0s autopkgtest [13:08:05]: starting date and time: 2024-03-21 13:08:05+0000 0s autopkgtest [13:08:05]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [13:08:05]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7qwlx7ka/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-cran-rcurl --apt-upgrade r-bioc-biocviews --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-rcurl/1.98-1.14+dfsg-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-79.secgroup --name adt-noble-i386-r-bioc-biocviews-20240321-130805-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 176s autopkgtest [13:11:01]: testbed dpkg architecture: amd64 176s autopkgtest [13:11:01]: testbed apt version: 2.7.12 176s autopkgtest [13:11:01]: test architecture: i386 176s autopkgtest [13:11:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 176s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 177s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3818 kB] 177s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 177s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 177s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 177s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [697 kB] 177s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [460 kB] 177s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 177s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 177s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 177s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 177s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4242 kB] 177s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1281 kB] 177s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 177s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 177s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 177s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 180s Fetched 11.3 MB in 2s (7510 kB/s) 180s Reading package lists... 182s Reading package lists... 182s Building dependency tree... 182s Reading state information... 182s Calculating upgrade... 182s The following packages will be upgraded: 182s debianutils linux-firmware 182s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 182s Need to get 476 MB of archives. 182s After this operation, 5724 kB of additional disk space will be used. 182s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.17 [89.8 kB] 182s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-firmware amd64 20240318.git3b128b60-0ubuntu1 [475 MB] 186s Fetched 476 MB in 4s (135 MB/s) 186s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 186s Preparing to unpack .../debianutils_5.17_amd64.deb ... 186s Unpacking debianutils (5.17) over (5.16) ... 186s Setting up debianutils (5.17) ... 186s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 186s Preparing to unpack .../linux-firmware_20240318.git3b128b60-0ubuntu1_amd64.deb ... 186s Unpacking linux-firmware (20240318.git3b128b60-0ubuntu1) over (20240202.git36777504-0ubuntu1) ... 189s Setting up linux-firmware (20240318.git3b128b60-0ubuntu1) ... 189s Processing triggers for man-db (2.12.0-3) ... 190s Processing triggers for initramfs-tools (0.142ubuntu20) ... 190s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 190s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 198s Reading package lists... 198s Building dependency tree... 198s Reading state information... 198s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 199s sh: Attempting to set up Debian/Ubuntu apt sources automatically 199s sh: Distribution appears to be Ubuntu 200s Reading package lists... 200s Building dependency tree... 200s Reading state information... 200s eatmydata is already the newest version (131-1). 200s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 200s Reading package lists... 201s Building dependency tree... 201s Reading state information... 201s dbus is already the newest version (1.14.10-4ubuntu1). 201s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 201s Reading package lists... 201s Building dependency tree... 201s Reading state information... 202s rng-tools-debian is already the newest version (2.4). 202s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 202s Reading package lists... 202s Building dependency tree... 202s Reading state information... 202s The following packages will be REMOVED: 202s cloud-init* python3-configobj* python3-debconf* 202s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 202s After this operation, 3252 kB disk space will be freed. 202s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 202s Removing cloud-init (24.1.1-0ubuntu1) ... 203s Removing python3-configobj (5.0.8-3) ... 203s Removing python3-debconf (1.5.86) ... 203s Processing triggers for man-db (2.12.0-3) ... 203s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71476 files and directories currently installed.) 203s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 204s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 204s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 204s invoke-rc.d: policy-rc.d denied execution of try-restart. 204s Reading package lists... 204s Building dependency tree... 204s Reading state information... 205s linux-generic is already the newest version (6.8.0-11.11+1). 205s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 205s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 205s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 205s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 207s Reading package lists... 207s Reading package lists... 207s Building dependency tree... 207s Reading state information... 207s Calculating upgrade... 207s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 207s Reading package lists... 208s Building dependency tree... 208s Reading state information... 208s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 208s autopkgtest [13:11:33]: rebooting testbed after setup commands that affected boot 241s autopkgtest [13:12:06]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 242s autopkgtest [13:12:07]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-biocviews 243s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocviews 1.70.0-1 (dsc) [2187 B] 243s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocviews 1.70.0-1 (tar) [518 kB] 243s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocviews 1.70.0-1 (diff) [5836 B] 243s gpgv: Signature made Thu Nov 30 09:24:43 2023 UTC 243s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 243s gpgv: issuer "tille@debian.org" 243s gpgv: Can't check signature: No public key 243s dpkg-source: warning: cannot verify inline signature for ./r-bioc-biocviews_1.70.0-1.dsc: no acceptable signature found 243s autopkgtest [13:12:08]: testing package r-bioc-biocviews version 1.70.0-1 243s autopkgtest [13:12:08]: build not needed 245s autopkgtest [13:12:10]: test pkg-r-autopkgtest: preparing testbed 249s Note, using file '/tmp/autopkgtest.XTIdK6/1-autopkgtest-satdep.dsc' to get the build dependencies 249s Reading package lists... 249s Building dependency tree... 249s Reading state information... 250s Starting pkgProblemResolver with broken count: 0 250s Starting 2 pkgProblemResolver with broken count: 0 250s Done 250s The following NEW packages will be installed: 250s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 250s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 250s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 250s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 250s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 250s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 250s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 250s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 250s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 250s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 250s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 250s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 250s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 250s libjs-highlight.js libjs-jquery libjs-jquery-datatables 250s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 250s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 250s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 250s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 250s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 250s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 250s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 250s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 250s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 250s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 250s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 250s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 250s linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css 250s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 250s r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocstyle 250s r-bioc-biocviews r-bioc-graph r-bioc-rbgl r-cran-base64enc r-cran-bh 250s r-cran-biocmanager r-cran-bitops r-cran-bookdown r-cran-bslib r-cran-cachem 250s r-cran-cli r-cran-commonmark r-cran-crayon r-cran-digest r-cran-ellipsis 250s r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue 250s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite 250s r-cran-knitr r-cran-later r-cran-lifecycle r-cran-littler r-cran-magrittr 250s r-cran-memoise r-cran-mime r-cran-pkgkitten r-cran-promises r-cran-r6 250s r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rmarkdown 250s r-cran-runit r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-stringi 250s r-cran-stringr r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun 250s r-cran-xml r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 250s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 250s x11-common xdg-utils zip zlib1g-dev 250s 0 upgraded, 214 newly installed, 0 to remove and 0 not upgraded. 250s Need to get 343 MB of archives. 250s After this operation, 1223 MB of additional disk space will be used. 250s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 250s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 250s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 250s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 250s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 250s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 250s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 250s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 250s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 250s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 250s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 250s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 250s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 250s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 250s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 250s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 250s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 250s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 250s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 250s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 250s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 250s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 250s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 250s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 250s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 251s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 251s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 251s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 251s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 251s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 251s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 251s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 251s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 251s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 251s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 251s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 251s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 251s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 251s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 251s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 251s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 251s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 251s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 251s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 251s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 251s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 251s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 251s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 251s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 251s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 251s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 251s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 251s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 251s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 251s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 251s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 251s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 251s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 251s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 251s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 251s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 251s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 251s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 251s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 251s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 251s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 251s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 251s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 251s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 251s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 251s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 251s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 252s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 252s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 252s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 252s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 252s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 252s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 252s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 252s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 252s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 252s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 252s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 252s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 252s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 252s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 252s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 252s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 252s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 252s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 252s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 252s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 252s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 252s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 252s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 252s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 252s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 252s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 252s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 252s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 252s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 252s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 252s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 252s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 252s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 252s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 252s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 252s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 252s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 252s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 252s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 252s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 252s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 252s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 252s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 252s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 252s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 252s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 252s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 252s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 252s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 252s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 252s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 252s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 252s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 252s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 252s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 252s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 252s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 252s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 252s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 252s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 252s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 252s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 252s Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 252s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 252s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 252s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 252s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 252s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 252s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 252s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 252s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 252s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 252s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 252s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 252s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 252s Get:148 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 252s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 252s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 252s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 252s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 252s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 252s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 252s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 252s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 252s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 252s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 252s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 252s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 252s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 252s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 252s Get:163 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 252s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 252s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 252s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 252s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 252s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 252s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 252s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 252s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 252s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 252s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 252s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 252s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 252s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 252s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 252s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 252s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 252s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 252s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 252s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 252s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 252s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 252s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 252s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 252s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 252s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 252s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 252s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 252s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 252s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 252s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 252s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 252s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 252s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 252s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 252s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 252s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 252s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 252s Get:201 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 252s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 252s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 253s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 253s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 254s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 254s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-graph amd64 1.80.0-1 [1289 kB] 254s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 254s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rbgl amd64 1.78.0+dfsg-1 [551 kB] 254s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 254s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 254s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 254s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-runit all 0.4.32-3 [283 kB] 254s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocviews all 1.70.0-1 [658 kB] 255s Preconfiguring packages ... 255s Fetched 343 MB in 4s (87.4 MB/s) 255s Selecting previously unselected package libc-dev-bin. 255s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71421 files and directories currently installed.) 255s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 255s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 255s Selecting previously unselected package linux-libc-dev:amd64. 255s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 255s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 255s Selecting previously unselected package libcrypt-dev:amd64. 255s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 255s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 255s Selecting previously unselected package libtirpc-dev:amd64. 255s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 255s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 255s Selecting previously unselected package libnsl-dev:amd64. 255s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 255s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 255s Selecting previously unselected package rpcsvc-proto. 255s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 255s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 255s Selecting previously unselected package libc6-dev:amd64. 255s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 255s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 256s Selecting previously unselected package libisl23:amd64. 256s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 256s Unpacking libisl23:amd64 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libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 258s Selecting previously unselected package fontconfig. 258s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 258s Unpacking fontconfig (2.15.0-1ubuntu1) ... 258s Selecting previously unselected package fonts-font-awesome. 258s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 258s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 258s Selecting previously unselected package fonts-glyphicons-halflings. 258s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 258s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 258s Selecting previously unselected package fonts-lmodern. 258s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 258s Unpacking fonts-lmodern (2.005-1) ... 258s Selecting previously unselected package fonts-mathjax. 258s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 258s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 258s Selecting previously unselected package libgfortran5:amd64. 258s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 258s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 258s Selecting previously unselected package libgfortran-13-dev:amd64. 258s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 258s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 258s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 258s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 258s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 259s Selecting previously unselected package gfortran-13. 259s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 259s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 259s Selecting previously unselected package gfortran-x86-64-linux-gnu. 259s Preparing to unpack .../048-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 259s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 259s Selecting previously unselected package gfortran. 259s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 259s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 259s Selecting previously unselected package icu-devtools. 259s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_amd64.deb ... 259s Unpacking icu-devtools (74.2-1ubuntu1) ... 259s Selecting previously unselected package javascript-common. 259s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 259s Unpacking javascript-common (11+nmu1) ... 259s Selecting previously unselected package libio-string-perl. 259s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 259s Unpacking libio-string-perl (1.08-4) ... 259s Selecting previously unselected package liblatex-tounicode-perl. 259s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 259s Unpacking liblatex-tounicode-perl (0.54-2) ... 259s Selecting previously unselected package libbibtex-parser-perl. 259s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 259s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 259s Selecting previously unselected package libblas3:amd64. 259s Preparing to unpack .../055-libblas3_3.12.0-3_amd64.deb ... 259s Unpacking libblas3:amd64 (3.12.0-3) ... 259s Selecting previously unselected package libblas-dev:amd64. 259s Preparing to unpack .../056-libblas-dev_3.12.0-3_amd64.deb ... 259s Unpacking libblas-dev:amd64 (3.12.0-3) ... 259s Selecting previously unselected package libboost1.83-dev:amd64. 259s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 259s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 261s Selecting previously unselected package libboost-dev:amd64. 262s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 262s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ... 262s Selecting previously unselected package libbz2-dev:amd64. 262s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 262s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 262s Selecting previously unselected package libpixman-1-0:amd64. 262s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_amd64.deb ... 262s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 262s Selecting previously unselected package libxcb-render0:amd64. 262s Preparing to unpack .../061-libxcb-render0_1.15-1_amd64.deb ... 262s Unpacking libxcb-render0:amd64 (1.15-1) ... 262s Selecting previously unselected package libxcb-shm0:amd64. 262s Preparing to unpack .../062-libxcb-shm0_1.15-1_amd64.deb ... 262s Unpacking libxcb-shm0:amd64 (1.15-1) ... 262s Selecting previously unselected package libxrender1:amd64. 262s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 262s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 262s Selecting previously unselected package libcairo2:amd64. 262s Preparing to unpack .../064-libcairo2_1.18.0-1_amd64.deb ... 262s Unpacking libcairo2:amd64 (1.18.0-1) ... 262s Selecting previously unselected package libdatrie1:amd64. 262s Preparing to unpack .../065-libdatrie1_0.2.13-3_amd64.deb ... 262s Unpacking libdatrie1:amd64 (0.2.13-3) ... 262s Selecting previously unselected package libdeflate0:amd64. 262s Preparing to unpack .../066-libdeflate0_1.19-1_amd64.deb ... 262s Unpacking libdeflate0:amd64 (1.19-1) ... 262s Selecting previously unselected package libgraphite2-3:amd64. 262s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_amd64.deb ... 262s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 262s Selecting previously unselected package libharfbuzz0b:amd64. 262s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_amd64.deb ... 262s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 262s Selecting previously unselected package x11-common. 262s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 262s Unpacking x11-common (1:7.7+23ubuntu2) ... 262s Selecting previously unselected package libice6:amd64. 262s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_amd64.deb ... 262s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 262s Selecting previously unselected package libicu-dev:amd64. 262s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_amd64.deb ... 262s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 262s Selecting previously unselected package libjpeg-turbo8:amd64. 262s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 262s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 262s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 262s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 262s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 262s Selecting previously unselected package libjpeg8:amd64. 262s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_amd64.deb ... 262s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 262s Selecting previously unselected package libjpeg8-dev:amd64. 262s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 262s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 262s Selecting previously unselected package libjpeg-dev:amd64. 262s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 262s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 262s Selecting previously unselected package libjs-bootstrap. 262s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 262s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 262s Selecting previously unselected package libjs-popper.js. 262s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 262s Unpacking libjs-popper.js (1.16.1+ds-6) ... 262s Selecting previously unselected package libjs-bootstrap4. 262s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 262s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 262s Selecting previously unselected package libjs-d3. 262s 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Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 263s Selecting previously unselected package liblua5.4-0:amd64. 263s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_amd64.deb ... 263s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 263s Selecting previously unselected package libncurses-dev:amd64. 263s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 263s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 263s Selecting previously unselected package libthai-data. 263s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 263s Unpacking libthai-data (0.1.29-2) ... 263s Selecting previously unselected package libthai0:amd64. 263s Preparing to unpack .../099-libthai0_0.1.29-2_amd64.deb ... 263s Unpacking libthai0:amd64 (0.1.29-2) ... 263s Selecting previously unselected package libpango-1.0-0:amd64. 263s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 263s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 263s Selecting previously unselected package libpangoft2-1.0-0:amd64. 263s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 263s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 263s Selecting previously unselected package libpangocairo-1.0-0:amd64. 263s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 263s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 263s Selecting previously unselected package libpaper1:amd64. 263s Preparing to unpack .../103-libpaper1_1.1.29_amd64.deb ... 263s Unpacking libpaper1:amd64 (1.1.29) ... 263s Selecting previously unselected package libpaper-utils. 263s Preparing to unpack .../104-libpaper-utils_1.1.29_amd64.deb ... 263s Unpacking libpaper-utils (1.1.29) ... 263s Selecting previously unselected package libpcre2-16-0:amd64. 263s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 263s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 263s Selecting previously unselected package libpcre2-32-0:amd64. 263s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 263s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 263s Selecting previously unselected package libpcre2-posix3:amd64. 263s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 263s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 263s Selecting previously unselected package libpcre2-dev:amd64. 263s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 263s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 264s Selecting previously unselected package libpkgconf3:amd64. 264s Preparing to unpack .../109-libpkgconf3_1.8.1-2_amd64.deb ... 264s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 264s Selecting previously unselected package zlib1g-dev:amd64. 264s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 264s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 264s Selecting previously unselected package libpng-dev:amd64. 264s Preparing to unpack .../111-libpng-dev_1.6.43-1_amd64.deb ... 264s Unpacking libpng-dev:amd64 (1.6.43-1) ... 264s Selecting previously unselected package libpotrace0:amd64. 264s Preparing to unpack .../112-libpotrace0_1.16-2_amd64.deb ... 264s Unpacking libpotrace0:amd64 (1.16-2) ... 264s Selecting previously unselected package libptexenc1:amd64. 264s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_amd64.deb ... 264s Unpacking libptexenc1:amd64 (2023.20230311.66589-9) ... 264s Selecting previously unselected package libreadline-dev:amd64. 264s Preparing to unpack .../114-libreadline-dev_8.2-3_amd64.deb ... 264s Unpacking libreadline-dev:amd64 (8.2-3) ... 264s Selecting previously unselected package libsharpyuv0:amd64. 264s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_amd64.deb ... 264s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 264s Selecting previously unselected package libsm6:amd64. 264s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_amd64.deb ... 264s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 264s Selecting previously unselected package libsynctex2:amd64. 264s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_amd64.deb ... 264s Unpacking libsynctex2:amd64 (2023.20230311.66589-9) ... 264s Selecting previously unselected package libtcl8.6:amd64. 264s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 264s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 264s Selecting previously unselected package libteckit0:amd64. 264s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_amd64.deb ... 264s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 264s Selecting previously unselected package libtexlua53-5:amd64. 264s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_amd64.deb ... 264s Unpacking libtexlua53-5:amd64 (2023.20230311.66589-9) ... 264s Selecting previously unselected package libjbig0:amd64. 264s Preparing to unpack .../121-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 264s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 264s Selecting previously unselected package libwebp7:amd64. 264s Preparing to unpack .../122-libwebp7_1.3.2-0.4_amd64.deb ... 264s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 264s Selecting previously unselected package libtiff6:amd64. 264s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 264s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 264s Selecting previously unselected package libxft2:amd64. 264s Preparing to unpack .../124-libxft2_2.3.6-1_amd64.deb ... 264s Unpacking libxft2:amd64 (2.3.6-1) ... 264s Selecting previously unselected package libxss1:amd64. 264s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_amd64.deb ... 264s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 264s Selecting previously unselected package libtk8.6:amd64. 264s Preparing to unpack .../126-libtk8.6_8.6.13-2_amd64.deb ... 264s Unpacking libtk8.6:amd64 (8.6.13-2) ... 264s Selecting previously unselected package libxt6:amd64. 264s Preparing to unpack .../127-libxt6_1%3a1.2.1-1.1_amd64.deb ... 264s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 264s Selecting previously unselected package libxmu6:amd64. 264s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_amd64.deb ... 264s Unpacking libxmu6:amd64 (2:1.1.3-3) ... 264s Selecting previously unselected package libxpm4:amd64. 264s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_amd64.deb ... 264s Unpacking libxpm4:amd64 (1:3.5.17-1) ... 264s Selecting previously unselected package libxaw7:amd64. 264s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_amd64.deb ... 264s Unpacking libxaw7:amd64 (2:1.0.14-1) ... 264s Selecting previously unselected package libxi6:amd64. 264s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_amd64.deb ... 264s Unpacking libxi6:amd64 (2:1.8.1-1) ... 264s Selecting previously unselected package libzzip-0-13:amd64. 264s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... 264s Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 264s Selecting previously unselected package zip. 264s Preparing to unpack .../133-zip_3.0-13_amd64.deb ... 264s Unpacking zip (3.0-13) ... 264s Selecting previously unselected package unzip. 264s Preparing to unpack .../134-unzip_6.0-28ubuntu3_amd64.deb ... 264s Unpacking unzip (6.0-28ubuntu3) ... 264s Selecting previously unselected package xdg-utils. 264s Preparing to unpack .../135-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 264s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 264s Selecting previously unselected package r-base-core. 264s Preparing to unpack .../136-r-base-core_4.3.2-1build1_amd64.deb ... 264s Unpacking r-base-core (4.3.2-1build1) ... 265s Selecting previously unselected package r-cran-littler. 265s Preparing to unpack .../137-r-cran-littler_0.3.19-1_amd64.deb ... 265s Unpacking r-cran-littler (0.3.19-1) ... 265s Selecting previously unselected package littler. 265s Preparing to unpack .../138-littler_0.3.19-1_all.deb ... 265s Unpacking littler (0.3.19-1) ... 265s Selecting previously unselected package node-bootstrap-sass. 265s Preparing to unpack .../139-node-bootstrap-sass_3.4.3-2_all.deb ... 265s Unpacking node-bootstrap-sass (3.4.3-2) ... 265s Selecting previously unselected package node-html5shiv. 265s Preparing to unpack .../140-node-html5shiv_3.7.3+dfsg-5_all.deb ... 265s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 265s Selecting previously unselected package node-normalize.css. 265s Preparing to unpack .../141-node-normalize.css_8.0.1-5_all.deb ... 265s Unpacking node-normalize.css (8.0.1-5) ... 265s Selecting previously unselected package pandoc-data. 265s Preparing to unpack .../142-pandoc-data_3.1.3-1_all.deb ... 265s Unpacking pandoc-data (3.1.3-1) ... 265s Selecting previously unselected package pandoc. 265s Preparing to unpack .../143-pandoc_3.1.3+ds-2_amd64.deb ... 265s Unpacking pandoc (3.1.3+ds-2) ... 266s Selecting previously unselected package pkgconf-bin. 266s Preparing to unpack .../144-pkgconf-bin_1.8.1-2_amd64.deb ... 266s Unpacking pkgconf-bin (1.8.1-2) ... 266s Selecting previously unselected package pkgconf:amd64. 266s Preparing to unpack .../145-pkgconf_1.8.1-2_amd64.deb ... 266s Unpacking pkgconf:amd64 (1.8.1-2) ... 266s Selecting previously unselected package pkg-config:amd64. 266s Preparing to unpack .../146-pkg-config_1.8.1-2_amd64.deb ... 266s Unpacking pkg-config:amd64 (1.8.1-2) ... 266s Selecting previously unselected package liblzma-dev:amd64. 266s Preparing to unpack .../147-liblzma-dev_5.4.5-0.3_amd64.deb ... 266s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 266s Selecting previously unselected package r-base-dev. 266s Preparing to unpack .../148-r-base-dev_4.3.2-1build1_all.deb ... 266s Unpacking r-base-dev (4.3.2-1build1) ... 266s Selecting previously unselected package pkg-r-autopkgtest. 266s Preparing to unpack .../149-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 266s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 266s Selecting previously unselected package r-bioc-biocgenerics. 266s Preparing to unpack .../150-r-bioc-biocgenerics_0.48.1-2_all.deb ... 266s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 266s Selecting previously unselected package r-bioc-biobase. 266s Preparing to unpack .../151-r-bioc-biobase_2.62.0-1_amd64.deb ... 266s Unpacking r-bioc-biobase (2.62.0-1) ... 266s Selecting previously unselected package r-cran-base64enc. 266s Preparing to unpack .../152-r-cran-base64enc_0.1-3-3_amd64.deb ... 266s Unpacking r-cran-base64enc (0.1-3-3) ... 266s Selecting previously unselected package r-cran-digest. 266s Preparing to unpack .../153-r-cran-digest_0.6.34-1_amd64.deb ... 266s Unpacking r-cran-digest (0.6.34-1) ... 266s Selecting previously unselected package r-cran-rlang. 266s Preparing to unpack .../154-r-cran-rlang_1.1.3-1_amd64.deb ... 266s Unpacking r-cran-rlang (1.1.3-1) ... 266s Selecting previously unselected package r-cran-ellipsis. 266s Preparing to unpack .../155-r-cran-ellipsis_0.3.2-2_amd64.deb ... 266s Unpacking r-cran-ellipsis (0.3.2-2) ... 266s Selecting previously unselected package r-cran-fastmap. 266s Preparing to unpack .../156-r-cran-fastmap_1.1.1-1_amd64.deb ... 266s Unpacking r-cran-fastmap (1.1.1-1) ... 266s Selecting previously unselected package r-cran-htmltools. 266s Preparing to unpack .../157-r-cran-htmltools_0.5.7-1_amd64.deb ... 266s Unpacking r-cran-htmltools (0.5.7-1) ... 266s Selecting previously unselected package r-cran-evaluate. 266s Preparing to unpack .../158-r-cran-evaluate_0.23-1_all.deb ... 266s Unpacking r-cran-evaluate (0.23-1) ... 266s Selecting previously unselected package r-cran-xfun. 267s Preparing to unpack .../159-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 267s Unpacking r-cran-xfun (0.41+dfsg-1) ... 267s Selecting previously unselected package r-cran-highr. 267s Preparing to unpack .../160-r-cran-highr_0.10+dfsg-1_all.deb ... 267s Unpacking r-cran-highr (0.10+dfsg-1) ... 267s Selecting previously unselected package r-cran-yaml. 267s Preparing to unpack .../161-r-cran-yaml_2.3.8-1_amd64.deb ... 267s Unpacking r-cran-yaml (2.3.8-1) ... 267s Selecting previously unselected package libjs-mathjax. 267s Preparing to unpack .../162-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 267s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 267s Selecting previously unselected package r-cran-knitr. 267s Preparing to unpack .../163-r-cran-knitr_1.45+dfsg-1_all.deb ... 267s Unpacking r-cran-knitr (1.45+dfsg-1) ... 267s Selecting previously unselected package r-cran-cachem. 267s Preparing to unpack .../164-r-cran-cachem_1.0.8-1_amd64.deb ... 267s Unpacking r-cran-cachem (1.0.8-1) ... 267s Selecting previously unselected package r-cran-jquerylib. 267s Preparing to unpack .../165-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 267s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 267s Selecting previously unselected package r-cran-jsonlite. 267s Preparing to unpack .../166-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 267s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 268s Selecting previously unselected package r-cran-cli. 268s Preparing to unpack .../167-r-cran-cli_3.6.2-1_amd64.deb ... 268s Unpacking r-cran-cli (3.6.2-1) ... 268s Selecting previously unselected package r-cran-glue. 268s Preparing to unpack .../168-r-cran-glue_1.7.0-1_amd64.deb ... 268s Unpacking r-cran-glue (1.7.0-1) ... 268s Selecting previously unselected package r-cran-lifecycle. 268s Preparing to unpack .../169-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 268s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 268s Selecting previously unselected package r-cran-memoise. 268s Preparing to unpack .../170-r-cran-memoise_2.0.1-1_all.deb ... 268s Unpacking r-cran-memoise (2.0.1-1) ... 268s Selecting previously unselected package r-cran-mime. 268s Preparing to unpack .../171-r-cran-mime_0.12-1_amd64.deb ... 268s Unpacking r-cran-mime (0.12-1) ... 268s Selecting previously unselected package r-cran-fs. 268s Preparing to unpack .../172-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 268s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 268s Selecting previously unselected package r-cran-r6. 268s Preparing to unpack .../173-r-cran-r6_2.5.1-1_all.deb ... 268s Unpacking r-cran-r6 (2.5.1-1) ... 268s Selecting previously unselected package r-cran-rappdirs. 268s Preparing to unpack .../174-r-cran-rappdirs_0.3.3-1_amd64.deb ... 268s Unpacking r-cran-rappdirs (0.3.3-1) ... 268s Selecting previously unselected package r-cran-sass. 268s Preparing to unpack .../175-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 268s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 268s Selecting previously unselected package r-cran-bslib. 268s Preparing to unpack .../176-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 268s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 268s Selecting previously unselected package r-cran-fontawesome. 268s Preparing to unpack .../177-r-cran-fontawesome_0.5.2-1_all.deb ... 268s Unpacking r-cran-fontawesome (0.5.2-1) ... 268s Selecting previously unselected package r-cran-magrittr. 268s Preparing to unpack .../178-r-cran-magrittr_2.0.3-1_amd64.deb ... 268s Unpacking r-cran-magrittr (2.0.3-1) ... 268s Selecting previously unselected package r-cran-stringi. 268s Preparing to unpack .../179-r-cran-stringi_1.8.3-1_amd64.deb ... 268s Unpacking r-cran-stringi (1.8.3-1) ... 268s Selecting previously unselected package r-cran-vctrs. 268s Preparing to unpack .../180-r-cran-vctrs_0.6.5-1_amd64.deb ... 268s Unpacking r-cran-vctrs (0.6.5-1) ... 268s Selecting previously unselected package r-cran-stringr. 268s Preparing to unpack .../181-r-cran-stringr_1.5.1-1_all.deb ... 268s Unpacking r-cran-stringr (1.5.1-1) ... 268s Selecting previously unselected package r-cran-tinytex. 268s Preparing to unpack .../182-r-cran-tinytex_0.49-1_all.deb ... 268s Unpacking r-cran-tinytex (0.49-1) ... 268s Selecting previously unselected package libjs-modernizr. 268s Preparing to unpack .../183-libjs-modernizr_2.6.2+ds1-5_all.deb ... 268s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 268s Selecting previously unselected package r-cran-pkgkitten. 268s Preparing to unpack .../184-r-cran-pkgkitten_0.2.3-1_all.deb ... 268s Unpacking r-cran-pkgkitten (0.2.3-1) ... 268s Selecting previously unselected package r-cran-rcpp. 268s Preparing to unpack .../185-r-cran-rcpp_1.0.12-1_amd64.deb ... 268s Unpacking r-cran-rcpp (1.0.12-1) ... 268s Selecting previously unselected package r-cran-later. 268s Preparing to unpack .../186-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 268s Unpacking r-cran-later (1.3.2+dfsg-1) ... 269s Selecting previously unselected package r-cran-promises. 269s Preparing to unpack .../187-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 269s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 269s Selecting previously unselected package r-cran-httpuv. 269s Preparing to unpack .../188-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 269s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 269s Selecting previously unselected package r-cran-xtable. 269s Preparing to unpack .../189-r-cran-xtable_1%3a1.8-4-2_all.deb ... 269s Unpacking r-cran-xtable (1:1.8-4-2) ... 269s Selecting previously unselected package r-cran-sourcetools. 269s Preparing to unpack .../190-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 269s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 269s Selecting previously unselected package r-cran-crayon. 269s Preparing to unpack .../191-r-cran-crayon_1.5.2-1_all.deb ... 269s Unpacking r-cran-crayon (1.5.2-1) ... 269s Selecting previously unselected package r-cran-withr. 269s Preparing to unpack .../192-r-cran-withr_2.5.0-1_all.deb ... 269s Unpacking r-cran-withr (2.5.0-1) ... 269s Selecting previously unselected package r-cran-commonmark. 269s Preparing to unpack .../193-r-cran-commonmark_1.9.1-1_amd64.deb ... 269s Unpacking r-cran-commonmark (1.9.1-1) ... 269s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 269s Preparing to unpack .../194-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 269s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 269s Selecting previously unselected package r-cran-shiny. 269s Preparing to unpack .../195-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 269s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 269s Selecting previously unselected package r-cran-rmarkdown. 269s Preparing to unpack .../196-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 269s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 269s Selecting previously unselected package r-cran-bookdown. 269s Preparing to unpack .../197-r-cran-bookdown_0.37+dfsg-1_all.deb ... 269s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 269s Selecting previously unselected package r-cran-biocmanager. 269s Preparing to unpack .../198-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 269s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 269s Selecting previously unselected package tex-common. 269s Preparing to unpack .../199-tex-common_6.18_all.deb ... 269s Unpacking tex-common (6.18) ... 269s Selecting previously unselected package t1utils. 269s Preparing to unpack .../200-t1utils_1.41-4build2_amd64.deb ... 269s Unpacking t1utils (1.41-4build2) ... 269s Selecting previously unselected package texlive-binaries. 269s Preparing to unpack .../201-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 269s Unpacking texlive-binaries (2023.20230311.66589-9) ... 269s Selecting previously unselected package texlive-base. 269s Preparing to unpack .../202-texlive-base_2023.20240207-1_all.deb ... 269s Unpacking texlive-base (2023.20240207-1) ... 271s Selecting previously unselected package texlive-latex-base. 271s Preparing to unpack .../203-texlive-latex-base_2023.20240207-1_all.deb ... 271s Unpacking texlive-latex-base (2023.20240207-1) ... 271s Selecting previously unselected package texlive-bibtex-extra. 271s Preparing to unpack .../204-texlive-bibtex-extra_2023.20240207-1_all.deb ... 271s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 274s Selecting previously unselected package r-bioc-biocstyle. 274s Preparing to unpack .../205-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 274s Unpacking r-bioc-biocstyle 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This may take some time... done. 282s Running mktexlsr /var/lib/texmf ... done. 282s Building format(s) --all. 312s This may take some time... done. 318s Reading package lists... 319s Building dependency tree... 319s Reading state information... 319s Starting pkgProblemResolver with broken count: 0 319s Starting 2 pkgProblemResolver with broken count: 0 319s Done 319s The following NEW packages will be installed: 319s autopkgtest-satdep 319s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 319s Need to get 0 B/696 B of archives. 319s After this operation, 0 B of additional disk space will be used. 319s Get:1 /tmp/autopkgtest.XTIdK6/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 320s Selecting previously unselected package autopkgtest-satdep. 320s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 115905 files and directories currently installed.) 320s Preparing to unpack .../2-autopkgtest-satdep.deb ... 320s Unpacking autopkgtest-satdep (0) ... 320s Setting up autopkgtest-satdep (0) ... 321s (Reading database ... 115905 files and directories currently installed.) 321s Removing autopkgtest-satdep (0) ... 321s autopkgtest [13:13:26]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 321s autopkgtest [13:13:26]: test pkg-r-autopkgtest: [----------------------- 321s Test: Try to load the R library biocViews 322s 322s R version 4.3.2 (2023-10-31) -- "Eye Holes" 322s Copyright (C) 2023 The R Foundation for Statistical Computing 322s Platform: x86_64-pc-linux-gnu (64-bit) 322s 322s R is free software and comes with ABSOLUTELY NO WARRANTY. 322s You are welcome to redistribute it under certain conditions. 322s Type 'license()' or 'licence()' for distribution details. 322s 322s R is a collaborative project with many contributors. 322s Type 'contributors()' for more information and 322s 'citation()' on how to cite R or R packages in publications. 322s 322s Type 'demo()' for some demos, 'help()' for on-line help, or 322s 'help.start()' for an HTML browser interface to help. 322s Type 'q()' to quit R. 322s 322s > library('biocViews') 322s > 322s > 322s Other tests are currently unsupported! 322s They will be progressively added. 323s autopkgtest [13:13:28]: test pkg-r-autopkgtest: -----------------------] 323s pkg-r-autopkgtest PASSautopkgtest [13:13:28]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 323s 323s autopkgtest [13:13:28]: @@@@@@@@@@@@@@@@@@@@ summary 323s pkg-r-autopkgtest PASS 350s Creating nova instance adt-noble-i386-r-bioc-biocviews-20240321-130805-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240320.img (UUID 3219a3f4-90ea-47d9-8dfb-3912f2ae9f95)...