Selecting previously unselected package r-bioc-biostrings. 473s Preparing to unpack .../185-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 473s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 473s Selecting previously unselected package r-bioc-keggrest. 473s Preparing to unpack .../186-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 473s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 473s Selecting previously unselected package r-bioc-annotationdbi. 473s Preparing to unpack .../187-r-bioc-annotationdbi_1.64.1-1_all.deb ... 473s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 473s Selecting previously unselected package r-bioc-genomicranges. 473s Preparing to unpack .../188-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 473s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 473s Selecting previously unselected package r-cran-lazyeval. 473s Preparing to unpack .../189-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 473s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 473s Selecting previously unselected package r-bioc-annotationfilter. 473s Preparing to unpack .../190-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 473s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 473s Selecting previously unselected package r-cran-generics. 473s Preparing to unpack .../191-r-cran-generics_0.1.3-1_all.deb ... 473s Unpacking r-cran-generics (0.1.3-1) ... 473s Selecting previously unselected package r-cran-magrittr. 473s Preparing to unpack .../192-r-cran-magrittr_2.0.3-1_amd64.deb ... 473s Unpacking r-cran-magrittr (2.0.3-1) ... 473s Selecting previously unselected package r-cran-fansi. 473s Preparing to unpack .../193-r-cran-fansi_1.0.5-1_amd64.deb ... 473s Unpacking r-cran-fansi (1.0.5-1) ... 473s Selecting previously unselected package r-cran-utf8. 475s Preparing to unpack .../194-r-cran-utf8_1.2.4-1_amd64.deb ... 475s Unpacking r-cran-utf8 (1.2.4-1) ... 475s Selecting previously unselected package r-cran-pillar. 475s Preparing to unpack .../195-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 475s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 475s Selecting previously unselected package r-cran-tibble. 475s Preparing to unpack .../196-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 475s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 475s Selecting previously unselected package r-cran-withr. 475s Preparing to unpack .../197-r-cran-withr_2.5.0-1_all.deb ... 475s Unpacking r-cran-withr (2.5.0-1) ... 475s Selecting previously unselected package r-cran-tidyselect. 475s Preparing to unpack .../198-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 475s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 475s Selecting previously unselected package r-cran-dplyr. 475s Preparing to unpack .../199-r-cran-dplyr_1.1.4-1_amd64.deb ... 475s Unpacking r-cran-dplyr (1.1.4-1) ... 475s Selecting previously unselected package r-cran-purrr. 475s Preparing to unpack .../200-r-cran-purrr_1.0.2-1_amd64.deb ... 475s Unpacking r-cran-purrr (1.0.2-1) ... 475s Selecting previously unselected package r-cran-stringi. 475s Preparing to unpack .../201-r-cran-stringi_1.8.3-1_amd64.deb ... 475s Unpacking r-cran-stringi (1.8.3-1) ... 475s Selecting previously unselected package r-cran-stringr. 475s Preparing to unpack .../202-r-cran-stringr_1.5.1-1_all.deb ... 475s Unpacking r-cran-stringr (1.5.1-1) ... 475s Selecting previously unselected package r-cran-tidyr. 475s Preparing to unpack .../203-r-cran-tidyr_1.3.1-1_amd64.deb ... 475s Unpacking r-cran-tidyr (1.3.1-1) ... 475s Selecting previously unselected package r-cran-dbplyr. 475s Preparing to unpack .../204-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 475s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 475s Selecting previously unselected package r-cran-filelock. 475s Preparing to unpack .../205-r-cran-filelock_1.0.3-1_amd64.deb ... 475s Unpacking r-cran-filelock (1.0.3-1) ... 475s Selecting previously unselected package r-bioc-biocfilecache. 475s Preparing to unpack .../206-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 475s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 475s Selecting previously unselected package r-cran-biocmanager. 475s Preparing to unpack .../207-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 475s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 475s Selecting previously unselected package r-bioc-biocversion. 475s Preparing to unpack .../208-r-bioc-biocversion_3.18.1-1_all.deb ... 475s Unpacking r-bioc-biocversion (3.18.1-1) ... 475s Selecting previously unselected package r-cran-rappdirs. 475s Preparing to unpack .../209-r-cran-rappdirs_0.3.3-1_amd64.deb ... 475s Unpacking r-cran-rappdirs (0.3.3-1) ... 475s Selecting previously unselected package r-cran-yaml. 475s Preparing to unpack .../210-r-cran-yaml_2.3.8-1_amd64.deb ... 475s Unpacking r-cran-yaml (2.3.8-1) ... 475s Selecting previously unselected package r-cran-littler. 475s Preparing to unpack .../211-r-cran-littler_0.3.19-1_amd64.deb ... 475s Unpacking r-cran-littler (0.3.19-1) ... 475s Selecting previously unselected package r-cran-pkgkitten. 475s Preparing to unpack .../212-r-cran-pkgkitten_0.2.3-1_all.deb ... 475s Unpacking r-cran-pkgkitten (0.2.3-1) ... 475s Selecting previously unselected package r-cran-rcpp. 475s Preparing to unpack .../213-r-cran-rcpp_1.0.12-1_amd64.deb ... 475s Unpacking r-cran-rcpp (1.0.12-1) ... 475s Selecting previously unselected package r-cran-later. 475s Preparing to unpack .../214-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 475s Unpacking r-cran-later (1.3.2+dfsg-1) ... 475s Selecting previously unselected package r-cran-promises. 475s Preparing to unpack .../215-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 475s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 475s Selecting previously unselected package r-cran-httpuv. 475s Preparing to unpack .../216-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 475s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 475s Selecting previously unselected package r-cran-xtable. 475s Preparing to unpack .../217-r-cran-xtable_1%3a1.8-4-2_all.deb ... 475s Unpacking r-cran-xtable (1:1.8-4-2) ... 475s Selecting previously unselected package r-cran-base64enc. 475s Preparing to unpack .../218-r-cran-base64enc_0.1-3-3_amd64.deb ... 475s Unpacking r-cran-base64enc (0.1-3-3) ... 475s Selecting previously unselected package r-cran-digest. 475s Preparing to unpack .../219-r-cran-digest_0.6.34-1_amd64.deb ... 475s Unpacking r-cran-digest (0.6.34-1) ... 475s Selecting previously unselected package r-cran-ellipsis. 475s Preparing to unpack .../220-r-cran-ellipsis_0.3.2-2_amd64.deb ... 475s Unpacking r-cran-ellipsis (0.3.2-2) ... 475s Selecting previously unselected package r-cran-htmltools. 475s Preparing to unpack .../221-r-cran-htmltools_0.5.7-1_amd64.deb ... 475s Unpacking r-cran-htmltools (0.5.7-1) ... 475s Selecting previously unselected package r-cran-fontawesome. 475s Preparing to unpack .../222-r-cran-fontawesome_0.5.2-1_all.deb ... 475s Unpacking r-cran-fontawesome (0.5.2-1) ... 475s Selecting previously unselected package r-cran-sourcetools. 475s Preparing to unpack .../223-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 475s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 475s Selecting previously unselected package r-cran-commonmark. 475s Preparing to unpack .../224-r-cran-commonmark_1.9.1-1_amd64.deb ... 475s Unpacking r-cran-commonmark (1.9.1-1) ... 475s Selecting previously unselected package r-cran-jquerylib. 475s Preparing to unpack .../225-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 475s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 475s Selecting previously unselected package r-cran-fs. 475s Preparing to unpack .../226-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 475s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 475s Selecting previously unselected package r-cran-sass. 475s Preparing to unpack .../227-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 475s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 475s Selecting previously unselected package r-cran-bslib. 475s Preparing to unpack .../228-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 475s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 475s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 475s Preparing to unpack .../229-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 475s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 475s Selecting previously unselected package r-cran-shiny. 475s Preparing to unpack .../230-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 475s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 475s Selecting previously unselected package r-cran-evaluate. 475s Preparing to unpack .../231-r-cran-evaluate_0.23-1_all.deb ... 475s Unpacking r-cran-evaluate (0.23-1) ... 475s Selecting previously unselected package r-cran-xfun. 475s Preparing to unpack .../232-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 475s Unpacking r-cran-xfun (0.41+dfsg-1) ... 475s Selecting previously unselected package r-cran-highr. 475s Preparing to unpack .../233-r-cran-highr_0.10+dfsg-1_all.deb ... 475s Unpacking r-cran-highr (0.10+dfsg-1) ... 475s Selecting previously unselected package libjs-mathjax. 475s Preparing to unpack .../234-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 475s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 476s Selecting previously unselected package r-cran-knitr. 476s Preparing to unpack .../235-r-cran-knitr_1.45+dfsg-1_all.deb ... 476s Unpacking r-cran-knitr (1.45+dfsg-1) ... 476s Selecting previously unselected package r-cran-tinytex. 476s Preparing to unpack .../236-r-cran-tinytex_0.49-1_all.deb ... 476s Unpacking r-cran-tinytex (0.49-1) ... 476s Selecting previously unselected package libjs-modernizr. 476s Preparing to unpack .../237-libjs-modernizr_2.6.2+ds1-5_all.deb ... 476s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 476s Selecting previously unselected package r-cran-rmarkdown. 476s Preparing to unpack .../238-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 476s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 476s Selecting previously unselected package r-cran-htmlwidgets. 476s Preparing to unpack .../239-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 476s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 476s Selecting previously unselected package r-cran-crosstalk. 476s Preparing to unpack .../240-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 476s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 476s Selecting previously unselected package r-cran-dt. 476s Preparing to unpack .../241-r-cran-dt_0.31+dfsg-1_all.deb ... 476s Unpacking r-cran-dt (0.31+dfsg-1) ... 476s Selecting previously unselected package r-bioc-interactivedisplaybase. 476s Preparing to unpack .../242-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 476s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 476s Selecting previously unselected package r-bioc-annotationhub. 476s Preparing to unpack .../243-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 476s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 476s Selecting previously unselected package r-bioc-biocio. 476s Preparing to unpack .../244-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 476s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 477s Selecting previously unselected package r-cran-formatr. 477s Preparing to unpack .../245-r-cran-formatr_1.14-1_all.deb ... 477s Unpacking r-cran-formatr (1.14-1) ... 477s Selecting previously unselected package r-cran-lambda.r. 477s Preparing to unpack .../246-r-cran-lambda.r_1.2.4-2build1_all.deb ... 477s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 477s Selecting previously unselected package r-cran-futile.options. 477s Preparing to unpack .../247-r-cran-futile.options_1.0.1-3build1_all.deb ... 477s Unpacking r-cran-futile.options (1.0.1-3build1) ... 477s Selecting previously unselected package r-cran-futile.logger. 477s Preparing to unpack .../248-r-cran-futile.logger_1.4.3-4build1_all.deb ... 477s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 477s Selecting previously unselected package r-cran-snow. 477s Preparing to unpack .../249-r-cran-snow_1%3a0.4.4-2_all.deb ... 477s Unpacking r-cran-snow (1:0.4.4-2) ... 477s Selecting previously unselected package r-cran-codetools. 477s Preparing to unpack .../250-r-cran-codetools_0.2-19-1_all.deb ... 477s Unpacking r-cran-codetools (0.2-19-1) ... 477s Selecting previously unselected package r-cran-bh. 477s Preparing to unpack .../251-r-cran-bh_1.84.0-1_all.deb ... 477s Unpacking r-cran-bh (1.84.0-1) ... 477s Selecting previously unselected package r-bioc-biocparallel. 477s Preparing to unpack .../252-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 477s Unpacking r-bioc-biocparallel (1.36.0-1) ... 477s Selecting previously unselected package r-cran-bookdown. 477s Preparing to unpack .../253-r-cran-bookdown_0.37+dfsg-1_all.deb ... 477s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 477s Selecting previously unselected package tex-common. 477s Preparing to unpack .../254-tex-common_6.18_all.deb ... 477s Unpacking tex-common (6.18) ... 477s Selecting previously unselected package t1utils. 477s Preparing to unpack .../255-t1utils_1.41-4build2_amd64.deb ... 477s Unpacking t1utils (1.41-4build2) ... 477s Selecting previously unselected package texlive-binaries. 477s Preparing to unpack .../256-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 477s Unpacking texlive-binaries (2023.20230311.66589-9) ... 477s Selecting previously unselected package texlive-base. 477s Preparing to unpack .../257-texlive-base_2023.20240207-1_all.deb ... 477s Unpacking texlive-base (2023.20240207-1) ... 479s Selecting previously unselected package texlive-latex-base. 479s Preparing to unpack .../258-texlive-latex-base_2023.20240207-1_all.deb ... 479s Unpacking texlive-latex-base (2023.20240207-1) ... 479s Selecting previously unselected package texlive-bibtex-extra. 479s Preparing to unpack .../259-texlive-bibtex-extra_2023.20240207-1_all.deb ... 479s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 482s Selecting previously unselected package r-bioc-biocstyle. 483s Preparing to unpack .../260-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 483s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 483s Selecting previously unselected package r-cran-xml. 483s Preparing to unpack .../261-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 483s Unpacking r-cran-xml (3.99-0.16.1-1) ... 483s Selecting previously unselected package r-cran-hms. 483s Preparing to unpack .../262-r-cran-hms_1.1.3-1_all.deb ... 483s Unpacking r-cran-hms (1.1.3-1) ... 483s Selecting previously unselected package r-cran-prettyunits. 483s Preparing to unpack .../263-r-cran-prettyunits_1.2.0-1_all.deb ... 483s Unpacking r-cran-prettyunits (1.2.0-1) ... 483s Selecting previously unselected package r-cran-progress. 483s Preparing to unpack .../264-r-cran-progress_1.2.3-1_all.deb ... 483s Unpacking r-cran-progress (1.2.3-1) ... 483s Selecting previously unselected package r-cran-xml2. 483s Preparing to unpack .../265-r-cran-xml2_1.3.6-1_amd64.deb ... 483s Unpacking r-cran-xml2 (1.3.6-1) ... 483s Selecting previously unselected package r-bioc-biomart. 483s Preparing to unpack .../266-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 483s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 483s Selecting previously unselected package r-cran-farver. 483s Preparing to unpack .../267-r-cran-farver_2.1.1-1_amd64.deb ... 483s Unpacking r-cran-farver (2.1.1-1) ... 483s Selecting previously unselected package r-cran-labeling. 483s Preparing to unpack .../268-r-cran-labeling_0.4.3-1_all.deb ... 483s Unpacking r-cran-labeling (0.4.3-1) ... 483s Selecting previously unselected package r-cran-colorspace. 483s Preparing to unpack .../269-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 483s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 483s Selecting previously unselected package r-cran-munsell. 483s Preparing to unpack .../270-r-cran-munsell_0.5.0-2build1_all.deb ... 483s Unpacking r-cran-munsell (0.5.0-2build1) ... 483s Selecting previously unselected package r-cran-rcolorbrewer. 483s Preparing to unpack .../271-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 483s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 483s Selecting previously unselected package r-cran-viridislite. 483s Preparing to unpack .../272-r-cran-viridislite_0.4.2-2_all.deb ... 483s Unpacking r-cran-viridislite (0.4.2-2) ... 483s Selecting previously unselected package r-cran-scales. 483s Preparing to unpack .../273-r-cran-scales_1.3.0-1_all.deb ... 483s Unpacking r-cran-scales (1.3.0-1) ... 483s Selecting previously unselected package r-cran-gtable. 483s Preparing to unpack .../274-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 483s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 483s Selecting previously unselected package r-cran-isoband. 483s Preparing to unpack .../275-r-cran-isoband_0.2.7-1_amd64.deb ... 483s Unpacking r-cran-isoband (0.2.7-1) ... 483s Selecting previously unselected package r-cran-mass. 483s Preparing to unpack .../276-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 483s Unpacking r-cran-mass (7.3-60.0.1-1) ... 483s Selecting previously unselected package r-cran-lattice. 483s Preparing to unpack .../277-r-cran-lattice_0.22-5-1_amd64.deb ... 483s Unpacking r-cran-lattice (0.22-5-1) ... 483s Selecting previously unselected package r-cran-nlme. 483s Preparing to unpack .../278-r-cran-nlme_3.1.164-1_amd64.deb ... 483s Unpacking r-cran-nlme (3.1.164-1) ... 483s Selecting previously unselected package r-cran-matrix. 483s Preparing to unpack .../279-r-cran-matrix_1.6-5-1_amd64.deb ... 483s Unpacking r-cran-matrix (1.6-5-1) ... 483s Selecting previously unselected package r-cran-mgcv. 483s Preparing to unpack .../280-r-cran-mgcv_1.9-1-1_amd64.deb ... 483s Unpacking r-cran-mgcv (1.9-1-1) ... 483s Selecting previously unselected package r-cran-ggplot2. 483s Preparing to unpack .../281-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 483s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 484s Selecting previously unselected package r-cran-cluster. 484s Preparing to unpack .../282-r-cran-cluster_2.1.6-1_amd64.deb ... 484s Unpacking r-cran-cluster (2.1.6-1) ... 484s Selecting previously unselected package r-cran-survival. 484s Preparing to unpack .../283-r-cran-survival_3.5-8-1_amd64.deb ... 484s Unpacking r-cran-survival (3.5-8-1) ... 484s Selecting previously unselected package r-cran-rpart. 484s Preparing to unpack .../284-r-cran-rpart_4.1.23-1_amd64.deb ... 484s Unpacking r-cran-rpart (4.1.23-1) ... 484s Selecting previously unselected package r-cran-nnet. 484s Preparing to unpack .../285-r-cran-nnet_7.3-19-2_amd64.deb ... 484s Unpacking r-cran-nnet (7.3-19-2) ... 484s Selecting previously unselected package r-cran-foreign. 484s Preparing to unpack .../286-r-cran-foreign_0.8.86-1_amd64.deb ... 484s Unpacking r-cran-foreign (0.8.86-1) ... 484s Selecting previously unselected package r-cran-gridextra. 484s Preparing to unpack .../287-r-cran-gridextra_2.3-3build1_all.deb ... 484s Unpacking r-cran-gridextra (2.3-3build1) ... 484s Selecting previously unselected package r-cran-data.table. 484s Preparing to unpack .../288-r-cran-data.table_1.14.10+dfsg-1_amd64.deb ... 484s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 484s Selecting previously unselected package r-cran-backports. 484s Preparing to unpack .../289-r-cran-backports_1.4.1-1_amd64.deb ... 484s Unpacking r-cran-backports (1.4.1-1) ... 484s Selecting previously unselected package r-cran-checkmate. 484s Preparing to unpack .../290-r-cran-checkmate_2.3.1-1_amd64.deb ... 484s Unpacking r-cran-checkmate (2.3.1-1) ... 484s Selecting previously unselected package r-cran-rstudioapi. 484s Preparing to unpack .../291-r-cran-rstudioapi_0.15.0-1_all.deb ... 484s Unpacking r-cran-rstudioapi (0.15.0-1) ... 484s Selecting previously unselected package r-cran-htmltable. 484s Preparing to unpack .../292-r-cran-htmltable_2.4.2-1_all.deb ... 484s Unpacking r-cran-htmltable (2.4.2-1) ... 484s Selecting previously unselected package r-cran-viridis. 484s Preparing to unpack .../293-r-cran-viridis_0.6.5-1_all.deb ... 484s Unpacking r-cran-viridis (0.6.5-1) ... 484s Selecting previously unselected package r-cran-formula. 484s Preparing to unpack .../294-r-cran-formula_1.2-5-1_all.deb ... 484s Unpacking r-cran-formula (1.2-5-1) ... 484s Selecting previously unselected package r-cran-chron. 484s Preparing to unpack .../295-r-cran-chron_2.3-61-2_amd64.deb ... 484s Unpacking r-cran-chron (2.3-61-2) ... 484s Selecting previously unselected package r-cran-jpeg. 484s Preparing to unpack .../296-r-cran-jpeg_0.1-10-1_amd64.deb ... 484s Unpacking r-cran-jpeg (0.1-10-1) ... 484s Selecting previously unselected package r-cran-deldir. 484s Preparing to unpack .../297-r-cran-deldir_2.0-4-1_amd64.deb ... 484s Unpacking r-cran-deldir (2.0-4-1) ... 484s Selecting previously unselected package r-cran-rcppeigen. 484s Preparing to unpack .../298-r-cran-rcppeigen_0.3.3.9.4-1_amd64.deb ... 484s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 484s Selecting previously unselected package r-cran-interp. 484s Preparing to unpack .../299-r-cran-interp_1.1-6-1_amd64.deb ... 484s Unpacking r-cran-interp (1.1-6-1) ... 485s Selecting previously unselected package r-cran-latticeextra. 485s Preparing to unpack .../300-r-cran-latticeextra_0.6-30-1_all.deb ... 485s Unpacking r-cran-latticeextra (0.6-30-1) ... 485s Selecting previously unselected package r-cran-acepack. 485s Preparing to unpack .../301-r-cran-acepack_1.4.2-1_amd64.deb ... 485s Unpacking r-cran-acepack (1.4.2-1) ... 485s Selecting previously unselected package r-cran-hmisc. 485s Preparing to unpack .../302-r-cran-hmisc_5.1-1-1_amd64.deb ... 485s Unpacking r-cran-hmisc (5.1-1-1) ... 485s Selecting previously unselected package r-cran-dichromat. 485s Preparing to unpack .../303-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 485s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 485s Selecting previously unselected package r-cran-matrixstats. 485s Preparing to unpack .../304-r-cran-matrixstats_1.2.0-1_amd64.deb ... 485s Unpacking r-cran-matrixstats (1.2.0-1) ... 485s Selecting previously unselected package r-bioc-matrixgenerics. 485s Preparing to unpack .../305-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 485s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 485s Selecting previously unselected package r-cran-abind. 485s Preparing to unpack .../306-r-cran-abind_1.4-5-2_all.deb ... 485s Unpacking r-cran-abind (1.4-5-2) ... 485s Selecting previously unselected package r-bioc-s4arrays. 485s Preparing to unpack .../307-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 485s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 485s Selecting previously unselected package r-bioc-sparsearray. 485s Preparing to unpack .../308-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 485s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 485s Selecting previously unselected package r-bioc-delayedarray. 485s Preparing to unpack .../309-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 485s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 485s Selecting previously unselected package r-bioc-summarizedexperiment. 485s Preparing to unpack .../310-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 485s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 485s Selecting previously unselected package r-bioc-rhtslib. 485s Preparing to unpack .../311-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 485s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 485s Selecting previously unselected package r-bioc-rsamtools. 485s Preparing to unpack .../312-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 485s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 485s Selecting previously unselected package r-bioc-genomicalignments. 485s Preparing to unpack .../313-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 485s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 485s Selecting previously unselected package r-cran-rjson. 485s Preparing to unpack .../314-r-cran-rjson_0.2.21-1_amd64.deb ... 485s Unpacking r-cran-rjson (0.2.21-1) ... 485s Selecting previously unselected package r-cran-restfulr. 485s Preparing to unpack .../315-r-cran-restfulr_0.0.15-1_amd64.deb ... 485s Unpacking r-cran-restfulr (0.0.15-1) ... 485s Selecting previously unselected package r-bioc-rtracklayer. 485s Preparing to unpack .../316-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 485s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 485s Selecting previously unselected package r-bioc-genomicfeatures. 485s Preparing to unpack .../317-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 485s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 485s Selecting previously unselected package r-bioc-bsgenome. 485s Preparing to unpack .../318-r-bioc-bsgenome_1.70.2-1_all.deb ... 485s Unpacking r-bioc-bsgenome (1.70.2-1) ... 485s Selecting previously unselected package r-bioc-variantannotation. 485s 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... 486s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 486s Selecting previously unselected package r-bioc-graph. 486s Preparing to unpack .../325-r-bioc-graph_1.80.0-1_amd64.deb ... 486s Unpacking r-bioc-graph (1.80.0-1) ... 486s Selecting previously unselected package r-bioc-rbgl. 486s Preparing to unpack .../326-r-bioc-rbgl_1.78.0+dfsg-1_amd64.deb ... 486s Unpacking r-bioc-rbgl (1.78.0+dfsg-1) ... 486s Selecting previously unselected package r-bioc-organismdbi. 486s Preparing to unpack .../327-r-bioc-organismdbi_1.44.0+dfsg-1_all.deb ... 486s Unpacking r-bioc-organismdbi (1.44.0+dfsg-1) ... 486s Selecting previously unselected package r-cran-broom. 486s Preparing to unpack .../328-r-cran-broom_1.0.5+dfsg-1_all.deb ... 486s Unpacking r-cran-broom (1.0.5+dfsg-1) ... 486s Selecting previously unselected package r-cran-forcats. 486s Preparing to unpack .../329-r-cran-forcats_1.0.0-1_all.deb ... 486s Unpacking r-cran-forcats (1.0.0-1) ... 486s Selecting previously unselected package r-cran-clipr. 486s Preparing to unpack .../330-r-cran-clipr_0.8.0-1_all.deb ... 486s Unpacking r-cran-clipr (0.8.0-1) ... 486s Selecting previously unselected package r-cran-tzdb. 486s Preparing to unpack .../331-r-cran-tzdb_0.4.0-2_amd64.deb ... 486s Unpacking r-cran-tzdb (0.4.0-2) ... 486s Selecting previously unselected package r-cran-vroom. 486s Preparing to unpack .../332-r-cran-vroom_1.6.5-1_amd64.deb ... 486s Unpacking r-cran-vroom (1.6.5-1) ... 486s Selecting previously unselected package r-cran-readr. 486s Preparing to unpack .../333-r-cran-readr_2.1.5-1_amd64.deb ... 486s Unpacking r-cran-readr (2.1.5-1) ... 486s Selecting previously unselected package r-cran-haven. 486s Preparing to unpack .../334-r-cran-haven_2.5.4-1_amd64.deb ... 486s Unpacking r-cran-haven (2.5.4-1) ... 486s Selecting previously unselected package r-cran-labelled. 486s Preparing to unpack .../335-r-cran-labelled_2.12.0-2_all.deb ... 486s Unpacking r-cran-labelled (2.12.0-2) ... 486s Selecting previously unselected package r-cran-broom.helpers. 486s Preparing to unpack .../336-r-cran-broom.helpers_1.14.0-2_all.deb ... 486s Unpacking r-cran-broom.helpers (1.14.0-2) ... 486s Selecting previously unselected package r-cran-patchwork. 486s Preparing to unpack .../337-r-cran-patchwork_1.2.0-1_all.deb ... 486s Unpacking r-cran-patchwork (1.2.0-1) ... 487s Selecting previously unselected package r-cran-ggstats. 487s Preparing to unpack .../338-r-cran-ggstats_0.5.1-2_all.deb ... 487s Unpacking r-cran-ggstats (0.5.1-2) ... 487s Selecting previously unselected package r-cran-ggally. 487s Preparing to unpack .../339-r-cran-ggally_2.2.1-1_all.deb ... 487s Unpacking r-cran-ggally (2.2.1-1) ... 487s Selecting previously unselected package r-bioc-ggbio. 487s Preparing to unpack .../340-r-bioc-ggbio_1.50.0-1_all.deb ... 487s Unpacking r-bioc-ggbio (1.50.0-1) ... 487s Selecting previously unselected package r-bioc-gviz. 487s Preparing to unpack .../341-r-bioc-gviz_1.46.1+dfsg-1_all.deb ... 487s 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up r-cran-rpart (4.1.23-1) ... 493s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 493s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 493s Setting up r-cran-fontawesome (0.5.2-1) ... 493s Setting up r-cran-latticeextra (0.6-30-1) ... 493s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 493s Setting up r-cran-viridis (0.6.5-1) ... 493s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 493s Setting up r-cran-readr (2.1.5-1) ... 493s Setting up r-cran-waldo (0.5.2-1build1) ... 493s Setting up r-cran-tidyr (1.3.1-1) ... 493s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 493s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 493s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 493s Setting up r-cran-patchwork (1.2.0-1) ... 493s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 493s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 493s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 493s Setting up r-cran-haven (2.5.4-1) ... 493s Setting up r-bioc-annotationdbi (1.64.1-1) ... 493s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 493s Setting up r-cran-testthat (3.2.1-1) ... 493s Setting up r-cran-broom (1.0.5+dfsg-1) ... 493s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 493s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 493s Setting up r-cran-labelled (2.12.0-2) ... 493s Setting up r-bioc-genomicalignments (1.38.2-1) ... 493s Setting up r-cran-bookdown (0.37+dfsg-1) ... 493s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 493s Setting up r-bioc-rtracklayer (1.62.0-1) ... 493s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 493s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 493s Setting up r-cran-broom.helpers (1.14.0-2) ... 493s Setting up r-bioc-bsgenome (1.70.2-1) ... 493s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 493s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 493s Setting up r-cran-dt (0.31+dfsg-1) ... 493s Setting up r-bioc-organismdbi (1.44.0+dfsg-1) ... 493s Setting up r-cran-ggstats (0.5.1-2) ... 493s Setting up 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This may take some time... done. 495s Running mktexlsr /var/lib/texmf ... done. 495s Building format(s) --all. 525s This may take some time... done. 530s Reading package lists... 530s Building dependency tree... 530s Reading state information... 530s Starting pkgProblemResolver with broken count: 0 530s Starting 2 pkgProblemResolver with broken count: 0 530s Done 531s The following NEW packages will be installed: 531s autopkgtest-satdep 531s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 531s Need to get 0 B/696 B of archives. 531s After this operation, 0 B of additional disk space will be used. 531s Get:1 /tmp/autopkgtest.3s12l0/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 531s Selecting previously unselected package autopkgtest-satdep. 531s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 128222 files and directories currently installed.) 531s Preparing to unpack .../2-autopkgtest-satdep.deb ... 531s Unpacking autopkgtest-satdep (0) ... 531s Setting up autopkgtest-satdep (0) ... 533s (Reading database ... 128222 files and directories currently installed.) 533s Removing autopkgtest-satdep (0) ... 533s autopkgtest [13:09:26]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 533s autopkgtest [13:09:26]: test pkg-r-autopkgtest: [----------------------- 533s Test: Try to load the R library ensembldb 533s 533s R version 4.3.2 (2023-10-31) -- "Eye Holes" 533s Copyright (C) 2023 The R Foundation for Statistical Computing 533s Platform: x86_64-pc-linux-gnu (64-bit) 533s 533s R is free software and comes with ABSOLUTELY NO WARRANTY. 533s You are welcome to redistribute it under certain conditions. 533s Type 'license()' or 'licence()' for distribution details. 533s 533s R is a collaborative project with many contributors. 533s Type 'contributors()' for more information and 533s 'citation()' on how to cite R or R packages in publications. 533s 533s Type 'demo()' for some demos, 'help()' for on-line help, or 533s 'help.start()' for an HTML browser interface to help. 533s Type 'q()' to quit R. 533s 533s > library('ensembldb') 533s Loading required package: BiocGenerics 533s 533s Attaching package: ‘BiocGenerics’ 533s 533s The following objects are masked from ‘package:stats’: 533s 533s IQR, mad, sd, var, xtabs 533s 533s The following objects are masked from ‘package:base’: 533s 533s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 533s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 533s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 533s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 533s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 533s table, tapply, union, unique, unsplit, which.max, which.min 533s 533s Loading required package: GenomicRanges 533s Loading required package: stats4 533s Loading required package: S4Vectors 534s 534s Attaching package: ‘S4Vectors’ 534s 534s The following object is masked from ‘package:utils’: 534s 534s findMatches 534s 534s The following objects are masked from ‘package:base’: 534s 534s expand.grid, I, unname 534s 534s Loading required package: IRanges 534s Loading required package: GenomeInfoDb 535s Loading required package: GenomicFeatures 535s Loading required package: AnnotationDbi 535s Loading required package: Biobase 535s Welcome to Bioconductor 535s 535s Vignettes contain introductory material; view with 535s 'browseVignettes()'. To cite Bioconductor, see 535s 'citation("Biobase")', and for packages 'citation("pkgname")'. 535s 542s Loading required package: AnnotationFilter 543s > 543s > 543s 543s Attaching package: 'ensembldb' 543s 543s The following object is masked from 'package:stats': 543s 543s filter 543s 543s Other tests are currently unsupported! 543s They will be progressively added. 543s autopkgtest [13:09:36]: test pkg-r-autopkgtest: -----------------------] 543s autopkgtest [13:09:36]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 543s pkg-r-autopkgtest PASS (superficial) 544s autopkgtest [13:09:37]: @@@@@@@@@@@@@@@@@@@@ summary 544s pkg-r-autopkgtest PASS (superficial) 553s Creating nova instance adt-noble-i386-r-bioc-ensembldb-20240321-130033-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240320.img (UUID 3219a3f4-90ea-47d9-8dfb-3912f2ae9f95)...