0s autopkgtest [02:12:44]: starting date and time: 2024-03-22 02:12:44+0000 0s autopkgtest [02:12:44]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [02:12:44]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5lgon619/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-delayedmatrixstats --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-29.secgroup --name adt-noble-i386-r-bioc-delayedmatrixstats-20240322-021244-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 494s autopkgtest [02:20:58]: testbed dpkg architecture: amd64 494s autopkgtest [02:20:58]: testbed apt version: 2.7.12 494s autopkgtest [02:20:58]: test architecture: i386 494s autopkgtest [02:20:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup 494s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 494s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 494s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 494s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3762 kB] 494s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 494s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB] 494s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB] 494s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 494s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 494s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 494s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 494s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1269 kB] 494s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4236 kB] 494s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 494s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 494s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 494s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 497s Fetched 11.3 MB in 1s (7914 kB/s) 498s Reading package lists... 499s Reading package lists... 500s Building dependency tree... 500s Reading state information... 500s Calculating upgrade... 500s The following packages will be upgraded: 500s cloud-init fonts-ubuntu-console python3-markupsafe 500s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 500s Need to get 629 kB of archives. 500s After this operation, 11.3 kB disk space will be freed. 500s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 500s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 500s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 500s Preconfiguring packages ... 500s Fetched 629 kB in 0s (25.8 MB/s) 501s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 501s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 501s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 501s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 501s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 501s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 503s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 503s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 503s Setting up cloud-init (24.1.2-0ubuntu1) ... 503s Setting up python3-markupsafe (2.1.5-1build1) ... 503s Processing triggers for man-db (2.12.0-3) ... 503s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 504s Reading package lists... 504s Building dependency tree... 504s Reading state information... 504s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 505s sh: Attempting to set up Debian/Ubuntu apt sources automatically 505s sh: Distribution appears to be Ubuntu 506s Reading package lists... 506s Building dependency tree... 506s Reading state information... 506s eatmydata is already the newest version (131-1). 506s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 506s Reading package lists... 506s Building dependency tree... 506s Reading state information... 507s dbus is already the newest version (1.14.10-4ubuntu1). 507s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 507s Reading package lists... 507s Building dependency tree... 507s Reading state information... 507s rng-tools-debian is already the newest version (2.4). 507s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 508s Reading package lists... 508s Building dependency tree... 508s Reading state information... 508s The following packages will be REMOVED: 508s cloud-init* python3-configobj* python3-debconf* 508s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 508s After this operation, 3256 kB disk space will be freed. 508s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 508s Removing cloud-init (24.1.2-0ubuntu1) ... 509s Removing python3-configobj (5.0.8-3) ... 509s Removing python3-debconf (1.5.86) ... 509s Processing triggers for man-db (2.12.0-3) ... 509s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 509s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 510s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 510s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 510s invoke-rc.d: policy-rc.d denied execution of try-restart. 510s Reading package lists... 510s Building dependency tree... 510s Reading state information... 511s linux-generic is already the newest version (6.8.0-11.11+1). 511s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 511s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 511s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 511s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 513s Reading package lists... 513s Reading package lists... 513s Building dependency tree... 513s Reading state information... 514s Calculating upgrade... 514s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 514s Reading package lists... 514s Building dependency tree... 514s Reading state information... 515s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 515s autopkgtest [02:21:19]: rebooting testbed after setup commands that affected boot 680s autopkgtest [02:24:04]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 681s autopkgtest [02:24:05]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-delayedmatrixstats 682s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-delayedmatrixstats 1.24.0+ds-1 (dsc) [2394 B] 682s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-delayedmatrixstats 1.24.0+ds-1 (tar) [32.4 kB] 682s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-delayedmatrixstats 1.24.0+ds-1 (diff) [3208 B] 682s gpgv: Signature made Thu Nov 30 02:02:45 2023 UTC 682s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 682s gpgv: issuer "plessy@debian.org" 682s gpgv: Can't check signature: No public key 682s dpkg-source: warning: cannot verify inline signature for ./r-bioc-delayedmatrixstats_1.24.0+ds-1.dsc: no acceptable signature found 682s autopkgtest [02:24:06]: testing package r-bioc-delayedmatrixstats version 1.24.0+ds-1 683s autopkgtest [02:24:07]: build not needed 684s autopkgtest [02:24:08]: test pkg-r-autopkgtest: preparing testbed 690s Note, using file '/tmp/autopkgtest.gRTTF9/1-autopkgtest-satdep.dsc' to get the build dependencies 690s Reading package lists... 690s Building dependency tree... 690s Reading state information... 691s Starting pkgProblemResolver with broken count: 0 691s Starting 2 pkgProblemResolver with broken count: 0 691s Done 691s The following NEW packages will be installed: 691s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 691s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 691s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 691s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 691s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 691s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu hdf5-helpers 691s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 691s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libbz2-dev libc-dev-bin 691s libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4-openssl-dev libdatrie1 691s libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 691s libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 691s libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 691s libhdf5-hl-fortran-100 libhwasan0 libice6 libicu-dev libio-string-perl 691s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 691s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 691s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 691s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 691s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 691s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 691s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 691s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 691s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 691s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 691s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 691s libreadline-dev libsharpyuv0 libsm6 libsnappy1v5 libssl-dev libstdc++-13-dev 691s libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 691s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 691s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 691s libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass 691s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 691s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 691s r-bioc-biocgenerics r-bioc-biocstyle r-bioc-delayedarray 691s r-bioc-delayedmatrixstats r-bioc-hdf5array r-bioc-iranges 691s r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib 691s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray r-bioc-sparsematrixstats 691s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-base64enc 691s r-cran-biocmanager r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem 691s r-cran-callr r-cran-cli r-cran-commonmark r-cran-crayon r-cran-desc 691s r-cran-diffobj r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi 691s r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr 691s r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr 691s r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr 691s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-pillar 691s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 691s r-cran-praise r-cran-processx r-cran-profmem r-cran-promises r-cran-ps 691s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rematch2 r-cran-rlang 691s r-cran-rmarkdown r-cran-rprojroot r-cran-sass r-cran-shiny 691s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-testthat 691s r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-waldo 691s r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml rpcsvc-proto t1utils 691s tex-common texlive-base texlive-bibtex-extra texlive-binaries 691s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 691s 0 upgraded, 255 newly installed, 0 to remove and 0 not upgraded. 691s Need to get 360 MB of archives. 691s After this operation, 1127 MB of additional disk space will be used. 691s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 691s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 691s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 691s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 691s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 691s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 691s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 691s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 691s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 691s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 691s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 691s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 691s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 691s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 691s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 691s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 691s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 691s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 691s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 691s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 691s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 691s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 691s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 691s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 691s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 692s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 692s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 692s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 692s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 692s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 692s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 692s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 692s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 692s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 692s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 692s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 692s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 692s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 692s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 692s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 692s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 692s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 692s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 692s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 692s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 692s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 692s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 692s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 692s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 692s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 692s Get:51 http://ftpmaster.internal/ubuntu noble/universe amd64 hdf5-helpers amd64 1.10.10+repack-3ubuntu1 [15.5 kB] 692s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 692s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 692s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 692s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 692s Get:56 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 692s Get:57 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 692s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 692s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 692s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libsnappy1v5 amd64 1.1.10-1 [28.4 kB] 692s Get:61 http://ftpmaster.internal/ubuntu noble/universe amd64 libblosc1 amd64 1.21.5+ds-1 [36.5 kB] 692s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 692s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 692s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 692s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 692s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 692s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 692s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libcurl4-openssl-dev amd64 8.5.0-2ubuntu2 [446 kB] 692s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 692s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 692s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 692s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 692s Get:73 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 692s Get:74 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 692s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-cpp-103-1 amd64 1.10.10+repack-3ubuntu1 [128 kB] 692s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-fortran-102 amd64 1.10.10+repack-3ubuntu1 [86.4 kB] 692s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB] 692s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-fortran-100 amd64 1.10.10+repack-3ubuntu1 [32.5 kB] 692s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-cpp-100 amd64 1.10.10+repack-3ubuntu1 [11.0 kB] 692s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 692s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 692s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 692s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 692s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 692s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 692s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec-dev amd64 1.1.2-1 [19.5 kB] 692s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libssl-dev amd64 3.0.10-1ubuntu4 [2400 kB] 692s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-dev amd64 1.10.10+repack-3ubuntu1 [2826 kB] 692s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 692s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 692s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 692s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 692s Get:93 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 692s Get:94 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 692s Get:95 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 692s Get:96 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 692s Get:97 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 692s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 692s Get:99 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 692s Get:100 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 692s Get:101 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 692s Get:102 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 692s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 692s Get:104 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 692s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 692s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 692s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 692s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 693s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 693s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 693s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 693s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 693s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 693s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 693s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 693s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 693s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 693s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 693s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 693s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 693s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 693s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 693s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 693s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 693s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 693s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 693s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 693s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 693s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 693s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 693s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 693s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 693s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 693s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 693s Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 693s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 693s Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 693s Get:138 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 693s Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 693s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 693s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 693s Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 693s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 693s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 693s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 693s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 693s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 693s Get:148 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 693s Get:149 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 693s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 693s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 693s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 693s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 693s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 693s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 693s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 693s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 693s Get:158 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 693s Get:159 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 693s Get:160 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 693s Get:161 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 693s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 693s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 693s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 693s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 693s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 693s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 693s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 693s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 693s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 693s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 693s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 693s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 693s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 693s Get:175 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 693s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 693s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 693s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 693s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 693s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 693s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 693s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 693s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 693s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 693s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 693s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 693s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 693s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 693s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 693s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 693s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 693s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 693s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 693s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 693s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 693s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 693s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 693s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 693s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 693s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 693s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 693s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 693s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 693s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 693s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 693s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 693s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 693s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 693s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 693s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 693s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 693s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 693s Get:213 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 693s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 694s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 694s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 694s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 694s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 694s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 694s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 694s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 694s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 694s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 694s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 694s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 694s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 694s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 694s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 694s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 694s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 694s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsematrixstats amd64 1.14.0+dfsg-1 [829 kB] 694s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedmatrixstats all 1.24.0+ds-1 [483 kB] 694s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5lib amd64 1.24.2+dfsg-1 [96.2 kB] 694s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5filters amd64 1.14.1+dfsg-3 [136 kB] 694s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5 amd64 2.46.1+dfsg-1 [808 kB] 694s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-hdf5array amd64 1.30.1-1 [8759 kB] 694s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 694s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 694s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 694s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 694s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 694s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 694s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 694s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 694s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 694s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 694s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 694s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 694s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 694s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 694s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-profmem all 0.6.0+dfsg-1 [46.5 kB] 695s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 695s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 695s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 695s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 695s Preconfiguring packages ... 695s Fetched 360 MB in 3s (110 MB/s) 695s Selecting previously unselected package libc-dev-bin. 696s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 696s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 696s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 696s Selecting previously unselected package linux-libc-dev:amd64. 696s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 696s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 696s Selecting previously unselected package libcrypt-dev:amd64. 696s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 696s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 696s Selecting previously unselected package libtirpc-dev:amd64. 696s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 696s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 696s Selecting previously unselected package libnsl-dev:amd64. 696s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 696s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 696s Selecting previously unselected package rpcsvc-proto. 696s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 696s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 696s Selecting previously unselected package libc6-dev:amd64. 696s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 696s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 696s Selecting previously unselected package libisl23:amd64. 696s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 696s Unpacking libisl23:amd64 (0.26-3) ... 696s Selecting previously unselected package libmpc3:amd64. 696s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 696s Unpacking libmpc3:amd64 (1.3.1-1) ... 696s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 696s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 696s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 696s Selecting previously unselected package cpp-13. 696s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 696s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 696s Selecting previously unselected package cpp-x86-64-linux-gnu. 697s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 697s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 697s Selecting previously unselected package cpp. 697s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 697s Unpacking cpp (4:13.2.0-7ubuntu1) ... 697s Selecting previously unselected package libcc1-0:amd64. 697s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 697s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 697s Selecting previously unselected package libgomp1:amd64. 697s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 697s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 697s Selecting previously unselected package libitm1:amd64. 697s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 697s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 697s Selecting previously unselected package libatomic1:amd64. 697s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 697s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 697s Selecting previously unselected package libasan8:amd64. 697s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 697s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 697s Selecting previously unselected package liblsan0:amd64. 697s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 697s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 697s Selecting previously unselected package libtsan2:amd64. 697s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 697s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 697s Selecting previously unselected package libubsan1:amd64. 697s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 697s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 697s Selecting previously unselected package libhwasan0:amd64. 697s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 697s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 697s Selecting previously unselected package libquadmath0:amd64. 697s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 697s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 697s Selecting previously unselected package libgcc-13-dev:amd64. 697s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 697s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 697s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 697s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 697s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 698s Selecting previously unselected package gcc-13. 698s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 698s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 698s Selecting previously unselected package gcc-x86-64-linux-gnu. 698s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 698s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 698s Selecting previously unselected package gcc. 698s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 698s Unpacking gcc (4:13.2.0-7ubuntu1) ... 698s Selecting previously unselected package libstdc++-13-dev:amd64. 698s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 698s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 698s Selecting previously unselected package g++-13-x86-64-linux-gnu. 698s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 698s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 698s Selecting previously unselected package g++-13. 698s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 698s Unpacking g++-13 (13.2.0-17ubuntu2) ... 698s Selecting previously unselected package g++-x86-64-linux-gnu. 698s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 698s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 698s Selecting previously unselected package g++. 698s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 698s Unpacking g++ (4:13.2.0-7ubuntu1) ... 698s Selecting previously unselected package build-essential. 698s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 698s Unpacking build-essential (12.10ubuntu1) ... 698s Selecting previously unselected package dctrl-tools. 698s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 698s Unpacking dctrl-tools (2.24-3build2) ... 698s Selecting previously unselected package fonts-dejavu-mono. 698s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 698s Unpacking fonts-dejavu-mono (2.37-8) ... 698s Selecting previously unselected package fonts-dejavu-core. 698s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 698s Unpacking fonts-dejavu-core (2.37-8) ... 698s Selecting previously unselected package fontconfig-config. 698s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 699s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 699s Selecting previously unselected package libfontconfig1:amd64. 699s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 699s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 699s Selecting previously unselected package fontconfig. 699s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 699s Unpacking fontconfig (2.15.0-1ubuntu1) ... 699s Selecting previously unselected package fonts-font-awesome. 699s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 699s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 699s Selecting previously unselected package fonts-glyphicons-halflings. 699s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 699s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 699s Selecting previously unselected package fonts-lmodern. 699s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 699s Unpacking fonts-lmodern (2.005-1) ... 699s Selecting previously unselected package fonts-mathjax. 699s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 699s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 699s Selecting previously unselected package libgfortran5:amd64. 699s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 699s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 699s Selecting previously unselected package libgfortran-13-dev:amd64. 699s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 699s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 699s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 699s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 699s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 699s Selecting previously unselected package gfortran-13. 699s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 699s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 699s Selecting previously unselected package gfortran-x86-64-linux-gnu. 699s Preparing to unpack .../048-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 699s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 699s Selecting previously unselected package gfortran. 699s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 699s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 699s Selecting previously unselected package hdf5-helpers. 699s Preparing to unpack .../050-hdf5-helpers_1.10.10+repack-3ubuntu1_amd64.deb ... 699s Unpacking hdf5-helpers (1.10.10+repack-3ubuntu1) ... 699s Selecting previously unselected package icu-devtools. 699s Preparing to unpack .../051-icu-devtools_74.2-1ubuntu1_amd64.deb ... 699s Unpacking icu-devtools (74.2-1ubuntu1) ... 699s Selecting previously unselected package javascript-common. 699s Preparing to unpack .../052-javascript-common_11+nmu1_all.deb ... 699s Unpacking javascript-common (11+nmu1) ... 699s Selecting previously unselected package libaec0:amd64. 699s Preparing to unpack .../053-libaec0_1.1.2-1_amd64.deb ... 699s Unpacking libaec0:amd64 (1.1.2-1) ... 699s Selecting previously unselected package libio-string-perl. 699s Preparing to unpack .../054-libio-string-perl_1.08-4_all.deb ... 699s Unpacking libio-string-perl (1.08-4) ... 699s Selecting previously unselected package liblatex-tounicode-perl. 700s Preparing to unpack .../055-liblatex-tounicode-perl_0.54-2_all.deb ... 700s Unpacking liblatex-tounicode-perl (0.54-2) ... 700s Selecting previously unselected package libbibtex-parser-perl. 700s Preparing to unpack .../056-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 700s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 700s Selecting previously unselected package libblas3:amd64. 700s Preparing to unpack .../057-libblas3_3.12.0-3_amd64.deb ... 700s Unpacking libblas3:amd64 (3.12.0-3) ... 700s Selecting previously unselected package libblas-dev:amd64. 700s Preparing to unpack .../058-libblas-dev_3.12.0-3_amd64.deb ... 700s Unpacking libblas-dev:amd64 (3.12.0-3) ... 700s Selecting previously unselected package libsnappy1v5:amd64. 700s Preparing to unpack .../059-libsnappy1v5_1.1.10-1_amd64.deb ... 700s Unpacking libsnappy1v5:amd64 (1.1.10-1) ... 700s Selecting previously unselected package libblosc1:amd64. 700s Preparing to unpack .../060-libblosc1_1.21.5+ds-1_amd64.deb ... 700s Unpacking libblosc1:amd64 (1.21.5+ds-1) ... 700s Selecting previously unselected package libbz2-dev:amd64. 700s Preparing to unpack .../061-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 700s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 700s Selecting previously unselected package libpixman-1-0:amd64. 700s Preparing to unpack .../062-libpixman-1-0_0.42.2-1_amd64.deb ... 700s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 700s Selecting previously unselected package libxcb-render0:amd64. 700s Preparing to unpack .../063-libxcb-render0_1.15-1_amd64.deb ... 700s Unpacking libxcb-render0:amd64 (1.15-1) ... 700s Selecting previously unselected package libxcb-shm0:amd64. 700s Preparing to unpack .../064-libxcb-shm0_1.15-1_amd64.deb ... 700s Unpacking libxcb-shm0:amd64 (1.15-1) ... 700s Selecting previously unselected package libxrender1:amd64. 700s Preparing to unpack .../065-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 700s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 700s Selecting previously unselected package libcairo2:amd64. 700s Preparing to unpack .../066-libcairo2_1.18.0-1_amd64.deb ... 700s Unpacking libcairo2:amd64 (1.18.0-1) ... 700s Selecting previously unselected package libcurl4-openssl-dev:amd64. 700s Preparing to unpack .../067-libcurl4-openssl-dev_8.5.0-2ubuntu2_amd64.deb ... 700s Unpacking libcurl4-openssl-dev:amd64 (8.5.0-2ubuntu2) ... 700s Selecting previously unselected package libdatrie1:amd64. 700s Preparing to unpack .../068-libdatrie1_0.2.13-3_amd64.deb ... 700s Unpacking libdatrie1:amd64 (0.2.13-3) ... 700s Selecting previously unselected package libdeflate0:amd64. 700s Preparing to unpack .../069-libdeflate0_1.19-1_amd64.deb ... 700s Unpacking libdeflate0:amd64 (1.19-1) ... 700s Selecting previously unselected package libgraphite2-3:amd64. 700s Preparing to unpack .../070-libgraphite2-3_1.3.14-2_amd64.deb ... 700s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 700s Selecting previously unselected package libharfbuzz0b:amd64. 700s Preparing to unpack .../071-libharfbuzz0b_8.3.0-2_amd64.deb ... 700s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 700s Selecting previously unselected package libsz2:amd64. 700s Preparing to unpack .../072-libsz2_1.1.2-1_amd64.deb ... 700s Unpacking libsz2:amd64 (1.1.2-1) ... 700s Selecting previously unselected package libhdf5-103-1:amd64. 700s Preparing to unpack .../073-libhdf5-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 700s Unpacking libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 700s Selecting previously unselected package libhdf5-cpp-103-1:amd64. 700s Preparing to unpack .../074-libhdf5-cpp-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 700s Unpacking libhdf5-cpp-103-1:amd64 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package zlib1g-dev:amd64. 700s Preparing to unpack .../079-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 700s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 700s Selecting previously unselected package libjpeg-turbo8:amd64. 700s Preparing to unpack .../080-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 700s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 700s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 700s Preparing to unpack .../081-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 700s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 700s Selecting previously unselected package libjpeg8:amd64. 700s Preparing to unpack .../082-libjpeg8_8c-2ubuntu11_amd64.deb ... 700s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 700s Selecting previously unselected package libjpeg8-dev:amd64. 700s Preparing to unpack .../083-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 700s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 700s Selecting previously unselected package 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previously unselected package libjs-microplugin.js. 701s Preparing to unpack .../100-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 701s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 701s Selecting previously unselected package libjs-jquery-selectize.js. 701s Preparing to unpack .../101-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 701s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 701s Selecting previously unselected package libjs-jquery-ui. 701s Preparing to unpack .../102-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 701s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 701s Selecting previously unselected package libjs-json. 701s Preparing to unpack .../103-libjs-json_0~20221030+~1.0.8-1_all.deb ... 701s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 701s Selecting previously unselected package libjs-lunr. 701s Preparing to unpack .../104-libjs-lunr_2.3.9~dfsg-2_all.deb ... 701s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 701s Selecting previously unselected package 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702s Selecting previously unselected package libpcre2-posix3:amd64. 702s Preparing to unpack .../121-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 702s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 702s Selecting previously unselected package libpcre2-dev:amd64. 702s Preparing to unpack .../122-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 702s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 702s Selecting previously unselected package libpkgconf3:amd64. 702s Preparing to unpack .../123-libpkgconf3_1.8.1-2_amd64.deb ... 702s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 702s Selecting previously unselected package libpng-dev:amd64. 702s Preparing to unpack .../124-libpng-dev_1.6.43-1_amd64.deb ... 702s Unpacking libpng-dev:amd64 (1.6.43-1) ... 702s Selecting previously unselected package libpotrace0:amd64. 702s Preparing to unpack .../125-libpotrace0_1.16-2_amd64.deb ... 702s Unpacking libpotrace0:amd64 (1.16-2) ... 702s Selecting previously unselected package libptexenc1:amd64. 702s 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unpack .../142-libxpm4_1%3a3.5.17-1_amd64.deb ... 703s Unpacking libxpm4:amd64 (1:3.5.17-1) ... 703s Selecting previously unselected package libxaw7:amd64. 703s Preparing to unpack .../143-libxaw7_2%3a1.0.14-1_amd64.deb ... 703s Unpacking libxaw7:amd64 (2:1.0.14-1) ... 703s Selecting previously unselected package libxi6:amd64. 703s Preparing to unpack .../144-libxi6_2%3a1.8.1-1_amd64.deb ... 703s Unpacking libxi6:amd64 (2:1.8.1-1) ... 703s Selecting previously unselected package libzzip-0-13:amd64. 703s Preparing to unpack .../145-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... 703s Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 703s Selecting previously unselected package zip. 703s Preparing to unpack .../146-zip_3.0-13_amd64.deb ... 703s Unpacking zip (3.0-13) ... 703s Selecting previously unselected package unzip. 703s Preparing to unpack .../147-unzip_6.0-28ubuntu3_amd64.deb ... 703s Unpacking unzip (6.0-28ubuntu3) ... 703s Selecting previously unselected package xdg-utils. 703s Preparing to unpack .../148-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 703s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 703s Selecting previously unselected package r-base-core. 703s Preparing to unpack .../149-r-base-core_4.3.2-1build1_amd64.deb ... 703s Unpacking r-base-core (4.3.2-1build1) ... 703s Selecting previously unselected package r-cran-littler. 703s Preparing to unpack .../150-r-cran-littler_0.3.19-1_amd64.deb ... 703s Unpacking r-cran-littler (0.3.19-1) ... 703s Selecting previously unselected package littler. 703s Preparing to unpack .../151-littler_0.3.19-1_all.deb ... 703s Unpacking littler (0.3.19-1) ... 703s Selecting previously unselected package node-bootstrap-sass. 703s Preparing to unpack .../152-node-bootstrap-sass_3.4.3-2_all.deb ... 703s Unpacking node-bootstrap-sass (3.4.3-2) ... 703s Selecting previously unselected package node-html5shiv. 703s Preparing to unpack .../153-node-html5shiv_3.7.3+dfsg-5_all.deb ... 703s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 703s Selecting previously unselected package node-normalize.css. 703s Preparing to unpack .../154-node-normalize.css_8.0.1-5_all.deb ... 703s Unpacking node-normalize.css (8.0.1-5) ... 703s Selecting previously unselected package pandoc-data. 703s Preparing to unpack .../155-pandoc-data_3.1.3-1_all.deb ... 703s Unpacking pandoc-data (3.1.3-1) ... 704s Selecting previously unselected package pandoc. 704s Preparing to unpack .../156-pandoc_3.1.3+ds-2_amd64.deb ... 704s Unpacking pandoc (3.1.3+ds-2) ... 704s Selecting previously unselected package pkgconf-bin. 704s Preparing to unpack .../157-pkgconf-bin_1.8.1-2_amd64.deb ... 704s Unpacking pkgconf-bin (1.8.1-2) ... 704s Selecting previously unselected package pkgconf:amd64. 704s Preparing to unpack .../158-pkgconf_1.8.1-2_amd64.deb ... 704s Unpacking pkgconf:amd64 (1.8.1-2) ... 704s Selecting previously unselected package pkg-config:amd64. 704s Preparing to unpack .../159-pkg-config_1.8.1-2_amd64.deb ... 704s Unpacking pkg-config:amd64 (1.8.1-2) ... 704s Selecting previously unselected package liblzma-dev:amd64. 704s Preparing to unpack .../160-liblzma-dev_5.4.5-0.3_amd64.deb ... 704s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 704s Selecting previously unselected package r-base-dev. 704s Preparing to unpack .../161-r-base-dev_4.3.2-1build1_all.deb ... 704s Unpacking r-base-dev (4.3.2-1build1) ... 705s Selecting previously unselected package pkg-r-autopkgtest. 705s Preparing to unpack .../162-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 705s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 705s Selecting previously unselected package r-bioc-biocgenerics. 705s Preparing to unpack .../163-r-bioc-biocgenerics_0.48.1-2_all.deb ... 705s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 705s Selecting previously unselected package r-cran-base64enc. 705s Preparing to unpack .../164-r-cran-base64enc_0.1-3-3_amd64.deb ... 705s Unpacking r-cran-base64enc (0.1-3-3) ... 705s Selecting previously unselected package r-cran-digest. 705s Preparing to unpack .../165-r-cran-digest_0.6.34-1_amd64.deb ... 705s Unpacking r-cran-digest (0.6.34-1) ... 705s Selecting previously unselected package r-cran-rlang. 705s Preparing to unpack .../166-r-cran-rlang_1.1.3-1_amd64.deb ... 705s Unpacking r-cran-rlang (1.1.3-1) ... 705s Selecting previously unselected package r-cran-ellipsis. 705s Preparing to unpack .../167-r-cran-ellipsis_0.3.2-2_amd64.deb ... 705s Unpacking r-cran-ellipsis (0.3.2-2) ... 705s Selecting previously unselected package r-cran-fastmap. 705s Preparing to unpack .../168-r-cran-fastmap_1.1.1-1_amd64.deb ... 705s Unpacking r-cran-fastmap (1.1.1-1) ... 705s Selecting previously unselected package r-cran-htmltools. 705s Preparing to unpack .../169-r-cran-htmltools_0.5.7-1_amd64.deb ... 705s Unpacking r-cran-htmltools (0.5.7-1) ... 705s Selecting previously unselected package r-cran-evaluate. 705s Preparing to unpack .../170-r-cran-evaluate_0.23-1_all.deb ... 705s Unpacking r-cran-evaluate (0.23-1) ... 705s Selecting previously unselected package r-cran-xfun. 705s Preparing to unpack .../171-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 705s Unpacking r-cran-xfun (0.41+dfsg-1) ... 705s Selecting previously unselected package r-cran-highr. 705s Preparing to unpack .../172-r-cran-highr_0.10+dfsg-1_all.deb ... 705s Unpacking r-cran-highr (0.10+dfsg-1) ... 705s Selecting previously unselected package r-cran-yaml. 705s Preparing to unpack .../173-r-cran-yaml_2.3.8-1_amd64.deb ... 705s Unpacking r-cran-yaml (2.3.8-1) ... 705s Selecting previously unselected package libjs-mathjax. 705s Preparing to unpack .../174-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 705s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 706s Selecting previously unselected package r-cran-knitr. 706s Preparing to unpack .../175-r-cran-knitr_1.45+dfsg-1_all.deb ... 706s Unpacking r-cran-knitr (1.45+dfsg-1) ... 706s Selecting previously unselected package r-cran-cachem. 706s Preparing to unpack .../176-r-cran-cachem_1.0.8-1_amd64.deb ... 706s Unpacking r-cran-cachem (1.0.8-1) ... 706s Selecting previously unselected package r-cran-jquerylib. 706s Preparing to unpack .../177-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 706s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 706s Selecting previously unselected package r-cran-jsonlite. 706s Preparing to unpack .../178-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 706s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 706s Selecting previously unselected package r-cran-cli. 706s Preparing to unpack .../179-r-cran-cli_3.6.2-1_amd64.deb ... 706s Unpacking r-cran-cli (3.6.2-1) ... 706s Selecting previously unselected package r-cran-glue. 706s Preparing to unpack .../180-r-cran-glue_1.7.0-1_amd64.deb ... 706s Unpacking r-cran-glue (1.7.0-1) ... 706s Selecting previously unselected package r-cran-lifecycle. 706s Preparing to unpack .../181-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 706s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 706s Selecting previously unselected package r-cran-memoise. 706s Preparing to unpack .../182-r-cran-memoise_2.0.1-1_all.deb ... 706s Unpacking r-cran-memoise (2.0.1-1) ... 706s Selecting previously unselected package r-cran-mime. 706s Preparing to unpack .../183-r-cran-mime_0.12-1_amd64.deb ... 706s Unpacking r-cran-mime (0.12-1) ... 706s Selecting previously unselected package r-cran-fs. 706s Preparing to unpack .../184-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 706s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 706s Selecting previously unselected package r-cran-r6. 706s Preparing to unpack .../185-r-cran-r6_2.5.1-1_all.deb ... 706s Unpacking r-cran-r6 (2.5.1-1) ... 706s Selecting previously unselected package r-cran-rappdirs. 706s Preparing to unpack .../186-r-cran-rappdirs_0.3.3-1_amd64.deb ... 706s Unpacking r-cran-rappdirs (0.3.3-1) ... 706s Selecting previously unselected package r-cran-sass. 706s Preparing to unpack .../187-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 706s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 706s Selecting previously unselected package r-cran-bslib. 706s Preparing to unpack .../188-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 706s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 706s Selecting previously unselected package r-cran-fontawesome. 706s Preparing to unpack .../189-r-cran-fontawesome_0.5.2-1_all.deb ... 706s Unpacking r-cran-fontawesome (0.5.2-1) ... 706s Selecting previously unselected package r-cran-magrittr. 706s Preparing to unpack .../190-r-cran-magrittr_2.0.3-1_amd64.deb ... 706s Unpacking r-cran-magrittr (2.0.3-1) ... 706s Selecting previously unselected package r-cran-stringi. 706s Preparing to unpack .../191-r-cran-stringi_1.8.3-1_amd64.deb ... 706s Unpacking r-cran-stringi (1.8.3-1) ... 707s Selecting previously unselected package r-cran-vctrs. 707s Preparing to unpack .../192-r-cran-vctrs_0.6.5-1_amd64.deb ... 707s Unpacking r-cran-vctrs (0.6.5-1) ... 707s Selecting previously unselected package r-cran-stringr. 707s Preparing to unpack .../193-r-cran-stringr_1.5.1-1_all.deb ... 707s Unpacking r-cran-stringr (1.5.1-1) ... 707s Selecting previously unselected package r-cran-tinytex. 707s Preparing to unpack .../194-r-cran-tinytex_0.49-1_all.deb ... 707s Unpacking r-cran-tinytex (0.49-1) ... 707s Selecting previously unselected package libjs-modernizr. 707s Preparing to unpack .../195-libjs-modernizr_2.6.2+ds1-5_all.deb ... 707s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 707s Selecting previously unselected package r-cran-pkgkitten. 707s Preparing to unpack .../196-r-cran-pkgkitten_0.2.3-1_all.deb ... 707s Unpacking r-cran-pkgkitten (0.2.3-1) ... 707s Selecting previously unselected package r-cran-rcpp. 707s Preparing to unpack .../197-r-cran-rcpp_1.0.12-1_amd64.deb ... 707s Unpacking r-cran-rcpp (1.0.12-1) ... 707s Selecting previously unselected package r-cran-later. 707s Preparing to unpack .../198-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 707s Unpacking r-cran-later (1.3.2+dfsg-1) ... 707s Selecting previously unselected package r-cran-promises. 707s Preparing to unpack .../199-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 707s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 707s Selecting previously unselected package r-cran-httpuv. 707s Preparing to unpack .../200-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 707s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 707s Selecting previously unselected package r-cran-xtable. 707s Preparing to unpack .../201-r-cran-xtable_1%3a1.8-4-2_all.deb ... 707s Unpacking r-cran-xtable (1:1.8-4-2) ... 707s Selecting previously unselected package r-cran-sourcetools. 707s Preparing to unpack .../202-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 707s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 707s Selecting previously unselected package r-cran-crayon. 707s Preparing to unpack .../203-r-cran-crayon_1.5.2-1_all.deb ... 707s Unpacking r-cran-crayon (1.5.2-1) ... 707s Selecting previously unselected package r-cran-withr. 707s Preparing to unpack .../204-r-cran-withr_2.5.0-1_all.deb ... 707s Unpacking r-cran-withr (2.5.0-1) ... 707s Selecting previously unselected package r-cran-commonmark. 707s Preparing to unpack .../205-r-cran-commonmark_1.9.1-1_amd64.deb ... 707s Unpacking r-cran-commonmark (1.9.1-1) ... 707s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 707s Preparing to unpack .../206-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 707s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 707s Selecting previously unselected package r-cran-shiny. 707s Preparing to unpack .../207-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 707s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 707s Selecting previously unselected package r-cran-rmarkdown. 707s Preparing to unpack .../208-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 707s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 707s Selecting previously unselected package r-cran-bookdown. 707s Preparing to unpack .../209-r-cran-bookdown_0.37+dfsg-1_all.deb ... 707s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 708s Selecting previously unselected package r-cran-biocmanager. 708s Preparing to unpack .../210-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 708s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 708s Selecting previously unselected package tex-common. 708s Preparing to unpack .../211-tex-common_6.18_all.deb ... 708s Unpacking tex-common (6.18) ... 708s Selecting previously unselected package t1utils. 708s Preparing to unpack .../212-t1utils_1.41-4build2_amd64.deb ... 708s Unpacking t1utils (1.41-4build2) ... 708s Selecting previously unselected package texlive-binaries. 708s Preparing to unpack .../213-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 708s Unpacking texlive-binaries (2023.20230311.66589-9) ... 708s Selecting previously unselected package texlive-base. 708s Preparing to unpack .../214-texlive-base_2023.20240207-1_all.deb ... 708s Unpacking texlive-base (2023.20240207-1) ... 709s Selecting previously unselected package texlive-latex-base. 710s Preparing to unpack .../215-texlive-latex-base_2023.20240207-1_all.deb ... 710s Unpacking texlive-latex-base (2023.20240207-1) ... 710s Selecting previously unselected package texlive-bibtex-extra. 710s Preparing to unpack .../216-texlive-bibtex-extra_2023.20240207-1_all.deb ... 710s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 713s Selecting previously unselected package r-bioc-biocstyle. 713s Preparing to unpack .../217-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 713s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 713s Selecting previously unselected package r-cran-lattice. 713s Preparing to unpack .../218-r-cran-lattice_0.22-5-1_amd64.deb ... 713s Unpacking r-cran-lattice (0.22-5-1) ... 713s Selecting previously unselected package r-cran-matrix. 713s Preparing to unpack .../219-r-cran-matrix_1.6-5-1_amd64.deb ... 713s Unpacking r-cran-matrix (1.6-5-1) ... 713s Selecting previously unselected package r-cran-matrixstats. 713s Preparing to unpack .../220-r-cran-matrixstats_1.2.0-1_amd64.deb ... 713s Unpacking r-cran-matrixstats (1.2.0-1) ... 713s Selecting previously unselected package r-bioc-matrixgenerics. 713s Preparing to unpack .../221-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 713s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 714s Selecting previously unselected package r-bioc-s4vectors. 714s Preparing to unpack .../222-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 714s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 714s Selecting previously unselected package r-bioc-iranges. 714s Preparing to unpack .../223-r-bioc-iranges_2.36.0-1_amd64.deb ... 714s Unpacking r-bioc-iranges (2.36.0-1) ... 714s Selecting previously unselected package r-cran-abind. 714s Preparing to unpack .../224-r-cran-abind_1.4-5-2_all.deb ... 714s Unpacking r-cran-abind (1.4-5-2) ... 714s Selecting previously unselected package r-bioc-s4arrays. 714s Preparing to unpack .../225-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 714s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 714s Selecting previously unselected package r-bioc-zlibbioc. 714s Preparing to unpack .../226-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 714s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 714s Selecting previously unselected package r-bioc-xvector. 714s Preparing to unpack .../227-r-bioc-xvector_0.42.0-1_amd64.deb ... 714s Unpacking r-bioc-xvector (0.42.0-1) ... 714s Selecting previously unselected package r-bioc-sparsearray. 714s Preparing to unpack .../228-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 714s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 714s Selecting previously unselected package r-bioc-delayedarray. 714s Preparing to unpack .../229-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 714s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 714s Selecting previously unselected package r-bioc-sparsematrixstats. 714s Preparing to unpack .../230-r-bioc-sparsematrixstats_1.14.0+dfsg-1_amd64.deb ... 714s Unpacking r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 714s Selecting previously unselected package r-bioc-delayedmatrixstats. 714s Preparing to unpack .../231-r-bioc-delayedmatrixstats_1.24.0+ds-1_all.deb ... 714s Unpacking r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 714s Selecting previously unselected package r-bioc-rhdf5lib. 714s Preparing to unpack .../232-r-bioc-rhdf5lib_1.24.2+dfsg-1_amd64.deb ... 714s Unpacking r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 714s Selecting previously unselected package r-bioc-rhdf5filters. 714s Preparing to unpack .../233-r-bioc-rhdf5filters_1.14.1+dfsg-3_amd64.deb ... 714s Unpacking r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 714s Selecting previously unselected package r-bioc-rhdf5. 714s Preparing to unpack .../234-r-bioc-rhdf5_2.46.1+dfsg-1_amd64.deb ... 714s Unpacking r-bioc-rhdf5 (2.46.1+dfsg-1) ... 714s Selecting previously unselected package r-bioc-hdf5array. 714s Preparing to unpack .../235-r-bioc-hdf5array_1.30.1-1_amd64.deb ... 714s Unpacking r-bioc-hdf5array (1.30.1-1) ... 714s Selecting previously unselected package r-cran-brio. 714s Preparing to unpack .../236-r-cran-brio_1.1.4-1_amd64.deb ... 714s Unpacking r-cran-brio (1.1.4-1) ... 714s Selecting previously unselected package r-cran-ps. 714s Preparing to unpack .../237-r-cran-ps_1.7.6-1_amd64.deb ... 714s Unpacking r-cran-ps (1.7.6-1) ... 714s Selecting previously unselected package r-cran-processx. 714s Preparing to unpack .../238-r-cran-processx_3.8.3-1_amd64.deb ... 714s Unpacking r-cran-processx (3.8.3-1) ... 714s Selecting previously unselected package r-cran-callr. 714s Preparing to unpack .../239-r-cran-callr_3.7.3-2_all.deb ... 714s Unpacking r-cran-callr (3.7.3-2) ... 714s Selecting previously unselected package r-cran-desc. 714s Preparing to unpack .../240-r-cran-desc_1.4.3-1_all.deb ... 714s Unpacking r-cran-desc (1.4.3-1) ... 714s Selecting previously unselected package r-cran-diffobj. 714s Preparing to unpack .../241-r-cran-diffobj_0.3.5-1_amd64.deb ... 714s Unpacking r-cran-diffobj (0.3.5-1) ... 714s Selecting previously unselected package r-cran-fansi. 714s Preparing to unpack .../242-r-cran-fansi_1.0.5-1_amd64.deb ... 714s Unpacking r-cran-fansi (1.0.5-1) ... 714s Selecting previously unselected package r-cran-utf8. 714s Preparing to unpack .../243-r-cran-utf8_1.2.4-1_amd64.deb ... 714s Unpacking r-cran-utf8 (1.2.4-1) ... 714s Selecting previously unselected package r-cran-pillar. 714s Preparing to unpack .../244-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 714s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 715s Selecting previously unselected package r-cran-pkgbuild. 715s Preparing to unpack .../245-r-cran-pkgbuild_1.4.3-1_all.deb ... 715s Unpacking r-cran-pkgbuild (1.4.3-1) ... 715s Selecting previously unselected package r-cran-pkgconfig. 715s Preparing to unpack .../246-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 715s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 715s Selecting previously unselected package r-cran-rprojroot. 715s Preparing to unpack .../247-r-cran-rprojroot_2.0.4-1_all.deb ... 715s Unpacking r-cran-rprojroot (2.0.4-1) ... 715s Selecting previously unselected package r-cran-pkgload. 715s Preparing to unpack .../248-r-cran-pkgload_1.3.4-1_all.deb ... 715s Unpacking r-cran-pkgload (1.3.4-1) ... 715s Selecting previously unselected package r-cran-praise. 715s Preparing to unpack .../249-r-cran-praise_1.0.0-4build1_all.deb ... 715s Unpacking r-cran-praise (1.0.0-4build1) ... 715s Selecting previously unselected package r-cran-profmem. 715s Preparing to unpack .../250-r-cran-profmem_0.6.0+dfsg-1_all.deb ... 715s Unpacking r-cran-profmem (0.6.0+dfsg-1) ... 715s Selecting previously unselected package r-cran-tibble. 715s Preparing to unpack .../251-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 715s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 715s Selecting previously unselected package r-cran-rematch2. 715s Preparing to unpack .../252-r-cran-rematch2_2.1.2-2build1_all.deb ... 715s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 715s Selecting previously unselected package r-cran-waldo. 715s Preparing to unpack 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triggers for tex-common (6.18) ... 723s Running updmap-sys. This may take some time... done. 723s Running mktexlsr /var/lib/texmf ... done. 723s Building format(s) --all. 753s This may take some time... done. 768s Reading package lists... 768s Building dependency tree... 768s Reading state information... 768s Starting pkgProblemResolver with broken count: 0 768s Starting 2 pkgProblemResolver with broken count: 0 768s Done 769s The following NEW packages will be installed: 769s autopkgtest-satdep 769s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 769s Need to get 0 B/696 B of archives. 769s After this operation, 0 B of additional disk space will be used. 769s Get:1 /tmp/autopkgtest.gRTTF9/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 769s Selecting previously unselected package autopkgtest-satdep. 769s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 101708 files and directories currently installed.) 769s Preparing to unpack .../2-autopkgtest-satdep.deb ... 769s Unpacking autopkgtest-satdep (0) ... 769s Setting up autopkgtest-satdep (0) ... 771s (Reading database ... 101708 files and directories currently installed.) 771s Removing autopkgtest-satdep (0) ... 771s autopkgtest [02:25:35]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 771s autopkgtest [02:25:35]: test pkg-r-autopkgtest: [----------------------- 771s Test: Try to load the R library DelayedMatrixStats 771s 771s R version 4.3.2 (2023-10-31) -- "Eye Holes" 771s Copyright (C) 2023 The R Foundation for Statistical Computing 771s Platform: x86_64-pc-linux-gnu (64-bit) 771s 771s R is free software and comes with ABSOLUTELY NO WARRANTY. 771s You are welcome to redistribute it under certain conditions. 771s Type 'license()' or 'licence()' for distribution details. 771s 771s R is a collaborative project with many contributors. 771s Type 'contributors()' for more information and 771s 'citation()' on how to cite R or R packages in publications. 771s 771s Type 'demo()' for some demos, 'help()' for on-line help, or 771s 'help.start()' for an HTML browser interface to help. 771s Type 'q()' to quit R. 771s 771s > library('DelayedMatrixStats') 771s Loading required package: MatrixGenerics 771s Loading required package: matrixStats 771s 771s Attaching package: ‘MatrixGenerics’ 771s 771s The following objects are masked from ‘package:matrixStats’: 771s 771s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 771s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 771s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 771s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 771s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 771s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 771s colWeightedMeans, colWeightedMedians, colWeightedSds, 771s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 771s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 771s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 771s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 771s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 771s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 771s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 771s rowWeightedSds, rowWeightedVars 771s 771s Loading required package: DelayedArray 771s Loading required package: stats4 771s Loading required package: Matrix 772s Loading required package: BiocGenerics 772s 772s Attaching package: ‘BiocGenerics’ 772s 772s The following objects are masked from ‘package:stats’: 772s 772s IQR, mad, sd, var, xtabs 772s 772s The following objects are masked from ‘package:base’: 772s 772s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 772s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 772s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 772s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 772s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 772s table, tapply, union, unique, unsplit, which.max, which.min 772s 772s Loading required package: S4Vectors 773s 773s Attaching package: ‘S4Vectors’ 773s 773s The following objects are masked from ‘package:Matrix’: 773s 773s expand, unname 773s 773s The following object is masked from ‘package:utils’: 773s 773s findMatches 773s 773s The following objects are masked from ‘package:base’: 773s 773s expand.grid, I, unname 773s 773s Loading required package: IRanges 774s Loading required package: S4Arrays 774s Loading required package: abind 774s 774s Attaching package: ‘S4Arrays’ 774s 774s The following object is masked from ‘package:abind’: 774s 774s abind 774s 774s The following object is masked from ‘package:base’: 774s 774s rowsum 774s 774s Loading required package: SparseArray 775s 775s Attaching package: ‘DelayedArray’ 775s 775s The following objects are masked from ‘package:base’: 775s 775s apply, scale, sweep 775s 776s 776s Attaching package: ‘DelayedMatrixStats’ 776s 776s The following objects are masked from ‘package:matrixStats’: 776s 776s colAnyMissings, rowAnyMissings 776s 776s > 776s > 776s Other tests are currently unsupported! 776s They will be progressively added. 776s autopkgtest [02:25:40]: test pkg-r-autopkgtest: -----------------------] 776s autopkgtest [02:25:40]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 776s pkg-r-autopkgtest PASS 776s autopkgtest [02:25:40]: @@@@@@@@@@@@@@@@@@@@ summary 776s pkg-r-autopkgtest PASS 790s Creating nova instance adt-noble-i386-r-bioc-delayedmatrixstats-20240322-021244-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...