0s autopkgtest [02:07:00]: starting date and time: 2024-03-22 02:07:00+0000 0s autopkgtest [02:07:00]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [02:07:00]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1fdybbff/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-decontam --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-87.secgroup --name adt-noble-i386-r-bioc-decontam-20240322-020700-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 411s autopkgtest [02:13:51]: testbed dpkg architecture: amd64 411s autopkgtest [02:13:51]: testbed apt version: 2.7.12 412s autopkgtest [02:13:52]: test architecture: i386 412s autopkgtest [02:13:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup 412s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 412s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 412s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3762 kB] 412s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 412s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 412s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB] 412s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB] 412s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 412s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 412s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 412s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 412s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1269 kB] 412s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4236 kB] 412s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 412s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 412s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 412s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 415s Fetched 11.3 MB in 2s (7317 kB/s) 416s Reading package lists... 418s Reading package lists... 418s Building dependency tree... 418s Reading state information... 418s Calculating upgrade... 419s The following packages will be upgraded: 419s cloud-init fonts-ubuntu-console python3-markupsafe 419s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 419s Need to get 629 kB of archives. 419s After this operation, 11.3 kB disk space will be freed. 419s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 419s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 419s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 419s Preconfiguring packages ... 419s Fetched 629 kB in 0s (16.7 MB/s) 419s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 419s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 419s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 419s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 419s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 419s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 420s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 420s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 420s Setting up cloud-init (24.1.2-0ubuntu1) ... 421s Setting up python3-markupsafe (2.1.5-1build1) ... 422s Processing triggers for man-db (2.12.0-3) ... 422s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 423s Reading package lists... 423s Building dependency tree... 423s Reading state information... 424s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 425s sh: Attempting to set up Debian/Ubuntu apt sources automatically 425s Reading package lists...sh: Distribution appears to be Ubuntu 425s 426s Building dependency tree... 426s Reading state information... 426s eatmydata is already the newest version (131-1). 426s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 426s Reading package lists... 426s Building dependency tree... 426s Reading state information... 427s dbus is already the newest version (1.14.10-4ubuntu1). 427s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 427s Reading package lists... 427s Building dependency tree... 427s Reading state information... 428s rng-tools-debian is already the newest version (2.4). 428s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 428s Reading package lists... 428s Building dependency tree... 428s Reading state information... 429s The following packages will be REMOVED: 429s cloud-init* python3-configobj* python3-debconf* 429s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 429s After this operation, 3256 kB disk space will be freed. 429s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 429s Removing cloud-init (24.1.2-0ubuntu1) ... 430s Removing python3-configobj (5.0.8-3) ... 430s Removing python3-debconf (1.5.86) ... 430s Processing triggers for man-db (2.12.0-3) ... 430s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 430s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 431s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 431s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 431s invoke-rc.d: policy-rc.d denied execution of try-restart. 431s Reading package lists... 431s Building dependency tree... 431s Reading state information... 431s linux-generic is already the newest version (6.8.0-11.11+1). 431s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 432s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 432s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 432s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 434s Reading package lists... 434s Reading package lists... 434s Building dependency tree... 434s Reading state information... 434s Calculating upgrade... 434s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 434s Reading package lists... 435s Building dependency tree... 435s Reading state information... 435s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 435s autopkgtest [02:14:15]: rebooting testbed after setup commands that affected boot 457s autopkgtest [02:14:37]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 457s autopkgtest [02:14:37]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-decontam 458s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-decontam 1.22.0+dfsg-2 (dsc) [2140 B] 458s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-decontam 1.22.0+dfsg-2 (tar) [160 kB] 458s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-decontam 1.22.0+dfsg-2 (diff) [4928 B] 458s gpgv: Signature made Mon Feb 12 10:26:02 2024 UTC 458s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 458s gpgv: issuer "tille@debian.org" 458s gpgv: Can't check signature: No public key 458s dpkg-source: warning: cannot verify inline signature for ./r-bioc-decontam_1.22.0+dfsg-2.dsc: no acceptable signature found 459s autopkgtest [02:14:39]: testing package r-bioc-decontam version 1.22.0+dfsg-2 460s autopkgtest [02:14:40]: build not needed 464s autopkgtest [02:14:44]: test pkg-r-autopkgtest: preparing testbed 469s Note, using file '/tmp/autopkgtest.o1Yj1L/1-autopkgtest-satdep.dsc' to get the build dependencies 470s Reading package lists... 470s Building dependency tree... 470s Reading state information... 470s Starting pkgProblemResolver with broken count: 0 470s Starting 2 pkgProblemResolver with broken count: 0 470s Done 471s The following NEW packages will be installed: 471s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 471s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 471s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 471s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 471s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 471s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 471s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 471s libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 471s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 471s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 471s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 471s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 471s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 471s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 471s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 471s libjs-popper.js libjs-prettify libjs-sifter.js 471s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 471s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 471s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 471s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 471s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 471s libpotrace0 libptexenc1 libquadmath0 libreadline-dev libsharpyuv0 libsm6 471s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 471s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 471s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 471s libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass 471s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 471s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-biobase 471s r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biomformat r-bioc-biostrings 471s r-bioc-decontam r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges 471s r-bioc-multtest r-bioc-phyloseq r-bioc-s4vectors r-bioc-xvector 471s r-bioc-zlibbioc r-cran-ade4 r-cran-ape r-cran-base64enc r-cran-biocmanager 471s r-cran-bitops r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 471s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 471s r-cran-cpp11 r-cran-crayon r-cran-data.table r-cran-digest r-cran-ellipsis 471s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome 471s r-cran-foreach r-cran-fs r-cran-ggplot2 r-cran-glue r-cran-gtable 471s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-igraph r-cran-isoband 471s r-cran-iterators r-cran-jquerylib r-cran-jsonlite r-cran-knitr 471s r-cran-labeling r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 471s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-memoise r-cran-mgcv 471s r-cran-mime r-cran-munsell r-cran-nlme r-cran-permute r-cran-pillar 471s r-cran-pixmap r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-promises 471s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 471s r-cran-rcpparmadillo r-cran-rcurl r-cran-reshape2 r-cran-rlang 471s r-cran-rmarkdown r-cran-sass r-cran-scales r-cran-shiny r-cran-sourcetools 471s r-cran-sp r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble 471s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-vegan r-cran-viridislite 471s r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml rpcsvc-proto t1utils 471s tex-common texlive-base texlive-bibtex-extra texlive-binaries 471s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 471s 0 upgraded, 254 newly installed, 0 to remove and 0 not upgraded. 471s Need to get 414 MB of archives. 471s After this operation, 1179 MB of additional disk space will be used. 471s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 471s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 471s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 471s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 471s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 471s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 471s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 471s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 471s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 471s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 471s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 471s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 471s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 471s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 471s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 471s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 471s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 471s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 471s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 471s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 471s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 471s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 471s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 471s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 471s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 471s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 471s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 471s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 471s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 471s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 471s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 471s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 471s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 471s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 471s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 471s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 471s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 471s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 471s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 471s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 471s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 471s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 471s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 471s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 471s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 471s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 471s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 471s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 471s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 471s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 471s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 471s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 471s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 471s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 471s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 471s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 471s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 471s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 471s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 471s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 471s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 471s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 471s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 471s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 471s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 471s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 471s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 471s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 471s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 471s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 472s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 472s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 472s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 472s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 472s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 472s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 472s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 472s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 472s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 472s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 472s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 472s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 472s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 472s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 472s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 472s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 472s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 472s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 472s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 472s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 472s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 472s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 472s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 472s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 472s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 472s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 472s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 472s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 472s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 472s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 472s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 472s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 472s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 472s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 472s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 472s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 472s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 472s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 472s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 472s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 472s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 472s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 472s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 472s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 472s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 472s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 472s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 472s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 472s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 472s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 472s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 472s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 472s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 472s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 472s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 472s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 472s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 472s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 472s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 472s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 472s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 472s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 472s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 472s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 472s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 472s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 472s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 472s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 472s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 472s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 472s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 472s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 472s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 472s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 472s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 472s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 472s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 472s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 472s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 472s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 472s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 472s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 472s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 472s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 472s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 472s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 472s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 472s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 472s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 472s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 472s Get:161 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 473s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 473s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 473s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 473s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 473s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 473s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 473s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 473s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 473s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 473s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 473s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 473s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 473s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 473s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 473s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 473s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 473s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 473s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 473s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 473s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 473s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 473s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 473s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 473s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 473s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 473s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 473s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 473s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 473s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 473s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 473s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 473s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 473s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 473s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 473s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 473s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 473s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 473s Get:199 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 473s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 473s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 473s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 473s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 474s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 474s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 474s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 474s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 474s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomformat all 1.30.0+dfsg-1 [226 kB] 474s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 474s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 474s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 474s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 474s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 474s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 474s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 475s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 475s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 475s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 475s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 475s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 475s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 475s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 475s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 475s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 475s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 475s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 475s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 475s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 475s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 475s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 475s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 475s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 475s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 475s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 475s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 475s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 475s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-decontam all 1.22.0+dfsg-2 [210 kB] 475s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 475s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-multtest amd64 2.58.0-1 [836 kB] 475s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pixmap all 0.4-12-1 [201 kB] 475s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sp amd64 1:2.1-2+dfsg-1 [1447 kB] 475s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpparmadillo amd64 0.12.8.0.0-1 [862 kB] 475s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ade4 amd64 1.7-22-1 [5333 kB] 475s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ape amd64 5.7-1-1 [2892 kB] 475s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cluster amd64 2.1.6-1 [554 kB] 475s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-data.table amd64 1.14.10+dfsg-1 [1837 kB] 475s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 475s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-iterators all 1.0.14-1 [336 kB] 475s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-foreach all 1.5.2-1 [124 kB] 475s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 475s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-igraph amd64 1.6.0-1 [4399 kB] 475s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-permute all 0.9-7-1 [228 kB] 475s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vegan amd64 2.6-4+dfsg-1 [3089 kB] 475s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-phyloseq all 1.46.0+dfsg-1 [2192 kB] 476s Preconfiguring packages ... 476s Fetched 414 MB in 5s (91.0 MB/s) 476s Selecting previously unselected package libc-dev-bin. 476s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 476s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 476s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 476s Selecting previously unselected package linux-libc-dev:amd64. 476s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 476s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 476s Selecting previously unselected package libcrypt-dev:amd64. 476s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 476s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 477s Selecting previously unselected package libtirpc-dev:amd64. 477s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 477s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 477s Selecting previously unselected package libnsl-dev:amd64. 477s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 477s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 477s Selecting previously unselected package rpcsvc-proto. 477s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 477s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 477s Selecting previously unselected package libc6-dev:amd64. 477s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 477s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 477s Selecting previously unselected package libisl23:amd64. 477s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 477s Unpacking libisl23:amd64 (0.26-3) ... 477s Selecting previously unselected package libmpc3:amd64. 477s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 477s Unpacking libmpc3:amd64 (1.3.1-1) ... 477s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 477s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 477s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 477s Selecting previously unselected package cpp-13. 477s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 477s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 477s Selecting previously unselected package cpp-x86-64-linux-gnu. 477s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 477s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 477s Selecting previously unselected package cpp. 477s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 477s Unpacking cpp (4:13.2.0-7ubuntu1) ... 477s Selecting previously unselected package libcc1-0:amd64. 477s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 477s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 477s Selecting previously unselected package libgomp1:amd64. 477s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 477s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 477s Selecting previously unselected package libitm1:amd64. 477s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 477s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 477s Selecting previously unselected package libatomic1:amd64. 477s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 477s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 477s Selecting previously unselected package libasan8:amd64. 477s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 477s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 477s Selecting previously unselected package liblsan0:amd64. 477s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 477s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 477s Selecting previously unselected package libtsan2:amd64. 477s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 477s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 477s Selecting previously unselected package libubsan1:amd64. 477s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 477s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 477s Selecting previously unselected package libhwasan0:amd64. 478s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 478s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 478s Selecting previously unselected package libquadmath0:amd64. 478s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 478s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 478s Selecting previously unselected package libgcc-13-dev:amd64. 478s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 478s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 478s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 478s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 478s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 478s Selecting previously unselected package gcc-13. 478s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 478s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 478s Selecting previously unselected package gcc-x86-64-linux-gnu. 478s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 478s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 478s Selecting previously unselected package gcc. 478s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 478s Unpacking gcc (4:13.2.0-7ubuntu1) ... 478s Selecting previously unselected package libstdc++-13-dev:amd64. 478s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 478s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 478s Selecting previously unselected package g++-13-x86-64-linux-gnu. 478s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 478s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 479s Selecting previously unselected package g++-13. 479s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 479s Unpacking g++-13 (13.2.0-17ubuntu2) ... 479s Selecting previously unselected package g++-x86-64-linux-gnu. 479s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 479s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 479s Selecting previously unselected package g++. 479s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 479s Unpacking g++ (4:13.2.0-7ubuntu1) ... 479s Selecting previously unselected package build-essential. 479s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 479s Unpacking build-essential (12.10ubuntu1) ... 479s Selecting previously unselected package dctrl-tools. 479s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 479s Unpacking dctrl-tools (2.24-3build2) ... 479s Selecting previously unselected package fonts-dejavu-mono. 479s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 479s Unpacking fonts-dejavu-mono (2.37-8) ... 479s Selecting previously unselected package fonts-dejavu-core. 479s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 479s Unpacking fonts-dejavu-core (2.37-8) ... 479s Selecting previously unselected package fontconfig-config. 479s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 479s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 479s Selecting previously unselected package libfontconfig1:amd64. 479s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 479s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 479s Selecting previously unselected package fontconfig. 479s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 479s Unpacking fontconfig (2.15.0-1ubuntu1) ... 479s Selecting previously unselected package fonts-font-awesome. 479s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 479s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 479s Selecting previously unselected package fonts-glyphicons-halflings. 479s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 479s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 479s Selecting previously unselected package fonts-lmodern. 479s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 479s Unpacking fonts-lmodern (2.005-1) ... 479s Selecting previously unselected package fonts-mathjax. 479s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 479s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 480s Selecting previously unselected package libgfortran5:amd64. 480s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 480s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 480s Selecting previously unselected package libgfortran-13-dev:amd64. 480s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 480s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 480s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 480s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 480s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 480s Selecting previously unselected package gfortran-13. 480s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 480s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 480s Selecting previously unselected package gfortran-x86-64-linux-gnu. 480s Preparing to unpack .../048-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 480s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 480s Selecting previously unselected package gfortran. 480s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 480s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 480s Selecting previously unselected package icu-devtools. 480s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_amd64.deb ... 480s Unpacking icu-devtools (74.2-1ubuntu1) ... 480s Selecting previously unselected package javascript-common. 480s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 480s Unpacking javascript-common (11+nmu1) ... 480s Selecting previously unselected package libio-string-perl. 480s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 480s Unpacking libio-string-perl (1.08-4) ... 480s Selecting previously unselected package liblatex-tounicode-perl. 480s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 480s Unpacking liblatex-tounicode-perl (0.54-2) ... 480s Selecting previously unselected package libbibtex-parser-perl. 480s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 480s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 480s Selecting previously unselected package libblas3:amd64. 480s Preparing to unpack .../055-libblas3_3.12.0-3_amd64.deb ... 480s Unpacking libblas3:amd64 (3.12.0-3) ... 480s Selecting previously unselected package libblas-dev:amd64. 480s Preparing to unpack .../056-libblas-dev_3.12.0-3_amd64.deb ... 480s Unpacking libblas-dev:amd64 (3.12.0-3) ... 480s Selecting previously unselected package libbz2-dev:amd64. 480s Preparing to unpack .../057-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 480s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 480s Selecting previously unselected package libpixman-1-0:amd64. 480s Preparing to unpack .../058-libpixman-1-0_0.42.2-1_amd64.deb ... 480s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 480s Selecting previously unselected package libxcb-render0:amd64. 480s Preparing to unpack .../059-libxcb-render0_1.15-1_amd64.deb ... 480s Unpacking libxcb-render0:amd64 (1.15-1) ... 480s Selecting previously unselected package libxcb-shm0:amd64. 481s Preparing to unpack .../060-libxcb-shm0_1.15-1_amd64.deb ... 481s Unpacking libxcb-shm0:amd64 (1.15-1) ... 481s Selecting previously unselected package libxrender1:amd64. 481s Preparing to unpack .../061-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 481s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 481s Selecting previously unselected package libcairo2:amd64. 481s Preparing to unpack .../062-libcairo2_1.18.0-1_amd64.deb ... 481s Unpacking libcairo2:amd64 (1.18.0-1) ... 481s Selecting previously unselected package libdatrie1:amd64. 481s Preparing to unpack .../063-libdatrie1_0.2.13-3_amd64.deb ... 481s Unpacking libdatrie1:amd64 (0.2.13-3) ... 481s Selecting previously unselected package libdeflate0:amd64. 481s Preparing to unpack .../064-libdeflate0_1.19-1_amd64.deb ... 481s Unpacking libdeflate0:amd64 (1.19-1) ... 481s Selecting previously unselected package libgraphite2-3:amd64. 481s Preparing to unpack .../065-libgraphite2-3_1.3.14-2_amd64.deb ... 481s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 481s Selecting previously unselected package libharfbuzz0b:amd64. 481s Preparing to unpack .../066-libharfbuzz0b_8.3.0-2_amd64.deb ... 481s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 481s Selecting previously unselected package x11-common. 481s Preparing to unpack .../067-x11-common_1%3a7.7+23ubuntu2_all.deb ... 481s Unpacking x11-common (1:7.7+23ubuntu2) ... 481s Selecting previously unselected package libice6:amd64. 481s Preparing to unpack .../068-libice6_2%3a1.0.10-1build2_amd64.deb ... 481s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 481s Selecting previously unselected package libicu-dev:amd64. 481s Preparing to unpack .../069-libicu-dev_74.2-1ubuntu1_amd64.deb ... 481s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 481s Selecting previously unselected package libjpeg-turbo8:amd64. 481s Preparing to unpack .../070-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 481s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 481s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 481s Preparing to unpack .../071-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 481s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 481s Selecting previously unselected package libjpeg8:amd64. 481s Preparing to unpack .../072-libjpeg8_8c-2ubuntu11_amd64.deb ... 481s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 481s Selecting previously unselected package libjpeg8-dev:amd64. 481s Preparing to unpack .../073-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 481s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 481s Selecting previously unselected package libjpeg-dev:amd64. 481s Preparing to unpack .../074-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 481s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 481s Selecting previously unselected package libjs-bootstrap. 481s Preparing to unpack .../075-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 481s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 481s Selecting previously unselected package libjs-popper.js. 481s Preparing to unpack .../076-libjs-popper.js_1.16.1+ds-6_all.deb ... 481s Unpacking libjs-popper.js (1.16.1+ds-6) ... 481s Selecting previously unselected package libjs-bootstrap4. 481s Preparing to unpack .../077-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 481s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 481s Selecting previously unselected package libjs-d3. 481s Preparing to unpack .../078-libjs-d3_3.5.17-4_all.deb ... 481s Unpacking libjs-d3 (3.5.17-4) ... 482s Selecting previously unselected package libjs-es5-shim. 482s Preparing to unpack .../079-libjs-es5-shim_4.6.7-2_all.deb ... 482s Unpacking libjs-es5-shim (4.6.7-2) ... 482s Selecting previously unselected package libjs-highlight.js. 482s Preparing to unpack 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(1.51.0+ds-4) ... 483s Selecting previously unselected package libpaper1:amd64. 483s Preparing to unpack .../101-libpaper1_1.1.29_amd64.deb ... 483s Unpacking libpaper1:amd64 (1.1.29) ... 483s Selecting previously unselected package libpaper-utils. 483s Preparing to unpack .../102-libpaper-utils_1.1.29_amd64.deb ... 483s Unpacking libpaper-utils (1.1.29) ... 483s Selecting previously unselected package libpcre2-16-0:amd64. 483s Preparing to unpack .../103-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 483s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 483s Selecting previously unselected package libpcre2-32-0:amd64. 483s Preparing to unpack .../104-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 483s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 483s Selecting previously unselected package libpcre2-posix3:amd64. 483s Preparing to unpack .../105-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 483s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 483s Selecting previously unselected package libpcre2-dev:amd64. 483s Preparing to unpack .../106-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 483s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 483s Selecting previously unselected package libpkgconf3:amd64. 483s Preparing to unpack .../107-libpkgconf3_1.8.1-2_amd64.deb ... 483s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 483s Selecting previously unselected package zlib1g-dev:amd64. 483s Preparing to unpack .../108-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 483s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 483s Selecting previously unselected package libpng-dev:amd64. 483s Preparing to unpack .../109-libpng-dev_1.6.43-1_amd64.deb ... 483s Unpacking libpng-dev:amd64 (1.6.43-1) ... 483s Selecting previously unselected package libpotrace0:amd64. 483s Preparing to unpack .../110-libpotrace0_1.16-2_amd64.deb ... 483s Unpacking libpotrace0:amd64 (1.16-2) ... 483s Selecting previously unselected package libptexenc1:amd64. 483s Preparing to unpack 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Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 483s Selecting previously unselected package libxft2:amd64. 483s Preparing to unpack .../122-libxft2_2.3.6-1_amd64.deb ... 483s Unpacking libxft2:amd64 (2.3.6-1) ... 483s Selecting previously unselected package libxss1:amd64. 483s Preparing to unpack .../123-libxss1_1%3a1.2.3-1build2_amd64.deb ... 483s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 483s Selecting previously unselected package libtk8.6:amd64. 483s Preparing to unpack .../124-libtk8.6_8.6.13-2_amd64.deb ... 483s Unpacking libtk8.6:amd64 (8.6.13-2) ... 483s Selecting previously unselected package libxt6:amd64. 483s Preparing to unpack .../125-libxt6_1%3a1.2.1-1.1_amd64.deb ... 483s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 483s Selecting previously unselected package libxmu6:amd64. 483s Preparing to unpack .../126-libxmu6_2%3a1.1.3-3_amd64.deb ... 483s Unpacking libxmu6:amd64 (2:1.1.3-3) ... 483s Selecting previously unselected package libxpm4:amd64. 483s Preparing to unpack .../127-libxpm4_1%3a3.5.17-1_amd64.deb ... 483s Unpacking libxpm4:amd64 (1:3.5.17-1) ... 483s Selecting previously unselected package libxaw7:amd64. 483s Preparing to unpack .../128-libxaw7_2%3a1.0.14-1_amd64.deb ... 483s Unpacking libxaw7:amd64 (2:1.0.14-1) ... 484s Selecting previously unselected package libxi6:amd64. 484s Preparing to unpack .../129-libxi6_2%3a1.8.1-1_amd64.deb ... 484s Unpacking libxi6:amd64 (2:1.8.1-1) ... 484s Selecting previously unselected package libzzip-0-13:amd64. 484s Preparing to unpack .../130-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... 484s Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 484s Selecting previously unselected package zip. 484s Preparing to unpack .../131-zip_3.0-13_amd64.deb ... 484s Unpacking zip (3.0-13) ... 484s Selecting previously unselected package unzip. 484s Preparing to unpack .../132-unzip_6.0-28ubuntu3_amd64.deb ... 484s Unpacking unzip (6.0-28ubuntu3) ... 484s Selecting previously unselected package xdg-utils. 484s Preparing to unpack .../133-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 484s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 484s Selecting previously unselected package r-base-core. 484s Preparing to unpack .../134-r-base-core_4.3.2-1build1_amd64.deb ... 484s Unpacking r-base-core (4.3.2-1build1) ... 484s Selecting previously unselected package r-cran-littler. 484s Preparing to unpack .../135-r-cran-littler_0.3.19-1_amd64.deb ... 484s Unpacking r-cran-littler (0.3.19-1) ... 484s Selecting previously unselected package littler. 484s Preparing to unpack .../136-littler_0.3.19-1_all.deb ... 484s Unpacking littler (0.3.19-1) ... 484s Selecting previously unselected package node-bootstrap-sass. 484s Preparing to unpack .../137-node-bootstrap-sass_3.4.3-2_all.deb ... 484s Unpacking node-bootstrap-sass (3.4.3-2) ... 484s Selecting previously unselected package node-html5shiv. 484s Preparing to unpack .../138-node-html5shiv_3.7.3+dfsg-5_all.deb ... 484s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 484s Selecting previously unselected package node-normalize.css. 484s Preparing to unpack .../139-node-normalize.css_8.0.1-5_all.deb ... 484s Unpacking node-normalize.css (8.0.1-5) ... 484s Selecting previously unselected package pandoc-data. 484s Preparing to unpack .../140-pandoc-data_3.1.3-1_all.deb ... 484s Unpacking pandoc-data (3.1.3-1) ... 484s Selecting previously unselected package pandoc. 484s Preparing to unpack .../141-pandoc_3.1.3+ds-2_amd64.deb ... 484s Unpacking pandoc (3.1.3+ds-2) ... 485s Selecting previously unselected package pkgconf-bin. 485s Preparing to unpack .../142-pkgconf-bin_1.8.1-2_amd64.deb ... 485s Unpacking pkgconf-bin (1.8.1-2) ... 485s Selecting previously unselected package pkgconf:amd64. 485s Preparing to unpack .../143-pkgconf_1.8.1-2_amd64.deb ... 485s Unpacking pkgconf:amd64 (1.8.1-2) ... 485s Selecting previously unselected package pkg-config:amd64. 485s Preparing to unpack .../144-pkg-config_1.8.1-2_amd64.deb ... 485s Unpacking pkg-config:amd64 (1.8.1-2) ... 485s Selecting previously unselected package liblzma-dev:amd64. 485s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_amd64.deb ... 485s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 485s Selecting previously unselected package r-base-dev. 485s Preparing to unpack .../146-r-base-dev_4.3.2-1build1_all.deb ... 485s Unpacking r-base-dev (4.3.2-1build1) ... 485s Selecting previously unselected package pkg-r-autopkgtest. 485s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 485s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 485s Selecting previously unselected package r-bioc-biocgenerics. 485s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 485s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 485s Selecting previously unselected package r-bioc-biobase. 485s Preparing to unpack .../149-r-bioc-biobase_2.62.0-1_amd64.deb ... 485s Unpacking r-bioc-biobase (2.62.0-1) ... 485s Selecting previously unselected package r-cran-base64enc. 485s Preparing to unpack .../150-r-cran-base64enc_0.1-3-3_amd64.deb ... 485s Unpacking r-cran-base64enc (0.1-3-3) ... 485s Selecting previously unselected package r-cran-digest. 485s Preparing to unpack .../151-r-cran-digest_0.6.34-1_amd64.deb ... 485s Unpacking r-cran-digest (0.6.34-1) ... 486s Selecting previously unselected package r-cran-rlang. 486s Preparing to unpack .../152-r-cran-rlang_1.1.3-1_amd64.deb ... 486s Unpacking r-cran-rlang (1.1.3-1) ... 486s Selecting previously unselected package r-cran-ellipsis. 486s Preparing to unpack .../153-r-cran-ellipsis_0.3.2-2_amd64.deb ... 486s Unpacking r-cran-ellipsis (0.3.2-2) ... 486s Selecting previously unselected package r-cran-fastmap. 486s Preparing to unpack .../154-r-cran-fastmap_1.1.1-1_amd64.deb ... 486s Unpacking r-cran-fastmap (1.1.1-1) ... 486s Selecting previously unselected package r-cran-htmltools. 486s Preparing to unpack .../155-r-cran-htmltools_0.5.7-1_amd64.deb ... 486s Unpacking r-cran-htmltools (0.5.7-1) ... 486s Selecting previously unselected package r-cran-evaluate. 486s Preparing to unpack .../156-r-cran-evaluate_0.23-1_all.deb ... 486s Unpacking r-cran-evaluate (0.23-1) ... 486s Selecting previously unselected package r-cran-xfun. 486s Preparing to unpack .../157-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 486s Unpacking r-cran-xfun (0.41+dfsg-1) ... 486s Selecting previously unselected package r-cran-highr. 486s Preparing to unpack .../158-r-cran-highr_0.10+dfsg-1_all.deb ... 486s Unpacking r-cran-highr (0.10+dfsg-1) ... 486s Selecting previously unselected package r-cran-yaml. 486s Preparing to unpack .../159-r-cran-yaml_2.3.8-1_amd64.deb ... 486s Unpacking r-cran-yaml (2.3.8-1) ... 486s Selecting previously unselected package libjs-mathjax. 486s Preparing to unpack .../160-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 486s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 487s Selecting previously unselected package r-cran-knitr. 487s Preparing to unpack .../161-r-cran-knitr_1.45+dfsg-1_all.deb ... 487s Unpacking r-cran-knitr (1.45+dfsg-1) ... 487s Selecting previously unselected package r-cran-cachem. 487s Preparing to unpack .../162-r-cran-cachem_1.0.8-1_amd64.deb ... 487s Unpacking r-cran-cachem (1.0.8-1) ... 487s Selecting previously unselected package r-cran-jquerylib. 487s Preparing to unpack .../163-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 487s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 487s Selecting previously unselected package r-cran-jsonlite. 487s Preparing to unpack .../164-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 487s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 487s Selecting previously unselected package r-cran-cli. 487s Preparing to unpack .../165-r-cran-cli_3.6.2-1_amd64.deb ... 487s Unpacking r-cran-cli (3.6.2-1) ... 487s Selecting previously unselected package r-cran-glue. 487s Preparing to unpack .../166-r-cran-glue_1.7.0-1_amd64.deb ... 487s Unpacking r-cran-glue (1.7.0-1) ... 487s Selecting previously unselected package r-cran-lifecycle. 487s Preparing to unpack .../167-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 487s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 487s Selecting previously unselected package r-cran-memoise. 487s Preparing to unpack .../168-r-cran-memoise_2.0.1-1_all.deb ... 487s Unpacking r-cran-memoise (2.0.1-1) ... 487s Selecting previously unselected package r-cran-mime. 487s Preparing to unpack .../169-r-cran-mime_0.12-1_amd64.deb ... 487s Unpacking r-cran-mime (0.12-1) ... 487s Selecting previously unselected package r-cran-fs. 487s Preparing to unpack .../170-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 487s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 487s Selecting previously unselected package r-cran-r6. 487s Preparing to unpack .../171-r-cran-r6_2.5.1-1_all.deb ... 487s Unpacking r-cran-r6 (2.5.1-1) ... 487s Selecting previously unselected package r-cran-rappdirs. 487s Preparing to unpack .../172-r-cran-rappdirs_0.3.3-1_amd64.deb ... 487s Unpacking r-cran-rappdirs (0.3.3-1) ... 487s Selecting previously unselected package r-cran-sass. 487s Preparing to unpack .../173-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 487s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 487s Selecting previously unselected package r-cran-bslib. 487s Preparing to unpack .../174-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 487s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 487s Selecting previously unselected package r-cran-fontawesome. 487s Preparing to unpack .../175-r-cran-fontawesome_0.5.2-1_all.deb ... 487s Unpacking r-cran-fontawesome (0.5.2-1) ... 487s Selecting previously unselected package r-cran-magrittr. 487s Preparing to unpack .../176-r-cran-magrittr_2.0.3-1_amd64.deb ... 487s Unpacking r-cran-magrittr (2.0.3-1) ... 487s Selecting previously unselected package r-cran-stringi. 487s Preparing to unpack .../177-r-cran-stringi_1.8.3-1_amd64.deb ... 487s Unpacking r-cran-stringi (1.8.3-1) ... 487s Selecting previously unselected package r-cran-vctrs. 488s Preparing to unpack .../178-r-cran-vctrs_0.6.5-1_amd64.deb ... 488s Unpacking r-cran-vctrs (0.6.5-1) ... 488s Selecting previously unselected package r-cran-stringr. 488s Preparing to unpack .../179-r-cran-stringr_1.5.1-1_all.deb ... 488s Unpacking r-cran-stringr (1.5.1-1) ... 488s Selecting previously unselected package r-cran-tinytex. 488s Preparing to unpack .../180-r-cran-tinytex_0.49-1_all.deb ... 488s Unpacking r-cran-tinytex (0.49-1) ... 488s Selecting previously unselected package libjs-modernizr. 488s Preparing to unpack .../181-libjs-modernizr_2.6.2+ds1-5_all.deb ... 488s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 488s Selecting previously unselected package r-cran-pkgkitten. 488s Preparing to unpack .../182-r-cran-pkgkitten_0.2.3-1_all.deb ... 488s Unpacking r-cran-pkgkitten (0.2.3-1) ... 488s Selecting previously unselected package r-cran-rcpp. 488s Preparing to unpack .../183-r-cran-rcpp_1.0.12-1_amd64.deb ... 488s Unpacking r-cran-rcpp (1.0.12-1) ... 488s Selecting previously unselected package r-cran-later. 488s Preparing to unpack .../184-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 488s Unpacking r-cran-later (1.3.2+dfsg-1) ... 488s Selecting previously unselected package r-cran-promises. 488s Preparing to unpack .../185-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 488s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 488s Selecting previously unselected package r-cran-httpuv. 488s Preparing to unpack .../186-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 488s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 488s Selecting previously unselected package r-cran-xtable. 488s Preparing to unpack .../187-r-cran-xtable_1%3a1.8-4-2_all.deb ... 488s Unpacking r-cran-xtable (1:1.8-4-2) ... 488s Selecting previously unselected package r-cran-sourcetools. 488s Preparing to unpack .../188-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 488s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 488s Selecting previously unselected package r-cran-crayon. 488s Preparing to unpack .../189-r-cran-crayon_1.5.2-1_all.deb ... 488s Unpacking r-cran-crayon (1.5.2-1) ... 488s Selecting previously unselected package r-cran-withr. 488s Preparing to unpack .../190-r-cran-withr_2.5.0-1_all.deb ... 488s Unpacking r-cran-withr (2.5.0-1) ... 488s Selecting previously unselected package r-cran-commonmark. 488s Preparing to unpack .../191-r-cran-commonmark_1.9.1-1_amd64.deb ... 488s Unpacking r-cran-commonmark (1.9.1-1) ... 488s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 488s Preparing to unpack .../192-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 488s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 488s Selecting previously unselected package r-cran-shiny. 488s Preparing to unpack .../193-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 488s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 488s Selecting previously unselected package r-cran-rmarkdown. 488s Preparing to unpack .../194-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 488s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 489s Selecting previously unselected package r-cran-bookdown. 489s Preparing to unpack .../195-r-cran-bookdown_0.37+dfsg-1_all.deb ... 489s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 489s Selecting previously unselected package r-cran-biocmanager. 489s Preparing to unpack .../196-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 489s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 489s Selecting previously unselected package tex-common. 489s Preparing to unpack .../197-tex-common_6.18_all.deb ... 489s Unpacking tex-common (6.18) ... 489s Selecting previously unselected package t1utils. 489s Preparing to unpack .../198-t1utils_1.41-4build2_amd64.deb ... 489s Unpacking t1utils (1.41-4build2) ... 489s Selecting previously unselected package texlive-binaries. 489s Preparing to unpack .../199-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 489s Unpacking texlive-binaries (2023.20230311.66589-9) ... 489s Selecting previously unselected package texlive-base. 489s Preparing to unpack .../200-texlive-base_2023.20240207-1_all.deb ... 489s Unpacking texlive-base (2023.20240207-1) ... 491s Selecting previously unselected package texlive-latex-base. 491s Preparing to unpack .../201-texlive-latex-base_2023.20240207-1_all.deb ... 491s Unpacking texlive-latex-base (2023.20240207-1) ... 491s Selecting previously unselected package texlive-bibtex-extra. 491s Preparing to unpack .../202-texlive-bibtex-extra_2023.20240207-1_all.deb ... 491s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 495s Selecting previously unselected package r-bioc-biocstyle. 495s Preparing to unpack .../203-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 495s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 495s Selecting previously unselected package r-cran-plyr. 495s Preparing to unpack .../204-r-cran-plyr_1.8.9-1_amd64.deb ... 495s Unpacking r-cran-plyr (1.8.9-1) ... 495s Selecting previously unselected package r-cran-lattice. 495s Preparing to unpack .../205-r-cran-lattice_0.22-5-1_amd64.deb ... 495s Unpacking r-cran-lattice (0.22-5-1) ... 495s Selecting previously unselected package r-cran-matrix. 495s Preparing to unpack .../206-r-cran-matrix_1.6-5-1_amd64.deb ... 495s Unpacking r-cran-matrix (1.6-5-1) ... 495s Selecting previously unselected package r-bioc-biomformat. 495s Preparing to unpack .../207-r-bioc-biomformat_1.30.0+dfsg-1_all.deb ... 495s Unpacking r-bioc-biomformat (1.30.0+dfsg-1) ... 495s Selecting previously unselected package r-bioc-s4vectors. 495s Preparing to unpack .../208-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 495s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 495s Selecting previously unselected package r-bioc-iranges. 495s Preparing to unpack .../209-r-bioc-iranges_2.36.0-1_amd64.deb ... 495s Unpacking r-bioc-iranges (2.36.0-1) ... 495s Selecting previously unselected package r-bioc-zlibbioc. 495s Preparing to unpack .../210-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 495s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 495s Selecting previously unselected package r-bioc-xvector. 495s Preparing to unpack .../211-r-bioc-xvector_0.42.0-1_amd64.deb ... 495s Unpacking r-bioc-xvector (0.42.0-1) ... 495s Selecting previously unselected package r-cran-bitops. 495s Preparing to unpack .../212-r-cran-bitops_1.0-7-1_amd64.deb ... 495s Unpacking r-cran-bitops (1.0-7-1) ... 495s Selecting previously unselected package r-cran-rcurl. 495s Preparing to unpack .../213-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 495s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 495s Selecting previously unselected package r-bioc-genomeinfodbdata. 495s Preparing to unpack .../214-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 495s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 495s Selecting previously unselected package r-bioc-genomeinfodb. 495s Preparing to unpack .../215-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 495s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 495s Selecting previously unselected package r-bioc-biostrings. 495s Preparing to unpack .../216-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 495s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 495s Selecting previously unselected package r-cran-gtable. 495s Preparing to unpack .../217-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 495s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 495s Selecting previously unselected package r-cran-isoband. 495s Preparing to unpack .../218-r-cran-isoband_0.2.7-1_amd64.deb ... 495s Unpacking r-cran-isoband (0.2.7-1) ... 495s Selecting previously unselected package r-cran-mass. 495s Preparing to unpack .../219-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 495s Unpacking r-cran-mass (7.3-60.0.1-1) ... 495s Selecting previously unselected package r-cran-nlme. 495s Preparing to unpack .../220-r-cran-nlme_3.1.164-1_amd64.deb ... 495s Unpacking r-cran-nlme (3.1.164-1) ... 495s Selecting previously unselected package r-cran-mgcv. 496s Preparing to unpack .../221-r-cran-mgcv_1.9-1-1_amd64.deb ... 496s Unpacking r-cran-mgcv (1.9-1-1) ... 496s Selecting previously unselected package r-cran-farver. 496s Preparing to unpack .../222-r-cran-farver_2.1.1-1_amd64.deb ... 496s Unpacking r-cran-farver (2.1.1-1) ... 496s Selecting previously unselected package r-cran-labeling. 496s Preparing to unpack .../223-r-cran-labeling_0.4.3-1_all.deb ... 496s Unpacking r-cran-labeling (0.4.3-1) ... 496s Selecting previously unselected package r-cran-colorspace. 496s Preparing to unpack .../224-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 496s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 496s Selecting previously unselected package r-cran-munsell. 496s Preparing to unpack .../225-r-cran-munsell_0.5.0-2build1_all.deb ... 496s Unpacking r-cran-munsell (0.5.0-2build1) ... 496s Selecting previously unselected package r-cran-rcolorbrewer. 496s Preparing to unpack .../226-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 496s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 496s Selecting previously unselected package r-cran-viridislite. 496s Preparing to unpack .../227-r-cran-viridislite_0.4.2-2_all.deb ... 496s Unpacking r-cran-viridislite (0.4.2-2) ... 496s Selecting previously unselected package r-cran-scales. 496s Preparing to unpack .../228-r-cran-scales_1.3.0-1_all.deb ... 496s Unpacking r-cran-scales (1.3.0-1) ... 496s Selecting previously unselected package r-cran-fansi. 496s Preparing to unpack .../229-r-cran-fansi_1.0.5-1_amd64.deb ... 496s Unpacking r-cran-fansi (1.0.5-1) ... 496s Selecting previously unselected package r-cran-utf8. 496s Preparing to unpack .../230-r-cran-utf8_1.2.4-1_amd64.deb ... 496s Unpacking r-cran-utf8 (1.2.4-1) ... 496s Selecting previously unselected package r-cran-pillar. 496s Preparing to unpack .../231-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 496s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 496s Selecting previously unselected package r-cran-pkgconfig. 496s Preparing to unpack .../232-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 496s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 496s Selecting previously unselected package r-cran-tibble. 496s Preparing to unpack .../233-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 496s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 496s Selecting previously unselected package r-cran-ggplot2. 496s Preparing to unpack .../234-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 496s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 496s Selecting previously unselected package r-cran-reshape2. 496s Preparing to unpack .../235-r-cran-reshape2_1.4.4-2build1_amd64.deb ... 496s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 496s Selecting previously unselected package r-bioc-decontam. 496s Preparing to unpack .../236-r-bioc-decontam_1.22.0+dfsg-2_all.deb ... 496s Unpacking r-bioc-decontam (1.22.0+dfsg-2) ... 496s Selecting previously unselected package r-cran-survival. 496s Preparing to unpack .../237-r-cran-survival_3.5-8-1_amd64.deb ... 496s Unpacking r-cran-survival (3.5-8-1) ... 496s Selecting previously unselected package r-bioc-multtest. 496s Preparing to unpack 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up build-essential (12.10ubuntu1) ... 503s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ... 503s Setting up r-bioc-iranges (2.36.0-1) ... 503s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 503s Setting up r-cran-vctrs (0.6.5-1) ... 503s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 503s Setting up r-cran-ellipsis (0.3.2-2) ... 503s Setting up r-base-dev (4.3.2-1build1) ... 503s Setting up r-cran-stringr (1.5.1-1) ... 503s Setting up r-bioc-biomformat (1.30.0+dfsg-1) ... 503s Setting up r-cran-munsell (0.5.0-2build1) ... 503s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 503s Setting up r-cran-survival (3.5-8-1) ... 503s Setting up r-cran-igraph (1.6.0-1) ... 503s Setting up r-cran-ade4 (1.7-22-1) ... 503s Setting up texlive-bibtex-extra (2023.20240207-1) ... 503s Setting up r-cran-reshape2 (1.4.4-2build1) ... 503s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 503s Setting up r-cran-scales (1.3.0-1) ... 503s Setting up r-cran-memoise (2.0.1-1) ... 503s Setting up r-cran-promises (1.2.1+dfsg-1) ... 503s Setting up r-cran-vegan (2.6-4+dfsg-1) ... 503s Setting up r-cran-htmltools (0.5.7-1) ... 503s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 503s Setting up r-bioc-xvector (0.42.0-1) ... 503s Setting up r-cran-sass (0.4.8+dfsg-1) ... 503s Setting up r-bioc-multtest (2.58.0-1) ... 503s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 503s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 503s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 503s Setting up r-cran-fontawesome (0.5.2-1) ... 503s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 503s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 503s Setting up r-bioc-decontam (1.22.0+dfsg-2) ... 503s Setting up r-bioc-phyloseq (1.46.0+dfsg-1) ... 503s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 503s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 503s Setting up r-cran-bookdown (0.37+dfsg-1) ... 503s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 503s Processing triggers for libc-bin (2.39-0ubuntu2) ... 503s Processing triggers for man-db (2.12.0-3) ... 505s Processing triggers for install-info (7.1-3) ... 505s Processing triggers for tex-common (6.18) ... 505s Running updmap-sys. This may take some time... done. 505s Running mktexlsr /var/lib/texmf ... done. 505s Building format(s) --all. 536s This may take some time... done. 542s Reading package lists... 543s Building dependency tree... 543s Reading state information... 543s Starting pkgProblemResolver with broken count: 0 545s Starting 2 pkgProblemResolver with broken count: 0 547s Done 547s The following NEW packages will be installed: 547s autopkgtest-satdep 547s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 547s Need to get 0 B/696 B of archives. 547s After this operation, 0 B of additional disk space will be used. 547s Get:1 /tmp/autopkgtest.o1Yj1L/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 547s Selecting previously unselected package autopkgtest-satdep. 547s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 103330 files and directories currently installed.) 547s Preparing to unpack .../2-autopkgtest-satdep.deb ... 547s Unpacking autopkgtest-satdep (0) ... 547s Setting up autopkgtest-satdep (0) ... 547s (Reading database ... 103330 files and directories currently installed.) 547s Removing autopkgtest-satdep (0) ... 547s autopkgtest [02:16:07]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 547s autopkgtest [02:16:07]: test pkg-r-autopkgtest: [----------------------- 547s Test: Try to load the R library decontam 547s 547s R version 4.3.2 (2023-10-31) -- "Eye Holes" 547s Copyright (C) 2023 The R Foundation for Statistical Computing 547s Platform: x86_64-pc-linux-gnu (64-bit) 547s 547s R is free software and comes with ABSOLUTELY NO WARRANTY. 547s You are welcome to redistribute it under certain conditions. 547s Type 'license()' or 'licence()' for distribution details. 547s 547s R is a collaborative project with many contributors. 547s Type 'contributors()' for more information and 547s 'citation()' on how to cite R or R packages in publications. 547s 547s Type 'demo()' for some demos, 'help()' for on-line help, or 547s 'help.start()' for an HTML browser interface to help. 547s Type 'q()' to quit R. 547s 547s > library('decontam') 548s > 548s > 548s Other tests are currently unsupported! 548s They will be progressively added. 548s autopkgtest [02:16:08]: test pkg-r-autopkgtest: -----------------------] 548s pkg-r-autopkgtest PASS 548s autopkgtest [02:16:08]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 548s autopkgtest [02:16:08]: @@@@@@@@@@@@@@@@@@@@ summary 548s pkg-r-autopkgtest PASS 559s Creating nova instance adt-noble-i386-r-bioc-decontam-20240322-020700-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...