0s autopkgtest [02:03:07]: starting date and time: 2024-03-22 02:03:07+0000 0s autopkgtest [02:03:07]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [02:03:07]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.vcaqvxn8/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-cummerbund --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-55.secgroup --name adt-noble-i386-r-bioc-cummerbund-20240322-020306-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 227s autopkgtest [02:06:54]: testbed dpkg architecture: amd64 227s autopkgtest [02:06:54]: testbed apt version: 2.7.12 227s autopkgtest [02:06:54]: test architecture: i386 227s autopkgtest [02:06:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 228s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 228s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 228s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 228s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3801 kB] 228s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 228s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB] 228s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB] 228s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 228s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 228s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 228s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 228s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4251 kB] 228s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1280 kB] 228s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 228s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 228s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 228s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 231s Fetched 11.3 MB in 1s (7956 kB/s) 231s Reading package lists... 233s Reading package lists... 233s Building dependency tree... 233s Reading state information... 234s Calculating upgrade... 234s The following packages will be upgraded: 234s cloud-init fonts-ubuntu-console python3-markupsafe 234s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 234s Need to get 629 kB of archives. 234s After this operation, 11.3 kB disk space will be freed. 234s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 234s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 234s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 234s Preconfiguring packages ... 234s Fetched 629 kB in 0s (17.1 MB/s) 235s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 235s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 235s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 235s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 235s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 235s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 235s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 235s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 235s Setting up cloud-init (24.1.2-0ubuntu1) ... 237s Setting up python3-markupsafe (2.1.5-1build1) ... 237s Processing triggers for man-db (2.12.0-3) ... 237s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 238s Reading package lists... 238s Building dependency tree... 238s Reading state information... 238s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 239s sh: Attempting to set up Debian/Ubuntu apt sources automatically 239s sh: Distribution appears to be Ubuntu 240s Reading package lists... 240s Building dependency tree... 240s Reading state information... 240s eatmydata is already the newest version (131-1). 240s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 240s Reading package lists... 240s Building dependency tree... 240s Reading state information... 241s dbus is already the newest version (1.14.10-4ubuntu1). 241s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 241s Reading package lists... 241s Building dependency tree... 241s Reading state information... 241s rng-tools-debian is already the newest version (2.4). 241s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 241s Reading package lists... 242s Building dependency tree... 242s Reading state information... 242s The following packages will be REMOVED: 242s cloud-init* python3-configobj* python3-debconf* 242s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 242s After this operation, 3256 kB disk space will be freed. 242s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 242s Removing cloud-init (24.1.2-0ubuntu1) ... 243s Removing python3-configobj (5.0.8-3) ... 243s Removing python3-debconf (1.5.86) ... 243s Processing triggers for man-db (2.12.0-3) ... 243s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 243s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 244s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 244s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 244s invoke-rc.d: policy-rc.d denied execution of try-restart. 244s Reading package lists... 244s Building dependency tree... 244s Reading state information... 245s linux-generic is already the newest version (6.8.0-11.11+1). 245s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 245s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 245s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 245s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 247s Reading package lists... 247s Reading package lists... 247s Building dependency tree... 247s Reading state information... 248s Calculating upgrade... 248s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 248s Reading package lists... 248s Building dependency tree... 248s Reading state information... 248s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 249s autopkgtest [02:07:16]: rebooting testbed after setup commands that affected boot 272s autopkgtest [02:07:39]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 273s autopkgtest [02:07:40]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-cummerbund 274s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-cummerbund 2.44.0-1 (dsc) [2269 B] 274s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-cummerbund 2.44.0-1 (tar) [2446 kB] 274s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-cummerbund 2.44.0-1 (diff) [4376 B] 274s gpgv: Signature made Fri Dec 8 15:15:07 2023 UTC 274s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 274s gpgv: issuer "tille@debian.org" 274s gpgv: Can't check signature: No public key 274s dpkg-source: warning: cannot verify inline signature for ./r-bioc-cummerbund_2.44.0-1.dsc: no acceptable signature found 275s autopkgtest [02:07:42]: testing package r-bioc-cummerbund version 2.44.0-1 279s autopkgtest [02:07:46]: build not needed 282s autopkgtest [02:07:49]: test pkg-r-autopkgtest: preparing testbed 287s Note, using file '/tmp/autopkgtest.ellQ4o/1-autopkgtest-satdep.dsc' to get the build dependencies 287s Reading package lists... 287s Building dependency tree... 287s Reading state information... 288s Starting pkgProblemResolver with broken count: 0 288s Starting 2 pkgProblemResolver with broken count: 0 288s Done 288s The following NEW packages will be installed: 288s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 288s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 288s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 288s g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 288s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 288s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 288s javascript-common libasan8 libatomic1 libblas-dev libblas3 libboost-dev 288s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 288s libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 288s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 288s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 288s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 288s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 288s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 288s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 288s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 288s liblapack-dev liblapack3 liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 288s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 288s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 288s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 288s libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 288s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 288s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 288s linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css 288s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 288s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter 288s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 288s r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase 288s r-bioc-bsgenome r-bioc-cummerbund r-bioc-delayedarray r-bioc-ensembldb 288s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 288s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-iranges 288s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib 288s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 288s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 288s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass 288s r-cran-backports r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 288s r-cran-bitops r-cran-blob r-cran-bslib r-cran-cachem r-cran-checkmate 288s r-cran-chron r-cran-cli r-cran-cluster r-cran-codetools r-cran-colorspace 288s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table 288s r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-dichromat r-cran-digest 288s r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver 288s r-cran-fastcluster r-cran-fastmap r-cran-filelock r-cran-fontawesome 288s r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger 288s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 288s r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-hms 288s r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv 288s r-cran-httr r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jquerylib 288s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 288s r-cran-lattice r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle 288s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 288s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 288s r-cran-nnet r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten 288s r-cran-plogr r-cran-plyr r-cran-png r-cran-prettyunits r-cran-progress 288s r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer 288s r-cran-rcpp r-cran-rcppeigen r-cran-rcurl r-cran-reshape2 r-cran-restfulr 288s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rsqlite 288s r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 288s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 288s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 288s r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-withr r-cran-xfun 288s r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip 288s x11-common xdg-utils zip zlib1g-dev 288s 0 upgraded, 298 newly installed, 0 to remove and 0 not upgraded. 288s Need to get 368 MB of archives. 288s After this operation, 1176 MB of additional disk space will be used. 288s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 288s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 288s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 288s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 288s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 288s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 288s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 288s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 288s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 288s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 289s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 289s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 289s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 289s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 289s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 289s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 289s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 289s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 289s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 289s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 289s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 289s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 289s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 289s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 289s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 289s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 289s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 289s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 289s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 289s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 289s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 289s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 289s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 289s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 289s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 289s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 289s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 289s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 289s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 289s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 289s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 289s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 289s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 289s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 289s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 289s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 289s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 289s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 289s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 289s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 289s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 289s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 289s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 289s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 289s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 289s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 289s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 289s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 289s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 289s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 289s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 289s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 289s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 289s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 289s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 289s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 289s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 289s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 289s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 289s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 289s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 289s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 289s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 289s Get:74 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 289s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 289s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 289s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 289s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 289s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 289s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 289s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 289s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 289s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 289s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 289s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 289s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 289s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 289s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 289s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 289s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 289s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 289s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 289s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 289s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 289s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 289s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 289s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 289s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 289s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 289s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 289s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 289s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 289s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 289s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 289s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 289s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 289s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 289s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 289s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 289s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 289s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 289s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 289s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 289s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 289s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 289s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 289s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 289s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 289s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 289s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 289s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 290s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 290s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 290s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 290s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 290s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 290s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 290s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 290s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 290s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 290s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 290s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 290s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 290s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 290s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 290s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 290s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 290s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 290s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 290s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 290s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 290s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 290s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 290s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 290s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 290s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 290s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 290s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 290s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 290s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 290s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 290s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 290s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 290s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 290s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 290s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 290s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 290s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 290s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 290s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 290s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 290s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 290s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 290s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 290s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 290s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 290s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 290s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 290s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 290s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 290s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 290s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 290s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 290s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 290s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 290s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 290s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 290s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 290s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 290s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 290s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 290s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 290s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 290s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 290s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 290s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 290s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 290s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 290s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 290s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 290s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 290s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 290s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 290s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 290s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 290s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 290s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 290s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 290s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 290s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 290s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 290s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 290s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 290s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 290s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 290s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 290s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 290s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 290s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 290s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 290s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 290s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 290s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 290s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 290s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 290s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 290s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 290s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 290s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 290s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 290s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 290s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 290s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 290s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 291s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cluster amd64 2.1.6-1 [554 kB] 291s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 291s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rpart amd64 4.1.23-1 [661 kB] 291s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nnet amd64 7.3-19-2 [112 kB] 291s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-foreign amd64 0.8.86-1 [242 kB] 291s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 291s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-data.table amd64 1.14.10+dfsg-1 [1837 kB] 291s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 291s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 291s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 291s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 291s Get:236 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 291s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 291s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-backports amd64 1.4.1-1 [101 kB] 291s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-checkmate amd64 2.3.1-1 [713 kB] 291s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 291s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 291s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 291s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 291s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 291s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 291s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 291s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 291s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 291s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 291s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 291s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 291s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 291s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 291s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 291s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 291s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 291s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 291s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 291s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 291s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 291s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 291s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rstudioapi all 0.15.0-1 [277 kB] 291s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltable all 2.4.2-1 [381 kB] 291s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 291s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 291s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-chron amd64 2.3-61-2 [186 kB] 291s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 291s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-deldir amd64 2.0-4-1 [270 kB] 291s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppeigen amd64 0.3.3.9.4-1 [1189 kB] 291s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 291s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 291s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-acepack amd64 1.4.2-1 [61.3 kB] 291s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hmisc amd64 5.1-1-1 [3491 kB] 291s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 291s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 291s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 291s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 291s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 291s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 291s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 291s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 291s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 291s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 291s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 291s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 291s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 291s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 291s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 291s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 291s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-variantannotation amd64 1.48.1-1 [3527 kB] 291s Get:291 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 291s Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 291s Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biovizbase amd64 1.50.0-1 [2665 kB] 291s Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 291s Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 291s Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastcluster amd64 1.2.6-1 [192 kB] 291s Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-gviz all 1.46.1+dfsg-1 [4855 kB] 291s Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-cummerbund all 2.44.0-1 [2538 kB] 292s Preconfiguring packages ... 292s Fetched 368 MB in 3s (127 MB/s) 292s Selecting previously unselected package libc-dev-bin. 292s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 292s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 292s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 292s Selecting previously unselected package linux-libc-dev:amd64. 292s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 292s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 292s Selecting previously unselected package libcrypt-dev:amd64. 292s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 292s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 293s Selecting previously unselected package libtirpc-dev:amd64. 293s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 293s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 293s Selecting previously unselected package libnsl-dev:amd64. 293s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 293s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 293s Selecting previously unselected package rpcsvc-proto. 293s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 293s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 293s Selecting previously unselected package libc6-dev:amd64. 293s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 293s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 293s Selecting previously unselected package libisl23:amd64. 293s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 293s Unpacking libisl23:amd64 (0.26-3) ... 293s Selecting previously unselected package libmpc3:amd64. 293s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 293s Unpacking libmpc3:amd64 (1.3.1-1) ... 293s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 293s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 293s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 293s Selecting previously unselected package cpp-13. 293s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 293s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 293s Selecting previously unselected package cpp-x86-64-linux-gnu. 293s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 293s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 293s Selecting previously unselected package cpp. 293s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 293s Unpacking cpp (4:13.2.0-7ubuntu1) ... 293s Selecting previously unselected package libcc1-0:amd64. 293s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 293s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 293s Selecting previously unselected package libgomp1:amd64. 293s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 293s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 293s Selecting previously unselected package libitm1:amd64. 293s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 293s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 293s Selecting previously unselected package libatomic1:amd64. 293s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 293s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 293s Selecting previously unselected package libasan8:amd64. 293s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 293s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 293s Selecting previously unselected package liblsan0:amd64. 293s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 293s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 293s Selecting previously unselected package libtsan2:amd64. 293s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 293s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 293s Selecting previously unselected package libubsan1:amd64. 293s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 293s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 294s Selecting previously unselected package libhwasan0:amd64. 294s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 294s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 294s Selecting previously unselected package libquadmath0:amd64. 294s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 294s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 294s Selecting previously unselected package libgcc-13-dev:amd64. 294s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 294s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 294s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 294s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 294s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 294s Selecting previously unselected package gcc-13. 294s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 294s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 294s Selecting previously unselected package gcc-x86-64-linux-gnu. 294s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 294s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 294s Selecting previously unselected package gcc. 294s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 294s Unpacking gcc (4:13.2.0-7ubuntu1) ... 294s Selecting previously unselected package libstdc++-13-dev:amd64. 294s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 294s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 294s Selecting previously unselected package g++-13-x86-64-linux-gnu. 294s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 294s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 295s Selecting previously unselected package g++-13. 295s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 295s Unpacking g++-13 (13.2.0-17ubuntu2) ... 295s Selecting previously unselected package g++-x86-64-linux-gnu. 295s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 295s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 295s Selecting previously unselected package g++. 295s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 295s Unpacking g++ (4:13.2.0-7ubuntu1) ... 295s Selecting previously unselected package build-essential. 295s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 295s Unpacking build-essential (12.10ubuntu1) ... 295s Selecting previously unselected package dctrl-tools. 295s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 295s Unpacking dctrl-tools (2.24-3build2) ... 295s Selecting previously unselected package fonts-dejavu-mono. 295s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 295s Unpacking fonts-dejavu-mono (2.37-8) ... 295s Selecting previously unselected package fonts-dejavu-core. 295s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 295s Unpacking fonts-dejavu-core (2.37-8) ... 295s Selecting previously unselected package fontconfig-config. 295s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 295s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 295s Selecting previously unselected package libfontconfig1:amd64. 295s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 295s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 295s Selecting previously unselected package fontconfig. 295s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 295s Unpacking fontconfig (2.15.0-1ubuntu1) ... 295s Selecting previously unselected package fonts-font-awesome. 295s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 295s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 295s Selecting previously unselected package fonts-glyphicons-halflings. 295s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 295s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 295s Selecting previously unselected package fonts-mathjax. 295s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 295s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 296s Selecting previously unselected package libgfortran5:amd64. 296s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_amd64.deb 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previously unselected package libxrender1:amd64. 299s Preparing to unpack .../059-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 299s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 299s Selecting previously unselected package libcairo2:amd64. 299s Preparing to unpack .../060-libcairo2_1.18.0-1_amd64.deb ... 299s Unpacking libcairo2:amd64 (1.18.0-1) ... 299s Selecting previously unselected package libdatrie1:amd64. 299s Preparing to unpack .../061-libdatrie1_0.2.13-3_amd64.deb ... 299s Unpacking libdatrie1:amd64 (0.2.13-3) ... 299s Selecting previously unselected package libdeflate0:amd64. 299s Preparing to unpack .../062-libdeflate0_1.19-1_amd64.deb ... 299s Unpacking libdeflate0:amd64 (1.19-1) ... 299s Selecting previously unselected package libgraphite2-3:amd64. 299s Preparing to unpack .../063-libgraphite2-3_1.3.14-2_amd64.deb ... 299s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 299s Selecting previously unselected package libharfbuzz0b:amd64. 299s Preparing to unpack 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unpack .../106-libreadline-dev_8.2-3_amd64.deb ... 301s Unpacking libreadline-dev:amd64 (8.2-3) ... 301s Selecting previously unselected package libsharpyuv0:amd64. 301s Preparing to unpack .../107-libsharpyuv0_1.3.2-0.4_amd64.deb ... 301s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 301s Selecting previously unselected package libsm6:amd64. 301s Preparing to unpack .../108-libsm6_2%3a1.2.3-1build2_amd64.deb ... 301s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 301s Selecting previously unselected package libtcl8.6:amd64. 301s Preparing to unpack .../109-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 301s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 301s Selecting previously unselected package libjbig0:amd64. 301s Preparing to unpack .../110-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 301s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 301s Selecting previously unselected package libwebp7:amd64. 301s Preparing to unpack .../111-libwebp7_1.3.2-0.4_amd64.deb ... 301s Unpacking libwebp7:amd64 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pkgconf:amd64. 303s Preparing to unpack .../129-pkgconf_1.8.1-2_amd64.deb ... 303s Unpacking pkgconf:amd64 (1.8.1-2) ... 303s Selecting previously unselected package pkg-config:amd64. 303s Preparing to unpack .../130-pkg-config_1.8.1-2_amd64.deb ... 303s Unpacking pkg-config:amd64 (1.8.1-2) ... 303s Selecting previously unselected package liblzma-dev:amd64. 303s Preparing to unpack .../131-liblzma-dev_5.4.5-0.3_amd64.deb ... 303s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 303s Selecting previously unselected package r-base-dev. 303s Preparing to unpack .../132-r-base-dev_4.3.2-1build1_all.deb ... 303s Unpacking r-base-dev (4.3.2-1build1) ... 303s Selecting previously unselected package pkg-r-autopkgtest. 303s Preparing to unpack .../133-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 303s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 304s Selecting previously unselected package r-bioc-biocgenerics. 304s Preparing to unpack .../134-r-bioc-biocgenerics_0.48.1-2_all.deb ... 304s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 304s Selecting previously unselected package r-bioc-biobase. 304s Preparing to unpack .../135-r-bioc-biobase_2.62.0-1_amd64.deb ... 304s Unpacking r-bioc-biobase (2.62.0-1) ... 304s Selecting previously unselected package r-bioc-s4vectors. 304s Preparing to unpack .../136-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 304s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 304s Selecting previously unselected package r-bioc-iranges. 304s Preparing to unpack .../137-r-bioc-iranges_2.36.0-1_amd64.deb ... 304s Unpacking r-bioc-iranges (2.36.0-1) ... 304s Selecting previously unselected package r-cran-dbi. 304s Preparing to unpack .../138-r-cran-dbi_1.2.2-1_all.deb ... 304s Unpacking r-cran-dbi (1.2.2-1) ... 304s Selecting previously unselected package r-cran-bit. 304s Preparing to unpack .../139-r-cran-bit_4.0.5-1_amd64.deb ... 304s Unpacking r-cran-bit (4.0.5-1) ... 304s Selecting previously unselected package r-cran-bit64. 304s Preparing to unpack .../140-r-cran-bit64_4.0.5-1_amd64.deb ... 304s Unpacking r-cran-bit64 (4.0.5-1) ... 304s Selecting previously unselected package r-cran-rlang. 304s Preparing to unpack .../141-r-cran-rlang_1.1.3-1_amd64.deb ... 304s Unpacking r-cran-rlang (1.1.3-1) ... 304s Selecting previously unselected package r-cran-cli. 304s Preparing to unpack .../142-r-cran-cli_3.6.2-1_amd64.deb ... 304s Unpacking r-cran-cli (3.6.2-1) ... 304s Selecting previously unselected package r-cran-glue. 304s Preparing to unpack .../143-r-cran-glue_1.7.0-1_amd64.deb ... 304s Unpacking r-cran-glue (1.7.0-1) ... 304s Selecting previously unselected package r-cran-lifecycle. 304s Preparing to unpack .../144-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 304s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 304s Selecting previously unselected package r-cran-vctrs. 304s Preparing to unpack .../145-r-cran-vctrs_0.6.5-1_amd64.deb ... 304s Unpacking r-cran-vctrs (0.6.5-1) ... 304s Selecting previously unselected package r-cran-blob. 304s Preparing to unpack .../146-r-cran-blob_1.2.4-1_all.deb ... 304s Unpacking r-cran-blob (1.2.4-1) ... 304s Selecting previously unselected package r-cran-fastmap. 304s Preparing to unpack .../147-r-cran-fastmap_1.1.1-1_amd64.deb ... 304s Unpacking r-cran-fastmap (1.1.1-1) ... 304s Selecting previously unselected package r-cran-cachem. 304s Preparing to unpack .../148-r-cran-cachem_1.0.8-1_amd64.deb ... 304s Unpacking r-cran-cachem (1.0.8-1) ... 304s Selecting previously unselected package r-cran-memoise. 304s Preparing to unpack .../149-r-cran-memoise_2.0.1-1_all.deb ... 304s Unpacking r-cran-memoise (2.0.1-1) ... 304s Selecting previously unselected package r-cran-pkgconfig. 304s Preparing to unpack .../150-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 304s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 304s Selecting previously unselected package r-cran-plogr. 304s Preparing to unpack .../151-r-cran-plogr_0.2.0-3build1_all.deb ... 304s Unpacking r-cran-plogr (0.2.0-3build1) ... 304s Selecting previously unselected package r-cran-cpp11. 304s Preparing to unpack .../152-r-cran-cpp11_0.4.7-1_all.deb ... 304s Unpacking r-cran-cpp11 (0.4.7-1) ... 304s Selecting previously unselected package r-cran-rsqlite. 304s Preparing to unpack .../153-r-cran-rsqlite_2.3.4-1_amd64.deb ... 304s Unpacking r-cran-rsqlite (2.3.4-1) ... 304s Selecting previously unselected package r-cran-curl. 304s Preparing to unpack .../154-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 304s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 304s Selecting previously unselected package r-cran-jsonlite. 304s Preparing to unpack .../155-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 304s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 305s Selecting previously unselected package r-cran-mime. 305s Preparing to unpack .../156-r-cran-mime_0.12-1_amd64.deb ... 305s Unpacking r-cran-mime (0.12-1) ... 305s Selecting previously unselected package r-cran-sys. 305s Preparing to unpack .../157-r-cran-sys_3.4.2-1_amd64.deb ... 305s Unpacking r-cran-sys (3.4.2-1) ... 305s Selecting previously unselected package r-cran-askpass. 305s Preparing to unpack .../158-r-cran-askpass_1.2.0-1_amd64.deb ... 305s Unpacking r-cran-askpass (1.2.0-1) ... 305s Selecting previously unselected package r-cran-openssl. 305s Preparing to unpack .../159-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 305s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 305s Selecting previously unselected package r-cran-r6. 305s Preparing to unpack .../160-r-cran-r6_2.5.1-1_all.deb ... 305s Unpacking r-cran-r6 (2.5.1-1) ... 305s Selecting previously unselected package r-cran-httr. 305s Preparing to unpack .../161-r-cran-httr_1.4.7+dfsg-1_all.deb ... 305s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 305s Selecting previously unselected package r-cran-png. 305s Preparing to unpack .../162-r-cran-png_0.1-8-1_amd64.deb ... 305s Unpacking r-cran-png (0.1-8-1) ... 305s Selecting previously unselected package r-bioc-zlibbioc. 305s Preparing to unpack .../163-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 305s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 305s Selecting previously unselected package r-bioc-xvector. 305s Preparing to unpack .../164-r-bioc-xvector_0.42.0-1_amd64.deb ... 305s Unpacking r-bioc-xvector (0.42.0-1) ... 305s Selecting previously unselected package r-cran-bitops. 305s Preparing to unpack .../165-r-cran-bitops_1.0-7-1_amd64.deb ... 305s Unpacking r-cran-bitops (1.0-7-1) ... 305s Selecting previously unselected package r-cran-rcurl. 305s Preparing to unpack .../166-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 305s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 305s Selecting previously unselected package r-bioc-genomeinfodbdata. 305s Preparing to unpack .../167-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 305s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 305s Selecting previously unselected package r-bioc-genomeinfodb. 305s Preparing to unpack .../168-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 305s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 305s Selecting previously unselected package r-cran-crayon. 305s Preparing to unpack .../169-r-cran-crayon_1.5.2-1_all.deb ... 305s Unpacking r-cran-crayon (1.5.2-1) ... 305s Selecting previously unselected package r-bioc-biostrings. 305s Preparing to unpack .../170-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 305s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 305s Selecting previously unselected package r-bioc-keggrest. 305s Preparing to unpack .../171-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 305s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 305s Selecting previously unselected package r-bioc-annotationdbi. 305s Preparing to unpack .../172-r-bioc-annotationdbi_1.64.1-1_all.deb ... 305s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 305s Selecting previously unselected package r-bioc-genomicranges. 305s Preparing to unpack .../173-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 305s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 305s Selecting previously unselected package r-cran-lazyeval. 305s Preparing to unpack .../174-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 305s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 306s Selecting previously unselected package r-bioc-annotationfilter. 306s Preparing to unpack .../175-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 306s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 306s Selecting previously unselected package r-cran-generics. 306s Preparing to unpack .../176-r-cran-generics_0.1.3-1_all.deb ... 306s Unpacking r-cran-generics (0.1.3-1) ... 306s Selecting previously unselected package r-cran-magrittr. 306s Preparing to unpack .../177-r-cran-magrittr_2.0.3-1_amd64.deb ... 306s Unpacking r-cran-magrittr (2.0.3-1) ... 306s Selecting previously unselected package r-cran-fansi. 306s Preparing to unpack .../178-r-cran-fansi_1.0.5-1_amd64.deb ... 306s Unpacking r-cran-fansi (1.0.5-1) ... 306s Selecting previously unselected package r-cran-utf8. 306s Preparing to unpack .../179-r-cran-utf8_1.2.4-1_amd64.deb ... 306s Unpacking r-cran-utf8 (1.2.4-1) ... 306s Selecting previously unselected package r-cran-pillar. 306s Preparing to unpack .../180-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 306s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 306s Selecting previously unselected package r-cran-tibble. 306s Preparing to unpack .../181-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 306s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 306s Selecting previously unselected package r-cran-withr. 306s Preparing to unpack .../182-r-cran-withr_2.5.0-1_all.deb ... 306s Unpacking r-cran-withr (2.5.0-1) ... 306s Selecting previously unselected package r-cran-tidyselect. 306s Preparing to unpack .../183-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 306s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 306s Selecting previously unselected package r-cran-dplyr. 306s Preparing to unpack .../184-r-cran-dplyr_1.1.4-1_amd64.deb ... 306s Unpacking r-cran-dplyr (1.1.4-1) ... 306s Selecting previously unselected package r-cran-purrr. 306s Preparing to unpack .../185-r-cran-purrr_1.0.2-1_amd64.deb ... 306s Unpacking r-cran-purrr (1.0.2-1) ... 306s Selecting previously unselected package r-cran-stringi. 306s Preparing to unpack .../186-r-cran-stringi_1.8.3-1_amd64.deb ... 306s Unpacking r-cran-stringi (1.8.3-1) ... 306s Selecting previously unselected package r-cran-stringr. 306s Preparing to unpack .../187-r-cran-stringr_1.5.1-1_all.deb ... 306s Unpacking r-cran-stringr (1.5.1-1) ... 306s Selecting previously unselected package r-cran-tidyr. 306s Preparing to unpack .../188-r-cran-tidyr_1.3.1-1_amd64.deb ... 306s Unpacking r-cran-tidyr (1.3.1-1) ... 306s Selecting previously unselected package r-cran-dbplyr. 306s Preparing to unpack .../189-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 306s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 306s Selecting previously unselected package r-cran-filelock. 306s Preparing to unpack .../190-r-cran-filelock_1.0.3-1_amd64.deb ... 306s Unpacking r-cran-filelock (1.0.3-1) ... 306s Selecting previously unselected package r-bioc-biocfilecache. 306s Preparing to unpack .../191-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 306s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 306s Selecting previously unselected package r-bioc-biocio. 306s Preparing to unpack .../192-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 306s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 306s Selecting previously unselected package r-cran-formatr. 306s Preparing to unpack .../193-r-cran-formatr_1.14-1_all.deb ... 306s Unpacking r-cran-formatr (1.14-1) ... 306s Selecting previously unselected package r-cran-lambda.r. 306s Preparing to unpack .../194-r-cran-lambda.r_1.2.4-2build1_all.deb ... 306s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 306s Selecting previously unselected package r-cran-futile.options. 307s Preparing to unpack .../195-r-cran-futile.options_1.0.1-3build1_all.deb ... 307s Unpacking r-cran-futile.options (1.0.1-3build1) ... 307s Selecting previously unselected package r-cran-futile.logger. 307s Preparing to unpack .../196-r-cran-futile.logger_1.4.3-4build1_all.deb ... 307s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 307s Selecting previously unselected package r-cran-snow. 307s Preparing to unpack .../197-r-cran-snow_1%3a0.4.4-2_all.deb ... 307s Unpacking r-cran-snow (1:0.4.4-2) ... 307s Selecting previously unselected package r-cran-codetools. 307s Preparing to unpack .../198-r-cran-codetools_0.2-19-1_all.deb ... 307s Unpacking r-cran-codetools (0.2-19-1) ... 307s Selecting previously unselected package r-cran-bh. 307s Preparing to unpack .../199-r-cran-bh_1.84.0-1_all.deb ... 307s Unpacking r-cran-bh (1.84.0-1) ... 307s Selecting previously unselected package r-bioc-biocparallel. 307s Preparing to unpack .../200-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 307s Unpacking r-bioc-biocparallel (1.36.0-1) ... 307s Selecting previously unselected package r-cran-xml. 307s Preparing to unpack .../201-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 307s Unpacking r-cran-xml (3.99-0.16.1-1) ... 307s Selecting previously unselected package r-cran-hms. 307s Preparing to unpack .../202-r-cran-hms_1.1.3-1_all.deb ... 307s Unpacking r-cran-hms (1.1.3-1) ... 307s Selecting previously unselected package r-cran-prettyunits. 307s Preparing to unpack .../203-r-cran-prettyunits_1.2.0-1_all.deb ... 307s Unpacking r-cran-prettyunits (1.2.0-1) ... 307s Selecting previously unselected package r-cran-progress. 307s Preparing to unpack .../204-r-cran-progress_1.2.3-1_all.deb ... 307s Unpacking r-cran-progress (1.2.3-1) ... 307s Selecting previously unselected package r-cran-digest. 307s Preparing to unpack .../205-r-cran-digest_0.6.34-1_amd64.deb ... 307s Unpacking r-cran-digest (0.6.34-1) ... 307s Selecting previously unselected package r-cran-rappdirs. 307s Preparing to unpack .../206-r-cran-rappdirs_0.3.3-1_amd64.deb ... 307s Unpacking r-cran-rappdirs (0.3.3-1) ... 307s Selecting previously unselected package r-cran-xml2. 307s Preparing to unpack .../207-r-cran-xml2_1.3.6-1_amd64.deb ... 307s Unpacking r-cran-xml2 (1.3.6-1) ... 307s Selecting previously unselected package r-bioc-biomart. 307s Preparing to unpack .../208-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 307s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 307s Selecting previously unselected package r-cran-farver. 307s Preparing to unpack .../209-r-cran-farver_2.1.1-1_amd64.deb ... 307s Unpacking r-cran-farver (2.1.1-1) ... 307s Selecting previously unselected package r-cran-labeling. 307s Preparing to unpack .../210-r-cran-labeling_0.4.3-1_all.deb ... 307s Unpacking r-cran-labeling (0.4.3-1) ... 307s Selecting previously unselected package r-cran-colorspace. 307s Preparing to unpack .../211-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 307s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 307s Selecting previously unselected package r-cran-munsell. 307s Preparing to unpack .../212-r-cran-munsell_0.5.0-2build1_all.deb ... 307s Unpacking r-cran-munsell (0.5.0-2build1) ... 307s Selecting previously unselected package r-cran-rcolorbrewer. 307s Preparing to unpack .../213-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 307s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 307s Selecting previously unselected package r-cran-viridislite. 307s Preparing to unpack .../214-r-cran-viridislite_0.4.2-2_all.deb ... 307s Unpacking r-cran-viridislite (0.4.2-2) ... 307s Selecting previously unselected package r-cran-scales. 307s Preparing to unpack .../215-r-cran-scales_1.3.0-1_all.deb ... 307s Unpacking r-cran-scales (1.3.0-1) ... 308s Selecting previously unselected package r-cran-gtable. 308s Preparing to unpack .../216-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 308s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 308s Selecting previously unselected package r-cran-isoband. 308s Preparing to unpack .../217-r-cran-isoband_0.2.7-1_amd64.deb ... 308s Unpacking r-cran-isoband (0.2.7-1) ... 308s Selecting previously unselected package r-cran-mass. 308s Preparing to unpack .../218-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 308s Unpacking r-cran-mass (7.3-60.0.1-1) ... 308s Selecting previously unselected package r-cran-lattice. 308s Preparing to unpack .../219-r-cran-lattice_0.22-5-1_amd64.deb ... 308s Unpacking r-cran-lattice (0.22-5-1) ... 308s Selecting previously unselected package r-cran-nlme. 308s Preparing to unpack .../220-r-cran-nlme_3.1.164-1_amd64.deb ... 308s Unpacking r-cran-nlme (3.1.164-1) ... 308s Selecting previously unselected package r-cran-matrix. 308s Preparing to unpack .../221-r-cran-matrix_1.6-5-1_amd64.deb ... 308s Unpacking r-cran-matrix (1.6-5-1) ... 308s Selecting previously unselected package r-cran-mgcv. 308s Preparing to unpack .../222-r-cran-mgcv_1.9-1-1_amd64.deb ... 308s Unpacking r-cran-mgcv (1.9-1-1) ... 308s Selecting previously unselected package r-cran-ggplot2. 308s Preparing to unpack .../223-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 308s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 308s Selecting previously unselected package r-cran-cluster. 308s Preparing to unpack .../224-r-cran-cluster_2.1.6-1_amd64.deb ... 308s Unpacking r-cran-cluster (2.1.6-1) ... 308s Selecting previously unselected package r-cran-survival. 308s Preparing to unpack .../225-r-cran-survival_3.5-8-1_amd64.deb ... 308s Unpacking r-cran-survival (3.5-8-1) ... 308s Selecting previously unselected package r-cran-rpart. 308s Preparing to unpack .../226-r-cran-rpart_4.1.23-1_amd64.deb ... 308s Unpacking r-cran-rpart (4.1.23-1) ... 308s Selecting previously unselected package r-cran-nnet. 308s Preparing to unpack .../227-r-cran-nnet_7.3-19-2_amd64.deb ... 308s Unpacking r-cran-nnet (7.3-19-2) ... 308s Selecting previously unselected package r-cran-foreign. 308s Preparing to unpack .../228-r-cran-foreign_0.8.86-1_amd64.deb ... 308s Unpacking r-cran-foreign (0.8.86-1) ... 308s Selecting previously unselected package r-cran-gridextra. 308s Preparing to unpack .../229-r-cran-gridextra_2.3-3build1_all.deb ... 308s Unpacking r-cran-gridextra (2.3-3build1) ... 308s Selecting previously unselected package r-cran-data.table. 308s Preparing to unpack .../230-r-cran-data.table_1.14.10+dfsg-1_amd64.deb ... 308s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 308s Selecting previously unselected package r-cran-evaluate. 308s Preparing to unpack .../231-r-cran-evaluate_0.23-1_all.deb ... 308s Unpacking r-cran-evaluate (0.23-1) ... 308s Selecting previously unselected package r-cran-xfun. 308s Preparing to unpack .../232-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 308s Unpacking r-cran-xfun (0.41+dfsg-1) ... 308s Selecting previously unselected package r-cran-highr. 308s Preparing to unpack .../233-r-cran-highr_0.10+dfsg-1_all.deb ... 308s Unpacking r-cran-highr (0.10+dfsg-1) ... 308s Selecting previously unselected package r-cran-yaml. 308s Preparing to unpack .../234-r-cran-yaml_2.3.8-1_amd64.deb ... 308s Unpacking r-cran-yaml (2.3.8-1) ... 309s Selecting previously unselected package libjs-mathjax. 309s Preparing to unpack .../235-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 309s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 309s Selecting previously unselected package r-cran-knitr. 309s Preparing to unpack .../236-r-cran-knitr_1.45+dfsg-1_all.deb ... 309s Unpacking r-cran-knitr (1.45+dfsg-1) ... 309s Selecting previously unselected package r-cran-backports. 309s Preparing to unpack .../237-r-cran-backports_1.4.1-1_amd64.deb ... 309s Unpacking r-cran-backports (1.4.1-1) ... 309s Selecting previously unselected package r-cran-checkmate. 309s Preparing to unpack .../238-r-cran-checkmate_2.3.1-1_amd64.deb ... 309s Unpacking r-cran-checkmate (2.3.1-1) ... 309s Selecting previously unselected package r-cran-base64enc. 309s Preparing to unpack .../239-r-cran-base64enc_0.1-3-3_amd64.deb ... 309s Unpacking r-cran-base64enc (0.1-3-3) ... 310s Selecting previously unselected package r-cran-ellipsis. 310s Preparing to unpack .../240-r-cran-ellipsis_0.3.2-2_amd64.deb ... 310s Unpacking r-cran-ellipsis (0.3.2-2) ... 310s Selecting previously unselected package r-cran-htmltools. 310s Preparing to unpack .../241-r-cran-htmltools_0.5.7-1_amd64.deb ... 310s Unpacking r-cran-htmltools (0.5.7-1) ... 310s Selecting previously unselected package r-cran-jquerylib. 310s Preparing to unpack .../242-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 310s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 310s Selecting previously unselected package r-cran-fs. 310s Preparing to unpack .../243-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 310s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 310s Selecting previously unselected package r-cran-sass. 310s Preparing to unpack .../244-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 310s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 310s Selecting previously unselected package r-cran-bslib. 310s Preparing to unpack .../245-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 310s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 310s Selecting previously unselected package r-cran-fontawesome. 310s Preparing to unpack .../246-r-cran-fontawesome_0.5.2-1_all.deb ... 310s Unpacking r-cran-fontawesome (0.5.2-1) ... 310s Selecting previously unselected package r-cran-tinytex. 310s Preparing to unpack .../247-r-cran-tinytex_0.49-1_all.deb ... 310s Unpacking r-cran-tinytex (0.49-1) ... 310s Selecting previously unselected package libjs-modernizr. 310s Preparing to unpack .../248-libjs-modernizr_2.6.2+ds1-5_all.deb ... 310s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 310s Selecting previously unselected package r-cran-pkgkitten. 310s Preparing to unpack .../249-r-cran-pkgkitten_0.2.3-1_all.deb ... 310s Unpacking r-cran-pkgkitten (0.2.3-1) ... 310s Selecting previously unselected package r-cran-rcpp. 310s Preparing to unpack .../250-r-cran-rcpp_1.0.12-1_amd64.deb ... 310s Unpacking r-cran-rcpp (1.0.12-1) ... 310s Selecting previously unselected package r-cran-later. 310s Preparing to unpack .../251-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 310s Unpacking r-cran-later (1.3.2+dfsg-1) ... 310s Selecting previously unselected package r-cran-promises. 310s Preparing to unpack .../252-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 310s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 310s Selecting previously unselected package r-cran-httpuv. 310s Preparing to unpack .../253-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 310s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 310s Selecting previously unselected package r-cran-xtable. 310s Preparing to unpack .../254-r-cran-xtable_1%3a1.8-4-2_all.deb ... 310s Unpacking r-cran-xtable (1:1.8-4-2) ... 310s Selecting previously unselected package r-cran-sourcetools. 310s Preparing to unpack .../255-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 310s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 311s Selecting previously unselected package r-cran-commonmark. 311s Preparing to unpack .../256-r-cran-commonmark_1.9.1-1_amd64.deb ... 311s Unpacking r-cran-commonmark (1.9.1-1) ... 311s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 311s Preparing to unpack .../257-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 311s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 311s Selecting previously unselected package r-cran-shiny. 311s Preparing to unpack .../258-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 311s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 311s Selecting previously unselected package r-cran-rmarkdown. 311s Preparing to unpack .../259-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 311s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 311s Selecting previously unselected package r-cran-htmlwidgets. 311s Preparing to unpack .../260-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 311s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 311s Selecting previously unselected package r-cran-rstudioapi. 311s Preparing to unpack .../261-r-cran-rstudioapi_0.15.0-1_all.deb ... 311s Unpacking r-cran-rstudioapi (0.15.0-1) ... 311s Selecting previously unselected package r-cran-htmltable. 311s Preparing to unpack .../262-r-cran-htmltable_2.4.2-1_all.deb ... 311s Unpacking r-cran-htmltable (2.4.2-1) ... 311s Selecting previously unselected package r-cran-viridis. 311s Preparing to unpack .../263-r-cran-viridis_0.6.5-1_all.deb ... 311s Unpacking r-cran-viridis (0.6.5-1) ... 311s Selecting previously unselected package r-cran-formula. 311s Preparing to unpack .../264-r-cran-formula_1.2-5-1_all.deb ... 311s Unpacking r-cran-formula (1.2-5-1) ... 311s Selecting previously unselected package r-cran-chron. 311s Preparing to unpack .../265-r-cran-chron_2.3-61-2_amd64.deb ... 311s Unpacking r-cran-chron (2.3-61-2) ... 311s Selecting previously unselected package r-cran-jpeg. 311s Preparing to unpack .../266-r-cran-jpeg_0.1-10-1_amd64.deb ... 311s Unpacking r-cran-jpeg (0.1-10-1) ... 311s Selecting previously unselected package r-cran-deldir. 311s Preparing to unpack .../267-r-cran-deldir_2.0-4-1_amd64.deb ... 311s Unpacking r-cran-deldir (2.0-4-1) ... 311s Selecting previously unselected package r-cran-rcppeigen. 311s Preparing to unpack .../268-r-cran-rcppeigen_0.3.3.9.4-1_amd64.deb ... 311s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 311s Selecting previously unselected package r-cran-interp. 311s Preparing to unpack .../269-r-cran-interp_1.1-6-1_amd64.deb ... 311s Unpacking r-cran-interp (1.1-6-1) ... 311s Selecting previously unselected package r-cran-latticeextra. 311s Preparing to unpack .../270-r-cran-latticeextra_0.6-30-1_all.deb ... 311s Unpacking r-cran-latticeextra (0.6-30-1) ... 311s Selecting previously unselected package r-cran-acepack. 311s Preparing to unpack .../271-r-cran-acepack_1.4.2-1_amd64.deb ... 311s Unpacking r-cran-acepack (1.4.2-1) ... 311s Selecting previously unselected package r-cran-hmisc. 311s Preparing to unpack .../272-r-cran-hmisc_5.1-1-1_amd64.deb ... 311s Unpacking r-cran-hmisc (5.1-1-1) ... 311s Selecting previously unselected package r-cran-dichromat. 311s Preparing to unpack .../273-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 311s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 312s Selecting previously unselected package r-cran-matrixstats. 312s Preparing to unpack .../274-r-cran-matrixstats_1.2.0-1_amd64.deb ... 312s Unpacking r-cran-matrixstats (1.2.0-1) ... 312s Selecting previously unselected package r-bioc-matrixgenerics. 312s Preparing to unpack .../275-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 312s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 312s Selecting previously unselected package r-cran-abind. 312s Preparing to unpack .../276-r-cran-abind_1.4-5-2_all.deb ... 312s Unpacking r-cran-abind (1.4-5-2) ... 312s Selecting previously unselected package r-bioc-s4arrays. 312s Preparing to unpack .../277-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 312s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 312s Selecting previously unselected package r-bioc-sparsearray. 312s Preparing to unpack .../278-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 312s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 312s Selecting previously unselected package r-bioc-delayedarray. 312s Preparing to unpack .../279-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 312s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 312s Selecting previously unselected package r-bioc-summarizedexperiment. 312s Preparing to unpack .../280-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 312s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 312s Selecting previously unselected package r-bioc-rhtslib. 312s Preparing to unpack .../281-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 312s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 312s Selecting previously unselected package r-bioc-rsamtools. 312s Preparing to unpack .../282-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 312s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 312s Selecting previously unselected package r-bioc-genomicalignments. 312s Preparing to unpack .../283-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 312s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 312s Selecting previously unselected package r-cran-rjson. 312s Preparing to unpack .../284-r-cran-rjson_0.2.21-1_amd64.deb ... 312s Unpacking r-cran-rjson (0.2.21-1) ... 312s Selecting previously unselected package r-cran-restfulr. 312s Preparing to unpack .../285-r-cran-restfulr_0.0.15-1_amd64.deb ... 312s Unpacking r-cran-restfulr (0.0.15-1) ... 312s Selecting previously unselected package r-bioc-rtracklayer. 312s Preparing to unpack .../286-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 312s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 312s Selecting previously unselected package r-bioc-genomicfeatures. 312s Preparing to unpack .../287-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 312s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 312s Selecting previously unselected package r-bioc-bsgenome. 312s Preparing to unpack .../288-r-bioc-bsgenome_1.70.2-1_all.deb ... 312s Unpacking r-bioc-bsgenome (1.70.2-1) ... 312s Selecting previously unselected package r-bioc-variantannotation. 312s Preparing to unpack .../289-r-bioc-variantannotation_1.48.1-1_amd64.deb ... 312s Unpacking r-bioc-variantannotation (1.48.1-1) ... 312s Selecting previously unselected package r-bioc-protgenerics. 312s Preparing to unpack .../290-r-bioc-protgenerics_1.34.0-1_all.deb ... 312s Unpacking r-bioc-protgenerics (1.34.0-1) ... 312s Selecting previously unselected package r-bioc-ensembldb. 312s Preparing to unpack .../291-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 312s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 313s Selecting previously unselected package r-bioc-biovizbase. 313s Preparing to unpack .../292-r-bioc-biovizbase_1.50.0-1_amd64.deb ... 313s Unpacking r-bioc-biovizbase (1.50.0-1) ... 313s Selecting previously unselected package r-cran-plyr. 313s Preparing to unpack .../293-r-cran-plyr_1.8.9-1_amd64.deb ... 313s Unpacking r-cran-plyr (1.8.9-1) ... 313s Selecting previously unselected package r-cran-reshape2. 313s 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/etc/papersize with new version 313s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 313s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 313s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 313s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 313s Setting up libdatrie1:amd64 (0.2.13-3) ... 313s Setting up libjs-popper.js (1.16.1+ds-6) ... 313s Setting up libxcb-render0:amd64 (1.15-1) ... 313s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 313s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 313s Setting up unzip (6.0-28ubuntu3) ... 313s Setting up x11-common (1:7.7+23ubuntu2) ... 314s Setting up node-html5shiv (3.7.3+dfsg-5) ... 314s Setting up libdeflate0:amd64 (1.19-1) ... 314s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 314s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 314s Setting up libxcb-shm0:amd64 (1.15-1) ... 314s Setting up libpaper-utils (1.1.29) ... 314s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ... 314s Setting up libjs-modernizr (2.6.2+ds1-5) ... 314s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ... 314s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 314s Setting up libjs-es5-shim (4.6.7-2) ... 314s Setting up zip (3.0-13) ... 314s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 314s Setting up libblas3:amd64 (3.12.0-3) ... 314s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 314s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 314s Setting up libpkgconf3:amd64 (1.8.1-2) ... 314s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 314s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ... 314s Setting up libjs-d3 (3.5.17-4) ... 314s Setting up fonts-dejavu-mono (2.37-8) ... 314s Setting up libmpc3:amd64 (1.3.1-1) ... 314s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ... 314s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... 314s Setting up icu-devtools (74.2-1ubuntu1) ... 314s Setting up fonts-dejavu-core (2.37-8) ... 314s Setting up pkgconf-bin (1.8.1-2) ... 314s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 314s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 314s Setting up libwebp7:amd64 (1.3.2-0.4) ... 314s Setting up liblzma-dev:amd64 (5.4.5-0.3) ... 314s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ... 314s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 314s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 314s Setting up libnsl-dev:amd64 (1.3.0-3) ... 314s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 314s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 314s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 314s Setting up liblua5.4-0:amd64 (5.4.6-3) ... 314s Setting up libharfbuzz0b:amd64 (8.3.0-2) ... 314s Setting up libthai-data (0.1.29-2) ... 314s Setting up node-bootstrap-sass (3.4.3-2) ... 314s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 314s Setting up libxss1:amd64 (1:1.2.3-1build2) ... 314s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 314s Setting up pandoc-data (3.1.3-1) ... 314s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ... 314s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 314s Setting up libisl23:amd64 (0.26-3) ... 314s Setting up libc-dev-bin (2.39-0ubuntu2) ... 314s Setting up node-normalize.css (8.0.1-5) ... 314s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 314s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 314s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 314s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 314s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 314s Setting up libblas-dev:amd64 (3.12.0-3) ... 314s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 314s Setting up dctrl-tools (2.24-3build2) ... 314s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 314s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 314s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 314s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 314s Setting up libice6:amd64 (2:1.0.10-1build2) ... 314s Setting up liblapack3:amd64 (3.12.0-3) ... 314s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 314s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 314s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 314s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 314s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 314s Setting up pkgconf:amd64 (1.8.1-2) ... 314s Setting up libthai0:amd64 (0.1.29-2) ... 314s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 314s Setting up pandoc (3.1.3+ds-2) ... 314s Setting up liblapack-dev:amd64 (3.12.0-3) ... 314s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 314s Setting up pkg-config:amd64 (1.8.1-2) ... 314s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 314s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 314s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ... 314s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 314s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 314s Setting up libsm6:amd64 (2:1.2.3-1build2) ... 314s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ... 314s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 314s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 314s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 314s Setting up fontconfig (2.15.0-1ubuntu1) ... 316s Regenerating fonts cache... done. 316s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 316s Setting up libxft2:amd64 (2.3.6-1) ... 316s Setting up libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 316s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 316s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ... 316s Setting up cpp-13 (13.2.0-17ubuntu2) ... 316s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 316s Setting up libtk8.6:amd64 (8.6.13-2) ... 316s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... 316s Setting up libreadline-dev:amd64 (8.2-3) ... 316s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 316s Setting up libcairo2:amd64 (1.18.0-1) ... 316s Setting up gcc-13 (13.2.0-17ubuntu2) ... 316s Setting up libxt6:amd64 (1:1.2.1-1.1) ... 316s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 316s Setting up cpp (4:13.2.0-7ubuntu1) ... 316s Setting up libboost-dev:amd64 (1.83.0.1ubuntu2) ... 316s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 316s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 316s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 316s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 316s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 316s Setting up libpng-dev:amd64 (1.6.43-1) ... 316s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 316s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 316s Setting up gcc (4:13.2.0-7ubuntu1) ... 316s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 316s Setting up r-base-core (4.3.2-1build1) ... 316s 316s Creating config file /etc/R/Renviron with new version 316s Setting up r-cran-crayon (1.5.2-1) ... 316s Setting up r-cran-labeling (0.4.3-1) ... 316s Setting up r-cran-sourcetools (0.1.7-1-1) ... 316s Setting up r-cran-futile.options (1.0.1-3build1) ... 316s Setting up r-cran-lattice (0.22-5-1) ... 316s Setting up r-cran-nlme (3.1.164-1) ... 316s Setting up r-cran-farver (2.1.1-1) ... 316s Setting up r-cran-formatr (1.14-1) ... 316s Setting up r-cran-formula (1.2-5-1) ... 316s Setting up r-cran-xml (3.99-0.16.1-1) ... 316s Setting up r-cran-viridislite (0.4.2-2) ... 316s Setting up r-cran-cluster (2.1.6-1) ... 316s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 316s Setting up r-cran-nnet (7.3-19-2) ... 316s Setting up r-cran-lazyeval (0.2.2-1build1) ... 316s Setting up r-cran-commonmark (1.9.1-1) ... 316s Setting up r-cran-r6 (2.5.1-1) ... 316s Setting up r-cran-pkgkitten (0.2.3-1) ... 316s Setting up r-cran-jpeg (0.1-10-1) ... 316s Setting up r-cran-chron (2.3-61-2) ... 316s Setting up r-cran-fastcluster (1.2.6-1) ... 316s Setting up r-cran-magrittr (2.0.3-1) ... 316s Setting up r-cran-rappdirs (0.3.3-1) ... 316s Setting up r-cran-filelock (1.0.3-1) ... 316s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 316s Setting up r-cran-littler (0.3.19-1) ... 316s Setting up r-cran-bh (1.84.0-1) ... 316s Setting up r-cran-fs (1.6.3+dfsg-1) ... 316s Setting up r-cran-rcpp (1.0.12-1) ... 316s Setting up r-cran-curl (5.2.0+dfsg-1) ... 316s Setting up r-cran-codetools (0.2-19-1) ... 316s Setting up g++-13 (13.2.0-17ubuntu2) ... 316s Setting up r-bioc-biocgenerics (0.48.1-2) ... 316s Setting up r-cran-rlang 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(7.3-60.0.1-1) ... 316s Setting up r-cran-checkmate (2.3.1-1) ... 316s Setting up r-cran-acepack (1.4.2-1) ... 316s Setting up r-cran-snow (1:0.4.4-2) ... 316s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 316s Setting up r-cran-glue (1.7.0-1) ... 316s Setting up r-cran-foreign (0.8.86-1) ... 316s Setting up r-cran-bit (4.0.5-1) ... 316s Setting up r-cran-xtable (1:1.8-4-2) ... 316s Setting up r-cran-cli (3.6.2-1) ... 316s Setting up gfortran (4:13.2.0-7ubuntu1) ... 316s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 316s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 316s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 316s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 316s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 316s Setting up r-cran-bitops (1.0-7-1) ... 316s Setting up r-cran-bit64 (4.0.5-1) ... 316s Setting up r-cran-dichromat (1:2.0-0.1-1) ... 316s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 316s Setting up r-cran-deldir (2.0-4-1) ... 316s Setting up r-cran-askpass (1.2.0-1) ... 316s Setting up r-cran-fastmap (1.1.1-1) ... 316s Setting up r-cran-png (0.1-8-1) ... 316s Setting up r-bioc-biobase (2.62.0-1) ... 316s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 316s Setting up r-cran-rstudioapi (0.15.0-1) ... 316s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 316s Setting up r-cran-utf8 (1.2.4-1) ... 316s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 316s Setting up r-cran-stringi (1.8.3-1) ... 316s Setting up r-cran-cpp11 (0.4.7-1) ... 316s Setting up r-cran-plyr (1.8.9-1) ... 316s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 316s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 316s Setting up r-cran-isoband (0.2.7-1) ... 316s Setting up r-cran-futile.logger (1.4.3-4build1) ... 316s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 316s Setting up r-cran-later (1.3.2+dfsg-1) ... 316s Setting up r-cran-matrix (1.6-5-1) ... 316s Setting up r-cran-tinytex (0.49-1) ... 316s Setting up r-cran-knitr (1.45+dfsg-1) ... 316s Setting up r-cran-mgcv (1.9-1-1) ... 316s Setting up g++ (4:13.2.0-7ubuntu1) ... 316s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 316s Setting up r-cran-cachem (1.0.8-1) ... 316s Setting up build-essential (12.10ubuntu1) ... 316s Setting up r-bioc-iranges (2.36.0-1) ... 316s Setting up r-cran-rjson (0.2.21-1) ... 316s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 316s Setting up r-cran-restfulr (0.0.15-1) ... 316s Setting up r-cran-vctrs (0.6.5-1) ... 316s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 316s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 316s Setting up r-cran-ellipsis (0.3.2-2) ... 316s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 316s Setting up r-base-dev (4.3.2-1build1) ... 316s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 316s Setting up r-cran-stringr (1.5.1-1) ... 316s Setting up r-bioc-biocparallel (1.36.0-1) ... 316s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 316s Setting up r-cran-xml2 (1.3.6-1) ... 316s Setting up r-cran-munsell (0.5.0-2build1) ... 316s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 316s Setting up r-cran-survival (3.5-8-1) ... 316s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 316s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 316s Setting up r-cran-reshape2 (1.4.4-2build1) ... 316s Setting up r-cran-interp (1.1-6-1) ... 316s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 316s Setting up r-cran-httr (1.4.7+dfsg-1) ... 316s Setting up r-cran-gridextra (2.3-3build1) ... 316s Setting up r-cran-hms (1.1.3-1) ... 316s Setting up r-cran-scales (1.3.0-1) ... 316s Setting up r-cran-memoise (2.0.1-1) ... 316s Setting up r-cran-promises (1.2.1+dfsg-1) ... 316s Setting up r-cran-purrr (1.0.2-1) ... 316s Setting up r-cran-blob (1.2.4-1) ... 316s Setting up r-cran-htmltools (0.5.7-1) ... 316s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 316s Setting up r-bioc-xvector (0.42.0-1) ... 316s Setting up r-cran-sass (0.4.8+dfsg-1) ... 316s Setting up r-cran-dplyr (1.1.4-1) ... 316s Setting up r-cran-rsqlite (2.3.4-1) ... 316s Setting up r-cran-progress (1.2.3-1) ... 316s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 316s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 316s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 316s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 316s Setting up r-cran-rpart (4.1.23-1) ... 316s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 316s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 316s Setting up r-cran-fontawesome (0.5.2-1) ... 316s Setting up r-cran-latticeextra (0.6-30-1) ... 316s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 316s Setting up r-cran-viridis (0.6.5-1) ... 316s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 316s Setting up r-cran-tidyr (1.3.1-1) ... 316s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 316s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 316s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 316s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 316s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 316s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 316s Setting up r-bioc-annotationdbi (1.64.1-1) ... 316s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 316s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 316s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 316s Setting up r-bioc-genomicalignments (1.38.2-1) ... 316s Setting up r-bioc-rtracklayer (1.62.0-1) ... 316s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 316s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 316s Setting up r-bioc-bsgenome (1.70.2-1) ... 316s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 316s Setting up r-bioc-variantannotation (1.48.1-1) ... 316s Setting up r-cran-htmltable (2.4.2-1) ... 316s Setting up r-cran-hmisc (5.1-1-1) ... 316s Setting up r-bioc-biovizbase (1.50.0-1) ... 316s Setting up r-bioc-gviz (1.46.1+dfsg-1) ... 316s Setting up r-bioc-cummerbund (2.44.0-1) ... 316s Processing triggers for install-info (7.1-3) ... 317s Processing triggers for libc-bin (2.39-0ubuntu2) ... 317s Processing triggers for man-db (2.12.0-3) ... 329s Reading package lists... 329s Building dependency tree... 329s Reading state information... 329s Starting pkgProblemResolver with broken count: 0 330s Starting 2 pkgProblemResolver with broken count: 0 330s Done 330s The following NEW packages will be installed: 330s autopkgtest-satdep 330s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 330s Need to get 0 B/700 B of archives. 330s After this operation, 0 B of additional disk space will be used. 330s Get:1 /tmp/autopkgtest.ellQ4o/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 330s Selecting previously unselected package autopkgtest-satdep. 330s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 115147 files and directories currently installed.) 330s Preparing to unpack .../2-autopkgtest-satdep.deb ... 330s Unpacking autopkgtest-satdep (0) ... 330s Setting up autopkgtest-satdep (0) ... 332s (Reading database ... 115147 files and directories currently installed.) 332s Removing autopkgtest-satdep (0) ... 333s autopkgtest [02:08:40]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 333s autopkgtest [02:08:40]: test pkg-r-autopkgtest: [----------------------- 333s Test: Try to load the R library cummeRbund 333s 333s R version 4.3.2 (2023-10-31) -- "Eye Holes" 333s Copyright (C) 2023 The R Foundation for Statistical Computing 333s Platform: x86_64-pc-linux-gnu (64-bit) 333s 333s R is free software and comes with ABSOLUTELY NO WARRANTY. 333s You are welcome to redistribute it under certain conditions. 333s Type 'license()' or 'licence()' for distribution details. 333s 333s R is a collaborative project with many contributors. 333s Type 'contributors()' for more information and 333s 'citation()' on how to cite R or R packages in publications. 333s 333s Type 'demo()' for some demos, 'help()' for on-line help, or 333s 'help.start()' for an HTML browser interface to help. 333s Type 'q()' to quit R. 333s 333s > library('cummeRbund') 333s Loading required package: BiocGenerics 333s 333s Attaching package: ‘BiocGenerics’ 333s 333s The following objects are masked from ‘package:stats’: 333s 333s IQR, mad, sd, var, xtabs 333s 333s The following objects are masked from ‘package:base’: 333s 333s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 333s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 333s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 333s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 333s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 333s table, tapply, union, unique, unsplit, which.max, which.min 333s 333s Loading required package: RSQLite 334s Loading required package: ggplot2 334s Loading required package: reshape2 334s Loading required package: fastcluster 334s 334s Attaching package: ‘fastcluster’ 334s 334s The following object is masked from ‘package:stats’: 334s 334s hclust 334s 334s Loading required package: rtracklayer 334s Loading required package: GenomicRanges 334s Loading required package: stats4 334s Loading required package: S4Vectors 335s 335s Attaching package: ‘S4Vectors’ 335s 335s The following object is masked from ‘package:utils’: 335s 335s findMatches 335s 335s The following objects are masked from ‘package:base’: 335s 335s expand.grid, I, unname 335s 335s Loading required package: IRanges 337s Loading required package: GenomeInfoDb 343s Loading required package: Gviz 343s Loading required package: grid 348s 348s Attaching package: 'cummeRbund' 348s 348s The following object is masked from 'package:GenomicRanges': 348s 348s promoters 348s 348s The following object is masked from 'package:IRanges': 348s 348s promoters 348s 348s The following object is masked from 'package:BiocGenerics': 348s 348s conditions 348s 348s > 348s > 348s Other tests are currently unsupported! 348s They will be progressively added. 349s autopkgtest [02:08:56]: test pkg-r-autopkgtest: -----------------------] 349s pkg-r-autopkgtest PASS 349s autopkgtest [02:08:56]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 349s autopkgtest [02:08:56]: @@@@@@@@@@@@@@@@@@@@ summary 349s pkg-r-autopkgtest PASS 359s Creating nova instance adt-noble-i386-r-bioc-cummerbund-20240322-020306-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...