0s autopkgtest [12:57:52]: starting date and time: 2024-03-21 12:57:52+0000 0s autopkgtest [12:57:52]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [12:57:52]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.enaz8h62/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-bioc-rsamtools --apt-upgrade r-bioc-dexseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-45.secgroup --name adt-noble-i386-r-bioc-dexseq-20240321-125752-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 272s autopkgtest [13:02:24]: testbed dpkg architecture: amd64 272s autopkgtest [13:02:24]: testbed apt version: 2.7.12 272s autopkgtest [13:02:24]: test architecture: i386 272s autopkgtest [13:02:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 273s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 273s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 273s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 273s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3774 kB] 273s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 273s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [460 kB] 273s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [696 kB] 273s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 273s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 273s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 273s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 273s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1273 kB] 273s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4238 kB] 273s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 273s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 273s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 273s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 276s Fetched 11.3 MB in 1s (8075 kB/s) 276s Reading package lists... 278s Reading package lists... 278s Building dependency tree... 278s Reading state information... 279s Calculating upgrade... 279s The following packages will be upgraded: 279s debianutils linux-firmware 279s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 279s Need to get 476 MB of archives. 279s After this operation, 5724 kB of additional disk space will be used. 279s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.17 [89.8 kB] 279s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-firmware amd64 20240318.git3b128b60-0ubuntu1 [475 MB] 283s Fetched 476 MB in 3s (140 MB/s) 283s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 283s Preparing to unpack .../debianutils_5.17_amd64.deb ... 283s Unpacking debianutils (5.17) over (5.16) ... 283s Setting up debianutils (5.17) ... 283s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 283s Preparing to unpack .../linux-firmware_20240318.git3b128b60-0ubuntu1_amd64.deb ... 283s Unpacking linux-firmware (20240318.git3b128b60-0ubuntu1) over (20240202.git36777504-0ubuntu1) ... 286s Setting up linux-firmware (20240318.git3b128b60-0ubuntu1) ... 286s Processing triggers for man-db (2.12.0-3) ... 287s Processing triggers for initramfs-tools (0.142ubuntu20) ... 287s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 287s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 294s Reading package lists... 295s Building dependency tree... 295s Reading state information... 295s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 295s sh: Attempting to set up Debian/Ubuntu apt sources automatically 295s sh: Distribution appears to be Ubuntu 296s Reading package lists... 297s Building dependency tree... 297s Reading state information... 297s eatmydata is already the newest version (131-1). 297s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 297s Reading package lists... 297s Building dependency tree... 297s Reading state information... 298s dbus is already the newest version (1.14.10-4ubuntu1). 298s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 298s Reading package lists... 298s Building dependency tree... 298s Reading state information... 298s rng-tools-debian is already the newest version (2.4). 298s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 298s Reading package lists... 298s Building dependency tree... 298s Reading state information... 299s The following packages will be REMOVED: 299s cloud-init* python3-configobj* python3-debconf* 299s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 299s After this operation, 3252 kB disk space will be freed. 299s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 299s Removing cloud-init (24.1.1-0ubuntu1) ... 299s Removing python3-configobj (5.0.8-3) ... 300s Removing python3-debconf (1.5.86) ... 300s Processing triggers for man-db (2.12.0-3) ... 300s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71476 files and directories currently installed.) 300s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 301s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 301s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 301s invoke-rc.d: policy-rc.d denied execution of try-restart. 301s Reading package lists... 301s Building dependency tree... 301s Reading state information... 301s linux-generic is already the newest version (6.8.0-11.11+1). 301s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 301s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 301s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 301s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 303s Reading package lists... 304s Reading package lists... 304s Building dependency tree... 304s Reading state information... 304s Calculating upgrade... 305s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 305s Reading package lists... 305s Building dependency tree... 305s Reading state information... 305s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 305s autopkgtest [13:02:57]: rebooting testbed after setup commands that affected boot 327s autopkgtest [13:03:19]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 328s autopkgtest [13:03:20]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-dexseq 329s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-dexseq 1.48.0+dfsg-1 (dsc) [2415 B] 329s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-dexseq 1.48.0+dfsg-1 (tar) [50.4 kB] 329s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-dexseq 1.48.0+dfsg-1 (diff) [2920 B] 329s gpgv: Signature made Fri Dec 1 06:39:45 2023 UTC 329s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 329s gpgv: issuer "tillea@rki.de" 329s gpgv: Can't check signature: No public key 329s dpkg-source: warning: cannot verify inline signature for ./r-bioc-dexseq_1.48.0+dfsg-1.dsc: no acceptable signature found 329s autopkgtest [13:03:21]: testing package r-bioc-dexseq version 1.48.0+dfsg-1 329s autopkgtest [13:03:21]: build not needed 335s autopkgtest [13:03:27]: test pkg-r-autopkgtest: preparing testbed 339s Note, using file '/tmp/autopkgtest.egzc9e/1-autopkgtest-satdep.dsc' to get the build dependencies 339s Reading package lists... 340s Building dependency tree... 340s Reading state information... 340s Starting pkgProblemResolver with broken count: 0 340s Starting 2 pkgProblemResolver with broken count: 0 340s Done 340s The following NEW packages will be installed: 340s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 340s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 340s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 340s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 340s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 340s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu hdf5-helpers 340s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 340s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 340s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 340s libcrypt-dev libcurl4-openssl-dev libdatrie1 libdeflate0 libfontconfig1 340s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 340s libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev 340s libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 340s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 340s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 340s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 340s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 340s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 340s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 340s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 340s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 340s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 340s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 340s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 340s libpotrace0 libptexenc1 libquadmath0 libreadline-dev libsharpyuv0 libsm6 340s libsnappy1v5 libssl-dev libstdc++-13-dev libsynctex2 libsz2 libtcl8.6 340s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 340s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 340s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 340s linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css 340s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 340s r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-beachmat 340s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 340s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings 340s r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-deseq2 r-bioc-dexseq 340s r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb 340s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 340s r-bioc-genomicranges r-bioc-glmgampoi r-bioc-hdf5array r-bioc-iranges 340s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters 340s r-bioc-rhdf5lib r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 340s r-bioc-s4arrays r-bioc-s4vectors r-bioc-singlecellexperiment 340s r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-summarizedexperiment 340s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 340s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 340s r-cran-blob r-cran-bookdown r-cran-brew r-cran-brio r-cran-bslib 340s r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools r-cran-colorspace 340s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 340s r-cran-dbplyr r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr 340s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap 340s r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 340s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 340s r-cran-glue r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools 340s r-cran-httpuv r-cran-httr r-cran-hwriter r-cran-isoband r-cran-jquerylib 340s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 340s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr 340s r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv 340s r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar 340s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 340s r-cran-plogr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx 340s r-cran-progress r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 340s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 340s r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rjson r-cran-rlang 340s r-cran-rmarkdown r-cran-roxygen2 r-cran-rprojroot r-cran-rsqlite r-cran-sass 340s r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod 340s r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-testthat 340s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 340s r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun 340s r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils 340s tex-common texlive-base texlive-bibtex-extra texlive-binaries 340s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 341s 0 upgraded, 337 newly installed, 0 to remove and 0 not upgraded. 341s Need to get 481 MB of archives. 341s After this operation, 1469 MB of additional disk space will be used. 341s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 341s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 341s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 341s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 341s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 341s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 341s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 341s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 341s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 341s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 341s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 341s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 341s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 341s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 341s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 341s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 341s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 341s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 341s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 341s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 341s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 341s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 341s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 341s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 341s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 341s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 341s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 341s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 341s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 341s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 341s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 341s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 341s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 341s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 341s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 341s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 341s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 341s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 341s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 341s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 341s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 341s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 341s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 341s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 341s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 341s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 341s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 341s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 341s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 341s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 341s Get:51 http://ftpmaster.internal/ubuntu noble/universe amd64 hdf5-helpers amd64 1.10.10+repack-3ubuntu1 [15.5 kB] 341s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 341s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 341s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 341s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 341s Get:56 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 341s Get:57 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 341s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 341s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 341s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libsnappy1v5 amd64 1.1.10-1 [28.4 kB] 341s Get:61 http://ftpmaster.internal/ubuntu noble/universe amd64 libblosc1 amd64 1.21.5+ds-1 [36.5 kB] 341s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 341s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 341s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 341s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 341s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 341s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 341s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 341s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 341s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libcurl4-openssl-dev amd64 8.5.0-2ubuntu2 [446 kB] 341s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 341s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 341s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 341s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 341s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 341s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 341s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-cpp-103-1 amd64 1.10.10+repack-3ubuntu1 [128 kB] 341s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-fortran-102 amd64 1.10.10+repack-3ubuntu1 [86.4 kB] 341s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB] 341s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-fortran-100 amd64 1.10.10+repack-3ubuntu1 [32.5 kB] 341s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-cpp-100 amd64 1.10.10+repack-3ubuntu1 [11.0 kB] 341s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 341s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 341s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 341s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 341s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 341s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 341s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec-dev amd64 1.1.2-1 [19.5 kB] 341s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libssl-dev amd64 3.0.10-1ubuntu4 [2400 kB] 341s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-dev amd64 1.10.10+repack-3ubuntu1 [2826 kB] 341s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 341s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 341s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 341s Get:94 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 341s Get:95 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 341s Get:96 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 341s Get:97 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 341s Get:98 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 341s Get:99 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 341s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 341s Get:101 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 341s Get:102 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 341s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 341s Get:104 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 341s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 341s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 341s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 341s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 341s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 341s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 342s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 342s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 342s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 342s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 342s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 342s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 342s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 342s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 342s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 342s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 342s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 342s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 342s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 342s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 342s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 342s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 342s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 342s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 342s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 342s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 342s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 342s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 342s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 342s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 342s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 342s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 342s Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 342s Get:138 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 342s Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 342s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 342s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 342s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 342s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 342s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 342s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 342s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 342s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 342s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 342s Get:149 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 342s Get:150 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 342s Get:151 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 342s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 342s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 342s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 342s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 342s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 342s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 342s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 342s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 342s Get:160 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 342s Get:161 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 342s Get:162 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 342s Get:163 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 342s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 342s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 342s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 342s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 342s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 342s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 342s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 342s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 342s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 342s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 342s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 342s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 342s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 342s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 342s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 342s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 342s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 342s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 342s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 342s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 342s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 342s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 342s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 342s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 342s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 342s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 342s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 342s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 343s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 343s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 343s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 343s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 343s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 343s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 343s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 343s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 343s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 343s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 343s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 343s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 343s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 343s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 343s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 343s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 343s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 343s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 343s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 343s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 343s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 343s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 343s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 343s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 343s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 343s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 343s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-beachmat amd64 2.18.1+ds-1 [1562 kB] 343s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 343s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 343s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 343s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 343s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 343s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 343s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 343s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 343s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 343s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 343s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 343s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 343s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 343s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 343s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 343s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 343s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 343s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 343s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 343s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 343s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 343s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 343s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 343s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 343s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 343s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 343s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 343s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 343s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 343s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 343s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 343s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 343s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 343s Get:252 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 343s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 343s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 343s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 343s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 343s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 343s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 344s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 344s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 344s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 344s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 344s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 344s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 344s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 344s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 344s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 344s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 344s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 344s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 344s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 344s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 344s Get:273 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 344s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 344s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 344s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 344s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 345s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 345s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 345s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 345s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 345s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 345s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 345s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsematrixstats amd64 1.14.0+dfsg-1 [829 kB] 345s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedmatrixstats all 1.24.0+ds-1 [483 kB] 345s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 345s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 345s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-locfit amd64 1.5-9.8-1 [513 kB] 345s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 345s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 345s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 345s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 345s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 345s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 345s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 345s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 345s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 345s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 345s Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 345s Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 345s Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 345s Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpparmadillo amd64 0.12.8.0.0-1 [862 kB] 345s Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-deseq2 amd64 1.42.0+dfsg-1 [1226 kB] 345s Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 345s Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 345s Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 345s Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 345s Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-geneplotter all 1.80.0+dfsg-1 [1416 kB] 345s Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 345s Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genefilter amd64 1.84.0-1 [1123 kB] 345s Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-dexseq all 1.48.0+dfsg-1 [464 kB] 345s Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 345s Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 345s Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 345s Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 345s Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 345s Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5lib amd64 1.24.2+dfsg-1 [96.2 kB] 345s Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5filters amd64 1.14.1+dfsg-3 [136 kB] 345s Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5 amd64 2.46.1+dfsg-1 [808 kB] 345s Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-hdf5array amd64 1.30.1-1 [8759 kB] 345s Get:321 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-singlecellexperiment all 1.24.0+ds-1 [828 kB] 345s Get:322 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-glmgampoi amd64 1.14.3+dfsg-1 [1205 kB] 345s Get:323 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brew all 1.0-10-1 [77.7 kB] 345s Get:324 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 345s Get:325 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 345s Get:326 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 345s Get:327 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 345s Get:328 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 345s Get:329 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 345s Get:330 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 345s Get:331 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 345s Get:332 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 345s Get:333 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 345s Get:334 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 345s Get:335 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-roxygen2 amd64 7.3.1-1 [712 kB] 345s Get:336 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 345s Get:337 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 346s Preconfiguring packages ... 346s Fetched 481 MB in 5s (96.6 MB/s) 346s Selecting previously unselected package libc-dev-bin. 346s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71421 files and directories currently installed.) 346s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 346s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 346s Selecting previously unselected package linux-libc-dev:amd64. 346s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 346s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 347s Selecting previously unselected package libcrypt-dev:amd64. 347s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 347s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 347s Selecting previously unselected package libtirpc-dev:amd64. 347s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 347s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 347s Selecting previously unselected package libnsl-dev:amd64. 347s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 347s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 347s Selecting previously unselected package rpcsvc-proto. 347s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 347s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 347s Selecting previously unselected package libc6-dev:amd64. 347s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 347s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 347s Selecting previously unselected package libisl23:amd64. 347s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 347s Unpacking libisl23:amd64 (0.26-3) ... 347s Selecting previously unselected package libmpc3:amd64. 347s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 347s Unpacking libmpc3:amd64 (1.3.1-1) ... 347s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 347s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 347s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 347s Selecting previously unselected package cpp-13. 347s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 347s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 347s Selecting previously unselected package cpp-x86-64-linux-gnu. 347s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 347s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 347s Selecting previously unselected package cpp. 347s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 347s Unpacking cpp (4:13.2.0-7ubuntu1) ... 347s Selecting previously unselected package libcc1-0:amd64. 347s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 347s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 347s Selecting previously unselected package libgomp1:amd64. 347s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 347s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 347s Selecting previously unselected package libitm1:amd64. 347s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 347s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 347s Selecting previously unselected package libatomic1:amd64. 347s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 347s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 347s Selecting previously unselected package libasan8:amd64. 347s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 347s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 347s Selecting previously unselected package liblsan0:amd64. 347s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 347s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 347s Selecting previously unselected package libtsan2:amd64. 347s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 347s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 348s Selecting previously unselected package libubsan1:amd64. 348s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 348s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 348s Selecting previously unselected package libhwasan0:amd64. 348s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 348s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 348s Selecting previously unselected package libquadmath0:amd64. 348s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 348s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 348s Selecting previously unselected package libgcc-13-dev:amd64. 348s 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libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 349s Selecting previously unselected package fontconfig. 349s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 349s Unpacking fontconfig (2.15.0-1ubuntu1) ... 349s Selecting previously unselected package fonts-font-awesome. 349s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 349s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 349s Selecting previously unselected package fonts-glyphicons-halflings. 349s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 349s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 349s Selecting previously unselected package fonts-lmodern. 349s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 349s Unpacking fonts-lmodern (2.005-1) ... 349s Selecting previously unselected package fonts-mathjax. 349s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 349s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 349s Selecting previously unselected package libgfortran5:amd64. 349s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 349s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 349s Selecting previously unselected package libgfortran-13-dev:amd64. 349s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 349s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 349s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 349s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 349s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 350s Selecting previously unselected package gfortran-13. 350s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 350s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 350s Selecting previously unselected package gfortran-x86-64-linux-gnu. 350s Preparing to unpack .../048-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 350s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 350s Selecting previously unselected package gfortran. 350s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 350s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 350s Selecting previously unselected package hdf5-helpers. 350s Preparing to unpack .../050-hdf5-helpers_1.10.10+repack-3ubuntu1_amd64.deb ... 350s Unpacking hdf5-helpers (1.10.10+repack-3ubuntu1) ... 350s Selecting previously unselected package icu-devtools. 350s Preparing to unpack .../051-icu-devtools_74.2-1ubuntu1_amd64.deb ... 350s Unpacking icu-devtools (74.2-1ubuntu1) ... 350s Selecting previously unselected package javascript-common. 350s Preparing to unpack .../052-javascript-common_11+nmu1_all.deb ... 350s Unpacking javascript-common (11+nmu1) ... 350s Selecting previously unselected package libaec0:amd64. 350s Preparing to unpack .../053-libaec0_1.1.2-1_amd64.deb ... 350s Unpacking libaec0:amd64 (1.1.2-1) ... 350s Selecting previously unselected package libio-string-perl. 350s Preparing to unpack .../054-libio-string-perl_1.08-4_all.deb ... 350s Unpacking libio-string-perl (1.08-4) ... 350s Selecting previously unselected package liblatex-tounicode-perl. 350s Preparing to unpack .../055-liblatex-tounicode-perl_0.54-2_all.deb ... 350s Unpacking liblatex-tounicode-perl (0.54-2) ... 350s Selecting previously unselected package libbibtex-parser-perl. 350s Preparing to unpack .../056-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 350s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 350s Selecting previously unselected package libblas3:amd64. 350s Preparing to unpack .../057-libblas3_3.12.0-3_amd64.deb ... 350s Unpacking libblas3:amd64 (3.12.0-3) ... 350s Selecting previously unselected package libblas-dev:amd64. 350s Preparing to unpack .../058-libblas-dev_3.12.0-3_amd64.deb ... 350s Unpacking libblas-dev:amd64 (3.12.0-3) ... 350s Selecting previously unselected package libsnappy1v5:amd64. 350s Preparing to unpack .../059-libsnappy1v5_1.1.10-1_amd64.deb ... 350s Unpacking libsnappy1v5:amd64 (1.1.10-1) ... 350s Selecting previously unselected package libblosc1:amd64. 350s Preparing to unpack .../060-libblosc1_1.21.5+ds-1_amd64.deb ... 350s Unpacking libblosc1:amd64 (1.21.5+ds-1) ... 350s Selecting previously unselected package libboost1.83-dev:amd64. 350s Preparing to unpack .../061-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 350s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 352s Selecting previously unselected package libboost-dev:amd64. 352s Preparing to unpack .../062-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 352s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ... 352s Selecting previously unselected package libbz2-dev:amd64. 352s Preparing to unpack .../063-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 352s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 353s Selecting previously unselected package libpixman-1-0:amd64. 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353s Unpacking libcurl4-openssl-dev:amd64 (8.5.0-2ubuntu2) ... 353s Selecting previously unselected package libdatrie1:amd64. 353s Preparing to unpack .../070-libdatrie1_0.2.13-3_amd64.deb ... 353s Unpacking libdatrie1:amd64 (0.2.13-3) ... 353s Selecting previously unselected package libdeflate0:amd64. 353s Preparing to unpack .../071-libdeflate0_1.19-1_amd64.deb ... 353s Unpacking libdeflate0:amd64 (1.19-1) ... 353s Selecting previously unselected package libgraphite2-3:amd64. 353s Preparing to unpack .../072-libgraphite2-3_1.3.14-2_amd64.deb ... 353s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 353s Selecting previously unselected package libharfbuzz0b:amd64. 353s Preparing to unpack .../073-libharfbuzz0b_8.3.0-2_amd64.deb ... 353s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 353s Selecting previously unselected package libsz2:amd64. 353s Preparing to unpack .../074-libsz2_1.1.2-1_amd64.deb ... 353s Unpacking libsz2:amd64 (1.1.2-1) ... 353s Selecting previously unselected package libhdf5-103-1:amd64. 353s Preparing to unpack .../075-libhdf5-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 353s Unpacking libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 353s Selecting previously unselected package libhdf5-cpp-103-1:amd64. 353s Preparing to unpack .../076-libhdf5-cpp-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 353s Unpacking libhdf5-cpp-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 353s Selecting previously unselected package libhdf5-fortran-102:amd64. 353s Preparing to unpack .../077-libhdf5-fortran-102_1.10.10+repack-3ubuntu1_amd64.deb ... 353s Unpacking libhdf5-fortran-102:amd64 (1.10.10+repack-3ubuntu1) ... 353s Selecting previously unselected package libhdf5-hl-100:amd64. 353s Preparing to unpack .../078-libhdf5-hl-100_1.10.10+repack-3ubuntu1_amd64.deb ... 353s Unpacking libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 353s Selecting previously unselected package libhdf5-hl-fortran-100:amd64. 353s Preparing to unpack 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Selecting previously unselected package libjpeg8:amd64. 353s Preparing to unpack .../084-libjpeg8_8c-2ubuntu11_amd64.deb ... 353s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 353s Selecting previously unselected package libjpeg8-dev:amd64. 353s Preparing to unpack .../085-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 353s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 353s Selecting previously unselected package libjpeg-dev:amd64. 353s Preparing to unpack .../086-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 353s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 353s Selecting previously unselected package libaec-dev:amd64. 353s Preparing to unpack .../087-libaec-dev_1.1.2-1_amd64.deb ... 353s Unpacking libaec-dev:amd64 (1.1.2-1) ... 353s Selecting previously unselected package libssl-dev:amd64. 353s Preparing to unpack .../088-libssl-dev_3.0.10-1ubuntu4_amd64.deb ... 353s Unpacking libssl-dev:amd64 (3.0.10-1ubuntu4) ... 353s Selecting previously unselected package libhdf5-dev. 353s Preparing to unpack .../089-libhdf5-dev_1.10.10+repack-3ubuntu1_amd64.deb ... 353s Unpacking libhdf5-dev (1.10.10+repack-3ubuntu1) ... 353s Selecting previously unselected package x11-common. 353s Preparing to unpack .../090-x11-common_1%3a7.7+23ubuntu2_all.deb ... 353s Unpacking x11-common (1:7.7+23ubuntu2) ... 353s Selecting previously unselected package libice6:amd64. 353s Preparing to unpack .../091-libice6_2%3a1.0.10-1build2_amd64.deb ... 353s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 353s Selecting previously unselected package libicu-dev:amd64. 353s Preparing to unpack .../092-libicu-dev_74.2-1ubuntu1_amd64.deb ... 353s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 354s Selecting previously unselected package libjs-bootstrap. 354s Preparing to unpack .../093-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 354s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 354s Selecting previously unselected package libjs-popper.js. 354s Preparing to unpack .../094-libjs-popper.js_1.16.1+ds-6_all.deb ... 354s 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package libjs-jquery-datatables. 354s Preparing to unpack .../100-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 354s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 354s Selecting previously unselected package libjs-sifter.js. 354s Preparing to unpack .../101-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 354s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 354s Selecting previously unselected package libjs-microplugin.js. 354s Preparing to unpack .../102-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 354s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 354s Selecting previously unselected package libjs-jquery-selectize.js. 354s Preparing to unpack .../103-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 354s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 354s Selecting previously unselected package libjs-jquery-ui. 354s Preparing to unpack .../104-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 354s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 354s Selecting previously unselected package libjs-json. 354s Preparing to unpack .../105-libjs-json_0~20221030+~1.0.8-1_all.deb ... 354s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 354s Selecting previously unselected package libjs-lunr. 354s Preparing to unpack .../106-libjs-lunr_2.3.9~dfsg-2_all.deb ... 354s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 354s Selecting previously unselected package libjs-prettify. 354s Preparing to unpack .../107-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 354s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 354s Selecting previously unselected package libkpathsea6:amd64. 354s Preparing to unpack .../108-libkpathsea6_2023.20230311.66589-9_amd64.deb ... 354s Unpacking libkpathsea6:amd64 (2023.20230311.66589-9) ... 354s Selecting previously unselected package liblapack3:amd64. 354s Preparing to unpack .../109-liblapack3_3.12.0-3_amd64.deb ... 354s Unpacking liblapack3:amd64 (3.12.0-3) ... 354s Selecting previously unselected package liblapack-dev:amd64. 354s Preparing to unpack .../110-liblapack-dev_3.12.0-3_amd64.deb ... 354s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 355s Selecting previously unselected package liblerc4:amd64. 355s Preparing to unpack .../111-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 355s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 355s Selecting previously unselected package liblua5.4-0:amd64. 355s Preparing to unpack .../112-liblua5.4-0_5.4.6-3_amd64.deb ... 355s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 355s Selecting previously unselected package libncurses-dev:amd64. 355s Preparing to unpack .../113-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 355s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 355s Selecting previously unselected package libthai-data. 355s Preparing to unpack .../114-libthai-data_0.1.29-2_all.deb ... 355s Unpacking libthai-data (0.1.29-2) ... 355s Selecting previously unselected package libthai0:amd64. 355s Preparing to unpack .../115-libthai0_0.1.29-2_amd64.deb ... 355s Unpacking libthai0:amd64 (0.1.29-2) ... 355s Selecting previously unselected package libpango-1.0-0:amd64. 355s Preparing to unpack .../116-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 355s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 355s Selecting previously unselected package libpangoft2-1.0-0:amd64. 355s Preparing to unpack .../117-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 355s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 355s Selecting previously unselected package libpangocairo-1.0-0:amd64. 355s Preparing to unpack .../118-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 355s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 355s Selecting previously unselected package libpaper1:amd64. 355s Preparing to unpack .../119-libpaper1_1.1.29_amd64.deb ... 355s Unpacking libpaper1:amd64 (1.1.29) ... 355s Selecting previously unselected package libpaper-utils. 355s Preparing to unpack .../120-libpaper-utils_1.1.29_amd64.deb ... 355s Unpacking libpaper-utils (1.1.29) ... 355s 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pkgconf-bin. 360s Preparing to unpack .../159-pkgconf-bin_1.8.1-2_amd64.deb ... 360s Unpacking pkgconf-bin (1.8.1-2) ... 360s Selecting previously unselected package pkgconf:amd64. 360s Preparing to unpack .../160-pkgconf_1.8.1-2_amd64.deb ... 360s Unpacking pkgconf:amd64 (1.8.1-2) ... 360s Selecting previously unselected package pkg-config:amd64. 360s Preparing to unpack .../161-pkg-config_1.8.1-2_amd64.deb ... 360s Unpacking pkg-config:amd64 (1.8.1-2) ... 360s Selecting previously unselected package liblzma-dev:amd64. 360s Preparing to unpack .../162-liblzma-dev_5.4.5-0.3_amd64.deb ... 360s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 360s Selecting previously unselected package r-base-dev. 360s Preparing to unpack .../163-r-base-dev_4.3.2-1build1_all.deb ... 360s Unpacking r-base-dev (4.3.2-1build1) ... 360s Selecting previously unselected package pkg-r-autopkgtest. 360s Preparing to unpack .../164-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 360s Unpacking pkg-r-autopkgtest 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360s Selecting previously unselected package r-cran-plogr. 360s Preparing to unpack .../182-r-cran-plogr_0.2.0-3build1_all.deb ... 360s Unpacking r-cran-plogr (0.2.0-3build1) ... 360s Selecting previously unselected package r-cran-cpp11. 360s Preparing to unpack .../183-r-cran-cpp11_0.4.7-1_all.deb ... 360s Unpacking r-cran-cpp11 (0.4.7-1) ... 360s Selecting previously unselected package r-cran-rsqlite. 360s Preparing to unpack .../184-r-cran-rsqlite_2.3.4-1_amd64.deb ... 360s Unpacking r-cran-rsqlite (2.3.4-1) ... 360s Selecting previously unselected package r-cran-curl. 360s Preparing to unpack .../185-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 360s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 360s Selecting previously unselected package r-cran-jsonlite. 360s Preparing to unpack .../186-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 360s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 360s Selecting previously unselected package r-cran-mime. 360s Preparing to unpack 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Preparing to unpack .../193-r-cran-png_0.1-8-1_amd64.deb ... 360s Unpacking r-cran-png (0.1-8-1) ... 360s Selecting previously unselected package r-bioc-zlibbioc. 360s Preparing to unpack .../194-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 360s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 360s Selecting previously unselected package r-bioc-xvector. 360s Preparing to unpack .../195-r-bioc-xvector_0.42.0-1_amd64.deb ... 360s Unpacking r-bioc-xvector (0.42.0-1) ... 360s Selecting previously unselected package r-cran-bitops. 360s Preparing to unpack .../196-r-cran-bitops_1.0-7-1_amd64.deb ... 360s Unpacking r-cran-bitops (1.0-7-1) ... 360s Selecting previously unselected package r-cran-rcurl. 360s Preparing to unpack .../197-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 360s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 360s Selecting previously unselected package r-bioc-genomeinfodbdata. 360s Preparing to unpack .../198-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 360s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 360s Selecting previously unselected package r-bioc-genomeinfodb. 360s Preparing to unpack .../199-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 360s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 360s Selecting previously unselected package r-cran-crayon. 360s Preparing to unpack .../200-r-cran-crayon_1.5.2-1_all.deb ... 360s Unpacking r-cran-crayon (1.5.2-1) ... 360s Selecting previously unselected package r-bioc-biostrings. 360s Preparing to unpack .../201-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 360s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 360s Selecting previously unselected package r-bioc-keggrest. 360s Preparing to unpack .../202-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 360s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 360s Selecting previously unselected package r-bioc-annotationdbi. 360s Preparing to unpack .../203-r-bioc-annotationdbi_1.64.1-1_all.deb ... 360s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 360s Selecting previously unselected package r-cran-xml. 360s Preparing to unpack .../204-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 360s Unpacking r-cran-xml (3.99-0.16.1-1) ... 360s Selecting previously unselected package r-cran-xtable. 360s Preparing to unpack .../205-r-cran-xtable_1%3a1.8-4-2_all.deb ... 360s Unpacking r-cran-xtable (1:1.8-4-2) ... 360s Selecting previously unselected package r-bioc-annotate. 360s Preparing to unpack .../206-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 360s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 360s Selecting previously unselected package r-cran-lattice. 360s Preparing to unpack .../207-r-cran-lattice_0.22-5-1_amd64.deb ... 360s Unpacking r-cran-lattice (0.22-5-1) ... 360s Selecting previously unselected package r-cran-matrix. 360s Preparing to unpack .../208-r-cran-matrix_1.6-5-1_amd64.deb ... 360s Unpacking r-cran-matrix (1.6-5-1) ... 360s Selecting previously unselected package r-cran-matrixstats. 360s Preparing to unpack .../209-r-cran-matrixstats_1.2.0-1_amd64.deb ... 360s Unpacking r-cran-matrixstats (1.2.0-1) ... 360s Selecting previously unselected package r-bioc-matrixgenerics. 360s Preparing to unpack .../210-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 360s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 360s Selecting previously unselected package r-cran-abind. 360s Preparing to unpack .../211-r-cran-abind_1.4-5-2_all.deb ... 360s Unpacking r-cran-abind (1.4-5-2) ... 360s Selecting previously unselected package r-bioc-s4arrays. 360s Preparing to unpack .../212-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 360s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 360s Selecting previously unselected package r-bioc-sparsearray. 360s Preparing to unpack .../213-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 360s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 360s Selecting previously unselected package r-bioc-delayedarray. 360s Preparing to unpack .../214-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 360s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 360s Selecting previously unselected package r-cran-pkgkitten. 360s Preparing to unpack .../215-r-cran-pkgkitten_0.2.3-1_all.deb ... 360s Unpacking r-cran-pkgkitten (0.2.3-1) ... 360s Selecting previously unselected package r-cran-rcpp. 360s Preparing to unpack .../216-r-cran-rcpp_1.0.12-1_amd64.deb ... 360s Unpacking r-cran-rcpp (1.0.12-1) ... 360s Selecting previously unselected package r-bioc-beachmat. 360s Preparing to unpack .../217-r-bioc-beachmat_2.18.1+ds-1_amd64.deb ... 360s Unpacking r-bioc-beachmat (2.18.1+ds-1) ... 360s Selecting previously unselected package r-cran-generics. 360s Preparing to unpack .../218-r-cran-generics_0.1.3-1_all.deb ... 360s Unpacking r-cran-generics (0.1.3-1) ... 360s Selecting previously unselected package r-cran-magrittr. 360s Preparing to unpack .../219-r-cran-magrittr_2.0.3-1_amd64.deb ... 360s Unpacking r-cran-magrittr (2.0.3-1) ... 360s Selecting previously unselected package r-cran-fansi. 361s Preparing to unpack .../220-r-cran-fansi_1.0.5-1_amd64.deb ... 361s Unpacking r-cran-fansi (1.0.5-1) ... 361s Selecting previously unselected package r-cran-utf8. 361s Preparing to unpack .../221-r-cran-utf8_1.2.4-1_amd64.deb ... 361s Unpacking r-cran-utf8 (1.2.4-1) ... 361s Selecting previously unselected package r-cran-pillar. 361s Preparing to unpack .../222-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 361s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 361s Selecting previously unselected package r-cran-tibble. 361s Preparing to unpack .../223-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 361s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 361s Selecting previously unselected package r-cran-withr. 361s Preparing to unpack .../224-r-cran-withr_2.5.0-1_all.deb ... 361s Unpacking r-cran-withr (2.5.0-1) ... 361s Selecting previously unselected package r-cran-tidyselect. 361s Preparing to unpack .../225-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 361s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 361s Selecting previously unselected package r-cran-dplyr. 361s Preparing to unpack .../226-r-cran-dplyr_1.1.4-1_amd64.deb ... 361s Unpacking r-cran-dplyr (1.1.4-1) ... 361s Selecting previously unselected package r-cran-purrr. 361s Preparing to unpack .../227-r-cran-purrr_1.0.2-1_amd64.deb ... 361s Unpacking r-cran-purrr (1.0.2-1) ... 361s Selecting previously unselected package r-cran-stringi. 361s Preparing to unpack .../228-r-cran-stringi_1.8.3-1_amd64.deb ... 361s Unpacking r-cran-stringi (1.8.3-1) ... 361s Selecting previously unselected package r-cran-stringr. 361s Preparing to unpack .../229-r-cran-stringr_1.5.1-1_all.deb ... 361s Unpacking r-cran-stringr (1.5.1-1) ... 361s Selecting previously unselected package r-cran-tidyr. 361s Preparing to unpack .../230-r-cran-tidyr_1.3.1-1_amd64.deb ... 361s Unpacking r-cran-tidyr (1.3.1-1) ... 361s Selecting previously unselected package r-cran-dbplyr. 361s Preparing to unpack .../231-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 361s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 361s Selecting previously unselected package r-cran-filelock. 361s Preparing to unpack .../232-r-cran-filelock_1.0.3-1_amd64.deb ... 361s Unpacking r-cran-filelock (1.0.3-1) ... 361s Selecting previously unselected package r-bioc-biocfilecache. 361s Preparing to unpack .../233-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 361s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 361s Selecting previously unselected package r-bioc-biocio. 361s Preparing to unpack .../234-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 361s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 361s Selecting previously unselected package r-cran-formatr. 361s Preparing to unpack .../235-r-cran-formatr_1.14-1_all.deb ... 361s Unpacking r-cran-formatr (1.14-1) ... 361s Selecting previously unselected package r-cran-lambda.r. 361s Preparing to unpack .../236-r-cran-lambda.r_1.2.4-2build1_all.deb ... 361s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 361s Selecting previously unselected package r-cran-futile.options. 361s Preparing to unpack .../237-r-cran-futile.options_1.0.1-3build1_all.deb ... 361s Unpacking r-cran-futile.options (1.0.1-3build1) ... 361s Selecting previously unselected package r-cran-futile.logger. 361s Preparing to unpack .../238-r-cran-futile.logger_1.4.3-4build1_all.deb ... 361s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 361s Selecting previously unselected package r-cran-snow. 361s Preparing to unpack .../239-r-cran-snow_1%3a0.4.4-2_all.deb ... 361s Unpacking r-cran-snow (1:0.4.4-2) ... 361s Selecting previously unselected package r-cran-codetools. 361s Preparing to unpack .../240-r-cran-codetools_0.2-19-1_all.deb ... 361s Unpacking r-cran-codetools (0.2-19-1) ... 361s Selecting previously unselected package r-cran-bh. 361s Preparing to unpack .../241-r-cran-bh_1.84.0-1_all.deb ... 361s Unpacking r-cran-bh (1.84.0-1) ... 361s Selecting previously unselected package r-bioc-biocparallel. 361s Preparing to unpack .../242-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 361s Unpacking r-bioc-biocparallel (1.36.0-1) ... 361s Selecting previously unselected package r-cran-base64enc. 361s Preparing to unpack .../243-r-cran-base64enc_0.1-3-3_amd64.deb ... 361s Unpacking r-cran-base64enc (0.1-3-3) ... 361s Selecting previously unselected package r-cran-digest. 361s Preparing to unpack .../244-r-cran-digest_0.6.34-1_amd64.deb ... 361s Unpacking r-cran-digest (0.6.34-1) ... 362s Selecting previously unselected package r-cran-ellipsis. 362s Preparing to unpack .../245-r-cran-ellipsis_0.3.2-2_amd64.deb ... 362s Unpacking r-cran-ellipsis (0.3.2-2) ... 362s Selecting previously unselected package r-cran-htmltools. 362s Preparing to unpack .../246-r-cran-htmltools_0.5.7-1_amd64.deb ... 362s Unpacking r-cran-htmltools (0.5.7-1) ... 362s Selecting previously unselected package r-cran-evaluate. 362s Preparing to unpack .../247-r-cran-evaluate_0.23-1_all.deb ... 362s Unpacking r-cran-evaluate (0.23-1) ... 362s Selecting previously unselected package r-cran-xfun. 362s Preparing to unpack .../248-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 362s Unpacking r-cran-xfun (0.41+dfsg-1) ... 362s Selecting previously unselected package r-cran-highr. 362s Preparing to unpack .../249-r-cran-highr_0.10+dfsg-1_all.deb ... 362s Unpacking r-cran-highr (0.10+dfsg-1) ... 362s Selecting previously unselected package r-cran-yaml. 362s Preparing to unpack .../250-r-cran-yaml_2.3.8-1_amd64.deb ... 362s Unpacking r-cran-yaml (2.3.8-1) ... 362s Selecting previously unselected package libjs-mathjax. 362s Preparing to unpack .../251-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 362s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 363s Selecting previously unselected package r-cran-knitr. 363s Preparing to unpack .../252-r-cran-knitr_1.45+dfsg-1_all.deb ... 363s Unpacking r-cran-knitr (1.45+dfsg-1) ... 363s Selecting previously unselected package r-cran-jquerylib. 363s Preparing to unpack .../253-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 363s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 363s Selecting previously unselected package r-cran-fs. 363s Preparing to unpack .../254-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 363s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 363s Selecting previously unselected package r-cran-rappdirs. 363s Preparing to unpack .../255-r-cran-rappdirs_0.3.3-1_amd64.deb ... 363s Unpacking r-cran-rappdirs (0.3.3-1) ... 363s Selecting previously unselected package r-cran-sass. 363s Preparing to unpack .../256-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 363s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 363s Selecting previously unselected package r-cran-bslib. 363s Preparing to unpack .../257-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 363s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 363s Selecting previously unselected package r-cran-fontawesome. 363s Preparing to unpack .../258-r-cran-fontawesome_0.5.2-1_all.deb ... 363s Unpacking r-cran-fontawesome (0.5.2-1) ... 363s Selecting previously unselected package r-cran-tinytex. 363s Preparing to unpack .../259-r-cran-tinytex_0.49-1_all.deb ... 363s Unpacking r-cran-tinytex (0.49-1) ... 363s Selecting previously unselected package libjs-modernizr. 363s Preparing to unpack .../260-libjs-modernizr_2.6.2+ds1-5_all.deb ... 363s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 363s Selecting previously unselected package r-cran-later. 363s Preparing to unpack .../261-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 363s Unpacking r-cran-later (1.3.2+dfsg-1) ... 363s Selecting previously unselected package r-cran-promises. 363s Preparing to unpack .../262-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 363s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 363s Selecting previously unselected package r-cran-httpuv. 363s Preparing to unpack .../263-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 363s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 363s Selecting previously unselected package r-cran-sourcetools. 363s Preparing to unpack .../264-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 363s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 363s Selecting previously unselected package r-cran-commonmark. 363s Preparing to unpack .../265-r-cran-commonmark_1.9.1-1_amd64.deb ... 363s Unpacking r-cran-commonmark (1.9.1-1) ... 363s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 363s Preparing to unpack .../266-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 363s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 363s Selecting previously unselected package r-cran-shiny. 363s Preparing to unpack .../267-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 363s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 363s Selecting previously unselected package r-cran-rmarkdown. 363s Preparing to unpack .../268-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 363s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 363s Selecting previously unselected package r-cran-bookdown. 363s Preparing to unpack .../269-r-cran-bookdown_0.37+dfsg-1_all.deb ... 363s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 364s Selecting previously unselected package r-cran-biocmanager. 364s Preparing to unpack .../270-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 364s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 364s Selecting previously unselected package tex-common. 364s Preparing to unpack .../271-tex-common_6.18_all.deb ... 364s Unpacking tex-common (6.18) ... 364s Selecting previously unselected package t1utils. 364s Preparing to unpack .../272-t1utils_1.41-4build2_amd64.deb ... 364s Unpacking t1utils (1.41-4build2) ... 364s Selecting previously unselected package texlive-binaries. 364s Preparing to unpack .../273-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 364s Unpacking texlive-binaries (2023.20230311.66589-9) ... 364s Selecting previously unselected package texlive-base. 364s Preparing to unpack .../274-texlive-base_2023.20240207-1_all.deb ... 364s Unpacking texlive-base (2023.20240207-1) ... 365s Selecting previously unselected package texlive-latex-base. 365s Preparing to unpack .../275-texlive-latex-base_2023.20240207-1_all.deb ... 365s Unpacking texlive-latex-base (2023.20240207-1) ... 366s Selecting previously unselected package texlive-bibtex-extra. 366s Preparing to unpack .../276-texlive-bibtex-extra_2023.20240207-1_all.deb ... 366s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 369s Selecting previously unselected package r-bioc-biocstyle. 369s Preparing to unpack .../277-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 369s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 369s Selecting previously unselected package r-cran-hms. 369s Preparing to unpack .../278-r-cran-hms_1.1.3-1_all.deb ... 369s Unpacking r-cran-hms (1.1.3-1) ... 369s Selecting previously unselected package r-cran-prettyunits. 369s Preparing to unpack .../279-r-cran-prettyunits_1.2.0-1_all.deb ... 369s Unpacking r-cran-prettyunits (1.2.0-1) ... 369s Selecting previously unselected package r-cran-progress. 369s Preparing to unpack .../280-r-cran-progress_1.2.3-1_all.deb ... 369s Unpacking r-cran-progress (1.2.3-1) ... 369s Selecting previously unselected package r-cran-xml2. 369s Preparing to unpack .../281-r-cran-xml2_1.3.6-1_amd64.deb ... 369s Unpacking r-cran-xml2 (1.3.6-1) ... 369s Selecting previously unselected package r-bioc-biomart. 369s Preparing to unpack .../282-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 369s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 369s Selecting previously unselected package r-bioc-sparsematrixstats. 369s Preparing to unpack .../283-r-bioc-sparsematrixstats_1.14.0+dfsg-1_amd64.deb ... 369s Unpacking r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 369s Selecting previously unselected package r-bioc-delayedmatrixstats. 369s Preparing to unpack .../284-r-bioc-delayedmatrixstats_1.24.0+ds-1_all.deb ... 369s Unpacking r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 369s Selecting previously unselected package r-bioc-genomicranges. 369s Preparing to unpack .../285-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 369s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 369s Selecting previously unselected package r-bioc-summarizedexperiment. 369s Preparing to unpack .../286-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 369s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 369s Selecting previously unselected package r-cran-locfit. 369s Preparing to unpack .../287-r-cran-locfit_1.5-9.8-1_amd64.deb ... 369s Unpacking r-cran-locfit (1.5-9.8-1) ... 369s Selecting previously unselected package r-cran-gtable. 369s Preparing to unpack .../288-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 369s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 369s Selecting previously unselected package r-cran-isoband. 369s Preparing to unpack .../289-r-cran-isoband_0.2.7-1_amd64.deb ... 369s Unpacking r-cran-isoband (0.2.7-1) ... 370s Selecting previously unselected package r-cran-mass. 370s Preparing to unpack .../290-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 370s Unpacking r-cran-mass (7.3-60.0.1-1) ... 370s Selecting previously unselected package r-cran-nlme. 370s Preparing to unpack .../291-r-cran-nlme_3.1.164-1_amd64.deb ... 370s Unpacking r-cran-nlme (3.1.164-1) ... 370s Selecting previously unselected package r-cran-mgcv. 370s Preparing to unpack .../292-r-cran-mgcv_1.9-1-1_amd64.deb ... 370s Unpacking r-cran-mgcv (1.9-1-1) ... 370s Selecting previously unselected package r-cran-farver. 370s Preparing to unpack .../293-r-cran-farver_2.1.1-1_amd64.deb ... 370s Unpacking r-cran-farver (2.1.1-1) ... 370s Selecting previously unselected package r-cran-labeling. 370s Preparing to unpack .../294-r-cran-labeling_0.4.3-1_all.deb ... 370s Unpacking r-cran-labeling (0.4.3-1) ... 370s Selecting previously unselected package r-cran-colorspace. 370s Preparing to unpack .../295-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 370s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 370s Selecting previously unselected package r-cran-munsell. 370s Preparing to unpack .../296-r-cran-munsell_0.5.0-2build1_all.deb ... 370s Unpacking r-cran-munsell (0.5.0-2build1) ... 370s Selecting previously unselected package r-cran-rcolorbrewer. 370s Preparing to unpack .../297-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 370s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 370s Selecting previously unselected package r-cran-viridislite. 370s Preparing to unpack .../298-r-cran-viridislite_0.4.2-2_all.deb ... 370s Unpacking r-cran-viridislite (0.4.2-2) ... 370s Selecting previously unselected package r-cran-scales. 370s Preparing to unpack .../299-r-cran-scales_1.3.0-1_all.deb ... 370s Unpacking r-cran-scales (1.3.0-1) ... 370s Selecting previously unselected package r-cran-ggplot2. 370s Preparing to unpack .../300-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 370s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 370s Selecting previously unselected package r-cran-rcpparmadillo. 370s Preparing to unpack .../301-r-cran-rcpparmadillo_0.12.8.0.0-1_amd64.deb ... 370s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 370s Selecting previously unselected package r-bioc-deseq2. 370s Preparing to unpack .../302-r-bioc-deseq2_1.42.0+dfsg-1_amd64.deb ... 370s Unpacking r-bioc-deseq2 (1.42.0+dfsg-1) ... 370s Selecting previously unselected package r-cran-hwriter. 370s Preparing to unpack .../303-r-cran-hwriter_1.3.2.1-1_all.deb ... 370s Unpacking r-cran-hwriter (1.3.2.1-1) ... 370s Selecting previously unselected package r-bioc-rhtslib. 370s Preparing to unpack .../304-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 370s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 370s Selecting previously unselected package r-bioc-rsamtools. 370s Preparing to unpack .../305-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 370s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 371s Selecting previously unselected package r-cran-statmod. 371s Preparing to unpack .../306-r-cran-statmod_1.5.0-1_amd64.deb ... 371s Unpacking r-cran-statmod (1.5.0-1) ... 371s Selecting previously unselected package r-bioc-geneplotter. 371s Preparing to unpack .../307-r-bioc-geneplotter_1.80.0+dfsg-1_all.deb ... 371s Unpacking r-bioc-geneplotter (1.80.0+dfsg-1) ... 371s Selecting previously unselected package r-cran-survival. 371s Preparing to unpack .../308-r-cran-survival_3.5-8-1_amd64.deb ... 371s Unpacking r-cran-survival (3.5-8-1) ... 371s Selecting previously unselected package r-bioc-genefilter. 371s Preparing to unpack .../309-r-bioc-genefilter_1.84.0-1_amd64.deb ... 371s Unpacking r-bioc-genefilter (1.84.0-1) ... 371s Selecting previously unselected package r-bioc-dexseq. 371s Preparing to unpack .../310-r-bioc-dexseq_1.48.0+dfsg-1_all.deb ... 371s Unpacking r-bioc-dexseq (1.48.0+dfsg-1) ... 371s Selecting previously unselected package r-bioc-genomicalignments. 371s Preparing to unpack .../311-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 371s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 371s Selecting previously unselected package r-cran-rjson. 371s Preparing to unpack .../312-r-cran-rjson_0.2.21-1_amd64.deb ... 371s Unpacking r-cran-rjson (0.2.21-1) ... 371s Selecting previously unselected package r-cran-restfulr. 371s Preparing to unpack .../313-r-cran-restfulr_0.0.15-1_amd64.deb ... 371s Unpacking r-cran-restfulr (0.0.15-1) ... 371s Selecting previously unselected package r-bioc-rtracklayer. 371s Preparing to unpack .../314-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 371s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 371s Selecting previously unselected package r-bioc-genomicfeatures. 371s Preparing to unpack .../315-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 371s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 371s Selecting previously unselected package r-bioc-rhdf5lib. 371s Preparing to unpack .../316-r-bioc-rhdf5lib_1.24.2+dfsg-1_amd64.deb ... 371s Unpacking r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 371s Selecting previously unselected package r-bioc-rhdf5filters. 371s Preparing to unpack .../317-r-bioc-rhdf5filters_1.14.1+dfsg-3_amd64.deb 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because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 378s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 378s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 378s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 378s Setting up r-cran-bitops (1.0-7-1) ... 378s Setting up r-cran-rprojroot (2.0.4-1) ... 378s Setting up r-cran-bit64 (4.0.5-1) ... 378s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 378s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 378s Setting up r-cran-askpass (1.2.0-1) ... 378s Setting up r-cran-fastmap (1.1.1-1) ... 378s Setting up r-cran-png (0.1-8-1) ... 378s Setting up r-bioc-biobase (2.62.0-1) ... 378s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 378s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 378s Setting up r-cran-utf8 (1.2.4-1) ... 378s Setting up r-cran-brew (1.0-10-1) ... 378s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 378s Setting up r-cran-stringi (1.8.3-1) ... 378s Setting up texlive-latex-base (2023.20240207-1) ... 378s Setting up r-cran-hwriter (1.3.2.1-1) ... 378s Setting up r-cran-cpp11 (0.4.7-1) ... 378s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 378s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 378s Setting up r-cran-isoband (0.2.7-1) ... 378s Setting up r-cran-futile.logger (1.4.3-4build1) ... 378s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 378s Setting up r-cran-later (1.3.2+dfsg-1) ... 378s Setting up r-cran-matrix (1.6-5-1) ... 378s Setting up r-cran-tinytex (0.49-1) ... 378s Setting up r-cran-knitr (1.45+dfsg-1) ... 378s Setting up r-cran-mgcv (1.9-1-1) ... 378s Setting up g++ (4:13.2.0-7ubuntu1) ... 378s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 378s Setting up r-cran-cachem (1.0.8-1) ... 378s Setting up build-essential (12.10ubuntu1) ... 378s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ... 378s Setting up r-bioc-iranges (2.36.0-1) ... 378s Setting up r-cran-rjson (0.2.21-1) ... 378s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 378s Setting up r-cran-restfulr (0.0.15-1) ... 378s Setting up r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 378s Setting up r-cran-vctrs (0.6.5-1) ... 378s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 378s Setting up r-cran-ellipsis (0.3.2-2) ... 378s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 378s Setting up r-base-dev (4.3.2-1build1) ... 378s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 378s Setting up r-cran-stringr (1.5.1-1) ... 378s Setting up r-bioc-biocparallel (1.36.0-1) ... 378s Setting up r-cran-callr (3.7.3-2) ... 378s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 378s Setting up r-cran-desc (1.4.3-1) ... 378s Setting up r-cran-xml2 (1.3.6-1) ... 378s Setting up r-bioc-rhdf5 (2.46.1+dfsg-1) ... 378s Setting up r-cran-munsell (0.5.0-2build1) ... 378s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 378s Setting up r-cran-survival (3.5-8-1) ... 378s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 378s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 378s Setting up texlive-bibtex-extra (2023.20240207-1) ... 378s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 378s Setting up r-cran-httr (1.4.7+dfsg-1) ... 378s Setting up r-cran-hms (1.1.3-1) ... 378s Setting up r-cran-scales (1.3.0-1) ... 378s Setting up r-cran-memoise (2.0.1-1) ... 378s Setting up r-cran-promises (1.2.1+dfsg-1) ... 378s Setting up r-cran-purrr (1.0.2-1) ... 378s Setting up r-cran-blob (1.2.4-1) ... 378s Setting up r-cran-htmltools (0.5.7-1) ... 378s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 378s Setting up r-bioc-xvector (0.42.0-1) ... 378s Setting up r-cran-pkgbuild (1.4.3-1) ... 378s Setting up r-cran-sass (0.4.8+dfsg-1) ... 378s Setting up r-cran-dplyr (1.1.4-1) ... 378s Setting up r-cran-rsqlite (2.3.4-1) ... 378s Setting up r-cran-progress (1.2.3-1) ... 378s Setting up r-cran-pkgload (1.3.4-1) ... 378s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 378s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 378s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 378s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 378s Setting up r-cran-rematch2 (2.1.2-2build1) ... 378s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 378s Setting up r-cran-fontawesome (0.5.2-1) ... 378s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 378s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 378s Setting up r-cran-waldo (0.5.2-1build1) ... 378s Setting up r-cran-tidyr (1.3.1-1) ... 378s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 378s Setting up r-cran-roxygen2 (7.3.1-1) ... 378s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 378s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 378s Setting up r-bioc-hdf5array (1.30.1-1) ... 378s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 378s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 378s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 378s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ... 378s Setting up r-bioc-annotationdbi (1.64.1-1) ... 378s Setting up r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 378s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 378s Setting up r-cran-testthat (3.2.1-1) ... 378s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 378s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 378s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 378s Setting up r-bioc-beachmat (2.18.1+ds-1) ... 378s Setting up r-bioc-genefilter (1.84.0-1) ... 378s Setting up r-bioc-genomicalignments (1.38.2-1) ... 378s Setting up r-bioc-geneplotter (1.80.0+dfsg-1) ... 378s Setting up r-cran-bookdown (0.37+dfsg-1) ... 378s Setting up r-bioc-rtracklayer (1.62.0-1) ... 378s Setting up r-bioc-singlecellexperiment (1.24.0+ds-1) ... 378s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 378s Setting up r-bioc-glmgampoi (1.14.3+dfsg-1) ... 378s Setting up r-bioc-dexseq (1.48.0+dfsg-1) ... 378s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 378s Processing triggers for libc-bin (2.39-0ubuntu2) ... 378s Processing triggers for man-db (2.12.0-3) ... 379s Processing triggers for install-info (7.1-3) ... 379s Processing triggers for tex-common (6.18) ... 380s Running updmap-sys. This may take some time... done. 380s Running mktexlsr /var/lib/texmf ... done. 380s Building format(s) --all. 410s This may take some time... done. 419s Reading package lists... 420s Building dependency tree... 420s Reading state information... 420s Starting pkgProblemResolver with broken count: 0 420s Starting 2 pkgProblemResolver with broken count: 0 420s Done 420s The following NEW packages will be installed: 420s autopkgtest-satdep 420s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 420s Need to get 0 B/700 B of archives. 420s After this operation, 0 B of additional disk space will be used. 420s Get:1 /tmp/autopkgtest.egzc9e/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 421s Selecting previously unselected package autopkgtest-satdep. 421s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 126161 files and directories currently installed.) 421s Preparing to unpack .../2-autopkgtest-satdep.deb ... 421s Unpacking autopkgtest-satdep (0) ... 421s Setting up autopkgtest-satdep (0) ... 422s (Reading database ... 126161 files and directories currently installed.) 422s Removing autopkgtest-satdep (0) ... 423s autopkgtest [13:04:55]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 423s autopkgtest [13:04:55]: test pkg-r-autopkgtest: [----------------------- 423s Test: Try to load the R library DEXSeq 423s 423s R version 4.3.2 (2023-10-31) -- "Eye Holes" 423s Copyright (C) 2023 The R Foundation for Statistical Computing 423s Platform: x86_64-pc-linux-gnu (64-bit) 423s 423s R is free software and comes with ABSOLUTELY NO WARRANTY. 423s You are welcome to redistribute it under certain conditions. 423s Type 'license()' or 'licence()' for distribution details. 423s 423s R is a collaborative project with many contributors. 423s Type 'contributors()' for more information and 423s 'citation()' on how to cite R or R packages in publications. 423s 423s Type 'demo()' for some demos, 'help()' for on-line help, or 423s 'help.start()' for an HTML browser interface to help. 423s Type 'q()' to quit R. 423s 423s > library('DEXSeq') 423s Loading required package: BiocParallel 423s Loading required package: Biobase 423s Loading required package: BiocGenerics 423s 423s Attaching package: ‘BiocGenerics’ 423s 423s The following objects are masked from ‘package:stats’: 423s 423s IQR, mad, sd, var, xtabs 423s 423s The following objects are masked from ‘package:base’: 423s 423s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 423s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 423s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 423s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 423s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 423s table, tapply, union, unique, unsplit, which.max, which.min 423s 423s Welcome to Bioconductor 423s 423s Vignettes contain introductory material; view with 423s 'browseVignettes()'. To cite Bioconductor, see 423s 'citation("Biobase")', and for packages 'citation("pkgname")'. 423s 423s Loading required package: SummarizedExperiment 423s Loading required package: MatrixGenerics 423s Loading required package: matrixStats 423s 423s Attaching package: ‘matrixStats’ 423s 423s The following objects are masked from ‘package:Biobase’: 423s 423s anyMissing, rowMedians 423s 423s 423s Attaching package: ‘MatrixGenerics’ 423s 423s The following objects are masked from ‘package:matrixStats’: 423s 423s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 423s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 423s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 423s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 423s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 423s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 423s colWeightedMeans, colWeightedMedians, colWeightedSds, 423s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 423s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 423s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 423s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 423s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 423s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 423s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 423s rowWeightedSds, rowWeightedVars 423s 423s The following object is masked from ‘package:Biobase’: 423s 423s rowMedians 423s 423s Loading required package: GenomicRanges 423s Loading required package: stats4 423s Loading required package: S4Vectors 424s 424s Attaching package: ‘S4Vectors’ 424s 424s The following object is masked from ‘package:utils’: 424s 424s findMatches 424s 424s The following objects are masked from ‘package:base’: 424s 424s expand.grid, I, unname 424s 424s Loading required package: IRanges 425s Loading required package: GenomeInfoDb 428s Loading required package: DESeq2 429s Loading required package: AnnotationDbi 430s Loading required package: RColorBrewer 432s > 432s > 432s Other tests are currently unsupported! 432s They will be progressively added. 432s autopkgtest [13:05:04]: test pkg-r-autopkgtest: -----------------------] 433s autopkgtest [13:05:05]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 433s pkg-r-autopkgtest PASS 433s autopkgtest [13:05:05]: @@@@@@@@@@@@@@@@@@@@ summary 433s pkg-r-autopkgtest PASS 464s Creating nova instance adt-noble-i386-r-bioc-dexseq-20240321-125752-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240320.img (UUID 3219a3f4-90ea-47d9-8dfb-3912f2ae9f95)...