0s autopkgtest [02:13:23]: starting date and time: 2024-03-22 02:13:23+0000 0s autopkgtest [02:13:23]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [02:13:23]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.d758tbdk/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-dexseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-60.secgroup --name adt-noble-i386-r-bioc-dexseq-20240322-021323-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 341s autopkgtest [02:19:04]: testbed dpkg architecture: amd64 341s autopkgtest [02:19:04]: testbed apt version: 2.7.12 341s autopkgtest [02:19:04]: test architecture: i386 341s autopkgtest [02:19:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 341s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 341s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 341s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 342s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 342s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3762 kB] 342s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB] 342s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB] 342s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 342s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 342s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 342s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 342s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1269 kB] 342s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4236 kB] 342s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 342s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 342s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 342s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 345s Fetched 11.3 MB in 1s (7712 kB/s) 345s Reading package lists... 347s Reading package lists... 347s Building dependency tree... 347s Reading state information... 348s Calculating upgrade... 348s The following packages will be upgraded: 348s cloud-init fonts-ubuntu-console python3-markupsafe 348s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 348s Need to get 629 kB of archives. 348s After this operation, 11.3 kB disk space will be freed. 348s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 348s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 348s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 349s Preconfiguring packages ... 349s Fetched 629 kB in 0s (19.5 MB/s) 349s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 349s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 349s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 349s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 349s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 349s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 349s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 349s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 349s Setting up cloud-init (24.1.2-0ubuntu1) ... 351s Setting up python3-markupsafe (2.1.5-1build1) ... 351s Processing triggers for man-db (2.12.0-3) ... 351s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 352s Reading package lists... 352s Building dependency tree... 352s Reading state information... 352s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 353s sh: Attempting to set up Debian/Ubuntu apt sources automatically 353s sh: Distribution appears to be Ubuntu 354s Reading package lists... 354s Building dependency tree... 354s Reading state information... 354s eatmydata is already the newest version (131-1). 354s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 354s Reading package lists... 354s Building dependency tree... 354s Reading state information... 355s dbus is already the newest version (1.14.10-4ubuntu1). 355s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 355s Reading package lists... 355s Building dependency tree... 355s Reading state information... 355s rng-tools-debian is already the newest version (2.4). 355s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 355s Reading package lists... 356s Building dependency tree... 356s Reading state information... 356s The following packages will be REMOVED: 356s cloud-init* python3-configobj* python3-debconf* 356s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 356s After this operation, 3256 kB disk space will be freed. 361s (Reading database ... Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 361s (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 361s Removing cloud-init (24.1.2-0ubuntu1) ... 361s Removing python3-configobj (5.0.8-3) ... 361s Removing python3-debconf (1.5.86) ... 361s Processing triggers for man-db (2.12.0-3) ... 361s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 361s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 361s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 361s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 361s invoke-rc.d: policy-rc.d denied execution of try-restart. 361s Reading package lists... 361s Building dependency tree... 361s Reading state information... 361s linux-generic is already the newest version (6.8.0-11.11+1). 361s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 361s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 361s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 361s Reading package lists... 361s Reading package lists... 361s Building dependency tree... 361s Reading state information... 362s Calculating upgrade... 362s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 362s Reading package lists... 362s Building dependency tree... 362s Reading state information... 362s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 363s autopkgtest [02:19:26]: rebooting testbed after setup commands that affected boot 408s autopkgtest [02:20:11]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 409s autopkgtest [02:20:11]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-dexseq 410s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-dexseq 1.48.0+dfsg-1 (dsc) [2415 B] 410s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-dexseq 1.48.0+dfsg-1 (tar) [50.4 kB] 410s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-dexseq 1.48.0+dfsg-1 (diff) [2920 B] 410s gpgv: Signature made Fri Dec 1 06:39:45 2023 UTC 410s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 410s gpgv: issuer "tillea@rki.de" 410s gpgv: Can't check signature: No public key 410s dpkg-source: warning: cannot verify inline signature for ./r-bioc-dexseq_1.48.0+dfsg-1.dsc: no acceptable signature found 410s autopkgtest [02:20:13]: testing package r-bioc-dexseq version 1.48.0+dfsg-1 413s autopkgtest [02:20:16]: build not needed 415s autopkgtest [02:20:18]: test pkg-r-autopkgtest: preparing testbed 422s Note, using file '/tmp/autopkgtest.fYJifr/1-autopkgtest-satdep.dsc' to get the build dependencies 422s Reading package lists... 422s Building dependency tree... 422s Reading state information... 422s Starting pkgProblemResolver with broken count: 0 422s Starting 2 pkgProblemResolver with broken count: 0 422s Done 423s The following NEW packages will be installed: 423s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 423s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 423s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 423s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 423s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 423s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu hdf5-helpers 423s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 423s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 423s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 423s libcrypt-dev libcurl4-openssl-dev libdatrie1 libdeflate0 libfontconfig1 423s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 423s libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev 423s libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 423s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 423s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 423s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 423s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 423s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 423s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 423s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 423s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 423s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 423s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 423s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 423s libpotrace0 libptexenc1 libquadmath0 libreadline-dev libsharpyuv0 libsm6 423s libsnappy1v5 libssl-dev libstdc++-13-dev libsynctex2 libsz2 libtcl8.6 423s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 423s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 423s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 423s linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css 423s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 423s r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-beachmat 423s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 423s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings 423s r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-deseq2 r-bioc-dexseq 423s r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb 423s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 423s r-bioc-genomicranges r-bioc-glmgampoi r-bioc-hdf5array r-bioc-iranges 423s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters 423s r-bioc-rhdf5lib r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 423s r-bioc-s4arrays r-bioc-s4vectors r-bioc-singlecellexperiment 423s r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-summarizedexperiment 423s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 423s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 423s r-cran-blob r-cran-bookdown r-cran-brew r-cran-brio r-cran-bslib 423s r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools r-cran-colorspace 423s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 423s r-cran-dbplyr r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr 423s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap 423s r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 423s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 423s r-cran-glue r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools 423s r-cran-httpuv r-cran-httr r-cran-hwriter r-cran-isoband r-cran-jquerylib 423s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 423s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr 423s r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv 423s r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar 423s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 423s r-cran-plogr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx 423s r-cran-progress r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 423s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 423s r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rjson r-cran-rlang 423s r-cran-rmarkdown r-cran-roxygen2 r-cran-rprojroot r-cran-rsqlite r-cran-sass 423s r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod 423s r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-testthat 423s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 423s r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun 423s r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils 423s tex-common texlive-base texlive-bibtex-extra texlive-binaries 423s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 423s 0 upgraded, 337 newly installed, 0 to remove and 0 not upgraded. 423s Need to get 481 MB of archives. 423s After this operation, 1469 MB of additional disk space will be used. 423s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 423s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 423s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 423s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 423s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 423s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 423s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 423s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 423s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 423s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 423s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 423s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 423s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 423s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 423s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 423s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 423s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 423s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 423s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 423s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 423s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 423s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 423s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 423s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 423s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 424s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 424s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 424s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 424s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 424s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 424s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 424s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 424s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 424s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 424s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 424s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 424s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 424s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 424s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 424s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 424s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 424s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 424s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 424s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 424s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 424s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 424s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 424s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 424s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 424s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 424s Get:51 http://ftpmaster.internal/ubuntu noble/universe amd64 hdf5-helpers amd64 1.10.10+repack-3ubuntu1 [15.5 kB] 424s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 424s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 424s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 424s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 424s Get:56 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 424s Get:57 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 424s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 424s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 424s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libsnappy1v5 amd64 1.1.10-1 [28.4 kB] 424s Get:61 http://ftpmaster.internal/ubuntu noble/universe amd64 libblosc1 amd64 1.21.5+ds-1 [36.5 kB] 424s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 424s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 424s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 424s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 424s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 424s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 424s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 424s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 424s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libcurl4-openssl-dev amd64 8.5.0-2ubuntu2 [446 kB] 424s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 424s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 424s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 424s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 424s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 424s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 424s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-cpp-103-1 amd64 1.10.10+repack-3ubuntu1 [128 kB] 424s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-fortran-102 amd64 1.10.10+repack-3ubuntu1 [86.4 kB] 424s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB] 424s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-fortran-100 amd64 1.10.10+repack-3ubuntu1 [32.5 kB] 424s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-cpp-100 amd64 1.10.10+repack-3ubuntu1 [11.0 kB] 424s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 424s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 424s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 424s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 424s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 424s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 424s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec-dev amd64 1.1.2-1 [19.5 kB] 424s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libssl-dev amd64 3.0.10-1ubuntu4 [2400 kB] 424s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-dev amd64 1.10.10+repack-3ubuntu1 [2826 kB] 424s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 424s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 424s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 424s Get:94 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 424s Get:95 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 424s Get:96 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 424s Get:97 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 424s Get:98 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 424s Get:99 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 424s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 424s Get:101 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 424s Get:102 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 424s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 424s Get:104 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 424s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 424s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 424s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 424s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 424s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 424s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 424s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 424s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 424s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 424s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 424s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 424s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 424s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 424s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 424s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 424s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 424s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 424s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 424s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 424s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 424s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 424s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 424s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 424s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 424s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 424s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 424s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 424s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 424s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 424s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 424s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 424s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 424s Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 424s Get:138 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 424s Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 424s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 424s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 424s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 424s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 424s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 424s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 424s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 424s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 424s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 424s Get:149 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 424s Get:150 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 424s Get:151 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 424s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 424s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 424s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 424s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 424s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 424s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 424s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 424s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 425s Get:160 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 425s Get:161 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 425s Get:162 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 425s Get:163 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 425s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 425s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 425s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 425s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 425s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 425s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 425s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 425s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 425s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 425s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 425s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 425s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 425s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 425s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 425s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 425s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 425s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 425s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 425s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 425s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 425s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 425s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 425s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 425s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 425s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 425s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 425s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 425s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 425s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 425s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 425s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 425s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 425s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 425s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 425s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 425s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 425s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 425s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 425s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 425s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 425s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 425s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 425s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 425s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 425s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 425s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 425s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 425s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 425s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 425s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 425s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 425s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 425s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 425s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 425s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-beachmat amd64 2.18.1+ds-1 [1562 kB] 425s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 425s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 425s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 425s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 425s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 425s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 425s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 425s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 425s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 425s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 425s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 425s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 425s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 425s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 425s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 425s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 425s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 425s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 425s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 425s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 425s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 425s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 425s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 425s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 425s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 425s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 425s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 425s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 425s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 425s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 425s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 425s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 425s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 425s Get:252 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 425s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 425s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 425s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 425s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 425s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 425s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 425s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 425s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 425s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 425s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 425s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 425s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 425s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 425s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 425s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 425s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 425s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 425s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 425s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 425s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 425s Get:273 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 425s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 425s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 425s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 425s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 426s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 426s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 426s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 426s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 426s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 426s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 426s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsematrixstats amd64 1.14.0+dfsg-1 [829 kB] 426s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedmatrixstats all 1.24.0+ds-1 [483 kB] 426s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 426s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 426s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-locfit amd64 1.5-9.8-1 [513 kB] 426s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 426s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 426s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 426s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 426s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 426s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 426s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 426s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 426s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 426s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 426s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 426s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 426s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 426s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpparmadillo amd64 0.12.8.0.0-1 [862 kB] 426s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-deseq2 amd64 1.42.0+dfsg-1 [1226 kB] 426s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 426s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 426s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 426s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 426s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-geneplotter all 1.80.0+dfsg-1 [1416 kB] 426s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 426s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genefilter amd64 1.84.0-1 [1123 kB] 426s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-dexseq all 1.48.0+dfsg-1 [464 kB] 426s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 426s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 426s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 426s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 426s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 426s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5lib amd64 1.24.2+dfsg-1 [96.2 kB] 426s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5filters amd64 1.14.1+dfsg-3 [136 kB] 426s Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5 amd64 2.46.1+dfsg-1 [808 kB] 426s Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-hdf5array amd64 1.30.1-1 [8759 kB] 426s Get:321 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-singlecellexperiment all 1.24.0+ds-1 [828 kB] 426s Get:322 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-glmgampoi amd64 1.14.3+dfsg-1 [1205 kB] 427s Get:323 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brew all 1.0-10-1 [77.7 kB] 427s Get:324 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 427s Get:325 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 427s Get:326 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 427s Get:327 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 427s Get:328 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 427s Get:329 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 427s Get:330 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 427s Get:331 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 427s Get:332 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 427s Get:333 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 427s Get:334 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 427s Get:335 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-roxygen2 amd64 7.3.1-1 [712 kB] 427s Get:336 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 427s Get:337 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 427s Preconfiguring packages ... 427s Fetched 481 MB in 3s (141 MB/s) 427s Selecting previously unselected package libc-dev-bin. 428s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 428s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 428s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 428s Selecting previously unselected package linux-libc-dev:amd64. 428s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 428s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 428s Selecting previously unselected package libcrypt-dev:amd64. 428s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 428s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 428s Selecting previously unselected package libtirpc-dev:amd64. 428s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 428s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 428s Selecting previously unselected package libnsl-dev:amd64. 428s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 428s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 428s Selecting previously unselected package rpcsvc-proto. 428s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 428s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 428s Selecting previously unselected package libc6-dev:amd64. 428s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 428s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 428s Selecting previously unselected package libisl23:amd64. 428s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 428s Unpacking libisl23:amd64 (0.26-3) ... 428s Selecting previously unselected package libmpc3:amd64. 428s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 428s Unpacking libmpc3:amd64 (1.3.1-1) ... 428s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 428s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 428s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 429s Selecting previously unselected package cpp-13. 429s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 429s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 429s Selecting previously unselected package cpp-x86-64-linux-gnu. 429s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 429s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 429s Selecting previously unselected package cpp. 429s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 429s Unpacking cpp (4:13.2.0-7ubuntu1) ... 429s Selecting previously unselected package libcc1-0:amd64. 429s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 429s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 429s Selecting previously unselected package libgomp1:amd64. 429s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 429s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 429s Selecting previously unselected package libitm1:amd64. 429s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 429s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 429s Selecting previously unselected package libatomic1:amd64. 429s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 429s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 429s Selecting previously unselected package libasan8:amd64. 429s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 429s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 429s Selecting previously unselected package liblsan0:amd64. 429s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 429s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 429s Selecting previously unselected package libtsan2:amd64. 429s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 429s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 429s Selecting previously unselected package libubsan1:amd64. 429s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 429s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 429s Selecting previously unselected package libhwasan0:amd64. 429s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 429s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 429s Selecting previously unselected package libquadmath0:amd64. 429s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 429s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 429s Selecting previously unselected package libgcc-13-dev:amd64. 429s 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libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 431s Selecting previously unselected package fontconfig. 431s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 431s Unpacking fontconfig (2.15.0-1ubuntu1) ... 431s Selecting previously unselected package fonts-font-awesome. 431s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 431s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 431s Selecting previously unselected package fonts-glyphicons-halflings. 431s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 431s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 431s Selecting previously unselected package fonts-lmodern. 431s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 431s Unpacking fonts-lmodern (2.005-1) ... 431s Selecting previously unselected package fonts-mathjax. 431s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 431s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 431s Selecting previously unselected package libgfortran5:amd64. 431s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 431s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 431s Selecting previously unselected package libgfortran-13-dev:amd64. 431s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 431s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 431s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 431s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 431s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 431s Selecting previously unselected package gfortran-13. 431s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 431s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 431s Selecting previously unselected package gfortran-x86-64-linux-gnu. 431s Preparing to unpack .../048-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 431s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 431s Selecting previously unselected package gfortran. 431s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 431s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 431s Selecting previously unselected package hdf5-helpers. 431s Preparing to unpack .../050-hdf5-helpers_1.10.10+repack-3ubuntu1_amd64.deb ... 431s Unpacking hdf5-helpers (1.10.10+repack-3ubuntu1) ... 431s Selecting previously unselected package icu-devtools. 431s Preparing to unpack .../051-icu-devtools_74.2-1ubuntu1_amd64.deb ... 431s Unpacking icu-devtools (74.2-1ubuntu1) ... 431s Selecting previously unselected package javascript-common. 431s Preparing to unpack .../052-javascript-common_11+nmu1_all.deb ... 431s Unpacking javascript-common (11+nmu1) ... 432s Selecting previously unselected package libaec0:amd64. 432s Preparing to unpack .../053-libaec0_1.1.2-1_amd64.deb ... 432s Unpacking libaec0:amd64 (1.1.2-1) ... 432s Selecting previously unselected package libio-string-perl. 432s Preparing to unpack .../054-libio-string-perl_1.08-4_all.deb ... 432s Unpacking libio-string-perl (1.08-4) ... 432s Selecting previously unselected package liblatex-tounicode-perl. 432s Preparing to unpack .../055-liblatex-tounicode-perl_0.54-2_all.deb ... 432s Unpacking liblatex-tounicode-perl (0.54-2) ... 432s Selecting previously unselected package libbibtex-parser-perl. 432s Preparing to unpack .../056-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 432s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 432s Selecting previously unselected package libblas3:amd64. 432s Preparing to unpack .../057-libblas3_3.12.0-3_amd64.deb ... 432s Unpacking libblas3:amd64 (3.12.0-3) ... 432s Selecting previously unselected package libblas-dev:amd64. 432s Preparing to unpack .../058-libblas-dev_3.12.0-3_amd64.deb ... 432s Unpacking libblas-dev:amd64 (3.12.0-3) ... 432s Selecting previously unselected package libsnappy1v5:amd64. 432s Preparing to unpack .../059-libsnappy1v5_1.1.10-1_amd64.deb ... 432s Unpacking libsnappy1v5:amd64 (1.1.10-1) ... 432s Selecting previously unselected package libblosc1:amd64. 432s Preparing to unpack .../060-libblosc1_1.21.5+ds-1_amd64.deb ... 432s Unpacking libblosc1:amd64 (1.21.5+ds-1) ... 432s Selecting previously unselected package libboost1.83-dev:amd64. 432s Preparing to unpack .../061-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 432s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 434s Selecting previously unselected package libboost-dev:amd64. 434s Preparing to unpack .../062-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 434s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ... 434s Selecting previously unselected package libbz2-dev:amd64. 434s Preparing to unpack .../063-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 434s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 434s Selecting previously unselected package libpixman-1-0:amd64. 434s Preparing to unpack .../064-libpixman-1-0_0.42.2-1_amd64.deb ... 434s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 434s Selecting previously unselected package libxcb-render0:amd64. 434s Preparing to unpack .../065-libxcb-render0_1.15-1_amd64.deb ... 434s Unpacking libxcb-render0:amd64 (1.15-1) ... 434s Selecting previously unselected package libxcb-shm0:amd64. 434s Preparing to unpack .../066-libxcb-shm0_1.15-1_amd64.deb ... 434s Unpacking libxcb-shm0:amd64 (1.15-1) ... 434s Selecting previously unselected package libxrender1:amd64. 434s Preparing to unpack .../067-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 434s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 434s Selecting previously unselected package libcairo2:amd64. 434s Preparing to unpack .../068-libcairo2_1.18.0-1_amd64.deb ... 434s Unpacking libcairo2:amd64 (1.18.0-1) ... 434s Selecting previously unselected package libcurl4-openssl-dev:amd64. 434s Preparing to unpack .../069-libcurl4-openssl-dev_8.5.0-2ubuntu2_amd64.deb ... 434s Unpacking libcurl4-openssl-dev:amd64 (8.5.0-2ubuntu2) ... 434s Selecting previously unselected package libdatrie1:amd64. 434s Preparing to unpack .../070-libdatrie1_0.2.13-3_amd64.deb ... 434s Unpacking libdatrie1:amd64 (0.2.13-3) ... 434s Selecting previously unselected package libdeflate0:amd64. 434s Preparing to unpack .../071-libdeflate0_1.19-1_amd64.deb ... 434s Unpacking libdeflate0:amd64 (1.19-1) ... 434s Selecting previously unselected package libgraphite2-3:amd64. 434s Preparing to unpack .../072-libgraphite2-3_1.3.14-2_amd64.deb ... 434s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 434s Selecting previously unselected package libharfbuzz0b:amd64. 434s Preparing to unpack .../073-libharfbuzz0b_8.3.0-2_amd64.deb ... 434s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 434s Selecting previously unselected package libsz2:amd64. 434s Preparing to unpack .../074-libsz2_1.1.2-1_amd64.deb ... 434s Unpacking libsz2:amd64 (1.1.2-1) ... 434s Selecting previously unselected package libhdf5-103-1:amd64. 434s Preparing to unpack .../075-libhdf5-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 434s Unpacking libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 434s Selecting previously unselected package libhdf5-cpp-103-1:amd64. 434s Preparing to unpack .../076-libhdf5-cpp-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 434s Unpacking libhdf5-cpp-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 435s Selecting previously unselected package libhdf5-fortran-102:amd64. 435s Preparing to unpack .../077-libhdf5-fortran-102_1.10.10+repack-3ubuntu1_amd64.deb ... 435s Unpacking libhdf5-fortran-102:amd64 (1.10.10+repack-3ubuntu1) ... 435s Selecting previously unselected package libhdf5-hl-100:amd64. 435s Preparing to unpack .../078-libhdf5-hl-100_1.10.10+repack-3ubuntu1_amd64.deb ... 435s Unpacking libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 435s Selecting previously unselected package libhdf5-hl-fortran-100:amd64. 435s Preparing to unpack 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Selecting previously unselected package libjpeg8:amd64. 435s Preparing to unpack .../084-libjpeg8_8c-2ubuntu11_amd64.deb ... 435s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 435s Selecting previously unselected package libjpeg8-dev:amd64. 435s Preparing to unpack .../085-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 435s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 435s Selecting previously unselected package libjpeg-dev:amd64. 435s Preparing to unpack .../086-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 435s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 435s Selecting previously unselected package libaec-dev:amd64. 435s Preparing to unpack .../087-libaec-dev_1.1.2-1_amd64.deb ... 435s Unpacking libaec-dev:amd64 (1.1.2-1) ... 435s Selecting previously unselected package libssl-dev:amd64. 435s Preparing to unpack .../088-libssl-dev_3.0.10-1ubuntu4_amd64.deb ... 435s Unpacking libssl-dev:amd64 (3.0.10-1ubuntu4) ... 435s Selecting previously unselected package libhdf5-dev. 435s Preparing to unpack .../089-libhdf5-dev_1.10.10+repack-3ubuntu1_amd64.deb ... 435s Unpacking libhdf5-dev (1.10.10+repack-3ubuntu1) ... 435s Selecting previously unselected package x11-common. 435s Preparing to unpack .../090-x11-common_1%3a7.7+23ubuntu2_all.deb ... 435s Unpacking x11-common (1:7.7+23ubuntu2) ... 435s Selecting previously unselected package libice6:amd64. 435s Preparing to unpack .../091-libice6_2%3a1.0.10-1build2_amd64.deb ... 435s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 435s Selecting previously unselected package libicu-dev:amd64. 435s Preparing to unpack .../092-libicu-dev_74.2-1ubuntu1_amd64.deb ... 435s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 435s Selecting previously unselected package libjs-bootstrap. 435s Preparing to unpack .../093-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 435s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 435s Selecting previously unselected package libjs-popper.js. 435s Preparing to unpack .../094-libjs-popper.js_1.16.1+ds-6_all.deb ... 436s Unpacking libjs-popper.js (1.16.1+ds-6) ... 436s Selecting previously unselected package libjs-bootstrap4. 436s Preparing to unpack .../095-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 436s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 436s Selecting previously unselected package libjs-d3. 436s Preparing to unpack .../096-libjs-d3_3.5.17-4_all.deb ... 436s Unpacking libjs-d3 (3.5.17-4) ... 436s Selecting previously unselected package libjs-es5-shim. 436s Preparing to unpack .../097-libjs-es5-shim_4.6.7-2_all.deb ... 436s Unpacking libjs-es5-shim (4.6.7-2) ... 436s Selecting previously unselected package libjs-highlight.js. 436s Preparing to unpack .../098-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 436s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 436s Selecting previously unselected package libjs-jquery. 436s Preparing to unpack .../099-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 436s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 436s Selecting previously unselected package libjs-jquery-datatables. 436s Preparing to unpack .../100-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 436s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 436s Selecting previously unselected package libjs-sifter.js. 436s Preparing to unpack .../101-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 436s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 436s Selecting previously unselected package libjs-microplugin.js. 436s Preparing to unpack .../102-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 436s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 436s Selecting previously unselected package libjs-jquery-selectize.js. 436s Preparing to unpack .../103-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 436s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 436s Selecting previously unselected package libjs-jquery-ui. 436s Preparing to unpack .../104-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 436s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 436s Selecting previously unselected package libjs-json. 436s Preparing to unpack .../105-libjs-json_0~20221030+~1.0.8-1_all.deb ... 436s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 436s Selecting previously unselected package libjs-lunr. 436s Preparing to unpack .../106-libjs-lunr_2.3.9~dfsg-2_all.deb ... 436s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 436s Selecting previously unselected package libjs-prettify. 436s Preparing to unpack .../107-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 436s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 436s Selecting previously unselected package libkpathsea6:amd64. 436s Preparing to unpack .../108-libkpathsea6_2023.20230311.66589-9_amd64.deb ... 436s Unpacking libkpathsea6:amd64 (2023.20230311.66589-9) ... 436s Selecting previously unselected package liblapack3:amd64. 436s Preparing to unpack .../109-liblapack3_3.12.0-3_amd64.deb ... 436s Unpacking liblapack3:amd64 (3.12.0-3) ... 436s Selecting previously unselected package liblapack-dev:amd64. 436s Preparing to unpack .../110-liblapack-dev_3.12.0-3_amd64.deb ... 436s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 436s Selecting previously unselected package liblerc4:amd64. 436s Preparing to unpack .../111-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 436s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 436s Selecting previously unselected package liblua5.4-0:amd64. 436s Preparing to unpack .../112-liblua5.4-0_5.4.6-3_amd64.deb ... 436s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 436s Selecting previously unselected package libncurses-dev:amd64. 436s Preparing to unpack .../113-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 436s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 436s Selecting previously unselected package libthai-data. 436s Preparing to unpack .../114-libthai-data_0.1.29-2_all.deb ... 436s Unpacking libthai-data (0.1.29-2) ... 436s Selecting previously unselected package libthai0:amd64. 436s Preparing to unpack .../115-libthai0_0.1.29-2_amd64.deb ... 436s Unpacking libthai0:amd64 (0.1.29-2) ... 436s Selecting previously unselected package libpango-1.0-0:amd64. 436s Preparing to unpack .../116-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 436s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 437s Selecting previously unselected package libpangoft2-1.0-0:amd64. 437s Preparing to unpack .../117-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 437s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 437s Selecting previously unselected package libpangocairo-1.0-0:amd64. 437s Preparing to unpack .../118-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 437s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 437s Selecting previously unselected package libpaper1:amd64. 437s Preparing to unpack .../119-libpaper1_1.1.29_amd64.deb ... 437s Unpacking libpaper1:amd64 (1.1.29) ... 437s Selecting previously unselected package libpaper-utils. 437s Preparing to unpack .../120-libpaper-utils_1.1.29_amd64.deb ... 437s Unpacking libpaper-utils (1.1.29) ... 437s Selecting previously unselected package libpcre2-16-0:amd64. 437s Preparing to unpack .../121-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 437s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 437s Selecting previously unselected package libpcre2-32-0:amd64. 437s Preparing to unpack .../122-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 437s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 437s Selecting previously unselected package libpcre2-posix3:amd64. 437s Preparing to unpack .../123-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 437s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 437s Selecting previously unselected package libpcre2-dev:amd64. 437s Preparing to unpack .../124-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 437s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 437s Selecting previously unselected package libpkgconf3:amd64. 437s Preparing to unpack .../125-libpkgconf3_1.8.1-2_amd64.deb ... 437s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 437s Selecting previously unselected package libpng-dev:amd64. 437s Preparing to unpack .../126-libpng-dev_1.6.43-1_amd64.deb ... 437s Unpacking libpng-dev:amd64 (1.6.43-1) ... 437s Selecting previously unselected package libpotrace0:amd64. 437s Preparing to unpack .../127-libpotrace0_1.16-2_amd64.deb ... 437s Unpacking libpotrace0:amd64 (1.16-2) ... 437s Selecting previously unselected package libptexenc1:amd64. 437s Preparing to unpack .../128-libptexenc1_2023.20230311.66589-9_amd64.deb ... 437s Unpacking libptexenc1:amd64 (2023.20230311.66589-9) ... 437s Selecting previously unselected package libreadline-dev:amd64. 437s Preparing to unpack .../129-libreadline-dev_8.2-3_amd64.deb ... 437s Unpacking libreadline-dev:amd64 (8.2-3) ... 437s Selecting previously unselected package libsharpyuv0:amd64. 437s Preparing to unpack .../130-libsharpyuv0_1.3.2-0.4_amd64.deb ... 437s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 437s Selecting previously unselected package libsm6:amd64. 437s Preparing to unpack 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Selecting previously unselected package libxt6:amd64. 437s Preparing to unpack .../142-libxt6_1%3a1.2.1-1.1_amd64.deb ... 437s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 437s Selecting previously unselected package libxmu6:amd64. 437s Preparing to unpack .../143-libxmu6_2%3a1.1.3-3_amd64.deb ... 437s Unpacking libxmu6:amd64 (2:1.1.3-3) ... 437s Selecting previously unselected package libxpm4:amd64. 437s Preparing to unpack .../144-libxpm4_1%3a3.5.17-1_amd64.deb ... 437s Unpacking libxpm4:amd64 (1:3.5.17-1) ... 438s Selecting previously unselected package libxaw7:amd64. 438s Preparing to unpack .../145-libxaw7_2%3a1.0.14-1_amd64.deb ... 438s Unpacking libxaw7:amd64 (2:1.0.14-1) ... 438s Selecting previously unselected package libxi6:amd64. 438s Preparing to unpack .../146-libxi6_2%3a1.8.1-1_amd64.deb ... 438s Unpacking libxi6:amd64 (2:1.8.1-1) ... 438s Selecting previously unselected package libzzip-0-13:amd64. 438s Preparing to unpack .../147-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... 438s Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 438s Selecting previously unselected package zip. 438s Preparing to unpack .../148-zip_3.0-13_amd64.deb ... 438s Unpacking zip (3.0-13) ... 438s Selecting previously unselected package unzip. 438s Preparing to unpack .../149-unzip_6.0-28ubuntu3_amd64.deb ... 438s Unpacking unzip (6.0-28ubuntu3) ... 438s Selecting previously unselected package xdg-utils. 438s Preparing to unpack .../150-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 438s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 438s Selecting previously unselected package r-base-core. 438s Preparing to unpack .../151-r-base-core_4.3.2-1build1_amd64.deb ... 438s Unpacking r-base-core (4.3.2-1build1) ... 438s Selecting previously unselected package r-cran-littler. 438s Preparing to unpack .../152-r-cran-littler_0.3.19-1_amd64.deb ... 438s Unpacking r-cran-littler (0.3.19-1) ... 438s Selecting previously unselected package littler. 438s Preparing to unpack .../153-littler_0.3.19-1_all.deb ... 438s Unpacking littler (0.3.19-1) ... 438s Selecting previously unselected package node-bootstrap-sass. 438s Preparing to unpack .../154-node-bootstrap-sass_3.4.3-2_all.deb ... 438s Unpacking node-bootstrap-sass (3.4.3-2) ... 438s Selecting previously unselected package node-html5shiv. 438s Preparing to unpack .../155-node-html5shiv_3.7.3+dfsg-5_all.deb ... 438s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 438s Selecting previously unselected package node-normalize.css. 438s Preparing to unpack .../156-node-normalize.css_8.0.1-5_all.deb ... 438s Unpacking node-normalize.css (8.0.1-5) ... 438s Selecting previously unselected package pandoc-data. 438s Preparing to unpack .../157-pandoc-data_3.1.3-1_all.deb ... 438s Unpacking pandoc-data (3.1.3-1) ... 438s Selecting previously unselected package pandoc. 438s Preparing to unpack .../158-pandoc_3.1.3+ds-2_amd64.deb ... 438s Unpacking pandoc (3.1.3+ds-2) ... 439s Selecting previously unselected package pkgconf-bin. 439s Preparing to unpack .../159-pkgconf-bin_1.8.1-2_amd64.deb ... 439s Unpacking pkgconf-bin (1.8.1-2) ... 439s Selecting previously unselected package pkgconf:amd64. 439s Preparing to unpack .../160-pkgconf_1.8.1-2_amd64.deb ... 439s Unpacking pkgconf:amd64 (1.8.1-2) ... 439s Selecting previously unselected package pkg-config:amd64. 439s Preparing to unpack .../161-pkg-config_1.8.1-2_amd64.deb ... 439s Unpacking pkg-config:amd64 (1.8.1-2) ... 440s Selecting previously unselected package liblzma-dev:amd64. 440s Preparing to unpack .../162-liblzma-dev_5.4.5-0.3_amd64.deb ... 440s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 440s Selecting previously unselected package r-base-dev. 440s Preparing to unpack .../163-r-base-dev_4.3.2-1build1_all.deb ... 440s Unpacking r-base-dev (4.3.2-1build1) ... 440s Selecting previously unselected package pkg-r-autopkgtest. 440s Preparing to unpack .../164-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 440s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 440s Selecting previously unselected package r-bioc-biocgenerics. 440s Preparing to unpack .../165-r-bioc-biocgenerics_0.48.1-2_all.deb ... 440s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 440s Selecting previously unselected package r-bioc-biobase. 440s Preparing to unpack .../166-r-bioc-biobase_2.62.0-1_amd64.deb ... 440s Unpacking r-bioc-biobase (2.62.0-1) ... 440s Selecting previously unselected package r-bioc-s4vectors. 440s Preparing to unpack .../167-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 440s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 440s Selecting previously unselected package r-bioc-iranges. 440s Preparing to unpack .../168-r-bioc-iranges_2.36.0-1_amd64.deb ... 440s Unpacking r-bioc-iranges (2.36.0-1) ... 440s Selecting previously unselected package r-cran-dbi. 440s Preparing to unpack .../169-r-cran-dbi_1.2.2-1_all.deb ... 440s Unpacking r-cran-dbi (1.2.2-1) ... 440s Selecting previously unselected package r-cran-bit. 440s Preparing to unpack .../170-r-cran-bit_4.0.5-1_amd64.deb ... 440s Unpacking r-cran-bit (4.0.5-1) ... 440s Selecting previously unselected package r-cran-bit64. 440s Preparing to unpack .../171-r-cran-bit64_4.0.5-1_amd64.deb ... 440s Unpacking r-cran-bit64 (4.0.5-1) ... 440s Selecting previously unselected package r-cran-rlang. 440s Preparing to unpack .../172-r-cran-rlang_1.1.3-1_amd64.deb ... 440s Unpacking r-cran-rlang (1.1.3-1) ... 440s Selecting previously unselected package r-cran-cli. 440s Preparing to unpack .../173-r-cran-cli_3.6.2-1_amd64.deb ... 440s Unpacking r-cran-cli (3.6.2-1) ... 440s Selecting previously unselected package r-cran-glue. 440s Preparing to unpack .../174-r-cran-glue_1.7.0-1_amd64.deb ... 440s Unpacking r-cran-glue (1.7.0-1) ... 440s Selecting previously unselected package r-cran-lifecycle. 440s Preparing to unpack .../175-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 440s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 440s Selecting previously unselected package r-cran-vctrs. 440s Preparing to unpack .../176-r-cran-vctrs_0.6.5-1_amd64.deb ... 440s Unpacking r-cran-vctrs (0.6.5-1) ... 440s Selecting previously unselected package r-cran-blob. 440s Preparing to unpack .../177-r-cran-blob_1.2.4-1_all.deb ... 440s Unpacking r-cran-blob (1.2.4-1) ... 440s Selecting previously unselected package r-cran-fastmap. 440s Preparing to unpack .../178-r-cran-fastmap_1.1.1-1_amd64.deb ... 440s Unpacking r-cran-fastmap (1.1.1-1) ... 440s Selecting previously unselected package r-cran-cachem. 440s Preparing to unpack .../179-r-cran-cachem_1.0.8-1_amd64.deb ... 440s Unpacking r-cran-cachem (1.0.8-1) ... 440s Selecting previously unselected package r-cran-memoise. 440s Preparing to unpack .../180-r-cran-memoise_2.0.1-1_all.deb ... 440s Unpacking r-cran-memoise (2.0.1-1) ... 440s Selecting previously unselected package r-cran-pkgconfig. 440s Preparing to unpack .../181-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 440s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 440s Selecting previously unselected package r-cran-plogr. 440s Preparing to unpack .../182-r-cran-plogr_0.2.0-3build1_all.deb ... 440s Unpacking r-cran-plogr (0.2.0-3build1) ... 440s Selecting previously unselected package r-cran-cpp11. 440s Preparing to unpack .../183-r-cran-cpp11_0.4.7-1_all.deb ... 440s Unpacking r-cran-cpp11 (0.4.7-1) ... 440s Selecting previously unselected package r-cran-rsqlite. 440s Preparing to unpack .../184-r-cran-rsqlite_2.3.4-1_amd64.deb ... 440s Unpacking r-cran-rsqlite (2.3.4-1) ... 440s Selecting previously unselected package r-cran-curl. 440s Preparing to unpack .../185-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 440s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 441s Selecting previously unselected package r-cran-jsonlite. 441s Preparing to unpack .../186-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 441s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 441s Selecting previously unselected package r-cran-mime. 441s Preparing to unpack .../187-r-cran-mime_0.12-1_amd64.deb ... 441s Unpacking r-cran-mime (0.12-1) ... 441s Selecting previously unselected package r-cran-sys. 441s Preparing to unpack .../188-r-cran-sys_3.4.2-1_amd64.deb ... 441s Unpacking r-cran-sys (3.4.2-1) ... 441s Selecting previously unselected package r-cran-askpass. 441s Preparing to unpack .../189-r-cran-askpass_1.2.0-1_amd64.deb ... 441s Unpacking r-cran-askpass (1.2.0-1) ... 441s Selecting previously unselected package r-cran-openssl. 441s Preparing to unpack .../190-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 441s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 441s Selecting previously unselected package r-cran-r6. 441s Preparing to unpack .../191-r-cran-r6_2.5.1-1_all.deb ... 441s Unpacking r-cran-r6 (2.5.1-1) ... 441s Selecting previously unselected package r-cran-httr. 441s Preparing to unpack .../192-r-cran-httr_1.4.7+dfsg-1_all.deb ... 441s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 441s Selecting previously unselected package r-cran-png. 441s Preparing to unpack .../193-r-cran-png_0.1-8-1_amd64.deb ... 441s Unpacking r-cran-png (0.1-8-1) ... 441s Selecting previously unselected package r-bioc-zlibbioc. 441s Preparing to unpack .../194-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 441s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 441s Selecting previously unselected package r-bioc-xvector. 441s Preparing to unpack .../195-r-bioc-xvector_0.42.0-1_amd64.deb ... 441s Unpacking r-bioc-xvector (0.42.0-1) ... 441s Selecting previously unselected package r-cran-bitops. 441s Preparing to unpack .../196-r-cran-bitops_1.0-7-1_amd64.deb ... 441s Unpacking r-cran-bitops (1.0-7-1) ... 441s Selecting previously unselected package r-cran-rcurl. 441s Preparing to unpack .../197-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 441s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 441s Selecting previously unselected package r-bioc-genomeinfodbdata. 441s Preparing to unpack .../198-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 441s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 441s Selecting previously unselected package r-bioc-genomeinfodb. 441s Preparing to unpack .../199-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 441s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 441s Selecting previously unselected package r-cran-crayon. 441s Preparing to unpack .../200-r-cran-crayon_1.5.2-1_all.deb ... 441s Unpacking r-cran-crayon (1.5.2-1) ... 441s Selecting previously unselected package r-bioc-biostrings. 441s Preparing to unpack .../201-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 441s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 441s Selecting previously unselected package r-bioc-keggrest. 441s Preparing to unpack .../202-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 441s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 441s Selecting previously unselected package r-bioc-annotationdbi. 441s Preparing to unpack .../203-r-bioc-annotationdbi_1.64.1-1_all.deb ... 441s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 441s Selecting previously unselected package r-cran-xml. 441s Preparing to unpack .../204-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 441s Unpacking r-cran-xml (3.99-0.16.1-1) ... 441s Selecting previously unselected package r-cran-xtable. 441s Preparing to unpack .../205-r-cran-xtable_1%3a1.8-4-2_all.deb ... 441s Unpacking r-cran-xtable (1:1.8-4-2) ... 442s Selecting previously unselected package r-bioc-annotate. 442s Preparing to unpack .../206-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 442s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 442s Selecting previously unselected package r-cran-lattice. 442s Preparing to unpack .../207-r-cran-lattice_0.22-5-1_amd64.deb ... 442s Unpacking r-cran-lattice (0.22-5-1) ... 442s Selecting previously unselected package r-cran-matrix. 442s Preparing to unpack .../208-r-cran-matrix_1.6-5-1_amd64.deb ... 442s Unpacking r-cran-matrix (1.6-5-1) ... 442s Selecting previously unselected package r-cran-matrixstats. 442s Preparing to unpack .../209-r-cran-matrixstats_1.2.0-1_amd64.deb ... 442s Unpacking r-cran-matrixstats (1.2.0-1) ... 442s Selecting previously unselected package r-bioc-matrixgenerics. 442s Preparing to unpack .../210-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 442s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 442s Selecting previously unselected package r-cran-abind. 442s Preparing to unpack .../211-r-cran-abind_1.4-5-2_all.deb ... 442s Unpacking r-cran-abind (1.4-5-2) ... 442s Selecting previously unselected package r-bioc-s4arrays. 442s Preparing to unpack .../212-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 442s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 442s Selecting previously unselected package r-bioc-sparsearray. 442s Preparing to unpack .../213-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 442s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 442s Selecting previously unselected package r-bioc-delayedarray. 442s Preparing to unpack .../214-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 442s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 442s Selecting previously unselected package r-cran-pkgkitten. 442s Preparing to unpack .../215-r-cran-pkgkitten_0.2.3-1_all.deb ... 442s Unpacking r-cran-pkgkitten (0.2.3-1) ... 442s Selecting previously unselected package r-cran-rcpp. 442s Preparing to unpack .../216-r-cran-rcpp_1.0.12-1_amd64.deb ... 442s Unpacking r-cran-rcpp (1.0.12-1) ... 442s Selecting previously unselected package r-bioc-beachmat. 442s Preparing to unpack .../217-r-bioc-beachmat_2.18.1+ds-1_amd64.deb ... 442s Unpacking r-bioc-beachmat (2.18.1+ds-1) ... 442s Selecting previously unselected package r-cran-generics. 442s Preparing to unpack .../218-r-cran-generics_0.1.3-1_all.deb ... 442s Unpacking r-cran-generics (0.1.3-1) ... 442s Selecting previously unselected package r-cran-magrittr. 442s Preparing to unpack .../219-r-cran-magrittr_2.0.3-1_amd64.deb ... 442s Unpacking r-cran-magrittr (2.0.3-1) ... 442s Selecting previously unselected package r-cran-fansi. 442s Preparing to unpack .../220-r-cran-fansi_1.0.5-1_amd64.deb ... 442s Unpacking r-cran-fansi (1.0.5-1) ... 442s Selecting previously unselected package r-cran-utf8. 442s Preparing to unpack .../221-r-cran-utf8_1.2.4-1_amd64.deb ... 442s Unpacking r-cran-utf8 (1.2.4-1) ... 442s Selecting previously unselected package r-cran-pillar. 442s Preparing to unpack .../222-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 442s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 442s Selecting previously unselected package r-cran-tibble. 442s Preparing to unpack .../223-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 442s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 443s Selecting previously unselected package r-cran-withr. 443s Preparing to unpack .../224-r-cran-withr_2.5.0-1_all.deb ... 443s Unpacking r-cran-withr (2.5.0-1) ... 443s Selecting previously unselected package r-cran-tidyselect. 443s Preparing to unpack .../225-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 443s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 443s Selecting previously unselected package r-cran-dplyr. 443s Preparing to unpack .../226-r-cran-dplyr_1.1.4-1_amd64.deb ... 443s Unpacking r-cran-dplyr (1.1.4-1) ... 443s Selecting previously unselected package r-cran-purrr. 443s Preparing to unpack .../227-r-cran-purrr_1.0.2-1_amd64.deb ... 443s Unpacking r-cran-purrr (1.0.2-1) ... 443s Selecting previously unselected package r-cran-stringi. 443s Preparing to unpack .../228-r-cran-stringi_1.8.3-1_amd64.deb ... 443s Unpacking r-cran-stringi (1.8.3-1) ... 443s Selecting previously unselected package r-cran-stringr. 443s Preparing to unpack .../229-r-cran-stringr_1.5.1-1_all.deb ... 443s Unpacking r-cran-stringr (1.5.1-1) ... 443s Selecting previously unselected package r-cran-tidyr. 443s Preparing to unpack .../230-r-cran-tidyr_1.3.1-1_amd64.deb ... 443s Unpacking r-cran-tidyr (1.3.1-1) ... 443s Selecting previously unselected package r-cran-dbplyr. 443s Preparing to unpack .../231-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 443s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 443s Selecting previously unselected package r-cran-filelock. 443s Preparing to unpack .../232-r-cran-filelock_1.0.3-1_amd64.deb ... 443s Unpacking r-cran-filelock (1.0.3-1) ... 443s Selecting previously unselected package r-bioc-biocfilecache. 443s Preparing to unpack .../233-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 443s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 443s Selecting previously unselected package r-bioc-biocio. 443s Preparing to unpack .../234-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 443s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 443s Selecting previously unselected package r-cran-formatr. 443s Preparing to unpack .../235-r-cran-formatr_1.14-1_all.deb ... 443s Unpacking r-cran-formatr (1.14-1) ... 443s Selecting previously unselected package r-cran-lambda.r. 443s Preparing to unpack .../236-r-cran-lambda.r_1.2.4-2build1_all.deb ... 443s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 443s Selecting previously unselected package r-cran-futile.options. 443s Preparing to unpack .../237-r-cran-futile.options_1.0.1-3build1_all.deb ... 443s Unpacking r-cran-futile.options (1.0.1-3build1) ... 443s Selecting previously unselected package r-cran-futile.logger. 443s Preparing to unpack .../238-r-cran-futile.logger_1.4.3-4build1_all.deb ... 443s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 443s Selecting previously unselected package r-cran-snow. 443s Preparing to unpack .../239-r-cran-snow_1%3a0.4.4-2_all.deb ... 443s Unpacking r-cran-snow (1:0.4.4-2) ... 443s Selecting previously unselected package r-cran-codetools. 443s Preparing to unpack .../240-r-cran-codetools_0.2-19-1_all.deb ... 443s Unpacking r-cran-codetools (0.2-19-1) ... 443s Selecting previously unselected package r-cran-bh. 443s Preparing to unpack .../241-r-cran-bh_1.84.0-1_all.deb ... 443s Unpacking r-cran-bh (1.84.0-1) ... 443s Selecting previously unselected package r-bioc-biocparallel. 443s Preparing to unpack .../242-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 443s Unpacking r-bioc-biocparallel (1.36.0-1) ... 443s Selecting previously unselected package r-cran-base64enc. 443s Preparing to unpack .../243-r-cran-base64enc_0.1-3-3_amd64.deb ... 443s Unpacking r-cran-base64enc (0.1-3-3) ... 443s Selecting previously unselected package r-cran-digest. 443s Preparing to unpack .../244-r-cran-digest_0.6.34-1_amd64.deb ... 443s Unpacking r-cran-digest (0.6.34-1) ... 443s Selecting previously unselected package r-cran-ellipsis. 443s Preparing to unpack .../245-r-cran-ellipsis_0.3.2-2_amd64.deb ... 443s Unpacking r-cran-ellipsis (0.3.2-2) ... 443s Selecting previously unselected package r-cran-htmltools. 443s Preparing to unpack .../246-r-cran-htmltools_0.5.7-1_amd64.deb ... 443s Unpacking r-cran-htmltools (0.5.7-1) ... 443s Selecting previously unselected package r-cran-evaluate. 444s Preparing to unpack .../247-r-cran-evaluate_0.23-1_all.deb ... 444s Unpacking r-cran-evaluate (0.23-1) ... 444s Selecting previously unselected package r-cran-xfun. 444s Preparing to unpack .../248-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 444s Unpacking r-cran-xfun (0.41+dfsg-1) ... 444s Selecting previously unselected package r-cran-highr. 444s Preparing to unpack .../249-r-cran-highr_0.10+dfsg-1_all.deb ... 444s Unpacking r-cran-highr (0.10+dfsg-1) ... 444s Selecting previously unselected package r-cran-yaml. 444s Preparing to unpack .../250-r-cran-yaml_2.3.8-1_amd64.deb ... 444s Unpacking r-cran-yaml (2.3.8-1) ... 444s Selecting previously unselected package libjs-mathjax. 444s Preparing to unpack .../251-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 444s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 444s Selecting previously unselected package r-cran-knitr. 444s Preparing to unpack .../252-r-cran-knitr_1.45+dfsg-1_all.deb ... 444s Unpacking r-cran-knitr (1.45+dfsg-1) ... 444s Selecting previously unselected package r-cran-jquerylib. 445s Preparing to unpack .../253-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 445s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 445s Selecting previously unselected package r-cran-fs. 445s Preparing to unpack .../254-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 445s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 445s Selecting previously unselected package r-cran-rappdirs. 445s Preparing to unpack .../255-r-cran-rappdirs_0.3.3-1_amd64.deb ... 445s Unpacking r-cran-rappdirs (0.3.3-1) ... 445s Selecting previously unselected package r-cran-sass. 445s Preparing to unpack .../256-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 445s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 445s Selecting previously unselected package r-cran-bslib. 445s Preparing to unpack .../257-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 445s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 445s Selecting previously unselected package r-cran-fontawesome. 445s Preparing to unpack .../258-r-cran-fontawesome_0.5.2-1_all.deb ... 445s Unpacking r-cran-fontawesome (0.5.2-1) ... 445s Selecting previously unselected package r-cran-tinytex. 445s Preparing to unpack .../259-r-cran-tinytex_0.49-1_all.deb ... 445s Unpacking r-cran-tinytex (0.49-1) ... 445s Selecting previously unselected package libjs-modernizr. 445s Preparing to unpack .../260-libjs-modernizr_2.6.2+ds1-5_all.deb ... 445s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 445s Selecting previously unselected package r-cran-later. 445s Preparing to unpack .../261-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 445s Unpacking r-cran-later (1.3.2+dfsg-1) ... 445s Selecting previously unselected package r-cran-promises. 445s Preparing to unpack .../262-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 445s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 445s Selecting previously unselected package r-cran-httpuv. 445s Preparing to unpack .../263-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 445s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 445s Selecting previously unselected package r-cran-sourcetools. 445s Preparing to unpack .../264-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 445s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 445s Selecting previously unselected package r-cran-commonmark. 445s Preparing to unpack .../265-r-cran-commonmark_1.9.1-1_amd64.deb ... 445s Unpacking r-cran-commonmark (1.9.1-1) ... 445s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 445s Preparing to unpack .../266-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 445s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 445s Selecting previously unselected package r-cran-shiny. 445s Preparing to unpack .../267-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 445s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 445s Selecting previously unselected package r-cran-rmarkdown. 445s Preparing to unpack .../268-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 445s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 445s Selecting previously unselected package r-cran-bookdown. 445s Preparing to unpack .../269-r-cran-bookdown_0.37+dfsg-1_all.deb ... 445s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 445s Selecting previously unselected package r-cran-biocmanager. 445s Preparing to unpack .../270-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 445s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 446s Selecting previously unselected package tex-common. 446s Preparing to unpack .../271-tex-common_6.18_all.deb ... 446s Unpacking tex-common (6.18) ... 446s Selecting previously unselected package t1utils. 446s Preparing to unpack .../272-t1utils_1.41-4build2_amd64.deb ... 446s Unpacking t1utils (1.41-4build2) ... 446s Selecting previously unselected package texlive-binaries. 446s Preparing to unpack .../273-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 446s Unpacking texlive-binaries (2023.20230311.66589-9) ... 446s Selecting previously unselected package texlive-base. 446s Preparing to unpack .../274-texlive-base_2023.20240207-1_all.deb ... 446s Unpacking texlive-base (2023.20240207-1) ... 447s Selecting previously unselected package texlive-latex-base. 447s Preparing to unpack .../275-texlive-latex-base_2023.20240207-1_all.deb ... 447s Unpacking texlive-latex-base (2023.20240207-1) ... 448s Selecting previously unselected package texlive-bibtex-extra. 448s Preparing to unpack .../276-texlive-bibtex-extra_2023.20240207-1_all.deb ... 448s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 451s Selecting previously unselected package r-bioc-biocstyle. 451s Preparing to unpack .../277-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 451s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 451s Selecting previously unselected package r-cran-hms. 451s Preparing to unpack .../278-r-cran-hms_1.1.3-1_all.deb ... 451s Unpacking r-cran-hms (1.1.3-1) ... 451s Selecting previously unselected package r-cran-prettyunits. 451s Preparing to unpack .../279-r-cran-prettyunits_1.2.0-1_all.deb ... 451s Unpacking r-cran-prettyunits (1.2.0-1) ... 451s Selecting previously unselected package r-cran-progress. 451s Preparing to unpack .../280-r-cran-progress_1.2.3-1_all.deb ... 451s Unpacking r-cran-progress (1.2.3-1) ... 451s Selecting previously unselected package r-cran-xml2. 451s Preparing to unpack .../281-r-cran-xml2_1.3.6-1_amd64.deb ... 451s Unpacking r-cran-xml2 (1.3.6-1) ... 451s Selecting previously unselected package r-bioc-biomart. 451s Preparing to unpack .../282-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 451s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 451s Selecting previously unselected package r-bioc-sparsematrixstats. 451s Preparing to unpack .../283-r-bioc-sparsematrixstats_1.14.0+dfsg-1_amd64.deb ... 451s Unpacking r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 451s Selecting previously unselected package r-bioc-delayedmatrixstats. 451s Preparing to unpack .../284-r-bioc-delayedmatrixstats_1.24.0+ds-1_all.deb ... 451s Unpacking r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 451s Selecting previously unselected package r-bioc-genomicranges. 451s Preparing to unpack .../285-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 451s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 451s Selecting previously unselected package r-bioc-summarizedexperiment. 451s Preparing to unpack .../286-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 451s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 451s Selecting previously unselected package r-cran-locfit. 451s Preparing to unpack .../287-r-cran-locfit_1.5-9.8-1_amd64.deb ... 451s Unpacking r-cran-locfit (1.5-9.8-1) ... 451s Selecting previously unselected package r-cran-gtable. 451s Preparing to unpack .../288-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 451s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 452s Selecting previously unselected package r-cran-isoband. 452s Preparing to unpack .../289-r-cran-isoband_0.2.7-1_amd64.deb ... 452s Unpacking r-cran-isoband (0.2.7-1) ... 452s Selecting previously unselected package r-cran-mass. 452s Preparing to unpack .../290-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 452s Unpacking r-cran-mass (7.3-60.0.1-1) ... 452s Selecting previously unselected package r-cran-nlme. 452s Preparing to unpack .../291-r-cran-nlme_3.1.164-1_amd64.deb ... 452s Unpacking r-cran-nlme (3.1.164-1) ... 452s Selecting previously unselected package r-cran-mgcv. 452s Preparing to unpack .../292-r-cran-mgcv_1.9-1-1_amd64.deb ... 452s Unpacking r-cran-mgcv (1.9-1-1) ... 452s Selecting previously unselected package r-cran-farver. 452s Preparing to unpack .../293-r-cran-farver_2.1.1-1_amd64.deb ... 452s Unpacking r-cran-farver (2.1.1-1) ... 452s Selecting previously unselected package r-cran-labeling. 452s Preparing to unpack .../294-r-cran-labeling_0.4.3-1_all.deb ... 452s Unpacking r-cran-labeling (0.4.3-1) ... 452s Selecting previously unselected package r-cran-colorspace. 452s Preparing to unpack .../295-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 452s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 452s Selecting previously unselected package r-cran-munsell. 452s Preparing to unpack .../296-r-cran-munsell_0.5.0-2build1_all.deb ... 452s Unpacking r-cran-munsell (0.5.0-2build1) ... 452s Selecting previously unselected package r-cran-rcolorbrewer. 452s Preparing to unpack .../297-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 452s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 452s Selecting previously unselected package r-cran-viridislite. 452s Preparing to unpack .../298-r-cran-viridislite_0.4.2-2_all.deb ... 452s Unpacking r-cran-viridislite (0.4.2-2) ... 452s Selecting previously unselected package r-cran-scales. 452s Preparing to unpack .../299-r-cran-scales_1.3.0-1_all.deb ... 452s Unpacking r-cran-scales (1.3.0-1) ... 452s Selecting previously unselected package r-cran-ggplot2. 452s Preparing to unpack .../300-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 452s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 452s Selecting previously unselected package r-cran-rcpparmadillo. 452s Preparing to unpack .../301-r-cran-rcpparmadillo_0.12.8.0.0-1_amd64.deb ... 452s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 452s Selecting previously unselected package r-bioc-deseq2. 452s Preparing to unpack .../302-r-bioc-deseq2_1.42.0+dfsg-1_amd64.deb ... 452s Unpacking r-bioc-deseq2 (1.42.0+dfsg-1) ... 452s Selecting previously unselected package r-cran-hwriter. 452s Preparing to unpack .../303-r-cran-hwriter_1.3.2.1-1_all.deb ... 452s Unpacking r-cran-hwriter (1.3.2.1-1) ... 452s Selecting previously unselected package r-bioc-rhtslib. 452s Preparing to unpack .../304-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 452s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 453s Selecting previously unselected package r-bioc-rsamtools. 453s Preparing to unpack .../305-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 453s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 453s Selecting previously unselected package r-cran-statmod. 453s Preparing to unpack .../306-r-cran-statmod_1.5.0-1_amd64.deb ... 453s Unpacking r-cran-statmod (1.5.0-1) ... 453s Selecting previously unselected package r-bioc-geneplotter. 453s Preparing to unpack .../307-r-bioc-geneplotter_1.80.0+dfsg-1_all.deb ... 453s Unpacking r-bioc-geneplotter (1.80.0+dfsg-1) ... 453s Selecting previously unselected package r-cran-survival. 453s Preparing to unpack .../308-r-cran-survival_3.5-8-1_amd64.deb ... 453s Unpacking r-cran-survival (3.5-8-1) ... 453s Selecting previously unselected package r-bioc-genefilter. 453s Preparing to unpack .../309-r-bioc-genefilter_1.84.0-1_amd64.deb ... 453s Unpacking r-bioc-genefilter (1.84.0-1) ... 453s Selecting previously unselected package r-bioc-dexseq. 453s Preparing to unpack .../310-r-bioc-dexseq_1.48.0+dfsg-1_all.deb ... 453s Unpacking r-bioc-dexseq (1.48.0+dfsg-1) ... 453s Selecting previously unselected package r-bioc-genomicalignments. 453s Preparing to unpack .../311-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 453s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 453s Selecting previously unselected package r-cran-rjson. 453s Preparing to unpack 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because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 460s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 460s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 460s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 460s Setting up r-cran-bitops (1.0-7-1) ... 460s Setting up r-cran-rprojroot (2.0.4-1) ... 460s Setting up r-cran-bit64 (4.0.5-1) ... 460s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 460s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 460s Setting up r-cran-askpass (1.2.0-1) ... 460s Setting up r-cran-fastmap (1.1.1-1) ... 460s Setting up r-cran-png (0.1-8-1) ... 460s Setting up r-bioc-biobase (2.62.0-1) ... 460s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 460s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 460s Setting up r-cran-utf8 (1.2.4-1) ... 460s Setting up 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r-cran-rcpparmadillo (0.12.8.0.0-1) ... 460s Setting up r-bioc-iranges (2.36.0-1) ... 460s Setting up r-cran-rjson (0.2.21-1) ... 460s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 460s Setting up r-cran-restfulr (0.0.15-1) ... 460s Setting up r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 460s Setting up r-cran-vctrs (0.6.5-1) ... 460s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 460s Setting up r-cran-ellipsis (0.3.2-2) ... 460s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 460s Setting up r-base-dev (4.3.2-1build1) ... 460s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 460s Setting up r-cran-stringr (1.5.1-1) ... 460s Setting up r-bioc-biocparallel (1.36.0-1) ... 460s Setting up r-cran-callr (3.7.3-2) ... 460s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 460s Setting up r-cran-desc (1.4.3-1) ... 460s Setting up r-cran-xml2 (1.3.6-1) ... 460s Setting up r-bioc-rhdf5 (2.46.1+dfsg-1) ... 460s Setting up r-cran-munsell (0.5.0-2build1) ... 460s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 460s Setting up r-cran-survival (3.5-8-1) ... 460s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 460s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 460s Setting up texlive-bibtex-extra (2023.20240207-1) ... 460s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 460s Setting up r-cran-httr (1.4.7+dfsg-1) ... 460s Setting up r-cran-hms (1.1.3-1) ... 460s Setting up r-cran-scales (1.3.0-1) ... 460s Setting up r-cran-memoise (2.0.1-1) ... 460s Setting up r-cran-promises (1.2.1+dfsg-1) ... 460s Setting up r-cran-purrr (1.0.2-1) ... 460s Setting up r-cran-blob (1.2.4-1) ... 460s Setting up r-cran-htmltools (0.5.7-1) ... 460s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 460s Setting up r-bioc-xvector (0.42.0-1) ... 460s Setting up r-cran-pkgbuild (1.4.3-1) ... 460s Setting up r-cran-sass (0.4.8+dfsg-1) ... 460s Setting up r-cran-dplyr (1.1.4-1) ... 460s Setting up r-cran-rsqlite (2.3.4-1) ... 460s Setting up r-cran-progress (1.2.3-1) ... 460s Setting up r-cran-pkgload (1.3.4-1) ... 460s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 460s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 460s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 460s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 460s Setting up r-cran-rematch2 (2.1.2-2build1) ... 460s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 460s Setting up r-cran-fontawesome (0.5.2-1) ... 460s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 460s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 460s Setting up r-cran-waldo (0.5.2-1build1) ... 460s Setting up r-cran-tidyr (1.3.1-1) ... 460s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 460s Setting up r-cran-roxygen2 (7.3.1-1) ... 460s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 460s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 460s Setting up r-bioc-hdf5array (1.30.1-1) ... 460s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 460s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 460s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 460s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ... 460s Setting up r-bioc-annotationdbi (1.64.1-1) ... 460s Setting up r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 460s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 460s Setting up r-cran-testthat (3.2.1-1) ... 460s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 460s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 460s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 460s Setting up r-bioc-beachmat (2.18.1+ds-1) ... 460s Setting up r-bioc-genefilter (1.84.0-1) ... 460s Setting up r-bioc-genomicalignments (1.38.2-1) ... 460s Setting up r-bioc-geneplotter (1.80.0+dfsg-1) ... 460s Setting up r-cran-bookdown (0.37+dfsg-1) ... 460s Setting up r-bioc-rtracklayer (1.62.0-1) ... 460s Setting up r-bioc-singlecellexperiment (1.24.0+ds-1) ... 460s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 460s Setting up r-bioc-glmgampoi (1.14.3+dfsg-1) ... 460s Setting up r-bioc-dexseq (1.48.0+dfsg-1) ... 460s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 460s Processing triggers for libc-bin (2.39-0ubuntu2) ... 460s Processing triggers for man-db (2.12.0-3) ... 461s Processing triggers for install-info (7.1-3) ... 461s Processing triggers for tex-common (6.18) ... 462s Running updmap-sys. This may take some time... done. 462s Running mktexlsr /var/lib/texmf ... done. 462s Building format(s) --all. 492s This may take some time... done. 499s Reading package lists... 499s Building dependency tree... 499s Reading state information... 500s Starting pkgProblemResolver with broken count: 0 500s Starting 2 pkgProblemResolver with broken count: 0 500s Done 500s The following NEW packages will be installed: 500s autopkgtest-satdep 500s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 500s Need to get 0 B/696 B of archives. 500s After this operation, 0 B of additional disk space will be used. 500s Get:1 /tmp/autopkgtest.fYJifr/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 501s Selecting previously unselected package autopkgtest-satdep. 501s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 126160 files and directories currently installed.) 501s Preparing to unpack .../2-autopkgtest-satdep.deb ... 501s Unpacking autopkgtest-satdep (0) ... 501s Setting up autopkgtest-satdep (0) ... 502s (Reading database ... 126160 files and directories currently installed.) 502s Removing autopkgtest-satdep (0) ... 503s autopkgtest [02:21:46]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 503s autopkgtest [02:21:46]: test pkg-r-autopkgtest: [----------------------- 503s Test: Try to load the R library DEXSeq 503s 503s R version 4.3.2 (2023-10-31) -- "Eye Holes" 503s Copyright (C) 2023 The R Foundation for Statistical Computing 503s Platform: x86_64-pc-linux-gnu (64-bit) 503s 503s R is free software and comes with ABSOLUTELY NO WARRANTY. 503s You are welcome to redistribute it under certain conditions. 503s Type 'license()' or 'licence()' for distribution details. 503s 503s R is a collaborative project with many contributors. 503s Type 'contributors()' for more information and 503s 'citation()' on how to cite R or R packages in publications. 503s 503s Type 'demo()' for some demos, 'help()' for on-line help, or 503s 'help.start()' for an HTML browser interface to help. 503s Type 'q()' to quit R. 503s 503s > library('DEXSeq') 503s Loading required package: BiocParallel 503s Loading required package: Biobase 503s Loading required package: BiocGenerics 503s 503s Attaching package: ‘BiocGenerics’ 503s 503s The following objects are masked from ‘package:stats’: 503s 503s IQR, mad, sd, var, xtabs 503s 503s The following objects are masked from ‘package:base’: 503s 503s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 503s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 503s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 503s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 503s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 503s table, tapply, union, unique, unsplit, which.max, which.min 503s 503s Welcome to Bioconductor 503s 503s Vignettes contain introductory material; view with 503s 'browseVignettes()'. To cite Bioconductor, see 503s 'citation("Biobase")', and for packages 'citation("pkgname")'. 503s 503s Loading required package: SummarizedExperiment 503s Loading required package: MatrixGenerics 503s Loading required package: matrixStats 503s 503s Attaching package: ‘matrixStats’ 503s 503s The following objects are masked from ‘package:Biobase’: 503s 503s anyMissing, rowMedians 503s 503s 503s Attaching package: ‘MatrixGenerics’ 503s 503s The following objects are masked from ‘package:matrixStats’: 503s 503s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 503s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 503s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 503s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 503s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 503s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 503s colWeightedMeans, colWeightedMedians, colWeightedSds, 503s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 503s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 503s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 503s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 503s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 503s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 503s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 503s rowWeightedSds, rowWeightedVars 503s 503s The following object is masked from ‘package:Biobase’: 503s 503s rowMedians 503s 503s Loading required package: GenomicRanges 503s Loading required package: stats4 503s Loading required package: S4Vectors 504s 504s Attaching package: ‘S4Vectors’ 504s 504s The following object is masked from ‘package:utils’: 504s 504s findMatches 504s 504s The following objects are masked from ‘package:base’: 504s 504s expand.grid, I, unname 504s 504s Loading required package: IRanges 505s Loading required package: GenomeInfoDb 508s Loading required package: DESeq2 509s Loading required package: AnnotationDbi 510s Loading required package: RColorBrewer 512s > 512s > 512s Other tests are currently unsupported! 512s They will be progressively added. 512s autopkgtest [02:21:55]: test pkg-r-autopkgtest: -----------------------] 514s pkg-r-autopkgtest PASS 514s autopkgtest [02:21:57]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 514s autopkgtest [02:21:57]: @@@@@@@@@@@@@@@@@@@@ summary 514s pkg-r-autopkgtest PASS 530s Creating nova instance adt-noble-i386-r-bioc-dexseq-20240322-021323-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...