0s autopkgtest [02:21:50]: starting date and time: 2024-03-22 02:21:50+0000 0s autopkgtest [02:21:50]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [02:21:50]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0umbdcif/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-edaseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-59.secgroup --name adt-noble-i386-r-bioc-edaseq-20240322-022150-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 542s autopkgtest [02:30:52]: testbed dpkg architecture: amd64 542s autopkgtest [02:30:52]: testbed apt version: 2.7.12 543s autopkgtest [02:30:53]: test architecture: i386 543s autopkgtest [02:30:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup 543s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 543s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 543s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 543s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 543s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3762 kB] 543s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB] 543s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB] 543s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 543s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 543s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 543s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 543s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4236 kB] 543s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1269 kB] 543s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 543s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 543s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 543s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 546s Fetched 11.3 MB in 2s (7451 kB/s) 547s Reading package lists... 548s Reading package lists... 548s Building dependency tree... 548s Reading state information... 549s Calculating upgrade... 549s The following packages will be upgraded: 549s cloud-init fonts-ubuntu-console python3-markupsafe 549s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 549s Need to get 629 kB of archives. 549s After this operation, 11.3 kB disk space will be freed. 549s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 549s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 549s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 549s Preconfiguring packages ... 549s Fetched 629 kB in 0s (27.4 MB/s) 549s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 549s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 549s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 549s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 549s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 550s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 550s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 550s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 550s Setting up cloud-init (24.1.2-0ubuntu1) ... 551s Setting up python3-markupsafe (2.1.5-1build1) ... 551s Processing triggers for man-db (2.12.0-3) ... 552s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 552s Reading package lists... 553s Building dependency tree... 553s Reading state information... 553s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 553s sh: Attempting to set up Debian/Ubuntu apt sources automatically 553s sh: Distribution appears to be Ubuntu 554s Reading package lists... 555s Building dependency tree... 555s Reading state information... 555s eatmydata is already the newest version (131-1). 555s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 555s Reading package lists... 555s Building dependency tree... 555s Reading state information... 555s dbus is already the newest version (1.14.10-4ubuntu1). 555s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 555s Reading package lists... 556s Building dependency tree... 556s Reading state information... 556s rng-tools-debian is already the newest version (2.4). 556s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 556s Reading package lists... 556s Building dependency tree... 556s Reading state information... 556s The following packages will be REMOVED: 556s cloud-init* python3-configobj* python3-debconf* 557s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 557s After this operation, 3256 kB disk space will be freed. 557s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 557s Removing cloud-init (24.1.2-0ubuntu1) ... 557s Removing python3-configobj (5.0.8-3) ... 557s Removing python3-debconf (1.5.86) ... 557s Processing triggers for man-db (2.12.0-3) ... 558s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 558s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 558s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 558s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 558s invoke-rc.d: policy-rc.d denied execution of try-restart. 558s Reading package lists... 559s Building dependency tree... 559s Reading state information... 559s linux-generic is already the newest version (6.8.0-11.11+1). 559s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 559s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 559s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 559s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 561s Reading package lists... 561s Reading package lists... 561s Building dependency tree... 561s Reading state information... 562s Calculating upgrade... 562s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 562s Reading package lists... 562s Building dependency tree... 562s Reading state information... 563s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 563s autopkgtest [02:31:13]: rebooting testbed after setup commands that affected boot 792s autopkgtest [02:35:02]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 793s autopkgtest [02:35:03]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-edaseq 794s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-edaseq 2.36.0+dfsg-1 (dsc) [2311 B] 794s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-edaseq 2.36.0+dfsg-1 (tar) [119 kB] 794s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-edaseq 2.36.0+dfsg-1 (diff) [5568 B] 794s gpgv: Signature made Fri Dec 1 09:50:17 2023 UTC 794s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 794s gpgv: issuer "tillea@rki.de" 794s gpgv: Can't check signature: No public key 794s dpkg-source: warning: cannot verify inline signature for ./r-bioc-edaseq_2.36.0+dfsg-1.dsc: no acceptable signature found 794s autopkgtest [02:35:04]: testing package r-bioc-edaseq version 2.36.0+dfsg-1 794s autopkgtest [02:35:04]: build not needed 798s autopkgtest [02:35:08]: test pkg-r-autopkgtest: preparing testbed 803s Note, using file '/tmp/autopkgtest.4BQfKO/1-autopkgtest-satdep.dsc' to get the build dependencies 803s Reading package lists... 803s Building dependency tree... 803s Reading state information... 804s Starting pkgProblemResolver with broken count: 0 804s Starting 2 pkgProblemResolver with broken count: 0 804s Done 804s The following NEW packages will be installed: 805s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 805s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 805s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 805s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 805s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 805s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 805s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 805s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 805s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 805s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 805s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 805s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 805s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 805s libjs-highlight.js libjs-jquery libjs-jquery-datatables 805s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 805s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 805s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 805s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 805s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 805s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 805s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 805s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 805s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 805s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 805s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 805s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 805s linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css 805s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 805s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-aroma.light 805s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 805s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings 805s r-bioc-delayedarray r-bioc-deseq2 r-bioc-edaseq r-bioc-edger 805s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 805s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 805s r-bioc-limma r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 805s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread 805s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 805s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 805s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 805s r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 805s r-cran-cli r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 805s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-desc 805s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 805s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 805s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 805s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 805s r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-hwriter 805s r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 805s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 805s r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler 805s r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 805s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 805s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 805s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 805s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 805s r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 805s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 805s r-cran-rcppeigen r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rjson 805s r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass 805s r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod 805s r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat r-cran-tibble 805s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs 805s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 805s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 805s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 805s x11-common xdg-utils zip zlib1g-dev 805s 0 upgraded, 320 newly installed, 0 to remove and 0 not upgraded. 805s Need to get 464 MB of archives. 805s After this operation, 1414 MB of additional disk space will be used. 805s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 805s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 805s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 805s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 805s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 805s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 805s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 805s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 805s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 805s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 805s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 805s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 805s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 805s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 805s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 805s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 805s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 805s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 805s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 805s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 805s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 805s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 805s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 805s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 805s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 805s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 805s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 805s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 805s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 805s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 805s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 805s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 805s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 805s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 805s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 805s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 805s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 805s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 805s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 805s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 805s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 805s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 805s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 805s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 805s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 805s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 805s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 805s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 805s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 805s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 805s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 805s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 805s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 805s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 805s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 805s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 805s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 805s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 805s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 805s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 805s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 805s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 805s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 805s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 805s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 805s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 805s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 805s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 805s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 805s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 805s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 805s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 806s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 806s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 806s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 806s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 806s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 806s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 806s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 806s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 806s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 806s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 806s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 806s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 806s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 806s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 806s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 806s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 806s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 806s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 806s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 806s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 806s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 806s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 806s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 806s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 806s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 806s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 806s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 806s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 806s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 806s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 806s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 806s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 806s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 806s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 806s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 806s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 806s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 806s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 806s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 806s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 806s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 806s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 806s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 806s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 806s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 806s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 806s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 806s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 806s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 806s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 806s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 806s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 806s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 806s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 806s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 806s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 806s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 806s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 806s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 806s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 806s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 806s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 806s Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 806s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 806s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 806s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 806s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 806s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 806s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 806s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 806s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 806s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 806s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 806s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 806s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 806s Get:148 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 806s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 806s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 806s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 806s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 806s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 806s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 806s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 806s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 806s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 806s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 806s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 806s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 806s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 806s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 806s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 806s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 806s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 806s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 806s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 806s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 806s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 806s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 806s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 806s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 806s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 806s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 806s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 806s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 806s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 806s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 806s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 806s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 806s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 806s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 806s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 806s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 806s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 806s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 806s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 806s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 806s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 807s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 807s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.oo all 1.26.0-1 [955 kB] 807s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.utils all 2.12.3-1 [1386 kB] 807s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 807s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-aroma.light all 3.32.0-1 [576 kB] 807s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 807s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 807s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 807s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 807s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 807s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 807s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 807s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 807s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 807s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 807s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 807s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 807s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 807s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 807s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 807s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 807s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 807s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 807s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 807s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 807s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 807s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 807s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 807s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 807s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 807s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 807s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 807s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 807s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 807s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 807s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 807s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 807s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 807s Get:228 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 807s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 807s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 807s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 807s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 807s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 807s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 807s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 807s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 807s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 807s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 807s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 807s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 807s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 807s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 807s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 807s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 807s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 807s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 807s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 807s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 807s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 807s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 807s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 807s Get:252 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 807s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 807s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 807s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 807s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 808s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 808s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 808s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 808s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 808s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 808s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 808s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 808s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 808s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 808s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 808s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 808s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 808s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 808s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 808s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 808s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 808s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-locfit amd64 1.5-9.8-1 [513 kB] 808s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 808s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 808s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 808s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 808s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 808s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 808s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 808s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 808s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 808s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 808s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 808s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 808s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 808s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpparmadillo amd64 0.12.8.0.0-1 [862 kB] 808s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-deseq2 amd64 1.42.0+dfsg-1 [1226 kB] 808s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 808s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 808s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 808s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 808s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 808s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-deldir amd64 2.0-4-1 [270 kB] 808s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppeigen amd64 0.3.3.9.4-1 [1189 kB] 808s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 808s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 808s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-shortread amd64 1.60.0-2 [5202 kB] 808s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 808s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 808s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 808s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 808s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-edaseq all 2.36.0+dfsg-1 [384 kB] 808s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 808s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-limma amd64 3.58.1+dfsg-1 [1899 kB] 808s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-edger amd64 4.0.16+dfsg-1 [1149 kB] 808s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 808s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 808s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 808s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 808s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 808s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 808s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-kernsmooth amd64 2.23-22-1 [91.7 kB] 808s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 808s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 808s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 808s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 808s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 808s Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 808s Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 809s Preconfiguring packages ... 809s Fetched 464 MB in 4s (127 MB/s) 809s Selecting previously unselected package libc-dev-bin. 809s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 809s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 809s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 809s Selecting previously unselected package linux-libc-dev:amd64. 809s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 809s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 809s Selecting previously unselected package libcrypt-dev:amd64. 809s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 809s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 809s Selecting previously unselected package libtirpc-dev:amd64. 809s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 809s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 809s Selecting previously unselected package libnsl-dev:amd64. 809s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 809s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 810s Selecting previously unselected package rpcsvc-proto. 810s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 810s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 810s Selecting previously unselected package libc6-dev:amd64. 810s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 810s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 810s Selecting previously unselected package libisl23:amd64. 810s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 810s Unpacking libisl23:amd64 (0.26-3) ... 810s Selecting previously unselected package libmpc3:amd64. 810s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 810s Unpacking libmpc3:amd64 (1.3.1-1) ... 810s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 810s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 810s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 810s Selecting previously unselected package cpp-13. 810s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 810s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 810s Selecting previously unselected package cpp-x86-64-linux-gnu. 810s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 810s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 810s Selecting previously unselected package cpp. 810s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 810s Unpacking cpp (4:13.2.0-7ubuntu1) ... 810s Selecting previously unselected package libcc1-0:amd64. 810s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 810s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 810s Selecting previously unselected package libgomp1:amd64. 810s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 810s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 810s Selecting previously unselected package libitm1:amd64. 810s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 810s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 810s Selecting previously unselected package libatomic1:amd64. 810s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 810s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 810s Selecting previously unselected package libasan8:amd64. 810s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 810s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 810s Selecting previously unselected package liblsan0:amd64. 810s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 810s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 810s Selecting previously unselected package libtsan2:amd64. 810s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 810s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 810s Selecting previously unselected package libubsan1:amd64. 810s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 810s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 811s Selecting previously unselected package libhwasan0:amd64. 811s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 811s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 811s Selecting previously unselected package libquadmath0:amd64. 811s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 811s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 811s Selecting previously unselected package libgcc-13-dev:amd64. 811s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 811s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 811s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 811s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 811s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 811s Selecting previously unselected package gcc-13. 811s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 811s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 811s Selecting previously unselected package gcc-x86-64-linux-gnu. 811s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 811s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 811s Selecting previously unselected package gcc. 811s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 811s Unpacking gcc (4:13.2.0-7ubuntu1) ... 811s Selecting previously unselected package libstdc++-13-dev:amd64. 811s Preparing to unpack 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fonts-mathjax (2.7.9+dfsg-1) ... 813s Selecting previously unselected package libgfortran5:amd64. 813s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 813s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 813s Selecting previously unselected package libgfortran-13-dev:amd64. 813s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 813s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 813s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 813s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 813s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 813s Selecting previously unselected package gfortran-13. 813s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 813s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 813s Selecting previously unselected package gfortran-x86-64-linux-gnu. 813s Preparing to unpack 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libcairo2:amd64. 816s Preparing to unpack .../064-libcairo2_1.18.0-1_amd64.deb ... 816s Unpacking libcairo2:amd64 (1.18.0-1) ... 816s Selecting previously unselected package libdatrie1:amd64. 816s Preparing to unpack .../065-libdatrie1_0.2.13-3_amd64.deb ... 816s Unpacking libdatrie1:amd64 (0.2.13-3) ... 816s Selecting previously unselected package libdeflate0:amd64. 816s Preparing to unpack .../066-libdeflate0_1.19-1_amd64.deb ... 816s Unpacking libdeflate0:amd64 (1.19-1) ... 816s Selecting previously unselected package libgraphite2-3:amd64. 816s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_amd64.deb ... 816s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 816s Selecting previously unselected package libharfbuzz0b:amd64. 816s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_amd64.deb ... 816s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 816s Selecting previously unselected package x11-common. 816s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 816s Unpacking 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816s Selecting previously unselected package libjpeg8-dev:amd64. 816s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 816s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 816s Selecting previously unselected package libjpeg-dev:amd64. 816s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 816s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 816s Selecting previously unselected package libjs-bootstrap. 816s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 816s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 816s Selecting previously unselected package libjs-popper.js. 816s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 816s Unpacking libjs-popper.js (1.16.1+ds-6) ... 816s Selecting previously unselected package libjs-bootstrap4. 816s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 816s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 817s Selecting previously unselected package libjs-d3. 817s 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previously unselected package libpangoft2-1.0-0:amd64. 818s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 818s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 818s Selecting previously unselected package libpangocairo-1.0-0:amd64. 818s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 818s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 818s Selecting previously unselected package libpaper1:amd64. 818s Preparing to unpack .../103-libpaper1_1.1.29_amd64.deb ... 818s Unpacking libpaper1:amd64 (1.1.29) ... 818s Selecting previously unselected package libpaper-utils. 818s Preparing to unpack .../104-libpaper-utils_1.1.29_amd64.deb ... 818s Unpacking libpaper-utils (1.1.29) ... 818s Selecting previously unselected package libpcre2-16-0:amd64. 818s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 818s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 818s Selecting previously unselected package 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Preparing to unpack .../111-libpng-dev_1.6.43-1_amd64.deb ... 818s Unpacking libpng-dev:amd64 (1.6.43-1) ... 818s Selecting previously unselected package libpotrace0:amd64. 818s Preparing to unpack .../112-libpotrace0_1.16-2_amd64.deb ... 818s Unpacking libpotrace0:amd64 (1.16-2) ... 818s Selecting previously unselected package libptexenc1:amd64. 818s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_amd64.deb ... 818s Unpacking libptexenc1:amd64 (2023.20230311.66589-9) ... 818s Selecting previously unselected package libreadline-dev:amd64. 818s Preparing to unpack .../114-libreadline-dev_8.2-3_amd64.deb ... 818s Unpacking libreadline-dev:amd64 (8.2-3) ... 818s Selecting previously unselected package libsharpyuv0:amd64. 818s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_amd64.deb ... 818s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 818s Selecting previously unselected package libsm6:amd64. 818s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_amd64.deb ... 818s 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Selecting previously unselected package zip. 819s Preparing to unpack .../133-zip_3.0-13_amd64.deb ... 819s Unpacking zip (3.0-13) ... 819s Selecting previously unselected package unzip. 819s Preparing to unpack .../134-unzip_6.0-28ubuntu3_amd64.deb ... 819s Unpacking unzip (6.0-28ubuntu3) ... 819s Selecting previously unselected package xdg-utils. 819s Preparing to unpack .../135-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 819s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 819s Selecting previously unselected package r-base-core. 819s Preparing to unpack .../136-r-base-core_4.3.2-1build1_amd64.deb ... 819s Unpacking r-base-core (4.3.2-1build1) ... 819s Selecting previously unselected package r-cran-littler. 819s Preparing to unpack .../137-r-cran-littler_0.3.19-1_amd64.deb ... 819s Unpacking r-cran-littler (0.3.19-1) ... 819s Selecting previously unselected package littler. 819s Preparing to unpack .../138-littler_0.3.19-1_all.deb ... 819s Unpacking littler (0.3.19-1) ... 819s Selecting previously unselected package node-bootstrap-sass. 819s Preparing to unpack .../139-node-bootstrap-sass_3.4.3-2_all.deb ... 819s Unpacking node-bootstrap-sass (3.4.3-2) ... 819s Selecting previously unselected package node-html5shiv. 819s Preparing to unpack .../140-node-html5shiv_3.7.3+dfsg-5_all.deb ... 819s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 819s Selecting previously unselected package node-normalize.css. 819s Preparing to unpack .../141-node-normalize.css_8.0.1-5_all.deb ... 819s Unpacking node-normalize.css (8.0.1-5) ... 819s Selecting previously unselected package pandoc-data. 819s Preparing to unpack .../142-pandoc-data_3.1.3-1_all.deb ... 819s Unpacking pandoc-data (3.1.3-1) ... 819s Selecting previously unselected package pandoc. 819s Preparing to unpack .../143-pandoc_3.1.3+ds-2_amd64.deb ... 819s Unpacking pandoc (3.1.3+ds-2) ... 820s Selecting previously unselected package pkgconf-bin. 820s Preparing to unpack .../144-pkgconf-bin_1.8.1-2_amd64.deb ... 820s 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unselected package r-cran-sys. 822s Preparing to unpack .../173-r-cran-sys_3.4.2-1_amd64.deb ... 822s Unpacking r-cran-sys (3.4.2-1) ... 822s Selecting previously unselected package r-cran-askpass. 822s Preparing to unpack .../174-r-cran-askpass_1.2.0-1_amd64.deb ... 822s Unpacking r-cran-askpass (1.2.0-1) ... 822s Selecting previously unselected package r-cran-openssl. 822s Preparing to unpack .../175-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 822s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 822s Selecting previously unselected package r-cran-r6. 822s Preparing to unpack .../176-r-cran-r6_2.5.1-1_all.deb ... 822s Unpacking r-cran-r6 (2.5.1-1) ... 822s Selecting previously unselected package r-cran-httr. 822s Preparing to unpack .../177-r-cran-httr_1.4.7+dfsg-1_all.deb ... 822s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 822s Selecting previously unselected package r-cran-png. 822s Preparing to unpack .../178-r-cran-png_0.1-8-1_amd64.deb ... 822s Unpacking r-cran-png (0.1-8-1) ... 822s Selecting previously unselected package r-bioc-zlibbioc. 822s Preparing to unpack .../179-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 822s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 822s Selecting previously unselected package r-bioc-xvector. 822s Preparing to unpack .../180-r-bioc-xvector_0.42.0-1_amd64.deb ... 822s Unpacking r-bioc-xvector (0.42.0-1) ... 822s Selecting previously unselected package r-cran-bitops. 822s Preparing to unpack .../181-r-cran-bitops_1.0-7-1_amd64.deb ... 822s Unpacking r-cran-bitops (1.0-7-1) ... 822s Selecting previously unselected package r-cran-rcurl. 822s Preparing to unpack .../182-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 822s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 822s Selecting previously unselected package r-bioc-genomeinfodbdata. 822s Preparing to unpack .../183-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 822s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 822s Selecting previously unselected package r-bioc-genomeinfodb. 822s Preparing to unpack .../184-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 822s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 822s Selecting previously unselected package r-cran-crayon. 822s Preparing to unpack .../185-r-cran-crayon_1.5.2-1_all.deb ... 822s Unpacking r-cran-crayon (1.5.2-1) ... 822s Selecting previously unselected package r-bioc-biostrings. 822s Preparing to unpack .../186-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 822s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 822s Selecting previously unselected package r-bioc-keggrest. 822s Preparing to unpack .../187-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 822s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 822s Selecting previously unselected package r-bioc-annotationdbi. 822s Preparing to unpack .../188-r-bioc-annotationdbi_1.64.1-1_all.deb ... 822s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 822s Selecting previously unselected package r-cran-r.methodss3. 822s Preparing to unpack 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previously unselected package r-cran-magrittr. 823s Preparing to unpack .../195-r-cran-magrittr_2.0.3-1_amd64.deb ... 823s Unpacking r-cran-magrittr (2.0.3-1) ... 823s Selecting previously unselected package r-cran-fansi. 823s Preparing to unpack .../196-r-cran-fansi_1.0.5-1_amd64.deb ... 823s Unpacking r-cran-fansi (1.0.5-1) ... 823s Selecting previously unselected package r-cran-utf8. 823s Preparing to unpack .../197-r-cran-utf8_1.2.4-1_amd64.deb ... 823s Unpacking r-cran-utf8 (1.2.4-1) ... 823s Selecting previously unselected package r-cran-pillar. 823s Preparing to unpack .../198-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 823s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 823s Selecting previously unselected package r-cran-tibble. 823s Preparing to unpack .../199-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 823s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 823s Selecting previously unselected package r-cran-withr. 823s Preparing to unpack .../200-r-cran-withr_2.5.0-1_all.deb ... 823s Unpacking r-cran-withr (2.5.0-1) ... 823s Selecting previously unselected package r-cran-tidyselect. 823s Preparing to unpack .../201-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 823s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 823s Selecting previously unselected package r-cran-dplyr. 823s Preparing to unpack .../202-r-cran-dplyr_1.1.4-1_amd64.deb ... 823s Unpacking r-cran-dplyr (1.1.4-1) ... 823s Selecting previously unselected package r-cran-purrr. 823s Preparing to unpack .../203-r-cran-purrr_1.0.2-1_amd64.deb ... 823s Unpacking r-cran-purrr (1.0.2-1) ... 823s Selecting previously unselected package r-cran-stringi. 823s Preparing to unpack .../204-r-cran-stringi_1.8.3-1_amd64.deb ... 823s Unpacking r-cran-stringi (1.8.3-1) ... 823s Selecting previously unselected package r-cran-stringr. 823s Preparing to unpack .../205-r-cran-stringr_1.5.1-1_all.deb ... 823s Unpacking r-cran-stringr (1.5.1-1) ... 823s Selecting previously unselected package r-cran-tidyr. 823s Preparing to unpack .../206-r-cran-tidyr_1.3.1-1_amd64.deb ... 823s Unpacking r-cran-tidyr (1.3.1-1) ... 823s Selecting previously unselected package r-cran-dbplyr. 823s Preparing to unpack .../207-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 823s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 823s Selecting previously unselected package r-cran-filelock. 823s Preparing to unpack .../208-r-cran-filelock_1.0.3-1_amd64.deb ... 823s Unpacking r-cran-filelock (1.0.3-1) ... 823s Selecting previously unselected package r-bioc-biocfilecache. 823s Preparing to unpack .../209-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 823s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 823s Selecting previously unselected package r-bioc-biocio. 823s Preparing to unpack .../210-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 823s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 823s Selecting previously unselected package r-cran-formatr. 823s Preparing to unpack .../211-r-cran-formatr_1.14-1_all.deb ... 823s Unpacking r-cran-formatr (1.14-1) ... 823s Selecting previously unselected package r-cran-lambda.r. 823s Preparing to unpack .../212-r-cran-lambda.r_1.2.4-2build1_all.deb ... 823s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 823s Selecting previously unselected package r-cran-futile.options. 824s Preparing to unpack .../213-r-cran-futile.options_1.0.1-3build1_all.deb ... 824s Unpacking r-cran-futile.options (1.0.1-3build1) ... 824s Selecting previously unselected package r-cran-futile.logger. 824s Preparing to unpack .../214-r-cran-futile.logger_1.4.3-4build1_all.deb ... 824s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 824s Selecting previously unselected package r-cran-snow. 824s Preparing to unpack .../215-r-cran-snow_1%3a0.4.4-2_all.deb ... 824s Unpacking r-cran-snow (1:0.4.4-2) ... 824s Selecting previously unselected package r-cran-codetools. 824s Preparing to unpack .../216-r-cran-codetools_0.2-19-1_all.deb ... 824s Unpacking r-cran-codetools (0.2-19-1) ... 824s Selecting previously unselected package r-cran-bh. 824s Preparing to unpack .../217-r-cran-bh_1.84.0-1_all.deb ... 824s Unpacking r-cran-bh (1.84.0-1) ... 824s Selecting previously unselected package r-bioc-biocparallel. 824s Preparing to unpack .../218-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 824s Unpacking r-bioc-biocparallel (1.36.0-1) ... 824s Selecting previously unselected package r-cran-base64enc. 824s Preparing to unpack .../219-r-cran-base64enc_0.1-3-3_amd64.deb ... 824s Unpacking r-cran-base64enc (0.1-3-3) ... 824s Selecting previously unselected package r-cran-digest. 824s Preparing to unpack .../220-r-cran-digest_0.6.34-1_amd64.deb ... 824s Unpacking r-cran-digest (0.6.34-1) ... 824s Selecting previously unselected package r-cran-ellipsis. 824s Preparing to unpack .../221-r-cran-ellipsis_0.3.2-2_amd64.deb ... 824s Unpacking r-cran-ellipsis (0.3.2-2) ... 824s Selecting previously unselected package r-cran-htmltools. 824s Preparing to unpack .../222-r-cran-htmltools_0.5.7-1_amd64.deb ... 824s Unpacking r-cran-htmltools (0.5.7-1) ... 824s Selecting previously unselected package r-cran-evaluate. 824s Preparing to unpack .../223-r-cran-evaluate_0.23-1_all.deb ... 824s Unpacking r-cran-evaluate (0.23-1) ... 824s Selecting previously unselected package r-cran-xfun. 824s Preparing to unpack .../224-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 824s Unpacking r-cran-xfun (0.41+dfsg-1) ... 824s Selecting previously unselected package r-cran-highr. 824s Preparing to unpack .../225-r-cran-highr_0.10+dfsg-1_all.deb ... 824s Unpacking r-cran-highr (0.10+dfsg-1) ... 824s Selecting previously unselected package r-cran-yaml. 824s Preparing to unpack .../226-r-cran-yaml_2.3.8-1_amd64.deb ... 824s Unpacking r-cran-yaml (2.3.8-1) ... 824s Selecting previously unselected package libjs-mathjax. 824s Preparing to unpack .../227-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 824s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 825s Selecting previously unselected package r-cran-knitr. 825s Preparing to unpack .../228-r-cran-knitr_1.45+dfsg-1_all.deb ... 825s Unpacking r-cran-knitr (1.45+dfsg-1) ... 825s Selecting previously unselected package r-cran-jquerylib. 825s Preparing to unpack .../229-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 825s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 825s Selecting previously unselected package r-cran-fs. 825s Preparing to unpack .../230-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 825s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 825s Selecting previously unselected package r-cran-rappdirs. 825s Preparing to unpack .../231-r-cran-rappdirs_0.3.3-1_amd64.deb ... 825s Unpacking r-cran-rappdirs (0.3.3-1) ... 825s Selecting previously unselected package r-cran-sass. 825s Preparing to unpack .../232-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 825s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 825s Selecting previously unselected package r-cran-bslib. 825s Preparing to unpack .../233-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 825s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 825s Selecting previously unselected package r-cran-fontawesome. 825s Preparing to unpack .../234-r-cran-fontawesome_0.5.2-1_all.deb ... 825s Unpacking r-cran-fontawesome (0.5.2-1) ... 825s Selecting previously unselected package r-cran-tinytex. 825s Preparing to unpack .../235-r-cran-tinytex_0.49-1_all.deb ... 825s Unpacking r-cran-tinytex (0.49-1) ... 825s Selecting previously unselected package libjs-modernizr. 825s Preparing to unpack .../236-libjs-modernizr_2.6.2+ds1-5_all.deb ... 825s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 825s Selecting previously unselected package r-cran-pkgkitten. 825s Preparing to unpack .../237-r-cran-pkgkitten_0.2.3-1_all.deb ... 825s Unpacking r-cran-pkgkitten (0.2.3-1) ... 825s Selecting previously unselected package r-cran-rcpp. 825s Preparing to unpack .../238-r-cran-rcpp_1.0.12-1_amd64.deb ... 825s Unpacking r-cran-rcpp (1.0.12-1) ... 825s Selecting previously unselected package r-cran-later. 826s Preparing to unpack .../239-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 826s Unpacking r-cran-later (1.3.2+dfsg-1) ... 826s Selecting previously unselected package r-cran-promises. 826s Preparing to unpack .../240-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 826s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 826s Selecting previously unselected package r-cran-httpuv. 826s Preparing to unpack .../241-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 826s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 826s Selecting previously unselected package r-cran-xtable. 826s Preparing to unpack .../242-r-cran-xtable_1%3a1.8-4-2_all.deb ... 826s Unpacking r-cran-xtable (1:1.8-4-2) ... 826s Selecting previously unselected package r-cran-sourcetools. 826s Preparing to unpack .../243-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 826s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 826s Selecting previously unselected package r-cran-commonmark. 826s Preparing to unpack .../244-r-cran-commonmark_1.9.1-1_amd64.deb ... 826s Unpacking r-cran-commonmark (1.9.1-1) ... 826s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 826s Preparing to unpack .../245-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 826s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 826s Selecting previously unselected package r-cran-shiny. 826s Preparing to unpack .../246-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 826s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 826s Selecting previously unselected package r-cran-rmarkdown. 826s Preparing to unpack .../247-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 826s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 826s Selecting previously unselected package r-cran-bookdown. 826s Preparing to unpack .../248-r-cran-bookdown_0.37+dfsg-1_all.deb ... 826s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 826s Selecting previously unselected package r-cran-biocmanager. 826s Preparing to unpack .../249-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 826s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 826s Selecting previously unselected package tex-common. 826s Preparing to unpack .../250-tex-common_6.18_all.deb ... 826s Unpacking tex-common (6.18) ... 826s Selecting previously unselected package t1utils. 826s Preparing to unpack .../251-t1utils_1.41-4build2_amd64.deb ... 826s Unpacking t1utils (1.41-4build2) ... 826s Selecting previously unselected package texlive-binaries. 826s Preparing to unpack .../252-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 826s Unpacking texlive-binaries (2023.20230311.66589-9) ... 826s Selecting previously unselected package texlive-base. 826s Preparing to unpack .../253-texlive-base_2023.20240207-1_all.deb ... 826s Unpacking texlive-base (2023.20240207-1) ... 828s Selecting previously unselected package texlive-latex-base. 828s Preparing to unpack .../254-texlive-latex-base_2023.20240207-1_all.deb ... 828s Unpacking texlive-latex-base (2023.20240207-1) ... 828s Selecting previously unselected package texlive-bibtex-extra. 828s Preparing to unpack .../255-texlive-bibtex-extra_2023.20240207-1_all.deb ... 828s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 832s Selecting previously unselected package r-bioc-biocstyle. 832s Preparing to unpack .../256-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 832s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 832s Selecting previously unselected package r-cran-xml. 832s Preparing to unpack .../257-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 832s Unpacking r-cran-xml (3.99-0.16.1-1) ... 832s Selecting previously unselected package r-cran-hms. 832s Preparing to unpack .../258-r-cran-hms_1.1.3-1_all.deb ... 832s Unpacking r-cran-hms (1.1.3-1) ... 832s Selecting previously unselected package r-cran-prettyunits. 832s Preparing to unpack .../259-r-cran-prettyunits_1.2.0-1_all.deb ... 832s Unpacking r-cran-prettyunits (1.2.0-1) ... 832s Selecting previously unselected package r-cran-progress. 832s Preparing to unpack .../260-r-cran-progress_1.2.3-1_all.deb ... 832s Unpacking r-cran-progress (1.2.3-1) ... 832s Selecting previously unselected package r-cran-xml2. 832s Preparing to unpack .../261-r-cran-xml2_1.3.6-1_amd64.deb ... 832s Unpacking r-cran-xml2 (1.3.6-1) ... 832s Selecting previously unselected package r-bioc-biomart. 832s Preparing to unpack .../262-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 832s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 832s Selecting previously unselected package r-cran-lattice. 832s Preparing to unpack .../263-r-cran-lattice_0.22-5-1_amd64.deb ... 832s Unpacking r-cran-lattice (0.22-5-1) ... 832s Selecting previously unselected package r-cran-matrix. 832s Preparing to unpack .../264-r-cran-matrix_1.6-5-1_amd64.deb ... 832s Unpacking r-cran-matrix (1.6-5-1) ... 832s Selecting previously unselected package r-bioc-matrixgenerics. 832s Preparing to unpack .../265-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 832s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 832s Selecting previously unselected package r-cran-abind. 832s Preparing to unpack .../266-r-cran-abind_1.4-5-2_all.deb ... 832s Unpacking r-cran-abind (1.4-5-2) ... 832s Selecting previously unselected package r-bioc-s4arrays. 832s Preparing to unpack .../267-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 832s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 832s Selecting previously unselected package r-bioc-sparsearray. 832s Preparing to unpack .../268-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 832s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 832s Selecting previously unselected package r-bioc-delayedarray. 832s Preparing to unpack .../269-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 832s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 832s Selecting previously unselected package r-bioc-genomicranges. 832s Preparing to unpack .../270-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 832s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 832s Selecting previously unselected package r-bioc-summarizedexperiment. 832s Preparing to unpack .../271-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 832s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 832s Selecting previously unselected package r-cran-locfit. 832s Preparing to unpack .../272-r-cran-locfit_1.5-9.8-1_amd64.deb ... 832s Unpacking r-cran-locfit (1.5-9.8-1) ... 832s Selecting previously unselected package r-cran-gtable. 832s Preparing to unpack .../273-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 832s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 832s Selecting previously unselected package r-cran-isoband. 832s Preparing to unpack .../274-r-cran-isoband_0.2.7-1_amd64.deb ... 832s Unpacking r-cran-isoband (0.2.7-1) ... 833s Selecting previously unselected package r-cran-mass. 833s Preparing to unpack .../275-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 833s Unpacking r-cran-mass (7.3-60.0.1-1) ... 833s Selecting previously unselected package r-cran-nlme. 833s Preparing to unpack .../276-r-cran-nlme_3.1.164-1_amd64.deb ... 833s Unpacking r-cran-nlme (3.1.164-1) ... 833s Selecting previously unselected package r-cran-mgcv. 833s Preparing to unpack .../277-r-cran-mgcv_1.9-1-1_amd64.deb ... 833s Unpacking r-cran-mgcv (1.9-1-1) ... 833s Selecting previously unselected package r-cran-farver. 833s Preparing to unpack .../278-r-cran-farver_2.1.1-1_amd64.deb ... 833s Unpacking r-cran-farver (2.1.1-1) ... 833s Selecting previously unselected package r-cran-labeling. 833s Preparing to unpack .../279-r-cran-labeling_0.4.3-1_all.deb ... 833s Unpacking r-cran-labeling (0.4.3-1) ... 833s Selecting previously unselected package r-cran-colorspace. 833s Preparing to unpack .../280-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 833s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 833s Selecting previously unselected package r-cran-munsell. 833s Preparing to unpack .../281-r-cran-munsell_0.5.0-2build1_all.deb ... 833s Unpacking r-cran-munsell (0.5.0-2build1) ... 833s Selecting previously unselected package r-cran-rcolorbrewer. 833s Preparing to unpack .../282-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 833s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 833s Selecting previously unselected package r-cran-viridislite. 833s Preparing to unpack .../283-r-cran-viridislite_0.4.2-2_all.deb ... 833s Unpacking r-cran-viridislite (0.4.2-2) ... 833s Selecting previously unselected package r-cran-scales. 833s Preparing to unpack .../284-r-cran-scales_1.3.0-1_all.deb ... 833s Unpacking r-cran-scales (1.3.0-1) ... 833s Selecting previously unselected package r-cran-ggplot2. 833s Preparing to unpack .../285-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 833s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 833s Selecting previously unselected package r-cran-rcpparmadillo. 833s Preparing to unpack .../286-r-cran-rcpparmadillo_0.12.8.0.0-1_amd64.deb ... 833s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 833s Selecting previously unselected package r-bioc-deseq2. 833s Preparing to unpack .../287-r-bioc-deseq2_1.42.0+dfsg-1_amd64.deb ... 833s Unpacking r-bioc-deseq2 (1.42.0+dfsg-1) ... 833s Selecting previously unselected package r-bioc-rhtslib. 833s Preparing to unpack .../288-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 833s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 833s Selecting previously unselected package r-bioc-rsamtools. 833s Preparing to unpack .../289-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 833s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 834s Selecting previously unselected package r-bioc-genomicalignments. 834s Preparing to unpack .../290-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 834s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 834s Selecting previously unselected package r-cran-hwriter. 834s Preparing to unpack .../291-r-cran-hwriter_1.3.2.1-1_all.deb ... 834s Unpacking r-cran-hwriter (1.3.2.1-1) ... 834s Selecting previously unselected package r-cran-jpeg. 834s Preparing to unpack .../292-r-cran-jpeg_0.1-10-1_amd64.deb ... 834s Unpacking r-cran-jpeg (0.1-10-1) ... 834s Selecting previously unselected package r-cran-deldir. 834s Preparing to unpack .../293-r-cran-deldir_2.0-4-1_amd64.deb ... 834s Unpacking r-cran-deldir (2.0-4-1) ... 834s Selecting previously unselected package r-cran-rcppeigen. 834s Preparing to unpack .../294-r-cran-rcppeigen_0.3.3.9.4-1_amd64.deb ... 834s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 834s Selecting previously unselected package r-cran-interp. 834s Preparing to unpack .../295-r-cran-interp_1.1-6-1_amd64.deb ... 834s Unpacking r-cran-interp (1.1-6-1) ... 834s Selecting previously unselected package r-cran-latticeextra. 834s Preparing to unpack .../296-r-cran-latticeextra_0.6-30-1_all.deb ... 834s Unpacking r-cran-latticeextra (0.6-30-1) ... 834s Selecting previously unselected package r-bioc-shortread. 834s Preparing to unpack .../297-r-bioc-shortread_1.60.0-2_amd64.deb ... 834s Unpacking r-bioc-shortread (1.60.0-2) ... 834s Selecting previously unselected package r-cran-rjson. 834s Preparing to unpack .../298-r-cran-rjson_0.2.21-1_amd64.deb ... 834s Unpacking r-cran-rjson (0.2.21-1) ... 834s Selecting previously unselected package r-cran-restfulr. 834s Preparing to unpack .../299-r-cran-restfulr_0.0.15-1_amd64.deb ... 834s Unpacking r-cran-restfulr (0.0.15-1) ... 834s Selecting previously unselected package r-bioc-rtracklayer. 834s Preparing to unpack .../300-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 834s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 834s Selecting previously unselected package r-bioc-genomicfeatures. 834s Preparing to unpack .../301-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 834s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 834s Selecting previously unselected package r-bioc-edaseq. 834s Preparing to unpack .../302-r-bioc-edaseq_2.36.0+dfsg-1_all.deb ... 834s Unpacking r-bioc-edaseq (2.36.0+dfsg-1) ... 834s Selecting previously unselected package r-cran-statmod. 834s Preparing to unpack .../303-r-cran-statmod_1.5.0-1_amd64.deb ... 834s Unpacking r-cran-statmod (1.5.0-1) ... 834s Selecting previously unselected package r-bioc-limma. 834s Preparing to unpack .../304-r-bioc-limma_3.58.1+dfsg-1_amd64.deb ... 834s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 834s Selecting previously unselected package r-bioc-edger. 834s Preparing to unpack .../305-r-bioc-edger_4.0.16+dfsg-1_amd64.deb ... 834s Unpacking r-bioc-edger (4.0.16+dfsg-1) ... 834s Selecting previously unselected package r-cran-brio. 834s Preparing to unpack .../306-r-cran-brio_1.1.4-1_amd64.deb ... 834s Unpacking r-cran-brio (1.1.4-1) ... 834s Selecting previously unselected package r-cran-ps. 834s Preparing to unpack .../307-r-cran-ps_1.7.6-1_amd64.deb ... 834s Unpacking r-cran-ps (1.7.6-1) ... 835s Selecting previously unselected package r-cran-processx. 835s Preparing to unpack .../308-r-cran-processx_3.8.3-1_amd64.deb ... 835s Unpacking r-cran-processx (3.8.3-1) ... 835s Selecting previously unselected package r-cran-callr. 835s Preparing to unpack .../309-r-cran-callr_3.7.3-2_all.deb ... 835s Unpacking 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(1:1.8-4-2) ... 841s Setting up r-cran-cli (3.6.2-1) ... 841s Setting up gfortran (4:13.2.0-7ubuntu1) ... 841s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 841s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 841s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 841s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 841s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 841s Setting up r-cran-bitops (1.0-7-1) ... 841s Setting up r-cran-rprojroot (2.0.4-1) ... 841s Setting up r-cran-bit64 (4.0.5-1) ... 841s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 841s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 841s Setting up r-cran-deldir (2.0-4-1) ... 841s Setting up 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... 841s Setting up r-cran-tinytex (0.49-1) ... 841s Setting up r-cran-kernsmooth (2.23-22-1) ... 841s Setting up r-cran-knitr (1.45+dfsg-1) ... 841s Setting up r-cran-mgcv (1.9-1-1) ... 841s Setting up g++ (4:13.2.0-7ubuntu1) ... 841s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 841s Setting up r-cran-cachem (1.0.8-1) ... 841s Setting up build-essential (12.10ubuntu1) ... 841s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ... 841s Setting up r-bioc-iranges (2.36.0-1) ... 841s Setting up r-cran-rjson (0.2.21-1) ... 841s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 841s Setting up r-cran-restfulr (0.0.15-1) ... 841s Setting up r-cran-vctrs (0.6.5-1) ... 841s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 841s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 841s Setting up r-cran-ellipsis (0.3.2-2) ... 841s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 841s Setting up r-base-dev (4.3.2-1build1) ... 841s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 841s Setting up r-cran-stringr (1.5.1-1) ... 841s Setting up r-bioc-biocparallel (1.36.0-1) ... 841s Setting up r-cran-callr (3.7.3-2) ... 841s Setting up r-bioc-edger (4.0.16+dfsg-1) ... 841s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 841s Setting up r-cran-desc (1.4.3-1) ... 841s Setting up r-cran-xml2 (1.3.6-1) ... 841s Setting up r-cran-munsell (0.5.0-2build1) ... 841s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 841s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 841s Setting up r-cran-r.oo (1.26.0-1) ... 841s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 841s Setting up texlive-bibtex-extra (2023.20240207-1) ... 841s Setting up r-cran-interp (1.1-6-1) ... 841s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 841s Setting up r-cran-httr (1.4.7+dfsg-1) ... 841s Setting up r-cran-hms (1.1.3-1) ... 841s Setting up r-cran-scales (1.3.0-1) ... 841s Setting up r-cran-memoise (2.0.1-1) ... 841s Setting up r-cran-promises (1.2.1+dfsg-1) ... 841s Setting up r-cran-purrr (1.0.2-1) ... 841s Setting up r-cran-blob (1.2.4-1) ... 841s Setting up r-cran-htmltools (0.5.7-1) ... 841s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 841s Setting up r-bioc-xvector (0.42.0-1) ... 841s Setting up r-cran-pkgbuild (1.4.3-1) ... 841s Setting up r-cran-sass (0.4.8+dfsg-1) ... 841s Setting up r-cran-dplyr (1.1.4-1) ... 841s Setting up r-cran-rsqlite (2.3.4-1) ... 841s Setting up r-cran-progress (1.2.3-1) ... 841s Setting up r-cran-pkgload (1.3.4-1) ... 841s Setting up r-cran-r.utils (2.12.3-1) ... 841s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 841s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 841s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 841s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 841s Setting up r-cran-rematch2 (2.1.2-2build1) ... 841s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 841s Setting up r-cran-fontawesome (0.5.2-1) ... 841s Setting up r-cran-latticeextra (0.6-30-1) ... 841s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 841s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 841s Setting up r-cran-waldo (0.5.2-1build1) ... 841s Setting up r-cran-tidyr (1.3.1-1) ... 841s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 841s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 841s Setting up r-bioc-aroma.light (3.32.0-1) ... 841s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 841s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 841s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 841s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 841s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ... 841s Setting up r-bioc-annotationdbi (1.64.1-1) ... 841s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 841s Setting up r-cran-testthat (3.2.1-1) ... 841s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 841s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 841s Setting up r-bioc-genomicalignments (1.38.2-1) ... 841s Setting up r-cran-bookdown (0.37+dfsg-1) ... 841s Setting up r-bioc-rtracklayer (1.62.0-1) ... 841s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 841s Setting up r-bioc-shortread (1.60.0-2) ... 841s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 841s Setting up r-bioc-edaseq (2.36.0+dfsg-1) ... 841s Processing triggers for libc-bin (2.39-0ubuntu2) ... 841s Processing triggers for man-db (2.12.0-3) ... 842s Processing triggers for install-info (7.1-3) ... 842s Processing triggers for tex-common (6.18) ... 843s Running updmap-sys. This may take some time... done. 843s Running mktexlsr /var/lib/texmf ... done. 843s Building format(s) --all. 873s This may take some time... done. 879s Reading package lists... 880s Building dependency tree... 880s Reading state information... 880s Starting pkgProblemResolver with broken count: 0 880s Starting 2 pkgProblemResolver with broken count: 0 880s Done 880s The following NEW packages will be installed: 880s autopkgtest-satdep 880s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 880s Need to get 0 B/696 B of archives. 880s After this operation, 0 B of additional disk space will be used. 880s Get:1 /tmp/autopkgtest.4BQfKO/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 881s Selecting previously unselected package autopkgtest-satdep. 881s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125877 files and directories currently installed.) 881s Preparing to unpack .../2-autopkgtest-satdep.deb ... 881s Unpacking autopkgtest-satdep (0) ... 881s Setting up autopkgtest-satdep (0) ... 883s (Reading database ... 125877 files and directories currently installed.) 883s Removing autopkgtest-satdep (0) ... 883s autopkgtest [02:36:33]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 883s autopkgtest [02:36:33]: test pkg-r-autopkgtest: [----------------------- 883s Test: Try to load the R library EDASeq 883s 883s R version 4.3.2 (2023-10-31) -- "Eye Holes" 883s Copyright (C) 2023 The R Foundation for Statistical Computing 883s Platform: x86_64-pc-linux-gnu (64-bit) 883s 883s R is free software and comes with ABSOLUTELY NO WARRANTY. 883s You are welcome to redistribute it under certain conditions. 883s Type 'license()' or 'licence()' for distribution details. 883s 883s R is a collaborative project with many contributors. 883s Type 'contributors()' for more information and 883s 'citation()' on how to cite R or R packages in publications. 883s 883s Type 'demo()' for some demos, 'help()' for on-line help, or 883s 'help.start()' for an HTML browser interface to help. 883s Type 'q()' to quit R. 883s 883s > library('EDASeq') 883s Loading required package: Biobase 883s Loading required package: BiocGenerics 883s 883s Attaching package: ‘BiocGenerics’ 883s 883s The following objects are masked from ‘package:stats’: 883s 883s IQR, mad, sd, var, xtabs 883s 883s The following objects are masked from ‘package:base’: 883s 883s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 883s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 883s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 883s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 883s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 883s table, tapply, union, unique, unsplit, which.max, which.min 883s 883s Welcome to Bioconductor 883s 883s Vignettes contain introductory material; view with 883s 'browseVignettes()'. To cite Bioconductor, see 883s 'citation("Biobase")', and for packages 'citation("pkgname")'. 883s 883s Loading required package: ShortRead 883s Loading required package: BiocParallel 883s Loading required package: Biostrings 883s Loading required package: S4Vectors 883s Loading required package: stats4 884s 884s Attaching package: ‘S4Vectors’ 884s 884s The following object is masked from ‘package:utils’: 884s 884s findMatches 884s 884s The following objects are masked from ‘package:base’: 884s 884s expand.grid, I, unname 884s 884s Loading required package: IRanges 885s Loading required package: XVector 885s Loading required package: GenomeInfoDb 886s 886s Attaching package: ‘Biostrings’ 886s 886s The following object is masked from ‘package:base’: 886s 886s strsplit 886s 886s Loading required package: Rsamtools 886s Loading required package: GenomicRanges 886s Loading required package: GenomicAlignments 886s Loading required package: SummarizedExperiment 886s Loading required package: MatrixGenerics 886s Loading required package: matrixStats 886s 886s Attaching package: ‘matrixStats’ 886s 886s The following objects are masked from ‘package:Biobase’: 886s 886s anyMissing, rowMedians 886s 886s 886s Attaching package: ‘MatrixGenerics’ 886s 886s The following objects are masked from ‘package:matrixStats’: 886s 886s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 886s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 886s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 886s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 886s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 886s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 886s colWeightedMeans, colWeightedMedians, colWeightedSds, 886s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 886s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 886s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 886s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 886s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 886s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 886s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 886s rowWeightedSds, rowWeightedVars 886s 886s The following object is masked from ‘package:Biobase’: 886s 886s rowMedians 886s 894s > 894s > 894s Other tests are currently unsupported! 894s They will be progressively added. 894s autopkgtest [02:36:44]: test pkg-r-autopkgtest: -----------------------] 895s autopkgtest [02:36:45]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 895s pkg-r-autopkgtest PASS 895s autopkgtest [02:36:45]: @@@@@@@@@@@@@@@@@@@@ summary 895s pkg-r-autopkgtest PASS 905s Creating nova instance adt-noble-i386-r-bioc-edaseq-20240322-022150-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...