0s autopkgtest [12:58:37]: starting date and time: 2024-03-21 12:58:37+0000 0s autopkgtest [12:58:37]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [12:58:37]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ggqqs6dx/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-bioc-rsamtools --apt-upgrade r-bioc-edaseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-54.secgroup --name adt-noble-i386-r-bioc-edaseq-20240321-125837-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 323s autopkgtest [13:04:00]: testbed dpkg architecture: amd64 323s autopkgtest [13:04:00]: testbed apt version: 2.7.12 323s autopkgtest [13:04:00]: test architecture: i386 323s autopkgtest [13:04:00]: @@@@@@@@@@@@@@@@@@@@ test bed setup 323s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 323s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3774 kB] 324s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 324s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 324s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 324s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [460 kB] 324s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [696 kB] 324s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 324s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 324s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 324s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 324s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4238 kB] 324s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1273 kB] 324s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 324s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 324s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 324s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 327s Fetched 11.3 MB in 2s (7100 kB/s) 327s Reading package lists... 329s Reading package lists... 329s Building dependency tree... 329s Reading state information... 330s Calculating upgrade... 330s The following packages will be upgraded: 330s debianutils linux-firmware 330s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 330s Need to get 476 MB of archives. 330s After this operation, 5724 kB of additional disk space will be used. 330s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.17 [89.8 kB] 330s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-firmware amd64 20240318.git3b128b60-0ubuntu1 [475 MB] 334s Fetched 476 MB in 3s (136 MB/s) 334s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 334s Preparing to unpack .../debianutils_5.17_amd64.deb ... 334s Unpacking debianutils (5.17) over (5.16) ... 334s Setting up debianutils (5.17) ... 334s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 334s Preparing to unpack .../linux-firmware_20240318.git3b128b60-0ubuntu1_amd64.deb ... 334s Unpacking linux-firmware (20240318.git3b128b60-0ubuntu1) over (20240202.git36777504-0ubuntu1) ... 337s Setting up linux-firmware (20240318.git3b128b60-0ubuntu1) ... 337s Processing triggers for man-db (2.12.0-3) ... 338s Processing triggers for initramfs-tools (0.142ubuntu20) ... 338s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 338s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 347s Reading package lists... 347s Building dependency tree... 347s Reading state information... 347s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 348s sh: Attempting to set up Debian/Ubuntu apt sources automatically 348s sh: Distribution appears to be Ubuntu 349s Reading package lists... 349s Building dependency tree... 349s Reading state information... 350s eatmydata is already the newest version (131-1). 350s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 350s Reading package lists... 350s Building dependency tree... 350s Reading state information... 350s dbus is already the newest version (1.14.10-4ubuntu1). 350s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 350s Reading package lists... 350s Building dependency tree... 350s Reading state information... 351s rng-tools-debian is already the newest version (2.4). 351s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 351s Reading package lists... 351s Building dependency tree... 351s Reading state information... 351s The following packages will be REMOVED: 351s cloud-init* python3-configobj* python3-debconf* 352s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 352s After this operation, 3252 kB disk space will be freed. 352s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 352s Removing cloud-init (24.1.1-0ubuntu1) ... 352s Removing python3-configobj (5.0.8-3) ... 352s Removing python3-debconf (1.5.86) ... 352s Processing triggers for man-db (2.12.0-3) ... 353s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71476 files and directories currently installed.) 353s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 353s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 353s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 353s invoke-rc.d: policy-rc.d denied execution of try-restart. 354s Reading package lists... 354s Building dependency tree... 354s Reading state information... 354s linux-generic is already the newest version (6.8.0-11.11+1). 354s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 354s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 354s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 354s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 357s Reading package lists... 357s Reading package lists... 357s Building dependency tree... 357s Reading state information... 357s Calculating upgrade... 358s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 358s Reading package lists... 358s Building dependency tree... 358s Reading state information... 358s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 358s autopkgtest [13:04:35]: rebooting testbed after setup commands that affected boot 375s autopkgtest [13:04:52]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 376s autopkgtest [13:04:53]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-edaseq 377s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-edaseq 2.36.0+dfsg-1 (dsc) [2311 B] 377s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-edaseq 2.36.0+dfsg-1 (tar) [119 kB] 377s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-edaseq 2.36.0+dfsg-1 (diff) [5568 B] 377s gpgv: Signature made Fri Dec 1 09:50:17 2023 UTC 377s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 377s gpgv: issuer "tillea@rki.de" 377s gpgv: Can't check signature: No public key 377s dpkg-source: warning: cannot verify inline signature for ./r-bioc-edaseq_2.36.0+dfsg-1.dsc: no acceptable signature found 377s autopkgtest [13:04:54]: testing package r-bioc-edaseq version 2.36.0+dfsg-1 379s autopkgtest [13:04:56]: build not needed 382s autopkgtest [13:04:59]: test pkg-r-autopkgtest: preparing testbed 387s Note, using file '/tmp/autopkgtest.SsTueP/1-autopkgtest-satdep.dsc' to get the build dependencies 387s Reading package lists... 387s Building dependency tree... 387s Reading state information... 387s Starting pkgProblemResolver with broken count: 0 388s Starting 2 pkgProblemResolver with broken count: 0 388s Done 388s The following NEW packages will be installed: 388s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 388s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 388s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 388s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 388s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 388s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 388s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 388s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 388s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 388s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 388s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 388s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 388s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 388s libjs-highlight.js libjs-jquery libjs-jquery-datatables 388s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 388s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 388s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 388s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 388s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 388s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 388s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 388s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 388s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 388s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 388s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 388s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 388s linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css 388s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 388s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-aroma.light 388s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 388s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings 388s r-bioc-delayedarray r-bioc-deseq2 r-bioc-edaseq r-bioc-edger 388s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 388s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 388s r-bioc-limma r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 388s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread 388s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 388s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 388s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 388s r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 388s r-cran-cli r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 388s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-desc 388s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 388s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 388s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 388s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 388s r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-hwriter 388s r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 388s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 388s r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler 388s r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 388s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 388s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 388s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 388s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 388s r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 388s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 388s r-cran-rcppeigen r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rjson 388s r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass 388s r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod 388s r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat r-cran-tibble 388s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs 388s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 388s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 388s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 388s x11-common xdg-utils zip zlib1g-dev 388s 0 upgraded, 320 newly installed, 0 to remove and 0 not upgraded. 388s Need to get 464 MB of archives. 388s After this operation, 1414 MB of additional disk space will be used. 388s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 388s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 388s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 388s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 388s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 388s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 388s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 388s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 388s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 388s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 388s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 388s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 388s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 388s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 388s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 388s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 388s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 388s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 388s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 388s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 388s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 388s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 388s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 388s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 388s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 388s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 388s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 388s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 388s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 388s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 389s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 389s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 389s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 389s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 389s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 389s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 389s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 389s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 389s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 389s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 389s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 389s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 389s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 389s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 389s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 389s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 389s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 389s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 389s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 389s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 389s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 389s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 389s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 389s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 389s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 389s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 389s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 389s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 389s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 389s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 389s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 389s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 389s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 389s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 389s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 389s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 389s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 389s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 389s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 389s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 389s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 389s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 389s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 389s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 389s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 389s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 389s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 389s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 389s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 389s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 389s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 389s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 389s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 389s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 389s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 389s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 389s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 389s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 389s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 389s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 389s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 389s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 389s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 389s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 389s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 389s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 389s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 389s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 389s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 389s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 389s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 389s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 389s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 389s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 389s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 389s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 389s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 389s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 389s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 389s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 389s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 389s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 389s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 389s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 389s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 389s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 389s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 389s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 389s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 389s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 389s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 389s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 389s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 389s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 389s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 389s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 389s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 389s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 389s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 389s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 389s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 389s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 389s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 389s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 389s Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 389s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 389s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 389s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 389s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 389s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 389s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 389s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 389s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 389s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 389s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 389s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 389s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 389s Get:148 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 389s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 389s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 389s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 389s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 389s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 389s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 389s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 389s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 389s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 389s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 389s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 389s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 389s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 389s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 389s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 389s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 389s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 389s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 389s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 389s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 389s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 389s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 390s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 390s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 390s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 390s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 390s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 390s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 390s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 390s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 390s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 390s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 390s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 390s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 390s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 390s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 390s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 390s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 390s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 390s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 390s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 390s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 390s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.oo all 1.26.0-1 [955 kB] 390s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r.utils all 2.12.3-1 [1386 kB] 390s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 390s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-aroma.light all 3.32.0-1 [576 kB] 390s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 390s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 390s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 390s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 390s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 390s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 390s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 390s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 390s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 390s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 390s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 390s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 390s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 390s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 390s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 390s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 390s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 390s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 390s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 390s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 390s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 390s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 390s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 390s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 390s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 390s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 390s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 390s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 390s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 390s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 390s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 390s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 390s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 390s Get:228 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 390s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 390s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 390s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 390s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 390s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 390s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 390s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 390s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 390s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 390s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 390s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 390s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 390s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 390s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 390s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 390s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 390s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 390s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 390s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 390s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 390s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 390s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 390s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 390s Get:252 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 390s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 390s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 390s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 390s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 391s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 391s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 391s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 391s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 391s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 391s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 391s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 391s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 391s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 391s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 391s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 391s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 391s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 391s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 391s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 391s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 391s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-locfit amd64 1.5-9.8-1 [513 kB] 391s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 391s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 391s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 391s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 391s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 391s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 391s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 391s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 391s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 391s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 391s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 391s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 391s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 391s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpparmadillo amd64 0.12.8.0.0-1 [862 kB] 391s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-deseq2 amd64 1.42.0+dfsg-1 [1226 kB] 391s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 391s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 391s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 391s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 391s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 391s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-deldir amd64 2.0-4-1 [270 kB] 391s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppeigen amd64 0.3.3.9.4-1 [1189 kB] 391s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 391s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 391s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-shortread amd64 1.60.0-2 [5202 kB] 391s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 391s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 391s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 391s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 391s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-edaseq all 2.36.0+dfsg-1 [384 kB] 391s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 391s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-limma amd64 3.58.1+dfsg-1 [1899 kB] 391s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-edger amd64 4.0.16+dfsg-1 [1149 kB] 391s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 391s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 391s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 391s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 391s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 391s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 391s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-kernsmooth amd64 2.23-22-1 [91.7 kB] 391s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 391s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 391s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 391s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 391s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 391s Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 391s Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 392s Preconfiguring packages ... 392s Fetched 464 MB in 3s (141 MB/s) 392s Selecting previously unselected package libc-dev-bin. 392s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71421 files and directories currently installed.) 392s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 392s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 392s Selecting previously unselected package linux-libc-dev:amd64. 392s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 392s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 392s Selecting previously unselected package libcrypt-dev:amd64. 392s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 392s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 393s Selecting previously unselected package libtirpc-dev:amd64. 393s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 393s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 393s Selecting previously unselected package libnsl-dev:amd64. 393s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 393s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 393s Selecting previously unselected package rpcsvc-proto. 393s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 393s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 393s Selecting previously unselected package libc6-dev:amd64. 393s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 393s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 393s Selecting previously unselected package libisl23:amd64. 393s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 393s Unpacking libisl23:amd64 (0.26-3) ... 393s Selecting previously unselected package libmpc3:amd64. 393s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 393s Unpacking libmpc3:amd64 (1.3.1-1) ... 393s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 393s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 393s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 393s Selecting previously unselected package cpp-13. 393s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 393s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 393s Selecting previously unselected package cpp-x86-64-linux-gnu. 393s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 393s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 393s Selecting previously unselected package cpp. 393s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 393s Unpacking cpp (4:13.2.0-7ubuntu1) ... 393s Selecting previously unselected package libcc1-0:amd64. 393s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 393s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 393s Selecting previously unselected package libgomp1:amd64. 393s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 393s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 393s Selecting previously unselected package libitm1:amd64. 393s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 393s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 393s Selecting previously unselected package libatomic1:amd64. 393s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 393s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 393s Selecting previously unselected package libasan8:amd64. 393s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 393s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 393s Selecting previously unselected package liblsan0:amd64. 393s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 393s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 393s Selecting previously unselected package libtsan2:amd64. 393s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 393s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 394s Selecting previously unselected package libubsan1:amd64. 394s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 394s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 394s Selecting previously unselected package libhwasan0:amd64. 394s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 394s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 394s Selecting previously unselected package libquadmath0:amd64. 394s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 394s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 394s Selecting previously unselected package libgcc-13-dev:amd64. 394s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 394s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 394s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 394s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 394s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 394s Selecting previously unselected package gcc-13. 394s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 394s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 394s Selecting previously unselected package gcc-x86-64-linux-gnu. 394s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 394s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 394s Selecting previously unselected package gcc. 394s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 394s Unpacking gcc (4:13.2.0-7ubuntu1) ... 394s Selecting previously unselected package libstdc++-13-dev:amd64. 394s Preparing to unpack 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fonts-mathjax (2.7.9+dfsg-1) ... 395s Selecting previously unselected package libgfortran5:amd64. 395s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 395s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 396s Selecting previously unselected package libgfortran-13-dev:amd64. 396s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 396s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 396s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 396s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 396s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 396s Selecting previously unselected package gfortran-13. 396s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 396s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 396s Selecting previously unselected package gfortran-x86-64-linux-gnu. 396s Preparing to unpack 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396s Unpacking liblatex-tounicode-perl (0.54-2) ... 396s Selecting previously unselected package libbibtex-parser-perl. 396s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 396s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 396s Selecting previously unselected package libblas3:amd64. 396s Preparing to unpack .../055-libblas3_3.12.0-3_amd64.deb ... 396s Unpacking libblas3:amd64 (3.12.0-3) ... 396s Selecting previously unselected package libblas-dev:amd64. 396s Preparing to unpack .../056-libblas-dev_3.12.0-3_amd64.deb ... 396s Unpacking libblas-dev:amd64 (3.12.0-3) ... 396s Selecting previously unselected package libboost1.83-dev:amd64. 396s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 396s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 399s Selecting previously unselected package libboost-dev:amd64. 399s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 399s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ... 399s Selecting previously unselected package libbz2-dev:amd64. 399s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 399s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 399s Selecting previously unselected package libpixman-1-0:amd64. 399s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_amd64.deb ... 399s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 399s Selecting previously unselected package libxcb-render0:amd64. 399s Preparing to unpack .../061-libxcb-render0_1.15-1_amd64.deb ... 399s Unpacking libxcb-render0:amd64 (1.15-1) ... 399s Selecting previously unselected package libxcb-shm0:amd64. 399s Preparing to unpack .../062-libxcb-shm0_1.15-1_amd64.deb ... 399s Unpacking libxcb-shm0:amd64 (1.15-1) ... 399s Selecting previously unselected package libxrender1:amd64. 399s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 399s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 399s Selecting previously unselected package libcairo2:amd64. 399s Preparing to unpack .../064-libcairo2_1.18.0-1_amd64.deb ... 399s Unpacking libcairo2:amd64 (1.18.0-1) ... 399s Selecting previously unselected package libdatrie1:amd64. 399s Preparing to unpack .../065-libdatrie1_0.2.13-3_amd64.deb ... 399s Unpacking libdatrie1:amd64 (0.2.13-3) ... 399s Selecting previously unselected package libdeflate0:amd64. 399s Preparing to unpack .../066-libdeflate0_1.19-1_amd64.deb ... 399s Unpacking libdeflate0:amd64 (1.19-1) ... 399s Selecting previously unselected package libgraphite2-3:amd64. 399s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_amd64.deb ... 399s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 399s Selecting previously unselected package libharfbuzz0b:amd64. 399s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_amd64.deb ... 399s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 399s Selecting previously unselected package x11-common. 399s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 399s Unpacking x11-common (1:7.7+23ubuntu2) ... 399s Selecting previously unselected package libice6:amd64. 399s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_amd64.deb ... 399s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 399s Selecting previously unselected package libicu-dev:amd64. 399s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_amd64.deb ... 399s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 399s Selecting previously unselected package libjpeg-turbo8:amd64. 399s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 399s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 399s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 399s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 399s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 399s Selecting previously unselected package libjpeg8:amd64. 399s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_amd64.deb ... 399s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 399s Selecting previously unselected package libjpeg8-dev:amd64. 399s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 399s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 399s Selecting previously unselected package libjpeg-dev:amd64. 399s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 399s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 399s Selecting previously unselected package libjs-bootstrap. 399s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 399s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 399s Selecting previously unselected package libjs-popper.js. 399s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 399s Unpacking libjs-popper.js (1.16.1+ds-6) ... 399s Selecting previously unselected package libjs-bootstrap4. 399s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 399s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 400s Selecting previously unselected package libjs-d3. 400s 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previously unselected package libpangoft2-1.0-0:amd64. 401s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 401s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 401s Selecting previously unselected package libpangocairo-1.0-0:amd64. 401s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 401s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 401s Selecting previously unselected package libpaper1:amd64. 401s Preparing to unpack .../103-libpaper1_1.1.29_amd64.deb ... 401s Unpacking libpaper1:amd64 (1.1.29) ... 401s Selecting previously unselected package libpaper-utils. 401s Preparing to unpack .../104-libpaper-utils_1.1.29_amd64.deb ... 401s Unpacking libpaper-utils (1.1.29) ... 401s Selecting previously unselected package libpcre2-16-0:amd64. 401s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 401s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 401s Selecting previously unselected package 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Preparing to unpack .../111-libpng-dev_1.6.43-1_amd64.deb ... 401s Unpacking libpng-dev:amd64 (1.6.43-1) ... 401s Selecting previously unselected package libpotrace0:amd64. 401s Preparing to unpack .../112-libpotrace0_1.16-2_amd64.deb ... 401s Unpacking libpotrace0:amd64 (1.16-2) ... 401s Selecting previously unselected package libptexenc1:amd64. 401s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_amd64.deb ... 401s Unpacking libptexenc1:amd64 (2023.20230311.66589-9) ... 401s Selecting previously unselected package libreadline-dev:amd64. 401s Preparing to unpack .../114-libreadline-dev_8.2-3_amd64.deb ... 401s Unpacking libreadline-dev:amd64 (8.2-3) ... 401s Selecting previously unselected package libsharpyuv0:amd64. 401s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_amd64.deb ... 401s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 401s Selecting previously unselected package libsm6:amd64. 401s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_amd64.deb ... 401s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 401s Selecting previously unselected package libsynctex2:amd64. 401s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_amd64.deb ... 401s Unpacking libsynctex2:amd64 (2023.20230311.66589-9) ... 401s Selecting previously unselected package libtcl8.6:amd64. 401s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 401s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 401s Selecting previously unselected package libteckit0:amd64. 401s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_amd64.deb ... 401s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 401s Selecting previously unselected package libtexlua53-5:amd64. 401s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_amd64.deb ... 401s Unpacking libtexlua53-5:amd64 (2023.20230311.66589-9) ... 401s Selecting previously unselected package libjbig0:amd64. 401s Preparing to unpack .../121-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 401s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 401s Selecting previously unselected package libwebp7:amd64. 401s Preparing to unpack .../122-libwebp7_1.3.2-0.4_amd64.deb ... 401s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 401s Selecting previously unselected package libtiff6:amd64. 401s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 401s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 401s Selecting previously unselected package libxft2:amd64. 401s Preparing to unpack .../124-libxft2_2.3.6-1_amd64.deb ... 401s Unpacking libxft2:amd64 (2.3.6-1) ... 401s Selecting previously unselected package libxss1:amd64. 401s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_amd64.deb ... 401s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 401s Selecting previously unselected package libtk8.6:amd64. 401s Preparing to unpack .../126-libtk8.6_8.6.13-2_amd64.deb ... 401s Unpacking libtk8.6:amd64 (8.6.13-2) ... 401s Selecting previously unselected package libxt6:amd64. 401s Preparing to unpack .../127-libxt6_1%3a1.2.1-1.1_amd64.deb ... 401s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 401s Selecting previously unselected package libxmu6:amd64. 401s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_amd64.deb ... 401s Unpacking libxmu6:amd64 (2:1.1.3-3) ... 401s Selecting previously unselected package libxpm4:amd64. 401s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_amd64.deb ... 401s Unpacking libxpm4:amd64 (1:3.5.17-1) ... 402s Selecting previously unselected package libxaw7:amd64. 402s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_amd64.deb ... 402s Unpacking libxaw7:amd64 (2:1.0.14-1) ... 402s Selecting previously unselected package libxi6:amd64. 402s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_amd64.deb ... 402s Unpacking libxi6:amd64 (2:1.8.1-1) ... 402s Selecting previously unselected package libzzip-0-13:amd64. 402s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... 402s Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 402s Selecting previously unselected package zip. 402s Preparing to unpack .../133-zip_3.0-13_amd64.deb ... 402s Unpacking zip (3.0-13) ... 402s Selecting previously unselected package unzip. 402s Preparing to unpack .../134-unzip_6.0-28ubuntu3_amd64.deb ... 402s Unpacking unzip (6.0-28ubuntu3) ... 402s Selecting previously unselected package xdg-utils. 402s Preparing to unpack .../135-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 402s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 402s Selecting previously unselected package r-base-core. 402s Preparing to unpack .../136-r-base-core_4.3.2-1build1_amd64.deb ... 402s Unpacking r-base-core (4.3.2-1build1) ... 402s Selecting previously unselected package r-cran-littler. 402s Preparing to unpack .../137-r-cran-littler_0.3.19-1_amd64.deb ... 402s Unpacking r-cran-littler (0.3.19-1) ... 402s Selecting previously unselected package littler. 402s Preparing to unpack .../138-littler_0.3.19-1_all.deb ... 402s Unpacking littler (0.3.19-1) ... 402s Selecting previously unselected package node-bootstrap-sass. 402s Preparing to unpack .../139-node-bootstrap-sass_3.4.3-2_all.deb ... 402s Unpacking node-bootstrap-sass (3.4.3-2) ... 402s Selecting previously unselected package node-html5shiv. 402s Preparing to unpack .../140-node-html5shiv_3.7.3+dfsg-5_all.deb ... 402s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 402s Selecting previously unselected package node-normalize.css. 402s Preparing to unpack .../141-node-normalize.css_8.0.1-5_all.deb ... 402s Unpacking node-normalize.css (8.0.1-5) ... 402s Selecting previously unselected package pandoc-data. 402s Preparing to unpack .../142-pandoc-data_3.1.3-1_all.deb ... 402s Unpacking pandoc-data (3.1.3-1) ... 402s Selecting previously unselected package pandoc. 402s Preparing to unpack .../143-pandoc_3.1.3+ds-2_amd64.deb ... 402s Unpacking pandoc (3.1.3+ds-2) ... 403s Selecting previously unselected package pkgconf-bin. 403s Preparing to unpack .../144-pkgconf-bin_1.8.1-2_amd64.deb ... 403s Unpacking pkgconf-bin (1.8.1-2) ... 403s Selecting previously unselected package pkgconf:amd64. 403s Preparing to unpack .../145-pkgconf_1.8.1-2_amd64.deb ... 403s Unpacking pkgconf:amd64 (1.8.1-2) ... 403s Selecting previously unselected package pkg-config:amd64. 403s Preparing to unpack .../146-pkg-config_1.8.1-2_amd64.deb ... 403s Unpacking pkg-config:amd64 (1.8.1-2) ... 403s Selecting previously unselected package liblzma-dev:amd64. 403s Preparing to unpack .../147-liblzma-dev_5.4.5-0.3_amd64.deb ... 403s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 403s Selecting previously unselected package r-base-dev. 403s Preparing to unpack .../148-r-base-dev_4.3.2-1build1_all.deb ... 403s Unpacking r-base-dev (4.3.2-1build1) ... 404s Selecting previously unselected package pkg-r-autopkgtest. 404s Preparing to unpack .../149-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 404s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 404s Selecting previously unselected package r-bioc-biocgenerics. 404s Preparing to unpack .../150-r-bioc-biocgenerics_0.48.1-2_all.deb ... 404s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 404s Selecting previously unselected package r-bioc-biobase. 404s Preparing to unpack .../151-r-bioc-biobase_2.62.0-1_amd64.deb ... 404s Unpacking r-bioc-biobase (2.62.0-1) ... 404s Selecting previously unselected package r-bioc-s4vectors. 404s Preparing to unpack .../152-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 404s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 404s Selecting previously unselected package r-bioc-iranges. 404s Preparing to unpack .../153-r-bioc-iranges_2.36.0-1_amd64.deb ... 404s Unpacking r-bioc-iranges (2.36.0-1) ... 404s Selecting previously unselected package r-cran-dbi. 404s Preparing to unpack .../154-r-cran-dbi_1.2.2-1_all.deb ... 404s Unpacking r-cran-dbi (1.2.2-1) ... 404s Selecting previously unselected package r-cran-bit. 404s Preparing to unpack .../155-r-cran-bit_4.0.5-1_amd64.deb ... 404s Unpacking r-cran-bit (4.0.5-1) ... 404s Selecting previously unselected package r-cran-bit64. 404s Preparing to unpack .../156-r-cran-bit64_4.0.5-1_amd64.deb ... 404s Unpacking r-cran-bit64 (4.0.5-1) ... 404s Selecting previously unselected package r-cran-rlang. 404s Preparing to unpack .../157-r-cran-rlang_1.1.3-1_amd64.deb ... 404s Unpacking r-cran-rlang (1.1.3-1) ... 404s Selecting previously unselected package r-cran-cli. 404s Preparing to unpack .../158-r-cran-cli_3.6.2-1_amd64.deb ... 404s Unpacking r-cran-cli (3.6.2-1) ... 404s Selecting previously unselected package r-cran-glue. 404s Preparing to unpack .../159-r-cran-glue_1.7.0-1_amd64.deb ... 404s Unpacking r-cran-glue (1.7.0-1) ... 404s Selecting previously unselected package r-cran-lifecycle. 404s Preparing to unpack .../160-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 404s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 404s Selecting previously unselected package r-cran-vctrs. 404s Preparing to unpack .../161-r-cran-vctrs_0.6.5-1_amd64.deb ... 404s Unpacking r-cran-vctrs (0.6.5-1) ... 404s Selecting previously unselected package r-cran-blob. 404s Preparing to unpack .../162-r-cran-blob_1.2.4-1_all.deb ... 404s Unpacking r-cran-blob (1.2.4-1) ... 404s Selecting previously unselected package r-cran-fastmap. 404s Preparing to unpack .../163-r-cran-fastmap_1.1.1-1_amd64.deb ... 404s Unpacking r-cran-fastmap (1.1.1-1) ... 404s Selecting previously unselected package r-cran-cachem. 404s Preparing to unpack .../164-r-cran-cachem_1.0.8-1_amd64.deb ... 404s Unpacking r-cran-cachem (1.0.8-1) ... 404s Selecting previously unselected package r-cran-memoise. 404s Preparing to unpack .../165-r-cran-memoise_2.0.1-1_all.deb ... 404s Unpacking r-cran-memoise (2.0.1-1) ... 404s Selecting previously unselected package r-cran-pkgconfig. 404s Preparing to unpack .../166-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 404s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 404s Selecting previously unselected package r-cran-plogr. 404s Preparing to unpack .../167-r-cran-plogr_0.2.0-3build1_all.deb ... 404s Unpacking r-cran-plogr (0.2.0-3build1) ... 404s Selecting previously unselected package r-cran-cpp11. 404s Preparing to unpack .../168-r-cran-cpp11_0.4.7-1_all.deb ... 404s Unpacking r-cran-cpp11 (0.4.7-1) ... 404s Selecting previously unselected package r-cran-rsqlite. 404s Preparing to unpack .../169-r-cran-rsqlite_2.3.4-1_amd64.deb ... 404s Unpacking r-cran-rsqlite (2.3.4-1) ... 404s Selecting previously unselected package r-cran-curl. 405s Preparing to unpack .../170-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 405s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 405s Selecting previously unselected package r-cran-jsonlite. 405s Preparing to unpack .../171-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 405s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 405s Selecting previously unselected package r-cran-mime. 405s Preparing to unpack .../172-r-cran-mime_0.12-1_amd64.deb ... 405s Unpacking r-cran-mime (0.12-1) ... 405s Selecting previously unselected package r-cran-sys. 405s Preparing to unpack .../173-r-cran-sys_3.4.2-1_amd64.deb ... 405s Unpacking r-cran-sys (3.4.2-1) ... 405s Selecting previously unselected package r-cran-askpass. 405s Preparing to unpack .../174-r-cran-askpass_1.2.0-1_amd64.deb ... 405s Unpacking r-cran-askpass (1.2.0-1) ... 405s Selecting previously unselected package r-cran-openssl. 405s Preparing to unpack .../175-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 405s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 405s Selecting previously unselected package r-cran-r6. 405s Preparing to unpack .../176-r-cran-r6_2.5.1-1_all.deb ... 405s Unpacking r-cran-r6 (2.5.1-1) ... 405s Selecting previously unselected package r-cran-httr. 405s Preparing to unpack .../177-r-cran-httr_1.4.7+dfsg-1_all.deb ... 405s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 405s Selecting previously unselected package r-cran-png. 405s Preparing to unpack .../178-r-cran-png_0.1-8-1_amd64.deb ... 405s Unpacking r-cran-png (0.1-8-1) ... 405s Selecting previously unselected package r-bioc-zlibbioc. 405s Preparing to unpack .../179-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 405s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 405s Selecting previously unselected package r-bioc-xvector. 405s Preparing to unpack .../180-r-bioc-xvector_0.42.0-1_amd64.deb ... 405s Unpacking r-bioc-xvector (0.42.0-1) ... 405s Selecting previously unselected package r-cran-bitops. 405s Preparing to unpack .../181-r-cran-bitops_1.0-7-1_amd64.deb ... 405s Unpacking r-cran-bitops (1.0-7-1) ... 405s Selecting previously unselected package r-cran-rcurl. 405s Preparing to unpack .../182-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 405s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 405s Selecting previously unselected package r-bioc-genomeinfodbdata. 405s Preparing to unpack .../183-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 405s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 405s Selecting previously unselected package r-bioc-genomeinfodb. 405s Preparing to unpack .../184-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 405s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 405s Selecting previously unselected package r-cran-crayon. 405s Preparing to unpack .../185-r-cran-crayon_1.5.2-1_all.deb ... 405s Unpacking r-cran-crayon (1.5.2-1) ... 405s Selecting previously unselected package r-bioc-biostrings. 405s Preparing to unpack .../186-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 405s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 405s Selecting previously unselected package r-bioc-keggrest. 405s Preparing to unpack .../187-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 405s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 405s Selecting previously unselected package r-bioc-annotationdbi. 405s Preparing to unpack .../188-r-bioc-annotationdbi_1.64.1-1_all.deb ... 405s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 405s Selecting previously unselected package r-cran-r.methodss3. 405s Preparing to unpack .../189-r-cran-r.methodss3_1.8.2-1_all.deb ... 405s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 405s Selecting previously unselected package r-cran-r.oo. 405s Preparing to unpack .../190-r-cran-r.oo_1.26.0-1_all.deb ... 405s Unpacking r-cran-r.oo (1.26.0-1) ... 406s Selecting previously unselected package r-cran-r.utils. 406s Preparing to unpack .../191-r-cran-r.utils_2.12.3-1_all.deb ... 406s Unpacking r-cran-r.utils (2.12.3-1) ... 406s Selecting previously unselected package r-cran-matrixstats. 406s Preparing to unpack .../192-r-cran-matrixstats_1.2.0-1_amd64.deb ... 406s Unpacking r-cran-matrixstats (1.2.0-1) ... 406s Selecting previously unselected package r-bioc-aroma.light. 406s Preparing to unpack .../193-r-bioc-aroma.light_3.32.0-1_all.deb ... 406s Unpacking r-bioc-aroma.light (3.32.0-1) ... 406s Selecting previously unselected package r-cran-generics. 406s Preparing to unpack .../194-r-cran-generics_0.1.3-1_all.deb ... 406s Unpacking r-cran-generics (0.1.3-1) ... 406s Selecting previously unselected package r-cran-magrittr. 406s Preparing to unpack .../195-r-cran-magrittr_2.0.3-1_amd64.deb ... 406s Unpacking r-cran-magrittr (2.0.3-1) ... 406s Selecting previously unselected package r-cran-fansi. 406s Preparing to unpack .../196-r-cran-fansi_1.0.5-1_amd64.deb ... 406s Unpacking r-cran-fansi (1.0.5-1) ... 406s Selecting previously unselected package r-cran-utf8. 406s Preparing to unpack .../197-r-cran-utf8_1.2.4-1_amd64.deb ... 406s Unpacking r-cran-utf8 (1.2.4-1) ... 406s Selecting previously unselected package r-cran-pillar. 406s Preparing to unpack .../198-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 406s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 406s Selecting previously unselected package r-cran-tibble. 406s Preparing to unpack .../199-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 406s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 406s Selecting previously unselected package r-cran-withr. 406s Preparing to unpack .../200-r-cran-withr_2.5.0-1_all.deb ... 406s Unpacking r-cran-withr (2.5.0-1) ... 406s Selecting previously unselected package r-cran-tidyselect. 406s Preparing to unpack .../201-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 406s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 406s Selecting previously unselected package r-cran-dplyr. 406s Preparing to unpack .../202-r-cran-dplyr_1.1.4-1_amd64.deb ... 406s Unpacking r-cran-dplyr (1.1.4-1) ... 406s Selecting previously unselected package r-cran-purrr. 406s Preparing to unpack .../203-r-cran-purrr_1.0.2-1_amd64.deb ... 406s Unpacking r-cran-purrr (1.0.2-1) ... 406s Selecting previously unselected package r-cran-stringi. 406s Preparing to unpack .../204-r-cran-stringi_1.8.3-1_amd64.deb ... 406s Unpacking r-cran-stringi (1.8.3-1) ... 406s Selecting previously unselected package r-cran-stringr. 406s Preparing to unpack .../205-r-cran-stringr_1.5.1-1_all.deb ... 406s Unpacking r-cran-stringr (1.5.1-1) ... 406s Selecting previously unselected package r-cran-tidyr. 406s Preparing to unpack .../206-r-cran-tidyr_1.3.1-1_amd64.deb ... 406s Unpacking r-cran-tidyr (1.3.1-1) ... 406s Selecting previously unselected package r-cran-dbplyr. 406s Preparing to unpack .../207-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 406s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 406s Selecting previously unselected package r-cran-filelock. 406s Preparing to unpack .../208-r-cran-filelock_1.0.3-1_amd64.deb ... 406s Unpacking r-cran-filelock (1.0.3-1) ... 406s Selecting previously unselected package r-bioc-biocfilecache. 406s Preparing to unpack .../209-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 406s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 406s Selecting previously unselected package r-bioc-biocio. 406s Preparing to unpack .../210-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 406s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 406s Selecting previously unselected package r-cran-formatr. 406s Preparing to unpack .../211-r-cran-formatr_1.14-1_all.deb ... 406s Unpacking r-cran-formatr (1.14-1) ... 406s Selecting previously unselected package r-cran-lambda.r. 406s Preparing to unpack .../212-r-cran-lambda.r_1.2.4-2build1_all.deb ... 406s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 406s Selecting previously unselected package r-cran-futile.options. 407s Preparing to unpack .../213-r-cran-futile.options_1.0.1-3build1_all.deb ... 407s Unpacking r-cran-futile.options (1.0.1-3build1) ... 407s Selecting previously unselected package r-cran-futile.logger. 407s Preparing to unpack .../214-r-cran-futile.logger_1.4.3-4build1_all.deb ... 407s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 407s Selecting previously unselected package r-cran-snow. 407s Preparing to unpack .../215-r-cran-snow_1%3a0.4.4-2_all.deb ... 407s Unpacking r-cran-snow (1:0.4.4-2) ... 407s Selecting previously unselected package r-cran-codetools. 407s Preparing to unpack .../216-r-cran-codetools_0.2-19-1_all.deb ... 407s Unpacking r-cran-codetools (0.2-19-1) ... 407s Selecting previously unselected package r-cran-bh. 407s Preparing to unpack .../217-r-cran-bh_1.84.0-1_all.deb ... 407s Unpacking r-cran-bh (1.84.0-1) ... 407s Selecting previously unselected package r-bioc-biocparallel. 407s Preparing to unpack .../218-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 407s Unpacking r-bioc-biocparallel (1.36.0-1) ... 407s Selecting previously unselected package r-cran-base64enc. 407s Preparing to unpack .../219-r-cran-base64enc_0.1-3-3_amd64.deb ... 407s Unpacking r-cran-base64enc (0.1-3-3) ... 407s Selecting previously unselected package r-cran-digest. 407s Preparing to unpack .../220-r-cran-digest_0.6.34-1_amd64.deb ... 407s Unpacking r-cran-digest (0.6.34-1) ... 407s Selecting previously unselected package r-cran-ellipsis. 407s Preparing to unpack .../221-r-cran-ellipsis_0.3.2-2_amd64.deb ... 407s Unpacking r-cran-ellipsis (0.3.2-2) ... 407s Selecting previously unselected package r-cran-htmltools. 407s Preparing to unpack .../222-r-cran-htmltools_0.5.7-1_amd64.deb ... 407s Unpacking r-cran-htmltools (0.5.7-1) ... 407s Selecting previously unselected package r-cran-evaluate. 407s Preparing to unpack .../223-r-cran-evaluate_0.23-1_all.deb ... 407s Unpacking r-cran-evaluate (0.23-1) ... 407s Selecting previously unselected package r-cran-xfun. 407s Preparing to unpack .../224-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 407s Unpacking r-cran-xfun (0.41+dfsg-1) ... 407s Selecting previously unselected package r-cran-highr. 407s Preparing to unpack .../225-r-cran-highr_0.10+dfsg-1_all.deb ... 407s Unpacking r-cran-highr (0.10+dfsg-1) ... 407s Selecting previously unselected package r-cran-yaml. 407s Preparing to unpack .../226-r-cran-yaml_2.3.8-1_amd64.deb ... 407s Unpacking r-cran-yaml (2.3.8-1) ... 407s Selecting previously unselected package libjs-mathjax. 407s Preparing to unpack .../227-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 407s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 408s Selecting previously unselected package r-cran-knitr. 408s Preparing to unpack .../228-r-cran-knitr_1.45+dfsg-1_all.deb ... 408s Unpacking r-cran-knitr (1.45+dfsg-1) ... 408s Selecting previously unselected package r-cran-jquerylib. 408s Preparing to unpack .../229-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 408s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 408s Selecting previously unselected package r-cran-fs. 408s Preparing to unpack .../230-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 408s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 408s Selecting previously unselected package r-cran-rappdirs. 408s Preparing to unpack .../231-r-cran-rappdirs_0.3.3-1_amd64.deb ... 408s Unpacking r-cran-rappdirs (0.3.3-1) ... 408s Selecting previously unselected package r-cran-sass. 408s Preparing to unpack .../232-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 408s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 408s Selecting previously unselected package r-cran-bslib. 408s Preparing to unpack .../233-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 408s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 408s Selecting previously unselected package r-cran-fontawesome. 408s Preparing to unpack .../234-r-cran-fontawesome_0.5.2-1_all.deb ... 408s Unpacking r-cran-fontawesome (0.5.2-1) ... 408s Selecting previously unselected package r-cran-tinytex. 408s Preparing to unpack .../235-r-cran-tinytex_0.49-1_all.deb ... 408s Unpacking r-cran-tinytex (0.49-1) ... 408s Selecting previously unselected package libjs-modernizr. 408s Preparing to unpack .../236-libjs-modernizr_2.6.2+ds1-5_all.deb ... 408s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 408s Selecting previously unselected package r-cran-pkgkitten. 408s Preparing to unpack .../237-r-cran-pkgkitten_0.2.3-1_all.deb ... 408s Unpacking r-cran-pkgkitten (0.2.3-1) ... 408s Selecting previously unselected package r-cran-rcpp. 408s Preparing to unpack .../238-r-cran-rcpp_1.0.12-1_amd64.deb ... 408s Unpacking r-cran-rcpp (1.0.12-1) ... 409s Selecting previously unselected package r-cran-later. 409s Preparing to unpack .../239-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 409s Unpacking r-cran-later (1.3.2+dfsg-1) ... 409s Selecting previously unselected package r-cran-promises. 409s Preparing to unpack .../240-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 409s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 409s Selecting previously unselected package r-cran-httpuv. 409s Preparing to unpack .../241-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 409s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 409s Selecting previously unselected package r-cran-xtable. 409s Preparing to unpack .../242-r-cran-xtable_1%3a1.8-4-2_all.deb ... 409s Unpacking r-cran-xtable (1:1.8-4-2) ... 409s Selecting previously unselected package r-cran-sourcetools. 409s Preparing to unpack .../243-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 409s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 409s Selecting previously unselected package r-cran-commonmark. 409s Preparing to unpack .../244-r-cran-commonmark_1.9.1-1_amd64.deb ... 409s Unpacking r-cran-commonmark (1.9.1-1) ... 409s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 409s Preparing to unpack .../245-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 409s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 409s Selecting previously unselected package r-cran-shiny. 409s Preparing to unpack .../246-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 409s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 409s Selecting previously unselected package r-cran-rmarkdown. 409s Preparing to unpack .../247-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 409s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 409s Selecting previously unselected package r-cran-bookdown. 409s Preparing to unpack .../248-r-cran-bookdown_0.37+dfsg-1_all.deb ... 409s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 409s Selecting previously unselected package r-cran-biocmanager. 409s Preparing to unpack .../249-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 409s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 409s Selecting previously unselected package tex-common. 409s Preparing to unpack .../250-tex-common_6.18_all.deb ... 409s Unpacking tex-common (6.18) ... 409s Selecting previously unselected package t1utils. 409s Preparing to unpack .../251-t1utils_1.41-4build2_amd64.deb ... 409s Unpacking t1utils (1.41-4build2) ... 409s Selecting previously unselected package texlive-binaries. 409s Preparing to unpack .../252-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 409s Unpacking texlive-binaries (2023.20230311.66589-9) ... 409s Selecting previously unselected package texlive-base. 409s Preparing to unpack .../253-texlive-base_2023.20240207-1_all.deb ... 409s Unpacking texlive-base (2023.20240207-1) ... 411s Selecting previously unselected package texlive-latex-base. 411s Preparing to unpack .../254-texlive-latex-base_2023.20240207-1_all.deb ... 411s Unpacking texlive-latex-base (2023.20240207-1) ... 411s Selecting previously unselected package texlive-bibtex-extra. 411s Preparing to unpack .../255-texlive-bibtex-extra_2023.20240207-1_all.deb ... 411s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 415s Selecting previously unselected package r-bioc-biocstyle. 415s Preparing to unpack .../256-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 415s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 415s Selecting previously unselected package r-cran-xml. 415s Preparing to unpack .../257-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 415s Unpacking r-cran-xml (3.99-0.16.1-1) ... 415s Selecting previously unselected package r-cran-hms. 415s Preparing to unpack .../258-r-cran-hms_1.1.3-1_all.deb ... 415s Unpacking r-cran-hms (1.1.3-1) ... 415s Selecting previously unselected package r-cran-prettyunits. 415s Preparing to unpack .../259-r-cran-prettyunits_1.2.0-1_all.deb ... 415s Unpacking r-cran-prettyunits (1.2.0-1) ... 415s Selecting previously unselected package r-cran-progress. 415s Preparing to unpack .../260-r-cran-progress_1.2.3-1_all.deb ... 415s Unpacking r-cran-progress (1.2.3-1) ... 415s Selecting previously unselected package r-cran-xml2. 415s Preparing to unpack .../261-r-cran-xml2_1.3.6-1_amd64.deb ... 415s Unpacking r-cran-xml2 (1.3.6-1) ... 415s Selecting previously unselected package r-bioc-biomart. 415s Preparing to unpack .../262-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 415s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 415s Selecting previously unselected package r-cran-lattice. 415s Preparing to unpack .../263-r-cran-lattice_0.22-5-1_amd64.deb ... 415s Unpacking r-cran-lattice (0.22-5-1) ... 415s Selecting previously unselected package r-cran-matrix. 415s Preparing to unpack .../264-r-cran-matrix_1.6-5-1_amd64.deb ... 415s Unpacking r-cran-matrix (1.6-5-1) ... 415s Selecting previously unselected package r-bioc-matrixgenerics. 415s Preparing to unpack .../265-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 415s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 415s Selecting previously unselected package r-cran-abind. 415s Preparing to unpack .../266-r-cran-abind_1.4-5-2_all.deb ... 415s Unpacking r-cran-abind (1.4-5-2) ... 415s Selecting previously unselected package r-bioc-s4arrays. 415s Preparing to unpack .../267-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 415s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 415s Selecting previously unselected package r-bioc-sparsearray. 415s Preparing to unpack .../268-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 415s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 415s Selecting previously unselected package r-bioc-delayedarray. 415s Preparing to unpack .../269-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 415s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 416s Selecting previously unselected package r-bioc-genomicranges. 416s Preparing to unpack .../270-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 416s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 416s Selecting previously unselected package r-bioc-summarizedexperiment. 416s Preparing to unpack .../271-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 416s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 416s Selecting previously unselected package r-cran-locfit. 416s Preparing to unpack .../272-r-cran-locfit_1.5-9.8-1_amd64.deb ... 416s Unpacking r-cran-locfit (1.5-9.8-1) ... 416s Selecting previously unselected package r-cran-gtable. 416s Preparing to unpack .../273-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 416s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 416s Selecting previously unselected package r-cran-isoband. 416s Preparing to unpack .../274-r-cran-isoband_0.2.7-1_amd64.deb ... 416s Unpacking r-cran-isoband (0.2.7-1) ... 416s Selecting previously unselected package r-cran-mass. 416s Preparing to unpack .../275-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 416s Unpacking r-cran-mass (7.3-60.0.1-1) ... 416s Selecting previously unselected package r-cran-nlme. 416s Preparing to unpack .../276-r-cran-nlme_3.1.164-1_amd64.deb ... 416s Unpacking r-cran-nlme (3.1.164-1) ... 416s Selecting previously unselected package r-cran-mgcv. 416s Preparing to unpack .../277-r-cran-mgcv_1.9-1-1_amd64.deb ... 416s Unpacking r-cran-mgcv (1.9-1-1) ... 416s Selecting previously unselected package r-cran-farver. 416s Preparing to unpack .../278-r-cran-farver_2.1.1-1_amd64.deb ... 416s Unpacking r-cran-farver (2.1.1-1) ... 416s Selecting previously unselected package r-cran-labeling. 416s Preparing to unpack .../279-r-cran-labeling_0.4.3-1_all.deb ... 416s Unpacking r-cran-labeling (0.4.3-1) ... 416s Selecting previously unselected package r-cran-colorspace. 416s Preparing to unpack .../280-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 416s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 416s Selecting previously unselected package r-cran-munsell. 416s Preparing to unpack .../281-r-cran-munsell_0.5.0-2build1_all.deb ... 416s Unpacking r-cran-munsell (0.5.0-2build1) ... 416s Selecting previously unselected package r-cran-rcolorbrewer. 416s Preparing to unpack .../282-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 416s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 416s Selecting previously unselected package r-cran-viridislite. 416s Preparing to unpack .../283-r-cran-viridislite_0.4.2-2_all.deb ... 416s Unpacking r-cran-viridislite (0.4.2-2) ... 416s Selecting previously unselected package r-cran-scales. 416s Preparing to unpack .../284-r-cran-scales_1.3.0-1_all.deb ... 416s Unpacking r-cran-scales (1.3.0-1) ... 416s Selecting previously unselected package r-cran-ggplot2. 416s Preparing to unpack .../285-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 416s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 416s Selecting previously unselected package r-cran-rcpparmadillo. 416s Preparing to unpack .../286-r-cran-rcpparmadillo_0.12.8.0.0-1_amd64.deb ... 416s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 417s Selecting previously unselected package r-bioc-deseq2. 417s Preparing to unpack .../287-r-bioc-deseq2_1.42.0+dfsg-1_amd64.deb ... 417s Unpacking r-bioc-deseq2 (1.42.0+dfsg-1) ... 417s Selecting previously unselected package r-bioc-rhtslib. 417s Preparing to unpack .../288-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 417s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 417s Selecting previously unselected package r-bioc-rsamtools. 417s Preparing to unpack .../289-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 417s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 417s Selecting previously unselected package r-bioc-genomicalignments. 417s Preparing to unpack .../290-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 417s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 417s Selecting previously unselected package r-cran-hwriter. 417s Preparing to unpack .../291-r-cran-hwriter_1.3.2.1-1_all.deb ... 417s Unpacking r-cran-hwriter (1.3.2.1-1) ... 417s Selecting previously unselected package r-cran-jpeg. 417s Preparing to unpack .../292-r-cran-jpeg_0.1-10-1_amd64.deb ... 417s Unpacking r-cran-jpeg (0.1-10-1) ... 417s Selecting previously unselected package r-cran-deldir. 417s Preparing to unpack .../293-r-cran-deldir_2.0-4-1_amd64.deb ... 417s Unpacking r-cran-deldir (2.0-4-1) ... 417s Selecting previously unselected package r-cran-rcppeigen. 417s Preparing to unpack .../294-r-cran-rcppeigen_0.3.3.9.4-1_amd64.deb ... 417s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 417s Selecting previously unselected package r-cran-interp. 417s Preparing to unpack .../295-r-cran-interp_1.1-6-1_amd64.deb ... 417s Unpacking r-cran-interp (1.1-6-1) ... 417s Selecting previously unselected package r-cran-latticeextra. 417s Preparing to unpack .../296-r-cran-latticeextra_0.6-30-1_all.deb ... 417s Unpacking r-cran-latticeextra (0.6-30-1) ... 417s Selecting previously unselected package r-bioc-shortread. 417s Preparing to unpack .../297-r-bioc-shortread_1.60.0-2_amd64.deb ... 417s Unpacking r-bioc-shortread (1.60.0-2) ... 417s Selecting previously unselected package r-cran-rjson. 417s Preparing to unpack .../298-r-cran-rjson_0.2.21-1_amd64.deb ... 417s Unpacking r-cran-rjson (0.2.21-1) ... 417s Selecting previously unselected package r-cran-restfulr. 417s Preparing to unpack .../299-r-cran-restfulr_0.0.15-1_amd64.deb ... 417s Unpacking r-cran-restfulr (0.0.15-1) ... 417s Selecting previously unselected package r-bioc-rtracklayer. 417s Preparing to unpack .../300-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 417s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 417s Selecting previously unselected package r-bioc-genomicfeatures. 417s Preparing to unpack .../301-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 417s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 417s Selecting previously unselected package r-bioc-edaseq. 417s Preparing to unpack .../302-r-bioc-edaseq_2.36.0+dfsg-1_all.deb ... 417s Unpacking r-bioc-edaseq (2.36.0+dfsg-1) ... 417s Selecting previously unselected package r-cran-statmod. 417s Preparing to unpack .../303-r-cran-statmod_1.5.0-1_amd64.deb ... 417s Unpacking r-cran-statmod (1.5.0-1) ... 417s Selecting previously unselected package r-bioc-limma. 417s Preparing to unpack .../304-r-bioc-limma_3.58.1+dfsg-1_amd64.deb ... 417s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 418s Selecting previously unselected package r-bioc-edger. 418s Preparing to unpack .../305-r-bioc-edger_4.0.16+dfsg-1_amd64.deb ... 418s Unpacking r-bioc-edger (4.0.16+dfsg-1) ... 418s Selecting previously unselected package r-cran-brio. 418s Preparing to unpack .../306-r-cran-brio_1.1.4-1_amd64.deb ... 418s Unpacking r-cran-brio (1.1.4-1) ... 418s Selecting previously unselected package r-cran-ps. 418s Preparing to unpack .../307-r-cran-ps_1.7.6-1_amd64.deb ... 418s Unpacking r-cran-ps (1.7.6-1) ... 418s Selecting previously unselected package r-cran-processx. 418s Preparing to unpack .../308-r-cran-processx_3.8.3-1_amd64.deb ... 418s Unpacking r-cran-processx (3.8.3-1) ... 418s Selecting previously unselected package r-cran-callr. 418s Preparing to unpack .../309-r-cran-callr_3.7.3-2_all.deb ... 418s Unpacking r-cran-callr (3.7.3-2) ... 418s Selecting previously unselected package r-cran-desc. 418s Preparing to unpack .../310-r-cran-desc_1.4.3-1_all.deb ... 418s Unpacking r-cran-desc (1.4.3-1) ... 418s Selecting previously unselected package r-cran-diffobj. 418s Preparing to unpack .../311-r-cran-diffobj_0.3.5-1_amd64.deb ... 418s Unpacking r-cran-diffobj (0.3.5-1) ... 418s Selecting previously unselected package r-cran-kernsmooth. 418s Preparing to unpack .../312-r-cran-kernsmooth_2.23-22-1_amd64.deb ... 418s Unpacking r-cran-kernsmooth (2.23-22-1) ... 418s Selecting previously unselected package r-cran-pkgbuild. 418s Preparing to unpack .../313-r-cran-pkgbuild_1.4.3-1_all.deb ... 418s Unpacking r-cran-pkgbuild (1.4.3-1) ... 418s Selecting previously unselected package r-cran-rprojroot. 418s Preparing to unpack .../314-r-cran-rprojroot_2.0.4-1_all.deb ... 418s Unpacking r-cran-rprojroot (2.0.4-1) ... 418s Selecting previously unselected package r-cran-pkgload. 418s Preparing to unpack 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r-cran-bslib (0.6.1+dfsg-1) ... 424s Setting up r-cran-waldo (0.5.2-1build1) ... 424s Setting up r-cran-tidyr (1.3.1-1) ... 424s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 424s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 424s Setting up r-bioc-aroma.light (3.32.0-1) ... 424s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 424s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 424s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 424s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 424s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ... 424s Setting up r-bioc-annotationdbi (1.64.1-1) ... 424s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 424s Setting up r-cran-testthat (3.2.1-1) ... 424s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 424s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 424s Setting up r-bioc-genomicalignments (1.38.2-1) ... 424s Setting up r-cran-bookdown (0.37+dfsg-1) ... 424s Setting up r-bioc-rtracklayer (1.62.0-1) ... 424s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 424s Setting up r-bioc-shortread (1.60.0-2) ... 424s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 424s Setting up r-bioc-edaseq (2.36.0+dfsg-1) ... 424s Processing triggers for libc-bin (2.39-0ubuntu2) ... 424s Processing triggers for man-db (2.12.0-3) ... 425s Processing triggers for install-info (7.1-3) ... 425s Processing triggers for tex-common (6.18) ... 426s Running updmap-sys. This may take some time... done. 426s Running mktexlsr /var/lib/texmf ... done. 426s Building format(s) --all. 457s This may take some time... done. 458s Reading package lists... 458s Building dependency tree... 458s Reading state information... 459s Starting pkgProblemResolver with broken count: 0 459s Starting 2 pkgProblemResolver with broken count: 0 459s Done 459s The following NEW packages will be installed: 459s autopkgtest-satdep 459s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 459s Need to get 0 B/696 B of archives. 459s After this operation, 0 B of additional disk space will be used. 459s Get:1 /tmp/autopkgtest.SsTueP/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 459s Selecting previously unselected package autopkgtest-satdep. 459s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125878 files and directories currently installed.) 459s Preparing to unpack .../2-autopkgtest-satdep.deb ... 459s Unpacking autopkgtest-satdep (0) ... 459s Setting up autopkgtest-satdep (0) ... 461s (Reading database ... 125878 files and directories currently installed.) 461s Removing autopkgtest-satdep (0) ... 461s autopkgtest [13:06:18]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 461s autopkgtest [13:06:18]: test pkg-r-autopkgtest: [----------------------- 461s Test: Try to load the R library EDASeq 461s 461s R version 4.3.2 (2023-10-31) -- "Eye Holes" 461s Copyright (C) 2023 The R Foundation for Statistical Computing 461s Platform: x86_64-pc-linux-gnu (64-bit) 461s 461s R is free software and comes with ABSOLUTELY NO WARRANTY. 461s You are welcome to redistribute it under certain conditions. 461s Type 'license()' or 'licence()' for distribution details. 461s 461s R is a collaborative project with many contributors. 461s Type 'contributors()' for more information and 461s 'citation()' on how to cite R or R packages in publications. 461s 461s Type 'demo()' for some demos, 'help()' for on-line help, or 461s 'help.start()' for an HTML browser interface to help. 461s Type 'q()' to quit R. 461s 461s > library('EDASeq') 461s Loading required package: Biobase 461s Loading required package: BiocGenerics 462s 462s Attaching package: ‘BiocGenerics’ 462s 462s The following objects are masked from ‘package:stats’: 462s 462s IQR, mad, sd, var, xtabs 462s 462s The following objects are masked from ‘package:base’: 462s 462s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 462s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 462s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 462s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 462s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 462s table, tapply, union, unique, unsplit, which.max, which.min 462s 462s Welcome to Bioconductor 462s 462s Vignettes contain introductory material; view with 462s 'browseVignettes()'. To cite Bioconductor, see 462s 'citation("Biobase")', and for packages 'citation("pkgname")'. 462s 462s Loading required package: ShortRead 462s Loading required package: BiocParallel 462s Loading required package: Biostrings 462s Loading required package: S4Vectors 462s Loading required package: stats4 462s 462s Attaching package: ‘S4Vectors’ 462s 462s The following object is masked from ‘package:utils’: 462s 462s findMatches 462s 462s The following objects are masked from ‘package:base’: 462s 462s expand.grid, I, unname 462s 462s Loading required package: IRanges 463s Loading required package: XVector 463s Loading required package: GenomeInfoDb 464s 464s Attaching package: ‘Biostrings’ 464s 464s The following object is masked from ‘package:base’: 464s 464s strsplit 464s 464s Loading required package: Rsamtools 464s Loading required package: GenomicRanges 465s Loading required package: GenomicAlignments 465s Loading required package: SummarizedExperiment 465s Loading required package: MatrixGenerics 465s Loading required package: matrixStats 465s 465s Attaching package: ‘matrixStats’ 465s 465s The following objects are masked from ‘package:Biobase’: 465s 465s anyMissing, rowMedians 465s 465s 465s Attaching package: ‘MatrixGenerics’ 465s 465s The following objects are masked from ‘package:matrixStats’: 465s 465s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 465s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 465s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 465s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 465s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 465s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 465s colWeightedMeans, colWeightedMedians, colWeightedSds, 465s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 465s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 465s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 465s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 465s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 465s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 465s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 465s rowWeightedSds, rowWeightedVars 465s 465s The following object is masked from ‘package:Biobase’: 465s 465s rowMedians 465s 472s > 472s > 472s Other tests are currently unsupported! 472s They will be progressively added. 473s autopkgtest [13:06:30]: test pkg-r-autopkgtest: -----------------------] 473s pkg-r-autopkgtest PASS 473s autopkgtest [13:06:30]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 473s autopkgtest [13:06:30]: @@@@@@@@@@@@@@@@@@@@ summary 473s pkg-r-autopkgtest PASS 488s Creating nova instance adt-noble-i386-r-bioc-edaseq-20240321-125837-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240320.img (UUID 3219a3f4-90ea-47d9-8dfb-3912f2ae9f95)...